CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1326

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1326	P1326L	P2144L	nonsyn	cCt	cTt	2440	2440	1	6695-6697
ORF1ab/nsp3	1326	P1326S	P2144S	nonsyn	Cct	Tct	1125	1120	0.995556	6695-6697
ORF1ab/nsp3	1326	P1326S	P2144S	nonsyn	CcT	TcC	1125	2	0.00177778	6695-6697
ORF1ab/nsp3	1326	P1326S	P2144S	nonsyn	CCt	AGt	1125	2	0.00177778	6695-6697
ORF1ab/nsp3	1326	P1326S	P2144S	nonsyn	CcT	TcG	1125	1	0.000888889	6695-6697
ORF1ab/nsp3	1326	P1326del	P2144del	del	CCT	---	214	214	1	6695-6697
ORF1ab/nsp3	1326	P1326P	P2144P	syn	ccT	ccC	147	110	0.748299	6695-6697
ORF1ab/nsp3	1326	P1326P	P2144P	syn	ccT	ccG	147	30	0.204082	6695-6697
ORF1ab/nsp3	1326	P1326P	P2144P	syn	ccT	ccA	147	7	0.047619	6695-6697
ORF1ab/nsp3	1326	P1326H	P2144H	nonsyn	cCt	cAt	146	146	1	6695-6697
ORF1ab/nsp3	1326	P1326T	P2144T	nonsyn	Cct	Act	89	89	1	6695-6697
ORF1ab/nsp3	1326	P1326R	P2144R	nonsyn	cCt	cGt	24	22	0.916667	6695-6697
ORF1ab/nsp3	1326	P1326R	P2144R	nonsyn	cCT	cGC	24	1	0.0416667	6695-6697
ORF1ab/nsp3	1326	P1326R	P2144R	nonsyn	cCT	cGG	24	1	0.0416667	6695-6697
ORF1ab/nsp3	1326	P1326del1	P2144del1	del	ccT	cc-	10	9	0.9	6695-6697
ORF1ab/nsp3	1326	P1326del1	P2144del1	del	Cct	-ct	10	1	0.1	6695-6697
ORF1ab/nsp3	1326	P1326del2	P2144del2	del	cCT	c--	5	5	1	6695-6697
ORF1ab/nsp3	1326	P1326W	P2144W	nonsyn	CCT	TGG	1	1	1	6695-6697
ORF1ab/nsp3	1326	P1326A	P2144A	nonsyn	Cct	Gct	1	1	1	6695-6697
ORF1ab/nsp3	1326	P1326N	P2144N	nonsyn	CCt	AAt	1	1	1	6695-6697
ORF1ab/nsp3	1326	P1326G	P2144G	nonsyn	CCT	GGG	1	1	1	6695-6697
ORF1ab/nsp3	1326	P1326F	P2144F	nonsyn	CCt	TTt	1	1	1	6695-6697

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2440	2440	All	0.000467
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1120	1125	All	0.000214
ORF1ab/nsp3	1326	P1326S	CcT	TcC	2	1125	All	0
ORF1ab/nsp3	1326	P1326S	CCt	AGt	2	1125	All	0
ORF1ab/nsp3	1326	P1326S	CcT	TcG	1	1125	All	0
ORF1ab/nsp3	1326	P1326L	cCt	cTt	797	797	B.1.1.7	0.000713
ORF1ab/nsp3	1326	P1326del	CCT	---	214	214	All	0.000041
ORF1ab/nsp3	1326	P1326S	Cct	Tct	209	210	B.1.1.7	0.000187
ORF1ab/nsp3	1326	P1326S	CcT	TcC	1	210	B.1.1.7	0.000001
ORF1ab/nsp3	1326	P1326L	cCt	cTt	194	194	B.1.243	0.013499
ORF1ab/nsp3	1326	P1326S	Cct	Tct	193	193	AY.43	0.000855
ORF1ab/nsp3	1326	P1326L	cCt	cTt	155	155	B.1.258	0.010315
ORF1ab/nsp3	1326	P1326S	Cct	Tct	153	153	AY.4	0.000238
ORF1ab/nsp3	1326	P1326P	ccT	ccC	110	147	All	0.000021
ORF1ab/nsp3	1326	P1326P	ccT	ccG	30	147	All	0.000006
ORF1ab/nsp3	1326	P1326P	ccT	ccA	7	147	All	0.000001
ORF1ab/nsp3	1326	P1326H	cCt	cAt	146	146	All	0.000028
ORF1ab/nsp3	1326	P1326L	cCt	cTt	144	144	B.1	0.001319
ORF1ab/nsp3	1326	P1326L	cCt	cTt	121	121	B.10	1
ORF1ab/nsp3	1326	P1326L	cCt	cTt	106	106	B.1.1	0.001923
ORF1ab/nsp3	1326	P1326del	CCT	---	94	94	B.1.1.7	0.000084
ORF1ab/nsp3	1326	P1326S	Cct	Tct	90	90	B.1.177.9	0.11984
ORF1ab/nsp3	1326	P1326T	Cct	Act	89	89	All	0.000017
ORF1ab/nsp3	1326	P1326L	cCt	cTt	75	75	B.1.1.284	0.008055
ORF1ab/nsp3	1326	P1326L	cCt	cTt	69	69	AY.4	0.000107
ORF1ab/nsp3	1326	P1326S	Cct	Tct	69	69	AY.4.2	0.001497
ORF1ab/nsp3	1326	P1326S	Cct	Tct	59	59	B.1.2	0.00052
ORF1ab/nsp3	1326	P1326L	cCt	cTt	54	54	B.1.617.2	0.000203
ORF1ab/nsp3	1326	P1326S	Cct	Tct	43	43	AY.44	0.000262
ORF1ab/nsp3	1326	P1326L	cCt	cTt	41	41	B.1.1.434	0.014291
ORF1ab/nsp3	1326	P1326S	Cct	Tct	38	40	B.1.617.2	0.000143
ORF1ab/nsp3	1326	P1326S	CCt	AGt	1	40	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326S	CcT	TcG	1	40	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326L	cCt	cTt	36	36	AY.43	0.000159
ORF1ab/nsp3	1326	P1326L	cCt	cTt	34	34	AY.69	0.006347
ORF1ab/nsp3	1326	P1326L	cCt	cTt	30	30	Q.2	0.018405
ORF1ab/nsp3	1326	P1326L	cCt	cTt	27	27	AY.25	0.000162
ORF1ab/nsp3	1326	P1326T	Cct	Act	27	27	B.1.1.7	0.000024
ORF1ab/nsp3	1326	P1326R	cCt	cGt	22	24	All	0.000004
ORF1ab/nsp3	1326	P1326R	cCT	cGC	1	24	All	0
ORF1ab/nsp3	1326	P1326R	cCT	cGG	1	24	All	0
