CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1314 | S1314S | S2132S | syn | agT | agC | 22100 | 22100 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314G | S2132G | nonsyn | Agt | Ggt | 2726 | 2725 | 0.999633 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314G | S2132G | nonsyn | AgT | GgA | 2726 | 1 | 0.000366838 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del | S2132del | del | AGT | --- | 1811 | 1811 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314I | S2132I | nonsyn | aGt | aTt | 278 | 277 | 0.996403 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314I | S2132I | nonsyn | aGT | aTA | 278 | 1 | 0.00359712 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314N | S2132N | nonsyn | aGt | aAt | 152 | 152 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314R | S2132R | nonsyn | agT | agG | 64 | 54 | 0.84375 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314R | S2132R | nonsyn | agT | agA | 64 | 8 | 0.125 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314R | S2132R | nonsyn | Agt | Cgt | 64 | 2 | 0.03125 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314C | S2132C | nonsyn | Agt | Tgt | 10 | 10 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del1 | S2132del1 | del | AGT | -NN | 7 | 3 | 0.428571 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del1 | S2132del1 | del | agT | ag- | 7 | 3 | 0.428571 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del1 | S2132del1 | del | AGt | -Tt | 7 | 1 | 0.142857 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del2 | S2132del2 | del | AGT | --N | 2 | 1 | 0.5 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314del2 | S2132del2 | del | aGT | a-- | 2 | 1 | 0.5 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314L | S2132L | nonsyn | AGt | CTt | 1 | 1 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314F | S2132F | nonsyn | AGt | TTt | 1 | 1 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314Y | S2132Y | nonsyn | AGt | TAt | 1 | 1 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314E | S2132E | nonsyn | AGT | GAG | 1 | 1 | 1 | 6659-6661 |
ORF1ab/nsp3 | 1314 | S1314T | S2132T | nonsyn | aGt | aCt | 1 | 1 | 1 | 6659-6661 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 22100 | 22100 | All | 0.004227 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 17032 | 17032 | AY.103 | 0.105753 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2725 | 2726 | All | 0.000521 |
ORF1ab/nsp3 | 1314 | S1314G | AgT | GgA | 1 | 2726 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2268 | 2268 | B.1.617.2 | 0.00854 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1811 | 1811 | All | 0.000346 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1280 | 1280 | AY.120 | 0.047589 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 685 | 685 | B.1.1.7 | 0.000613 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 642 | 642 | AY.39 | 0.015865 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 535 | 535 | AY.4 | 0.000833 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 277 | 278 | All | 0.000053 |
ORF1ab/nsp3 | 1314 | S1314I | aGT | aTA | 1 | 278 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 213 | 213 | AY.42 | 0.008569 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 209 | 209 | AY.46 | 0.021753 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 191 | 191 | AY.44 | 0.001163 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 169 | 169 | B.1.617.2 | 0.000636 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 152 | 152 | All | 0.000029 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 146 | 146 | AY.102 | 0.003871 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 146 | 146 | AY.4 | 0.000227 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 135 | 135 | AY.4 | 0.00021 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 129 | 129 | B.1.1.7 | 0.000115 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 121 | 121 | B.1.243 | 0.00842 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 114 | 114 | B.1.617.2 | 0.000429 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 111 | 111 | AY.60 | 0.104128 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 107 | 107 | AY.43 | 0.000474 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 96 | 96 | AY.103 | 0.000596 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 95 | 95 | B.1.1.232 | 0.172414 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 91 | 91 | AY.92 | 0.026142 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 73 | 73 | B.1.2 | 0.000643 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 72 | 72 | B.1.429 | 0.001694 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 71 | 71 | AY.44 | 0.000432 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 54 | 64 | All | 0.00001 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 8 | 64 | All | 0.000002 |
ORF1ab/nsp3 | 1314 | S1314R | Agt | Cgt | 2 | 64 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 58 | 58 | B.1.471 | 0.15847 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 54 | 54 | AY.34 | 0.005236 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 52 | 52 | AY.33 | 0.003472 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 50 | 50 | B.1 | 0.000458 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 47 | 47 | AY.71 | 0.022328 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 42 | 42 | B.1.177.81 | 0.007952 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 41 | 41 | AY.25 | 0.000247 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 39 | 39 | AY.43 | 0.000173 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 35 | 35 | AY.84 | 0.015311 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 33 | 33 | B.1.1.214 | 0.00183 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 31 | 31 | B.1.177 | 0.000408 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 28 | 28 | AY.79 | 0.033898 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 27 | 27 | AY.65 | 0.014392 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 22 | 22 | AK.2 | 1 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 21 | 21 | AY.107 | 0.009786 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 21 | 21 | B.1.1.241 | 0.043478 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 17 | 17 | AY.117 | 0.001437 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 17 | 17 | C.36.3 | 0.009643 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 16 | 16 | B.1.258.17 | 0.001664 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 15 | 15 | AY.98 | 0.001185 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 14 | 14 | AY.77 | 0.015784 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 13 | 13 | AY.1 | 0.005144 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 12 | 12 | AY.91 | 0.008766 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 12 | 12 | B.1.160 | 0.000374 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 11 | 11 | AY.36 | 0.00163 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 11 | 11 | P.1.7 | 0.003512 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 9 | 9 | AY.105 | 0.005788 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 8 | 8 | B.1.177.44 | 0.004152 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 1314 | S1314del1 | AGT | -NN | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1314 | S1314del1 | agT | ag- | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1314 | S1314del1 | AGt | -Tt | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 7 | 7 | B.1.1.420 | 0.007042 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 6 | 6 | B.1.1.432 | 0.007595 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 6 | 6 | B.1.1.465 | 0.09375 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 5 | 5 | AY.46.1 | 0.005133 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | B.1.1.369 | 0.001785 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 4 | 4 | B.1.160.32 | 0.017167 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | B.1.210 | 0.008529 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1314 | S1314del1 | agT | ag- | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1314 | S1314del1 | AGT | -NN | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.1.388 | 0.136364 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 3 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 1314 | S1314I | aGT | aTA | 1 | 3 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1314 | S1314del2 | aGT | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314del2 | AGT | --N | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1314 | S1314del1 | AGT | -NN | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.83 | 0.003448 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.1.274 | 0.010101 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.160.11 | 0.011429 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.160.15 | 0.009901 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.160.20 | 0.017857 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.379 | 0.034483 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp3 | 1314 | S1314F | AGt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314E | AGT | GAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314L | AGt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314T | aGt | aCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314Y | AGt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1314 | S1314del1 | AGt | -Tt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1314 | S1314del1 | agT | ag- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1314 | S1314del2 | AGT | --N | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1314 | S1314E | AGT | GAG | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1314 | S1314del2 | aGT | a-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.1.445 | 0.037037 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1314 | S1314F | AGt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1314 | S1314C | Agt | Tgt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1314 | S1314R | Agt | Cgt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp3 | 1314 | S1314Y | AGt | TAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1314 | S1314R | Agt | Cgt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1314 | S1314G | AgT | GgA | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.534 | 0.0125 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.573 | 0.006098 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1314 | S1314R | agT | agA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1314 | S1314T | aGt | aCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1314 | S1314L | AGt | CTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp3 | 1314 | S1314N | aGt | aAt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1314 | S1314I | aGt | aTt | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1314 | S1314S | agT | agC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1314 | S1314G | Agt | Ggt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1314 | S1314del | AGT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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