CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1328

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31328L1328FL2146FnonsynCttTtt560556040.9998226701-6703
ORF1ab/nsp31328L1328FL2146FnonsynCtTTtC560510.0001784126701-6703
ORF1ab/nsp31328L1328delL2146deldelCTT---21721716701-6703
ORF1ab/nsp31328L1328LL2146LsynctTctC96850.8854176701-6703
ORF1ab/nsp31328L1328LL2146LsynctTctA9660.06256701-6703
ORF1ab/nsp31328L1328LL2146LsynCtTTtA9630.031256701-6703
ORF1ab/nsp31328L1328LL2146LsynctTctG9620.02083336701-6703
ORF1ab/nsp31328L1328PL2146PnonsyncTtcCt95930.9789476701-6703
ORF1ab/nsp31328L1328PL2146PnonsyncTTcCC9510.01052636701-6703
ORF1ab/nsp31328L1328PL2146PnonsyncTTcCG9510.01052636701-6703
ORF1ab/nsp31328L1328IL2146InonsynCttAtt636316701-6703
ORF1ab/nsp31328L1328del1L2146del1delCtt-tt14130.9285716701-6703
ORF1ab/nsp31328L1328del1L2146del1delCTt-Ct1410.07142866701-6703
ORF1ab/nsp31328L1328VL2146VnonsynCttGtt1070.76701-6703
ORF1ab/nsp31328L1328VL2146VnonsynCtTGtG1030.36701-6703
ORF1ab/nsp31328L1328RL2146RnonsyncTtcGt7716701-6703
ORF1ab/nsp31328L1328SL2146SnonsynCTtTCt640.6666676701-6703
ORF1ab/nsp31328L1328SL2146SnonsynCTTAGC610.1666676701-6703
ORF1ab/nsp31328L1328SL2146SnonsynCTTTCC610.1666676701-6703
ORF1ab/nsp31328L1328HL2146HnonsyncTtcAt4416701-6703
ORF1ab/nsp31328L1328del2L2146del2delcTTc--2216701-6703
ORF1ab/nsp31328L1328AL2146AnonsynCTtGCt210.56701-6703
ORF1ab/nsp31328L1328AL2146AnonsynCTTGCG210.56701-6703
ORF1ab/nsp31328L1328GL2146GnonsynCTTGGG1116701-6703
ORF1ab/nsp31328L1328TL2146TnonsynCTtACt1116701-6703

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31328L1328FCttTtt56045605All0.001072
ORF1ab/nsp31328L1328FCtTTtC15605All0
ORF1ab/nsp31328L1328FCttTtt11381138B.1.1.70.001019
ORF1ab/nsp31328L1328FCttTtt355355AY.40.000553
ORF1ab/nsp31328L1328FCttTtt325325AY.250.001955
ORF1ab/nsp31328L1328FCttTtt305305B.1.1770.004016
ORF1ab/nsp31328L1328FCttTtt273273AY.440.001662
ORF1ab/nsp31328L1328FCttTtt240240AY.4.20.005205
ORF1ab/nsp31328L1328FCttTtt235235AY.60.009665
ORF1ab/nsp31328L1328delCTT---217217All0.000042
ORF1ab/nsp31328L1328FCttTtt204204AY.5.40.056447
ORF1ab/nsp31328L1328FCttTtt192192B.1.617.20.000723
ORF1ab/nsp31328L1328FCttTtt168168B.1.5260.003949
ORF1ab/nsp31328L1328FCttTtt152152B.1.20.001338
ORF1ab/nsp31328L1328FCttTtt128128B.10.001172
ORF1ab/nsp31328L1328FCttTtt108108AY.30.001074
ORF1ab/nsp31328L1328delCTT---9999B.1.1.70.000089
ORF1ab/nsp31328L1328LctTctC8596All0.000016
ORF1ab/nsp31328L1328LctTctA696All0.000001
ORF1ab/nsp31328L1328LCtTTtA396All0.000001
ORF1ab/nsp31328L1328LctTctG296All0
ORF1ab/nsp31328L1328PcTtcCt9395All0.000018
ORF1ab/nsp31328L1328PcTTcCC195All0
ORF1ab/nsp31328L1328PcTTcCG195All0
ORF1ab/nsp31328L1328FCttTtt8686B.1.3690.024529
