CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1311

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31311A1311VA2129VnonsyngCtgTt334033390.9997016650-6652
ORF1ab/nsp31311A1311VA2129VnonsyngCTgTC334010.0002994016650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcC5483810.6952556650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcA5481580.2883216650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcG54890.01642346650-6652
ORF1ab/nsp31311A1311TA2129TnonsynGctAct23923916650-6652
ORF1ab/nsp31311A1311delA2129deldelGCT---22022016650-6652
ORF1ab/nsp31311A1311SA2129SnonsynGctTct808016650-6652
ORF1ab/nsp31311A1311DA2129DnonsyngCtgAt28270.9642866650-6652
ORF1ab/nsp31311A1311DA2129DnonsyngCTgAC2810.03571436650-6652
ORF1ab/nsp31311A1311FA2129FnonsynGCtTTt242416650-6652
ORF1ab/nsp31311A1311GA2129GnonsyngCtgGt141416650-6652
ORF1ab/nsp31311A1311PA2129PnonsynGctCct111116650-6652
ORF1ab/nsp31311A1311del1A2129del1delgcTgc-210.56650-6652
ORF1ab/nsp31311A1311del1A2129del1delgCtg-t210.56650-6652

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31311A1311VgCtgTt33393340All0.000639
ORF1ab/nsp31311A1311VgCTgTC13340All0
ORF1ab/nsp31311A1311VgCtgTt839839B.1.1.70.000751
ORF1ab/nsp31311A1311AgcTgcC381548All0.000073
ORF1ab/nsp31311A1311AgcTgcA158548All0.00003
ORF1ab/nsp31311A1311AgcTgcG9548All0.000002
ORF1ab/nsp31311A1311VgCtgTt259259AY.1030.001608
ORF1ab/nsp31311A1311VgCtgTt243243AY.40.000378
ORF1ab/nsp31311A1311TGctAct239239All0.000046
ORF1ab/nsp31311A1311delGCT---220220All0.000042
ORF1ab/nsp31311A1311AgcTgcC153153AY.40.000238
ORF1ab/nsp31311A1311VgCtgTt105105B.1.3380.905172
ORF1ab/nsp31311A1311VgCtgTt101101B.1.617.20.00038
ORF1ab/nsp31311A1311delGCT---9494B.1.1.70.000084
ORF1ab/nsp31311A1311VgCtgTt8585AY.430.000377
ORF1ab/nsp31311A1311VgCtgTt8181AY.50.001673
ORF1ab/nsp31311A1311SGctTct8080All0.000015
ORF1ab/nsp31311A1311VgCtgTt7575AY.250.000451
ORF1ab/nsp31311A1311VgCtgTt7272B.1.20.000634
ORF1ab/nsp31311A1311VgCtgTt7171B.1.2400.015305
ORF1ab/nsp31311A1311VgCtgTt6868AY.330.004541
ORF1ab/nsp31311A1311TGctAct6767B.1.1.70.00006
ORF1ab/nsp31311A1311VgCtgTt6464AY.440.00039
ORF1ab/nsp31311A1311VgCtgTt6161AH.30.231939
ORF1ab/nsp31311A1311VgCtgTt6060B.10.00055
ORF1ab/nsp31311A1311VgCtgTt5858B.1.6370.004238
ORF1ab/nsp31311A1311VgCtgTt5656AY.60.002303
ORF1ab/nsp31311A1311AgcTgcC3054B.1.1.70.000027
ORF1ab/nsp31311A1311AgcTgcA2254B.1.1.70.00002
ORF1ab/nsp31311A1311AgcTgcG254B.1.1.70.000002