ORF1ab/nsp3	1326	P1326P	ccT	ccC	23	23	AY.44	0.00014
ORF1ab/nsp3	1326	P1326L	cCt	cTt	21	21	B.1.36	0.003064
ORF1ab/nsp3	1326	P1326T	Cct	Act	20	20	B.1.609	0.009588
ORF1ab/nsp3	1326	P1326L	cCt	cTt	19	19	AY.39	0.00047
ORF1ab/nsp3	1326	P1326L	cCt	cTt	19	19	B.1.177	0.00025
ORF1ab/nsp3	1326	P1326del	CCT	---	18	18	AY.43	0.00008
ORF1ab/nsp3	1326	P1326H	cCt	cAt	18	18	B.1.1.7	0.000016
ORF1ab/nsp3	1326	P1326L	cCt	cTt	18	18	B.1.2	0.000158
ORF1ab/nsp3	1326	P1326L	cCt	cTt	18	18	D.2	0.001351
ORF1ab/nsp3	1326	P1326L	cCt	cTt	17	17	AY.102	0.000451
ORF1ab/nsp3	1326	P1326H	cCt	cAt	17	17	AY.25	0.000102
ORF1ab/nsp3	1326	P1326L	cCt	cTt	16	16	AY.3	0.000159
ORF1ab/nsp3	1326	P1326T	Cct	Act	15	15	A.1	0.004228
ORF1ab/nsp3	1326	P1326H	cCt	cAt	15	15	AY.54	0.00143
ORF1ab/nsp3	1326	P1326S	Cct	Tct	15	15	B.1.177.77	0.010893
ORF1ab/nsp3	1326	P1326L	cCt	cTt	15	15	B.1.240	0.003233
ORF1ab/nsp3	1326	P1326L	cCt	cTt	14	14	AY.103	0.000087
ORF1ab/nsp3	1326	P1326S	Cct	Tct	14	14	AY.39	0.000346
ORF1ab/nsp3	1326	P1326del	CCT	---	14	14	AY.4	0.000022
ORF1ab/nsp3	1326	P1326S	Cct	Tct	14	14	B.1	0.000128
ORF1ab/nsp3	1326	P1326P	ccT	ccC	14	14	B.1.1.7	0.000013
ORF1ab/nsp3	1326	P1326L	cCt	cTt	14	14	B.1.1.70	0.004775
ORF1ab/nsp3	1326	P1326L	cCt	cTt	14	14	B.1.110.3	0.010057
ORF1ab/nsp3	1326	P1326del	CCT	---	14	14	B.1.177	0.000184
ORF1ab/nsp3	1326	P1326L	cCt	cTt	14	14	B.1.36.29	0.007243
ORF1ab/nsp3	1326	P1326R	cCt	cGt	12	13	B.1.1.7	0.000011
ORF1ab/nsp3	1326	P1326R	cCT	cGG	1	13	B.1.1.7	0.000001
ORF1ab/nsp3	1326	P1326S	Cct	Tct	12	12	AY.102	0.000318
ORF1ab/nsp3	1326	P1326S	Cct	Tct	12	12	AY.103	0.000075
ORF1ab/nsp3	1326	P1326L	cCt	cTt	12	12	B.1.160	0.000374
ORF1ab/nsp3	1326	P1326S	Cct	Tct	12	12	C.37	0.001393
ORF1ab/nsp3	1326	P1326L	cCt	cTt	11	11	AY.98.1	0.000533
ORF1ab/nsp3	1326	P1326L	cCt	cTt	11	11	B.1.517	0.004697
ORF1ab/nsp3	1326	P1326P	ccT	ccG	7	11	B.1.617.2	0.000026
ORF1ab/nsp3	1326	P1326P	ccT	ccC	4	11	B.1.617.2	0.000015
ORF1ab/nsp3	1326	P1326P	ccT	ccG	7	11	P.1	0.00011
ORF1ab/nsp3	1326	P1326P	ccT	ccC	3	11	P.1	0.000047
ORF1ab/nsp3	1326	P1326P	ccT	ccA	1	11	P.1	0.000016
ORF1ab/nsp3	1326	P1326L	cCt	cTt	11	11	P.2	0.002053
ORF1ab/nsp3	1326	P1326del1	ccT	cc-	9	10	All	0.000002
ORF1ab/nsp3	1326	P1326del1	Cct	-ct	1	10	All	0
ORF1ab/nsp3	1326	P1326H	cCt	cAt	10	10	B.1.564.1	0.015773
ORF1ab/nsp3	1326	P1326H	cCt	cAt	10	10	B.1.617.2	0.000038
ORF1ab/nsp3	1326	P1326L	cCt	cTt	10	10	B.55	0.029499
ORF1ab/nsp3	1326	P1326L	cCt	cTt	9	9	AY.39.1	0.000357
ORF1ab/nsp3	1326	P1326P	ccT	ccC	9	9	AY.4	0.000014
ORF1ab/nsp3	1326	P1326S	Cct	Tct	9	9	B.1.1.37	0.001736
ORF1ab/nsp3	1326	P1326L	cCt	cTt	9	9	B.1.1.47	0.048128
ORF1ab/nsp3	1326	P1326L	cCt	cTt	8	8	AE.8	0.003912
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	AY.116	0.002294
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	AY.37	0.002528
ORF1ab/nsp3	1326	P1326L	cCt	cTt	8	8	AY.44	0.000049
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	AY.47	0.000249
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	AY.69	0.001493
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	B.1.1	0.000145
ORF1ab/nsp3	1326	P1326S	Cct	Tct	8	8	B.1.1.519	0.000318
ORF1ab/nsp3	1326	P1326R	cCt	cGt	8	8	B.1.525	0.000905
ORF1ab/nsp3	1326	P1326L	cCt	cTt	8	8	B.1.614	1
ORF1ab/nsp3	1326	P1326del	CCT	---	8	8	B.1.617.2	0.00003
ORF1ab/nsp3	1326	P1326S	Cct	Tct	7	7	AY.3	0.00007
ORF1ab/nsp3	1326	P1326H	cCt	cAt	7	7	AY.4	0.000011
ORF1ab/nsp3	1326	P1326H	cCt	cAt	7	7	AY.44	0.000043
ORF1ab/nsp3	1326	P1326L	cCt	cTt	7	7	AY.61	0.000733
ORF1ab/nsp3	1326	P1326L	cCt	cTt	7	7	B	0.000895
ORF1ab/nsp3	1326	P1326H	cCt	cAt	7	7	B.1.177.35	0.004838
ORF1ab/nsp3	1326	P1326L	cCt	cTt	7	7	B.1.210	0.014925
ORF1ab/nsp3	1326	P1326L	cCt	cTt	7	7	B.1.234	0.000924
ORF1ab/nsp3	1326	P1326L	cCt	cTt	7	7	B.27	0.107692
ORF1ab/nsp3	1326	P1326H	cCt	cAt	6	6	AY.106	0.002009
ORF1ab/nsp3	1326	P1326S	Cct	Tct	6	6	AY.119	0.000212
ORF1ab/nsp3	1326	P1326del	CCT	---	6	6	AY.4.5	0.000645
ORF1ab/nsp3	1326	P1326H	cCt	cAt	6	6	AY.43	0.000027