ORF1ab/nsp31328L1328FCttTtt7878P.10.001229
ORF1ab/nsp31328L1328FCttTtt7272B.1.36.240.444444
ORF1ab/nsp31328L1328FCttTtt7070AY.430.00031
ORF1ab/nsp31328L1328ICttAtt6363All0.000012
ORF1ab/nsp31328L1328FCttTtt6262AY.270.004013
ORF1ab/nsp31328L1328FCttTtt5858B.1.10.001052
ORF1ab/nsp31328L1328FCttTtt5555B.1.438.10.005899
ORF1ab/nsp31328L1328FCttTtt4949AY.1030.000304
ORF1ab/nsp31328L1328FCttTtt4242B.1.4270.002121
ORF1ab/nsp31328L1328FCttTtt4141AN.10.82
ORF1ab/nsp31328L1328FCttTtt4141AY.610.004296
ORF1ab/nsp31328L1328FCttTtt4141B.1.177.860.007522
ORF1ab/nsp31328L1328FCttTtt3434AY.50.000702
ORF1ab/nsp31328L1328FCttTtt3333B.1.1.5190.00131
ORF1ab/nsp31328L1328FCttTtt3030AY.290.000473
ORF1ab/nsp31328L1328FCttTtt2828B.1.1.3120.053537
ORF1ab/nsp31328L1328ICttAtt2828B.1.1.70.000025
ORF1ab/nsp31328L1328FCttTtt2626AY.99.20.002396
ORF1ab/nsp31328L1328FCttTtt2626B.1.1460.110169
ORF1ab/nsp31328L1328FCttTtt2525AY.1020.000663
ORF1ab/nsp31328L1328FCttTtt2525B.1.1.3811
ORF1ab/nsp31328L1328FCttTtt2424AY.140.002112
ORF1ab/nsp31328L1328LctTctC2424B.1.20.000211
ORF1ab/nsp31328L1328FCttTtt2121B.1.1.3180.006337
ORF1ab/nsp31328L1328FCttTtt2020AY.330.001336
ORF1ab/nsp31328L1328PcTtcCt2020B.1.1.70.000018
ORF1ab/nsp31328L1328FCttTtt2020B.1.4000.00858
ORF1ab/nsp31328L1328PcTtcCt1818B.1.20.000158
ORF1ab/nsp31328L1328FCttTtt1717B.1.1600.00053
ORF1ab/nsp31328L1328FCttTtt1717B.1.5820.008342
ORF1ab/nsp31328L1328FCttTtt1616AY.390.000395
ORF1ab/nsp31328L1328FCttTtt1616AY.9.20.000588
ORF1ab/nsp31328L1328FCttTtt1616B.1.4290.000376
ORF1ab/nsp31328L1328FCttTtt1616D.20.001201
ORF1ab/nsp31328L1328FCttTtt1515AY.1190.00053
ORF1ab/nsp31328L1328FCttTtt1515AY.230.001046
ORF1ab/nsp31328L1328del1Ctt-tt1314All0.000002
ORF1ab/nsp31328L1328del1CTt-Ct114All0
ORF1ab/nsp31328L1328LctTctC1214AY.40.000019
ORF1ab/nsp31328L1328LctTctA114AY.40.000002
ORF1ab/nsp31328L1328LctTctG114AY.40.000002
ORF1ab/nsp31328L1328FCttTtt1414B.1.1.2140.000776
ORF1ab/nsp31328L1328delCTT---1414B.1.1770.000184
ORF1ab/nsp31328L1328FCttTtt1313AY.1000.000598
ORF1ab/nsp31328L1328FCttTtt1313AY.3.10.001108
ORF1ab/nsp31328L1328delCTT---1313AY.40.00002
ORF1ab/nsp31328L1328delCTT---1313AY.430.000058
ORF1ab/nsp31328L1328FCttTtt1313B.1.596.10.121495
ORF1ab/nsp31328L1328FCttTtt1212B.1.360.001751
ORF1ab/nsp31328L1328FCttTtt1212C.390.226415
ORF1ab/nsp31328L1328LctTctC1111AY.440.000067
ORF1ab/nsp31328L1328LctTctC1111B.1.1.70.00001
ORF1ab/nsp31328L1328PcTtcCt1111B.1.177.870.008006
ORF1ab/nsp31328L1328FCttTtt1111B.1.2210.000781
ORF1ab/nsp31328L1328FCttTtt1111B.1.2580.000732
ORF1ab/nsp31328L1328FCttTtt1111B.1.466.20.004304
ORF1ab/nsp31328L1328FCttTtt1111B.1.5960.000959
ORF1ab/nsp31328L1328VCttGtt710All0.000001
ORF1ab/nsp31328L1328VCtTGtG310All0.000001