ORF1ab/nsp31311A1311VgCtgTt5353B.1.1770.000698
ORF1ab/nsp31311A1311VgCtgTt4949B.1.10.000889
ORF1ab/nsp31311A1311VgCtgTt4747AY.120.10.015088
ORF1ab/nsp31311A1311VgCtgTt4141B.1.1.3180.012372
ORF1ab/nsp31311A1311AgcTgcA4041B.1.1770.000527
ORF1ab/nsp31311A1311AgcTgcC141B.1.1770.000013
ORF1ab/nsp31311A1311VgCtgTt3838B.1.1.5240.791667
ORF1ab/nsp31311A1311VgCtgTt3333AY.30.000328
ORF1ab/nsp31311A1311TGctAct3333B.1.438.10.00354
ORF1ab/nsp31311A1311VgCtgTt3131P.10.000488
ORF1ab/nsp31311A1311VgCtgTt3030AY.260.000849
ORF1ab/nsp31311A1311DgCtgAt2728All0.000005
ORF1ab/nsp31311A1311DgCTgAC128All0
ORF1ab/nsp31311A1311AgcTgcC2228B.1.617.20.000083
ORF1ab/nsp31311A1311AgcTgcA628B.1.617.20.000023
ORF1ab/nsp31311A1311VgCtgTt2626AY.4.20.000564
ORF1ab/nsp31311A1311VgCtgTt2626B.1.2430.001809
ORF1ab/nsp31311A1311VgCtgTt2525AY.98.10.001211
ORF1ab/nsp31311A1311VgCtgTt2525B.1.5260.000588
ORF1ab/nsp31311A1311FGCtTTt2424All0.000005
ORF1ab/nsp31311A1311AgcTgcC2424AY.340.002327
ORF1ab/nsp31311A1311FGCtTTt2424AY.440.000146
ORF1ab/nsp31311A1311VgCtgTt2323AY.390.000568
ORF1ab/nsp31311A1311VgCtgTt2222AY.1170.001859
ORF1ab/nsp31311A1311SGctTct2222B.1.1.70.00002
ORF1ab/nsp31311A1311TGctAct2121AY.390.000519
ORF1ab/nsp31311A1311VgCtgTt2121B.1.4290.000494
ORF1ab/nsp31311A1311delGCT---2020AY.430.000089
ORF1ab/nsp31311A1311AgcTgcC1919AY.1020.000504
ORF1ab/nsp31311A1311VgCtgTt1919AY.290.0003
ORF1ab/nsp31311A1311VgCtgTt1919R.10.00171
ORF1ab/nsp31311A1311TGctAct1818B.1.5610.007146
ORF1ab/nsp31311A1311VgCtgTt1717AY.230.001186
ORF1ab/nsp31311A1311VgCtgTt1717B.1.1600.00053
ORF1ab/nsp31311A1311AgcTgcC1717B.1.2210.001208
ORF1ab/nsp31311A1311VgCtgTt1717B.1.2210.001208
ORF1ab/nsp31311A1311TGctAct1616AY.40.000025
ORF1ab/nsp31311A1311TGctAct1616B.1.2400.003449
ORF1ab/nsp31311A1311VgCtgTt1515AY.1190.00053
ORF1ab/nsp31311A1311AgcTgcC1515AY.260.000425
ORF1ab/nsp31311A1311delGCT---1515B.1.1770.000198
ORF1ab/nsp31311A1311GgCtgGt1414All0.000003
ORF1ab/nsp31311A1311delGCT---1414B.1.617.20.000053
ORF1ab/nsp31311A1311AgcTgcA713AY.1030.000043
ORF1ab/nsp31311A1311AgcTgcC613AY.1030.000037
ORF1ab/nsp31311A1311AgcTgcA1013B.1.10.000181
ORF1ab/nsp31311A1311AgcTgcC313B.1.10.000054
ORF1ab/nsp31311A1311AgcTgcA1313B.1.177.750.013528
ORF1ab/nsp31311A1311VgCtgTt1212B.1.5960.001046
ORF1ab/nsp31311A1311PGctCct1111All0.000002
ORF1ab/nsp31311A1311delGCT---1111AY.40.000017
ORF1ab/nsp31311A1311TGctAct1111AY.440.000067
ORF1ab/nsp31311A1311VgCtgTt1111B.1.177.440.005708