ORF1ab/nsp3	1326	P1326L	cCt	cTt	6	6	AY.9.2	0.00022
ORF1ab/nsp3	1326	P1326S	Cct	Tct	6	6	B	0.000767
ORF1ab/nsp3	1326	P1326del1	ccT	cc-	6	6	B.1.1.7	0.000005
ORF1ab/nsp3	1326	P1326H	cCt	cAt	6	6	B.1.177	0.000079
ORF1ab/nsp3	1326	P1326P	ccT	ccC	6	6	B.1.427	0.000303
ORF1ab/nsp3	1326	P1326del2	cCT	c--	5	5	All	0.000001
ORF1ab/nsp3	1326	P1326S	Cct	Tct	5	5	AY.23	0.000349
ORF1ab/nsp3	1326	P1326T	Cct	Act	5	5	AY.29	0.000079
ORF1ab/nsp3	1326	P1326L	cCt	cTt	5	5	AY.5	0.000103
ORF1ab/nsp3	1326	P1326P	ccT	ccC	5	5	B.1	0.000046
ORF1ab/nsp3	1326	P1326S	Cct	Tct	5	5	B.1.258.17	0.00052
ORF1ab/nsp3	1326	P1326L	cCt	cTt	5	5	B.1.429	0.000118
ORF1ab/nsp3	1326	P1326S	Cct	Tct	5	5	P.1	0.000079
ORF1ab/nsp3	1326	P1326L	cCt	cTt	5	5	P.1.14	0.000239
ORF1ab/nsp3	1326	P1326P	ccT	ccC	4	4	AY.100	0.000184
ORF1ab/nsp3	1326	P1326H	cCt	cAt	4	4	AY.111	0.000733
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	AY.119	0.000141
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	AY.23	0.000279
ORF1ab/nsp3	1326	P1326P	ccT	ccA	2	4	AY.25	0.000012
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	4	AY.25	0.000006
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	4	AY.25	0.000006
ORF1ab/nsp3	1326	P1326H	cCt	cAt	4	4	AY.3	0.00004
ORF1ab/nsp3	1326	P1326S	Cct	Tct	4	4	AY.36	0.000593
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	AY.53	0.00115
ORF1ab/nsp3	1326	P1326S	Cct	Tct	4	4	B.1.1.153	0.004381
ORF1ab/nsp3	1326	P1326P	ccT	ccC	4	4	B.1.1.214	0.000222
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	B.1.177.43	0.005908
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	B.1.526	0.000094
ORF1ab/nsp3	1326	P1326T	Cct	Act	4	4	B.1.637	0.000292
ORF1ab/nsp3	1326	P1326L	cCt	cTt	4	4	P.1	0.000063
ORF1ab/nsp3	1326	P1326P	ccT	ccG	2	3	AY.102	0.000053
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	3	AY.102	0.000027
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	AY.117	0.000254
ORF1ab/nsp3	1326	P1326H	cCt	cAt	3	3	AY.14	0.000264
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	AY.20	0.000117
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	3	AY.20	0.000078
ORF1ab/nsp3	1326	P1326P	ccT	ccA	1	3	AY.20	0.000039
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	AY.25	0.000018
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	AY.27	0.000194
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	AY.4.2	0.000065
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	AY.45	0.000365
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	AY.46.6	0.000217
ORF1ab/nsp3	1326	P1326P	ccT	ccG	3	3	AY.46.6	0.000217
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	AY.55	0.002752
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	AY.75.1	0.000541
ORF1ab/nsp3	1326	P1326H	cCt	cAt	3	3	AY.98.1	0.000145
ORF1ab/nsp3	1326	P1326del	CCT	---	3	3	B.1	0.000027
ORF1ab/nsp3	1326	P1326T	Cct	Act	3	3	B.1	0.000027
ORF1ab/nsp3	1326	P1326del	CCT	---	3	3	B.1.1	0.000054
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.1.214	0.000166
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.1.222	0.000612
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.1.33	0.001263
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.1.519	0.000119
ORF1ab/nsp3	1326	P1326del2	cCT	c--	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	B.1.160	0.000094
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	3	B.1.2	0.000018
ORF1ab/nsp3	1326	P1326P	ccT	ccA	1	3	B.1.2	0.000009
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	B.1.36	0.000438
ORF1ab/nsp3	1326	P1326del	CCT	---	3	3	B.1.36.17	0.001482
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.438.1	0.000322
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	B.1.541	0.013274
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.595	0.000783
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.596	0.000261
ORF1ab/nsp3	1326	P1326T	Cct	Act	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	B.1.621	0.000266