ORF1ab/nsp31328L1328FCttTtt99AY.200.00035
ORF1ab/nsp31328L1328FCttTtt99AY.39.10.000357
ORF1ab/nsp31328L1328PcTtcCt99AY.40.000014
ORF1ab/nsp31328L1328FCttTtt99B.1.258.200.142857
ORF1ab/nsp31328L1328FCttTtt99B.1.3510.000268
ORF1ab/nsp31328L1328FCttTtt99B.1.36.290.004656
ORF1ab/nsp31328L1328FCttTtt88AY.750.000448
ORF1ab/nsp31328L1328del1Ctt-tt88B.1.1.70.000007
ORF1ab/nsp31328L1328FCttTtt88B.1.2410.006494
ORF1ab/nsp31328L1328LctTctC88B.1.3320.027972
ORF1ab/nsp31328L1328RcTtcGt77All0.000001
ORF1ab/nsp31328L1328FCttTtt77AY.1200.00026
ORF1ab/nsp31328L1328FCttTtt77AY.1210.000947
ORF1ab/nsp31328L1328FCttTtt77AY.260.000198
ORF1ab/nsp31328L1328FCttTtt77AY.4.50.000752
ORF1ab/nsp31328L1328FCttTtt77AY.540.000667
ORF1ab/nsp31328L1328FCttTtt77B.1.1.100.007804
ORF1ab/nsp31328L1328FCttTtt77B.1.177.70.001154
ORF1ab/nsp31328L1328FCttTtt77B.1.617.10.000903
ORF1ab/nsp31328L1328delCTT---77B.1.617.20.000026
ORF1ab/nsp31328L1328FCttTtt77C.370.000812
ORF1ab/nsp31328L1328FCttTtt77Q.80.001154
ORF1ab/nsp31328L1328SCTtTCt46All0.000001
ORF1ab/nsp31328L1328SCTTTCC16All0
ORF1ab/nsp31328L1328SCTTAGC16All0
ORF1ab/nsp31328L1328FCttTtt66AY.1170.000507
ORF1ab/nsp31328L1328delCTT---66AY.4.50.000645
ORF1ab/nsp31328L1328FCttTtt66B.1.1.250.003411
ORF1ab/nsp31328L1328FCttTtt66B.1.1.2840.000644
ORF1ab/nsp31328L1328FCttTtt66B.1.1.630.002315
ORF1ab/nsp31328L1328ICttAtt66B.1.1770.000079
ORF1ab/nsp31328L1328FCttTtt66B.1.177.160.003987
ORF1ab/nsp31328L1328FCttTtt66B.1.2400.001293
ORF1ab/nsp31328L1328FCttTtt66B.1.2430.000418
ORF1ab/nsp31328L1328FCttTtt66B.1.5670.02
ORF1ab/nsp31328L1328LctTctC46B.1.617.20.000015
ORF1ab/nsp31328L1328LctTctG16B.1.617.20.000004
ORF1ab/nsp31328L1328LctTctA16B.1.617.20.000004
ORF1ab/nsp31328L1328FCttTtt66R.10.00054
ORF1ab/nsp31328L1328FCttTtt55A.2.30.023697
ORF1ab/nsp31328L1328FCttTtt55AY.10.001979
ORF1ab/nsp31328L1328FCttTtt55AY.1180.000313
ORF1ab/nsp31328L1328ICttAtt55AY.40.000008
ORF1ab/nsp31328L1328FCttTtt55AY.450.000608
ORF1ab/nsp31328L1328FCttTtt55AY.460.00052
ORF1ab/nsp31328L1328PcTtcCt55AY.98.10.000242
ORF1ab/nsp31328L1328FCttTtt55B.1.1.2220.00102
ORF1ab/nsp31328L1328FCttTtt55B.1.160.250.055556
ORF1ab/nsp31328L1328FCttTtt55B.1.177.560.003338
ORF1ab/nsp31328L1328FCttTtt55B.1.2320.002687
ORF1ab/nsp31328L1328FCttTtt55B.1.2390.006105
ORF1ab/nsp31328L1328ICttAtt55B.1.617.20.000019
ORF1ab/nsp31328L1328FCttTtt55P.1.140.000239
ORF1ab/nsp31328L1328FCttTtt55P.20.000933
ORF1ab/nsp31328L1328HcTtcAt44All0.000001
ORF1ab/nsp31328L1328PcTtcCt44AY.250.000024
ORF1ab/nsp31328L1328FCttTtt44AY.75.10.000721
ORF1ab/nsp31328L1328FCttTtt44AY.9.10.000335
ORF1ab/nsp31328L1328FCttTtt44AY.930.001092
ORF1ab/nsp31328L1328FCttTtt44B.1.1.2730.027027
ORF1ab/nsp31328L1328FCttTtt44B.1.1.280.001245