ORF1ab/nsp31311A1311VgCtgTt1111B.1.2580.000732
ORF1ab/nsp31311A1311VgCtgTt1111B.1.5760.009973
ORF1ab/nsp31311A1311VgCtgTt1111P.1.140.000526
ORF1ab/nsp31311A1311VgCtgTt1111P.1.150.002556
ORF1ab/nsp31311A1311VgCtgTt1010AY.1180.000626
ORF1ab/nsp31311A1311DgCtgAt1010AY.290.000158
ORF1ab/nsp31311A1311SGctTct1010AY.40.000016
ORF1ab/nsp31311A1311AgcTgcC610B.10.000055
ORF1ab/nsp31311A1311AgcTgcA310B.10.000027
ORF1ab/nsp31311A1311AgcTgcG110B.10.000009
ORF1ab/nsp31311A1311AgcTgcA710B.1.20.000062
ORF1ab/nsp31311A1311AgcTgcG210B.1.20.000018
ORF1ab/nsp31311A1311AgcTgcC110B.1.20.000009
ORF1ab/nsp31311A1311TGctAct1010B.1.617.20.000038
ORF1ab/nsp31311A1311AgcTgcC710P.10.00011
ORF1ab/nsp31311A1311AgcTgcA310P.10.000047
ORF1ab/nsp31311A1311AgcTgcC79AY.390.000173
ORF1ab/nsp31311A1311AgcTgcA29AY.390.000049
ORF1ab/nsp31311A1311AgcTgcC89AY.440.000049
ORF1ab/nsp31311A1311AgcTgcA19AY.440.000006
ORF1ab/nsp31311A1311VgCtgTt99B.1.1.1890.013616
ORF1ab/nsp31311A1311GgCtgGt99B.1.1.3170.003705
ORF1ab/nsp31311A1311VgCtgTt88AY.1020.000212
ORF1ab/nsp31311A1311VgCtgTt88AY.39.10.000317
ORF1ab/nsp31311A1311SGctTct88AY.98.10.000387
ORF1ab/nsp31311A1311VgCtgTt88B.1.1.5190.000318
ORF1ab/nsp31311A1311VgCtgTt88Q.80.001319
ORF1ab/nsp31311A1311VgCtgTt77AY.110.009371
ORF1ab/nsp31311A1311TGctAct77B.1.10.000127
ORF1ab/nsp31311A1311AgcTgcA77B.1.1.3010.008255
ORF1ab/nsp31311A1311AgcTgcC77B.1.1.5190.000278
ORF1ab/nsp31311A1311AgcTgcA67B.1.2580.000399
ORF1ab/nsp31311A1311AgcTgcC17B.1.2580.000067
ORF1ab/nsp31311A1311VgCtgTt66AY.1200.000223
ORF1ab/nsp31311A1311VgCtgTt66AY.4.50.000645
ORF1ab/nsp31311A1311VgCtgTt66AY.75.10.001082
ORF1ab/nsp31311A1311VgCtgTt66B.1.177.810.001136
ORF1ab/nsp31311A1311VgCtgTt66B.1.3510.000178
ORF1ab/nsp31311A1311VgCtgTt66B.1.360.000875
ORF1ab/nsp31311A1311VgCtgTt66B.1.4000.002574
ORF1ab/nsp31311A1311VgCtgTt66B.1.438.10.000644
ORF1ab/nsp31311A1311AgcTgcC45AY.250.000024
ORF1ab/nsp31311A1311AgcTgcG15AY.250.000006
ORF1ab/nsp31311A1311delGCT---55AY.4.50.000537
ORF1ab/nsp31311A1311VgCtgTt55AY.450.000608
ORF1ab/nsp31311A1311AgcTgcA45AY.460.000416
ORF1ab/nsp31311A1311AgcTgcC15AY.460.000104
ORF1ab/nsp31311A1311VgCtgTt55AY.46.60.000361
ORF1ab/nsp31311A1311VgCtgTt55AY.7.20.002796
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3160.004625
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3170.002058
ORF1ab/nsp31311A1311TGctAct55B.1.20.000044
ORF1ab/nsp31311A1311AgcTgcA55B.1.258.140.004902