ORF1ab/nsp3	1326	P1326S	Cct	Tct	3	3	B.1.637	0.000219
ORF1ab/nsp3	1326	P1326L	cCt	cTt	3	3	C.14	0.012987
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	2		0.055556
ORF1ab/nsp3	1326	P1326S	CcT	TcC	1	2		0.055556
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	A.1	0.000564
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	A.2.5	0.000998
ORF1ab/nsp3	1326	P1326H	cCt	cAt	2	2	AY.102	0.000053
ORF1ab/nsp3	1326	P1326H	cCt	cAt	2	2	AY.103	0.000012
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	AY.104	0.003968
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	AY.106	0.00067
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.114	0.000462
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.120	0.000074
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.16.1	0.00094
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.24	0.000862
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	AY.25	0.000012
ORF1ab/nsp3	1326	P1326H	cCt	cAt	2	2	AY.29	0.000032
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	AY.29	0.000032
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.3.1	0.000171
ORF1ab/nsp3	1326	P1326P	ccT	ccG	2	2	AY.39	0.000049
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	AY.39.1	0.000079
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.42	0.00008
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	AY.43	0.000009
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.46	0.000208
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	AY.47	0.000062
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	AY.5	0.000041
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	AY.59	0.001059
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.59	0.001059
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.6	0.000082
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	AY.6	0.000082
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.74	0.000231
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AY.75	0.000112
ORF1ab/nsp3	1326	P1326T	Cct	Act	2	2	AY.9.2	0.000073
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	AZ.5	0.007018
ORF1ab/nsp3	1326	P1326H	cCt	cAt	2	2	B.1	0.000018
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	B.1.1	0.000036
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	B.1.1.1	0.000653
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.1.39	0.001019
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.1.398	0.006452
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.1.526	0.007092
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.157	0.00597
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	B.1.177	0.000026
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	B.1.177.16	0.001329
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	B.1.177.17	0.001642
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	B.1.177.18	0.00232
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	B.1.177.56	0.001335
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.221	0.000142
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	B.1.221	0.000142
ORF1ab/nsp3	1326	P1326del	CCT	---	2	2	B.1.36	0.000292
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.36.17	0.000988
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	B.1.429	0.000047
ORF1ab/nsp3	1326	P1326H	cCt	cAt	2	2	B.1.429	0.000047
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.453	0.006472
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.466.2	0.000782
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	B.1.540	0.019417
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.568	0.002222
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	B.1.576	0.001813
ORF1ab/nsp3	1326	P1326S	Cct	Tct	2	2	B.1.596	0.000174
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	Q.3	0.00029
ORF1ab/nsp3	1326	P1326L	cCt	cTt	2	2	Q.8	0.00033