ORF1ab/nsp31328L1328VCttGtt44B.1.1.70.000004
ORF1ab/nsp31328L1328FCttTtt44B.1.177.730.002265
ORF1ab/nsp31328L1328PcTtcCt44B.1.2580.000266
ORF1ab/nsp31328L1328FCttTtt44B.1.3110.001098
ORF1ab/nsp31328L1328FCttTtt44B.1.5950.001044
ORF1ab/nsp31328L1328FCttTtt44B.1.760.045455
ORF1ab/nsp31328L1328FCttTtt33A.2.50.001497
ORF1ab/nsp31328L1328FCttTtt33A.280.007937
ORF1ab/nsp31328L1328FCttTtt33AY.1130.000427
ORF1ab/nsp31328L1328delCTT---33AY.250.000018
ORF1ab/nsp31328L1328FCttTtt33AY.29.10.000662
ORF1ab/nsp31328L1328LctTctC23AY.30.00002
ORF1ab/nsp31328L1328LctTctA13AY.30.00001
ORF1ab/nsp31328L1328FCttTtt33AY.300.001187
ORF1ab/nsp31328L1328FCttTtt33AY.370.000948
ORF1ab/nsp31328L1328FCttTtt33AY.400.002893
ORF1ab/nsp31328L1328ICttAtt33AY.430.000013
ORF1ab/nsp31328L1328FCttTtt33AY.480.001395
ORF1ab/nsp31328L1328FCttTtt33AY.650.001599
ORF1ab/nsp31328L1328FCttTtt33AY.70.000588
ORF1ab/nsp31328L1328FCttTtt33AY.770.003382
ORF1ab/nsp31328L1328FCttTtt33AY.910.002191
ORF1ab/nsp31328L1328FCttTtt33B0.000383
ORF1ab/nsp31328L1328delCTT---33B.10.000027
ORF1ab/nsp31328L1328delCTT---33B.1.10.000054
ORF1ab/nsp31328L1328FCttTtt33B.1.1.10.00098
ORF1ab/nsp31328L1328FCttTtt33B.1.1.2160.002671
ORF1ab/nsp31328L1328FCttTtt33B.1.1.3060.001315
ORF1ab/nsp31328L1328FCttTtt33B.1.1.330.001263
ORF1ab/nsp31328L1328FCttTtt33B.1.1.4340.001046
ORF1ab/nsp31328L1328FCttTtt33B.1.1420.008696
ORF1ab/nsp31328L1328FCttTtt33B.1.177.210.000229
ORF1ab/nsp31328L1328delCTT---33B.1.177.40.000633
ORF1ab/nsp31328L1328FCttTtt33B.1.177.440.001557
ORF1ab/nsp31328L1328FCttTtt33B.1.214.20.001799
ORF1ab/nsp31328L1328FCttTtt33B.1.2340.000396
ORF1ab/nsp31328L1328FCttTtt33B.1.3460.003932
ORF1ab/nsp31328L1328delCTT---33B.1.36.170.001482
ORF1ab/nsp31328L1328FCttTtt33B.1.4740.005703
ORF1ab/nsp31328L1328PcTtcCt23B.1.617.20.000008
ORF1ab/nsp31328L1328PcTTcCG13B.1.617.20.000004
ORF1ab/nsp31328L1328FCttTtt33B.1.6210.000266
ORF1ab/nsp31328L1328FCttTtt33P.30.004785
ORF1ab/nsp31328L1328FCttTtt33Q.30.000435
ORF1ab/nsp31328L1328PcTTcCC120.055556
ORF1ab/nsp31328L1328SCTTTCC120.055556
ORF1ab/nsp31328L1328FCtTTtC120.055556
ORF1ab/nsp31328L1328PcTtcCt120.055556
ORF1ab/nsp31328L1328SCTtTCt120.055556
ORF1ab/nsp31328L1328FCttTtt120.055556
ORF1ab/nsp31328L1328FCttTtt22AA.20.015385
ORF1ab/nsp31328L1328del2cTTc--22All0
ORF1ab/nsp31328L1328ACTtGCt12All0
ORF1ab/nsp31328L1328ACTTGCG12All0
ORF1ab/nsp31328L1328FCttTtt22AY.160.000759
ORF1ab/nsp31328L1328del1Ctt-tt22AY.240.000862
ORF1ab/nsp31328L1328FCttTtt22AY.240.000862
ORF1ab/nsp31328L1328FCttTtt22AY.320.001065
ORF1ab/nsp31328L1328ICttAtt22AY.440.000012
ORF1ab/nsp31328L1328FCttTtt22AY.46.60.000144
ORF1ab/nsp31328L1328LctTctC22AY.46.60.000144
ORF1ab/nsp31328L1328delCTT---22AY.50.000041