ORF1ab/nsp31311A1311VgCtgTt55B.1.4270.000252
ORF1ab/nsp31311A1311VgCtgTt55B.1.5270.018519
ORF1ab/nsp31311A1311VgCtgTt44AY.1000.000184
ORF1ab/nsp31311A1311VgCtgTt44AY.1010.001962
ORF1ab/nsp31311A1311AgcTgcC44AY.1210.000541
ORF1ab/nsp31311A1311VgCtgTt44AY.210.00759
ORF1ab/nsp31311A1311SGctTct44AY.30.00004
ORF1ab/nsp31311A1311DgCtgAt44AY.420.000161
ORF1ab/nsp31311A1311VgCtgTt44AY.420.000161
ORF1ab/nsp31311A1311VgCtgTt44AY.750.000224
ORF1ab/nsp31311A1311VgCtgTt44B0.000511
ORF1ab/nsp31311A1311delGCT---44B.10.000037
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.2140.000222
ORF1ab/nsp31311A1311TGctAct44B.1.1.2160.003562
ORF1ab/nsp31311A1311AgcTgcC44B.1.1.3160.0037
ORF1ab/nsp31311A1311SGctTct44B.1.1.370.000771
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.4860.006309
ORF1ab/nsp31311A1311AgcTgcA44B.1.177.530.009569
ORF1ab/nsp31311A1311SGctTct44B.1.20.000035
ORF1ab/nsp31311A1311VgCtgTt44B.1.2060.003263
ORF1ab/nsp31311A1311VgCtgTt44Q.30.00058
ORF1ab/nsp31311A1311VgCtgTt33A.50.005769
ORF1ab/nsp31311A1311VgCtgTt33AY.1130.000427
ORF1ab/nsp31311A1311SGctTct33AY.1180.000188
ORF1ab/nsp31311A1311TGctAct33AY.1200.000112
ORF1ab/nsp31311A1311VgCtgTt33AY.140.000264
ORF1ab/nsp31311A1311VgCtgTt33AY.3.10.000256
ORF1ab/nsp31311A1311VgCtgTt33AY.380.001498
ORF1ab/nsp31311A1311AgcTgcC33AY.430.000013
ORF1ab/nsp31311A1311VgCtgTt33AY.470.000093
ORF1ab/nsp31311A1311VgCtgTt33AY.650.001599
ORF1ab/nsp31311A1311VgCtgTt33AY.9.10.000251
ORF1ab/nsp31311A1311VgCtgTt33AY.9.20.00011
ORF1ab/nsp31311A1311VgCtgTt33AY.920.000862
ORF1ab/nsp31311A1311TGctAct33B.10.000027
ORF1ab/nsp31311A1311delGCT---33B.1.10.000054
ORF1ab/nsp31311A1311AgcTgcC33B.1.1.2140.000166
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.2310.009288
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.280.000934
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.3060.001315
ORF1ab/nsp31311A1311AgcTgcA23B.1.1600.000062
ORF1ab/nsp31311A1311AgcTgcC13B.1.1600.000031
ORF1ab/nsp31311A1311SGctTct33B.1.1770.00004
ORF1ab/nsp31311A1311VgCtgTt33B.1.2340.000396
ORF1ab/nsp31311A1311delGCT---33B.1.36.170.001482
ORF1ab/nsp31311A1311VgCtgTt33B.1.3610.003866
ORF1ab/nsp31311A1311VgCtgTt33B.1.4110.011111
ORF1ab/nsp31311A1311VgCtgTt33B.1.595.40.021898
ORF1ab/nsp31311A1311VgCtgTt33B.1.617.10.000387
ORF1ab/nsp31311A1311SGctTct33B.1.617.20.000011
ORF1ab/nsp31311A1311AgcTgcC33P.1.140.000143
ORF1ab/nsp31311A1311VgCtgTt33P.1.90.014423
ORF1ab/nsp31311A1311VgCtgTt120.055556