ORF1ab/nsp3	1326	P1326P	ccT	ccC	2	2	R.1	0.00018
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1		0.055556
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	A	0.000387
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	A.21	0.00277
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	A.3	0.002096
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	A.5	0.001923
ORF1ab/nsp3	1326	P1326W	CCT	TGG	1	1	All	0
ORF1ab/nsp3	1326	P1326F	CCt	TTt	1	1	All	0
ORF1ab/nsp3	1326	P1326G	CCT	GGG	1	1	All	0
ORF1ab/nsp3	1326	P1326A	Cct	Gct	1	1	All	0
ORF1ab/nsp3	1326	P1326N	CCt	AAt	1	1	All	0
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AN.1	0.02
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	AV.1	0.005051
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AW.1	0.003049
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.100	0.000046
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	AY.100	0.000046
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.100	0.000046
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	AY.103	0.000006
ORF1ab/nsp3	1326	P1326del1	ccT	cc-	1	1	AY.103	0.000006
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.105	0.000643
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.111	0.000183
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.113	0.000142
ORF1ab/nsp3	1326	P1326S	CCt	AGt	1	1	AY.113	0.000142
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.116	0.000287
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.117	0.000085
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.118	0.000063
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	AY.119	0.000035
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.120.1	0.000321
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	AY.121	0.000135
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.14	0.000088
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.16.1	0.00047
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.19	0.00114
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.19	0.00114
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.20	0.000039
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.23.1	0.000417
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	AY.25	0.000006
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.27	0.000065
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.29	0.000016
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.3	0.00001
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.33	0.000067
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.34	0.000097
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.34	0.000097
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.36	0.000148
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.38	0.000499
ORF1ab/nsp3	1326	P1326R	cCt	cGt	1	1	AY.39	0.000025
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	AY.4	0.000002
ORF1ab/nsp3	1326	P1326A	Cct	Gct	1	1	AY.4	0.000002
ORF1ab/nsp3	1326	P1326del1	Cct	-ct	1	1	AY.4	0.000002
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	AY.4.2	0.000022
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	AY.43	0.000004
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	AY.44	0.000006
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.44	0.000006
ORF1ab/nsp3	1326	P1326del1	ccT	cc-	1	1	AY.44	0.000006
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	AY.45	0.000122
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.46	0.000104
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	AY.46.1	0.001027
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.46.2	0.000635
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.47	0.000031
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.48	0.000465
ORF1ab/nsp3	1326	P1326P	ccT	ccA	1	1	AY.5	0.000021
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.5	0.000021