ORF1ab/nsp31328L1328LCtTTtA22AY.5.40.000553
ORF1ab/nsp31328L1328FCttTtt22AY.550.001835
ORF1ab/nsp31328L1328FCttTtt22AY.590.001059
ORF1ab/nsp31328L1328FCttTtt22AY.640.00119
ORF1ab/nsp31328L1328PcTtcCt22AY.650.001066
ORF1ab/nsp31328L1328FCttTtt22AY.7.10.000225
ORF1ab/nsp31328L1328FCttTtt22AY.820.002714
ORF1ab/nsp31328L1328FCttTtt22AY.850.000854
ORF1ab/nsp31328L1328FCttTtt22AY.920.000575
ORF1ab/nsp31328L1328FCttTtt22AY.98.10.000097
ORF1ab/nsp31328L1328FCttTtt22AY.990.002099
ORF1ab/nsp31328L1328ICttAtt22B.1.10.000036
ORF1ab/nsp31328L1328LctTctA12B.1.10.000018
ORF1ab/nsp31328L1328LctTctC12B.1.10.000018
ORF1ab/nsp31328L1328FCttTtt22B.1.1.1920.004619
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2180.015385
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2910.001485
ORF1ab/nsp31328L1328FCttTtt22B.1.1.2940.002532
ORF1ab/nsp31328L1328FCttTtt22B.1.1.3160.00185
ORF1ab/nsp31328L1328FCttTtt22B.1.1.4090.005666
ORF1ab/nsp31328L1328RcTtcGt22B.1.1.70.000002
ORF1ab/nsp31328L1328FCttTtt22B.1.1.700.000682
ORF1ab/nsp31328L1328FCttTtt22B.1.110.30.001437
ORF1ab/nsp31328L1328FCttTtt22B.1.1450.105263
ORF1ab/nsp31328L1328delCTT---22B.1.177.160.001329
ORF1ab/nsp31328L1328delCTT---22B.1.177.170.001642
ORF1ab/nsp31328L1328delCTT---22B.1.177.180.00232
ORF1ab/nsp31328L1328FCttTtt22B.1.177.450.000762
ORF1ab/nsp31328L1328delCTT---22B.1.177.560.001335
ORF1ab/nsp31328L1328FCttTtt22B.1.177.620.002384
ORF1ab/nsp31328L1328FCttTtt22B.1.177.820.000955
ORF1ab/nsp31328L1328FCttTtt22B.1.2060.001631
ORF1ab/nsp31328L1328FCttTtt22B.1.221.30.001667
ORF1ab/nsp31328L1328delCTT---22B.1.360.000292
ORF1ab/nsp31328L1328FCttTtt22B.1.4110.007407
ORF1ab/nsp31328L1328VCttGtt22B.1.4290.000047
ORF1ab/nsp31328L1328FCttTtt22B.1.4940.068966
ORF1ab/nsp31328L1328HcTtcAt22B.1.5260.000047
ORF1ab/nsp31328L1328FCttTtt22B.1.5610.000794
ORF1ab/nsp31328L1328FCttTtt22B.1.5750.000607
ORF1ab/nsp31328L1328FCttTtt22B.1.6370.000146
ORF1ab/nsp31328L1328FCttTtt22B.470.040816
ORF1ab/nsp31328L1328FCttTtt22C.36.30.001134
ORF1ab/nsp31328L1328FCttTtt22C.36.3.10.005435
ORF1ab/nsp31328L1328FCttTtt22P.1.70.000639
ORF1ab/nsp31328L1328LctTctC110.055556
ORF1ab/nsp31328L1328FCttTtt11A.10.000282
ORF1ab/nsp31328L1328FCttTtt11A.20.000662
ORF1ab/nsp31328L1328PcTtcCt11A.2.5.10.004808
ORF1ab/nsp31328L1328delCTT---11A.210.00277
ORF1ab/nsp31328L1328FCttTtt11AE.80.000489
ORF1ab/nsp31328L1328GCTTGGG11All0
ORF1ab/nsp31328L1328TCTtACt11All0
ORF1ab/nsp31328L1328FCttTtt11AU.10.001266
ORF1ab/nsp31328L1328FCttTtt11AY.1010.00049
ORF1ab/nsp31328L1328HcTtcAt11AY.1020.000027
ORF1ab/nsp31328L1328LctTctC11AY.1020.000027
ORF1ab/nsp31328L1328ICttAtt11AY.1030.000006
ORF1ab/nsp31328L1328LctTctC11AY.1030.000006
ORF1ab/nsp31328L1328FCttTtt11AY.1050.000643
