CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1323 | Y1323del | Y2141del | del | TAT | --- | 753 | 753 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323C | Y2141C | nonsyn | tAt | tGt | 175 | 175 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323Y | Y2141Y | syn | taT | taC | 84 | 84 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323H | Y2141H | nonsyn | Tat | Cat | 54 | 53 | 0.981481 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323H | Y2141H | nonsyn | TaT | CaC | 54 | 1 | 0.0185185 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323D | Y2141D | nonsyn | Tat | Gat | 14 | 14 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323N | Y2141N | nonsyn | Tat | Aat | 9 | 9 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323S | Y2141S | nonsyn | tAt | tCt | 6 | 6 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323F | Y2141F | nonsyn | tAt | tTt | 5 | 5 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323X | Y2141X | nonsyn | taT | taA | 4 | 4 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323del1 | Y2141del1 | del | Tat | -at | 3 | 3 | 1 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323del2 | Y2141del2 | del | tAT | t-- | 3 | 2 | 0.666667 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323del2 | Y2141del2 | del | TAt | --t | 3 | 1 | 0.333333 | 6686-6688 |
ORF1ab/nsp3 | 1323 | Y1323I | Y2141I | nonsyn | TAt | ATt | 1 | 1 | 1 | 6686-6688 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 753 | 753 | All | 0.000144 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 175 | 175 | All | 0.000033 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 116 | 116 | B.1.1.7 | 0.000104 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 93 | 93 | B.1.617.2 | 0.00035 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 84 | 84 | All | 0.000016 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 68 | 68 | AY.103 | 0.000422 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 68 | 68 | AY.44 | 0.000414 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 53 | 54 | All | 0.00001 |
ORF1ab/nsp3 | 1323 | Y1323H | TaT | CaC | 1 | 54 | All | 0 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 49 | 49 | AY.43 | 0.000217 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 22 | 22 | B.1.1.345 | 0.956522 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 14 | 14 | All | 0.000003 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 10 | 10 | AY.34.1 | 0.005099 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1323 | Y1323S | tAt | tCt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1323 | Y1323X | taT | taA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1323 | Y1323del1 | Tat | -at | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323del2 | tAT | t-- | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1323 | Y1323del2 | TAt | --t | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | B.1.1.351 | 0.00838 |
ORF1ab/nsp3 | 1323 | Y1323S | tAt | tCt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1323 | Y1323X | taT | taA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1323 | Y1323I | TAt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1323 | Y1323del2 | TAt | --t | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1323 | Y1323S | tAt | tCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1323 | Y1323del1 | Tat | -at | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1323 | Y1323H | TaT | CaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323S | tAt | tCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1323 | Y1323I | TAt | ATt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1323 | Y1323X | taT | taA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1323 | Y1323del1 | Tat | -at | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1323 | Y1323F | tAt | tTt | 1 | 1 | B.1.1.327 | 0.1 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1323 | Y1323del2 | tAT | t-- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323N | Tat | Aat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323del2 | tAT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1323 | Y1323del1 | Tat | -at | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1323 | Y1323X | taT | taA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1323 | Y1323S | tAt | tCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323X | taT | taA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323D | Tat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1323 | Y1323H | Tat | Cat | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1323 | Y1323C | tAt | tGt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1323 | Y1323Y | taT | taC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1323 | Y1323del | TAT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|