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.6	0.000041
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.60	0.000938
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.7	0.000196
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.70	0.000209
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.72	0.001361
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.74	0.000116
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.75	0.000056
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.75	0.000056
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	AY.78	0.001541
ORF1ab/nsp3	1326	P1326R	cCT	cGC	1	1	AY.82	0.001357
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.83	0.001724
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.84	0.000437
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.85	0.000427
ORF1ab/nsp3	1326	P1326N	CCt	AAt	1	1	AY.85	0.000427
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.99	0.001049
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	AY.99.2	0.000092
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AY.99.2	0.000092
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	AZ.2	0.000821
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	B	0.000128
ORF1ab/nsp3	1326	P1326G	CCT	GGG	1	1	B.1	0.000009
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.121	0.002427
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.174	0.003378
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.27	0.00565
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.277	0.000759
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.294	0.001266
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.326	0.001761
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.1.432	0.001266
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.432	0.001266
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.1.434	0.000349
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.434	0.000349
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.486	0.001577
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.514	0.038462
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.1.521	0.005348
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.160	0.000031
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.160	0.000031
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.167	0.007812
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.177	0.000013
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.20	0.001517
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.31	0.011494
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1326	P1326del2	cCT	c--	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.177.42	0.000894
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.58	0.001332
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1326	P1326P	ccT	ccA	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.177.75	0.001041
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.177.86	0.000183
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1326	P1326F	CCt	TTt	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.189	0.004292
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.2	0.000009
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.206	0.000816
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.210	0.002132
ORF1ab/nsp3	1326	P1326H	cCt	cAt	1	1	B.1.221	0.000071
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	B.1.221	0.000071
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.223	0.002778
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.236	0.002053
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.238	0.014925
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.240	0.000216
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.243	0.00007
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.243	0.00007