ORF1ab/nsp31328L1328FCttTtt11AY.1080.001103
ORF1ab/nsp31328L1328VCtTGtG11AY.1130.000142
ORF1ab/nsp31328L1328FCttTtt11AY.1140.000231
ORF1ab/nsp31328L1328FCttTtt11AY.1160.000287
ORF1ab/nsp31328L1328del1Ctt-tt11AY.1190.000035
ORF1ab/nsp31328L1328FCttTtt11AY.120.10.000321
ORF1ab/nsp31328L1328del1CTt-Ct11AY.120.10.000321
ORF1ab/nsp31328L1328FCttTtt11AY.130.000161
ORF1ab/nsp31328L1328delCTT---11AY.190.00114
ORF1ab/nsp31328L1328PcTtcCt11AY.230.00007
ORF1ab/nsp31328L1328LctTctC11AY.250.000006
ORF1ab/nsp31328L1328RcTtcGt11AY.250.000006
ORF1ab/nsp31328L1328LctTctC11AY.260.000028
ORF1ab/nsp31328L1328ICttAtt11AY.270.000065
ORF1ab/nsp31328L1328ICttAtt11AY.30.00001
ORF1ab/nsp31328L1328del1Ctt-tt11AY.30.00001
ORF1ab/nsp31328L1328delCTT---11AY.30.00001
ORF1ab/nsp31328L1328LctTctC11AY.300.000396
ORF1ab/nsp31328L1328FCttTtt11AY.340.000097
ORF1ab/nsp31328L1328FCttTtt11AY.34.10.00051
ORF1ab/nsp31328L1328delCTT---11AY.360.000148
ORF1ab/nsp31328L1328FCttTtt11AY.360.000148
ORF1ab/nsp31328L1328VCttGtt11AY.390.000025
ORF1ab/nsp31328L1328PcTtcCt11AY.39.10.00004
ORF1ab/nsp31328L1328RcTtcGt11AY.40.000002
ORF1ab/nsp31328L1328FCttTtt11AY.4.40.000409
ORF1ab/nsp31328L1328PcTtcCt11AY.4.50.000107
ORF1ab/nsp31328L1328FCttTtt11AY.410.000294
ORF1ab/nsp31328L1328FCttTtt11AY.420.00004
ORF1ab/nsp31328L1328RcTtcGt11AY.430.000004
ORF1ab/nsp31328L1328delCTT---11AY.440.000006
ORF1ab/nsp31328L1328PcTtcCt11AY.450.000122
ORF1ab/nsp31328L1328RcTtcGt11AY.460.000104
ORF1ab/nsp31328L1328delCTT---11AY.46.20.000635
ORF1ab/nsp31328L1328FCttTtt11AY.46.40.000165
ORF1ab/nsp31328L1328ICttAtt11AY.470.000031
ORF1ab/nsp31328L1328LctTctC11AY.470.000031
ORF1ab/nsp31328L1328FCttTtt11AY.510.000909
ORF1ab/nsp31328L1328FCttTtt11AY.520.000814
ORF1ab/nsp31328L1328FCttTtt11AY.530.000288
ORF1ab/nsp31328L1328ICttAtt11AY.580.000907
ORF1ab/nsp31328L1328delCTT---11AY.60.000041
ORF1ab/nsp31328L1328delCTT---11AY.600.000938
ORF1ab/nsp31328L1328LctTctA11AY.610.000105
ORF1ab/nsp31328L1328delCTT---11AY.70.000196
ORF1ab/nsp31328L1328FCttTtt11AY.7.20.000559
ORF1ab/nsp31328L1328FCttTtt11AY.710.000475
ORF1ab/nsp31328L1328delCTT---11AY.720.001361
ORF1ab/nsp31328L1328delCTT---11AY.750.000056
ORF1ab/nsp31328L1328SCTtTCt11AY.820.001357
ORF1ab/nsp31328L1328delCTT---11AY.840.000437
ORF1ab/nsp31328L1328FCttTtt11AY.840.000437
ORF1ab/nsp31328L1328FCttTtt11AY.90.000068
ORF1ab/nsp31328L1328delCTT---11AY.90.000068
ORF1ab/nsp31328L1328LCtTTtA11AY.9.20.000037
ORF1ab/nsp31328L1328LctTctC11AY.9.2.10.001976
ORF1ab/nsp31328L1328FCttTtt11AY.950.000761
ORF1ab/nsp31328L1328FCttTtt11AY.970.001701
ORF1ab/nsp31328L1328FCttTtt11AY.980.000079
ORF1ab/nsp31328L1328RcTtcGt11AY.980.000079
ORF1ab/nsp31328L1328delCTT---11AY.990.001049
ORF1ab/nsp31328L1328delCTT---11AY.99.10.001553
