CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1326 & Codon = ccG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31326P1326PP2144PsynccTccG147300.2040826695-6697

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31326P1326PccTccG30147All0.000006
ORF1ab/nsp31326P1326PccTccG711B.1.617.20.000026
ORF1ab/nsp31326P1326PccTccG711P.10.00011
ORF1ab/nsp31326P1326PccTccG14AY.250.000006
ORF1ab/nsp31326P1326PccTccG23AY.1020.000053
ORF1ab/nsp31326P1326PccTccG33AY.46.60.000217
ORF1ab/nsp31326P1326PccTccG22AY.390.000049
ORF1ab/nsp31326P1326PccTccG11AY.1030.000006
ORF1ab/nsp31326P1326PccTccG11AY.1210.000135
ORF1ab/nsp31326P1326PccTccG11AY.4.50.000107
ORF1ab/nsp31326P1326PccTccG11AY.450.000122
ORF1ab/nsp31326P1326PccTccG11AY.780.001541
ORF1ab/nsp31326P1326PccTccG11B0.000128
ORF1ab/nsp31326P1326PccTccG11B.1.2580.000067
ORF1ab/nsp31326P1326PccTccG11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.