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	B.1.258	0.000067
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.258	0.000067
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.258.21	0.007752
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.258.3	0.001675
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.311	0.000275
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.329	0.000608
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.338	0.008621
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.35	0.008475
ORF1ab/nsp3	1326	P1326T	Cct	Act	1	1	B.1.351	0.00003
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.351	0.00003
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.351	0.00003
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.351.5	0.0006
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.357	0.009524
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.36.2	0.010753
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.36.37	0.002778
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.375	0.00082
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.383	0.009009
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.395	0.007042
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.396	0.000706
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.404	0.001302
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.429	0.000024
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.453	0.003236
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.456	0.003268
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.493	0.025641
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.524	0.001406
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.525	0.000113
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.525	0.000113
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.526	0.000024
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.538	0.008065
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.560	0.00463
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.582	0.000491
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	B.1.582	0.000491
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.609	0.000479
ORF1ab/nsp3	1326	P1326W	CCT	TGG	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326del1	ccT	cc-	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326R	cCt	cGt	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326del2	cCT	c--	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.625	0.002353
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.628	0.000352
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.632	0.006711
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.1.93	0.000934
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	B.40	0.000364
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	C.1.2	0.004255
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	C.35	0.000774
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	C.37	0.000116
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	D.5	0.004975
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	L.3	0.003546
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	P.1	0.000016
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	P.1.14	0.000048
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	P.1.15	0.000232
ORF1ab/nsp3	1326	P1326P	ccT	ccG	1	1	P.1.15	0.000232
ORF1ab/nsp3	1326	P1326P	ccT	ccC	1	1	P.1.17	0.000162
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	P.1.7	0.000319
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	P.2	0.000187
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	Q.1	0.000126
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	Q.1	0.000126
ORF1ab/nsp3	1326	P1326L	cCt	cTt	1	1	Q.3	0.000145
ORF1ab/nsp3	1326	P1326S	Cct	Tct	1	1	Q.4	0.000455
ORF1ab/nsp3	1326	P1326del	CCT	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.