ORF1ab/nsp31328L1328LctTctA11B.10.000009
ORF1ab/nsp31328L1328VCtTGtG11B.10.000009
ORF1ab/nsp31328L1328PcTtcCt11B.10.000009
ORF1ab/nsp31328L1328ICttAtt11B.10.000009
ORF1ab/nsp31328L1328ACTtGCt11B.10.000009
ORF1ab/nsp31328L1328PcTtcCt11B.1.10.000018
ORF1ab/nsp31328L1328FCttTtt11B.1.1.1890.001513
ORF1ab/nsp31328L1328FCttTtt11B.1.1.2070.001182
ORF1ab/nsp31328L1328FCttTtt11B.1.1.2550.00303
ORF1ab/nsp31328L1328FCttTtt11B.1.1.270.00565
ORF1ab/nsp31328L1328delCTT---11B.1.1.2840.000107
ORF1ab/nsp31328L1328delCTT---11B.1.1.3110.000358
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3110.000358
ORF1ab/nsp31328L1328delCTT---11B.1.1.3120.001912
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3150.008475
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3170.000412
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3370.003597
ORF1ab/nsp31328L1328delCTT---11B.1.1.3480.000796
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3480.000796
ORF1ab/nsp31328L1328delCTT---11B.1.1.370.000193
ORF1ab/nsp31328L1328PcTtcCt11B.1.1.3720.000689
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3720.000689
ORF1ab/nsp31328L1328FCttTtt11B.1.1.3980.003226
ORF1ab/nsp31328L1328FCttTtt11B.1.1.400.034483
ORF1ab/nsp31328L1328delCTT---11B.1.1.4090.002833
ORF1ab/nsp31328L1328FCttTtt11B.1.1.4660.008696
ORF1ab/nsp31328L1328FCttTtt11B.1.1.500.000679
ORF1ab/nsp31328L1328PcTtcCt11B.1.1.500.000679
ORF1ab/nsp31328L1328FCttTtt11B.1.1.5230.001563
ORF1ab/nsp31328L1328SCTTAGC11B.1.1.70.000001
ORF1ab/nsp31328L1328del2cTTc--11B.1.1.70.000001
ORF1ab/nsp31328L1328FCttTtt11B.1.1.740.00431
ORF1ab/nsp31328L1328FCttTtt11B.1.1390.000733
ORF1ab/nsp31328L1328delCTT---11B.1.1600.000031
ORF1ab/nsp31328L1328PcTtcCt11B.1.160.140.002119
ORF1ab/nsp31328L1328FCttTtt11B.1.1730.026316
ORF1ab/nsp31328L1328HcTtcAt11B.1.1770.000013
ORF1ab/nsp31328L1328PcTtcCt11B.1.1770.000013
ORF1ab/nsp31328L1328FCttTtt11B.1.177.100.000878
ORF1ab/nsp31328L1328FCttTtt11B.1.177.110.001698
ORF1ab/nsp31328L1328delCTT---11B.1.177.150.000631
ORF1ab/nsp31328L1328FCttTtt11B.1.177.150.000631
ORF1ab/nsp31328L1328del2cTTc--11B.1.177.160.000664
ORF1ab/nsp31328L1328FCttTtt11B.1.177.240.001295
ORF1ab/nsp31328L1328ICttAtt11B.1.177.40.000211
ORF1ab/nsp31328L1328FCttTtt11B.1.177.410.0025
ORF1ab/nsp31328L1328FCttTtt11B.1.177.430.001477
ORF1ab/nsp31328L1328delCTT---11B.1.177.580.001332
ORF1ab/nsp31328L1328FCttTtt11B.1.177.580.001332
ORF1ab/nsp31328L1328FCttTtt11B.1.177.590.016129
ORF1ab/nsp31328L1328delCTT---11B.1.177.60.000977
ORF1ab/nsp31328L1328delCTT---11B.1.177.690.001484
ORF1ab/nsp31328L1328delCTT---11B.1.177.70.000165
ORF1ab/nsp31328L1328FCttTtt11B.1.177.80.000752
ORF1ab/nsp31328L1328delCTT---11B.1.177.810.000189
ORF1ab/nsp31328L1328delCTT---11B.1.177.870.000728
ORF1ab/nsp31328L1328delCTT---11B.1.2100.002132
ORF1ab/nsp31328L1328FCttTtt11B.1.2360.002053
ORF1ab/nsp31328L1328ICttAtt11B.1.2430.00007
ORF1ab/nsp31328L1328delCTT---11B.1.258.100.011364
ORF1ab/nsp31328L1328PcTtcCt11B.1.258.170.000104
ORF1ab/nsp31328L1328FCttTtt11B.1.258.170.000104
ORF1ab/nsp31328L1328FCttTtt11B.1.264.10.047619
ORF1ab/nsp31328L1328FCttTtt11B.1.3130.006579
ORF1ab/nsp31328L1328FCttTtt11B.1.3380.008621
ORF1ab/nsp31328L1328FCttTtt11B.1.351.50.0006
ORF1ab/nsp31328L1328ICttAtt11B.1.360.000146
ORF1ab/nsp31328L1328FCttTtt11B.1.36.80.001
ORF1ab/nsp31328L1328PcTtcCt11B.1.3690.000285
ORF1ab/nsp31328L1328ICttAtt11B.1.3690.000285
ORF1ab/nsp31328L1328SCTtTCt11B.1.3690.000285
ORF1ab/nsp31328L1328FCttTtt11B.1.3750.00082
ORF1ab/nsp31328L1328FCttTtt11B.1.3980.002976
ORF1ab/nsp31328L1328LctTctC11B.1.4090.000781
ORF1ab/nsp31328L1328FCttTtt11B.1.4160.001269
ORF1ab/nsp31328L1328FCttTtt11B.1.4200.010417
ORF1ab/nsp31328L1328FCttTtt11B.1.4380.006536
ORF1ab/nsp31328L1328FCttTtt11B.1.438.40.021277
ORF1ab/nsp31328L1328FCttTtt11B.1.4560.003268
ORF1ab/nsp31328L1328FCttTtt11B.1.5130.013889
ORF1ab/nsp31328L1328FCttTtt11B.1.5250.000113
ORF1ab/nsp31328L1328FCttTtt11B.1.5360.02381
ORF1ab/nsp31328L1328PcTtcCt11B.1.5820.000491
ORF1ab/nsp31328L1328LctTctC11B.1.5960.000087
ORF1ab/nsp31328L1328FCttTtt11B.1.6090.000479
ORF1ab/nsp31328L1328PcTtcCt11B.1.617.10.000129
ORF1ab/nsp31328L1328GCTTGGG11B.1.617.20.000004
ORF1ab/nsp31328L1328del1Ctt-tt11B.1.617.20.000004
ORF1ab/nsp31328L1328ACTTGCG11B.1.617.20.000004
ORF1ab/nsp31328L1328TCTtACt11B.1.617.20.000004
ORF1ab/nsp31328L1328VCtTGtG11B.1.617.20.000004
ORF1ab/nsp31328L1328FCttTtt11B.1.617.30.002985
ORF1ab/nsp31328L1328delCTT---11B.1.6210.000089
ORF1ab/nsp31328L1328delCTT---11B.1.6300.005236
ORF1ab/nsp31328L1328FCttTtt11B.4.40.018868
ORF1ab/nsp31328L1328FCttTtt11B.60.00091
ORF1ab/nsp31328L1328FCttTtt11B.6.60.000889
ORF1ab/nsp31328L1328PcTtcCt11B.6.60.000889
ORF1ab/nsp31328L1328FCttTtt11C.10.002392
ORF1ab/nsp31328L1328delCTT---11C.350.000774
ORF1ab/nsp31328L1328FCttTtt11C.350.000774
ORF1ab/nsp31328L1328PcTtcCt11D.20.000075
ORF1ab/nsp31328L1328SCTtTCt11D.20.000075
ORF1ab/nsp31328L1328FCttTtt11N.50.001767
ORF1ab/nsp31328L1328delCTT---11P.10.000016
ORF1ab/nsp31328L1328FCttTtt11P.1.10.000318
ORF1ab/nsp31328L1328FCttTtt11P.1.100.000269
ORF1ab/nsp31328L1328ICttAtt11P.1.140.000048
ORF1ab/nsp31328L1328delCTT---11P.1.150.000232
ORF1ab/nsp31328L1328FCttTtt11P.1.170.000162
ORF1ab/nsp31328L1328FCttTtt11P.1.17.10.000875
ORF1ab/nsp31328L1328FCttTtt11Q.10.000126
ORF1ab/nsp31328L1328delCTT---11Q.10.000126
ORF1ab/nsp31328L1328ICttAtt11Q.40.000455
ORF1ab/nsp31328L1328delCTT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.