ORF1ab/nsp31311A1311VgCTgTC120.055556
ORF1ab/nsp31311A1311del1gcTgc-12All0
ORF1ab/nsp31311A1311del1gCtg-t12All0
ORF1ab/nsp31311A1311VgCtgTt22AY.10.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.1100.000225
ORF1ab/nsp31311A1311VgCtgTt22AY.1110.000366
ORF1ab/nsp31311A1311TGctAct22AY.1190.000071
ORF1ab/nsp31311A1311SGctTct22AY.1200.000074
ORF1ab/nsp31311A1311AgcTgcC22AY.1200.000074
ORF1ab/nsp31311A1311VgCtgTt22AY.160.000759
ORF1ab/nsp31311A1311SGctTct22AY.200.000078
ORF1ab/nsp31311A1311VgCtgTt22AY.200.000078
ORF1ab/nsp31311A1311delGCT---22AY.250.000012
ORF1ab/nsp31311A1311VgCtgTt22AY.270.000129
ORF1ab/nsp31311A1311AgcTgcC22AY.290.000032
ORF1ab/nsp31311A1311VgCtgTt22AY.300.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.340.000194
ORF1ab/nsp31311A1311VgCtgTt22AY.360.000296
ORF1ab/nsp31311A1311DgCtgAt22AY.40.000003
ORF1ab/nsp31311A1311GgCtgGt22AY.40.000003
ORF1ab/nsp31311A1311VgCtgTt22AY.460.000208
ORF1ab/nsp31311A1311VgCtgTt22AY.46.40.000329
ORF1ab/nsp31311A1311VgCtgTt22AY.46.50.000397
ORF1ab/nsp31311A1311delGCT---22AY.50.000041
ORF1ab/nsp31311A1311AgcTgcC22AY.5.40.000553
ORF1ab/nsp31311A1311AgcTgcC22AY.60.000082
ORF1ab/nsp31311A1311VgCtgTt22AY.610.00021
ORF1ab/nsp31311A1311VgCtgTt22AY.680.000547
ORF1ab/nsp31311A1311VgCtgTt22AY.740.000231
ORF1ab/nsp31311A1311TGctAct22AY.750.000112
ORF1ab/nsp31311A1311VgCtgTt22AY.850.000854
ORF1ab/nsp31311A1311VgCtgTt22AY.880.001768
ORF1ab/nsp31311A1311SGctTct22B.10.000018
ORF1ab/nsp31311A1311GgCtgGt22B.10.000018
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.250.001137
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.330.000842
ORF1ab/nsp31311A1311AgcTgcC22B.1.1.3480.001592
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.5280.009615
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.150.001262
ORF1ab/nsp31311A1311delGCT---22B.1.177.40.000422
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.710.020202
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.750.002081
ORF1ab/nsp31311A1311delGCT---22B.1.177.870.001456
ORF1ab/nsp31311A1311delGCT---22B.1.20.000018
ORF1ab/nsp31311A1311VgCtgTt22B.1.2650.002541
ORF1ab/nsp31311A1311AgcTgcC22B.1.3510.000059
ORF1ab/nsp31311A1311VgCtgTt22B.1.36.180.00084
ORF1ab/nsp31311A1311VgCtgTt22B.1.3670.001585
ORF1ab/nsp31311A1311VgCtgTt22B.1.3770.009132
ORF1ab/nsp31311A1311VgCtgTt22B.1.3970.009709
ORF1ab/nsp31311A1311VgCtgTt22B.1.4970.00063
ORF1ab/nsp31311A1311VgCtgTt22B.1.5170.000854
ORF1ab/nsp31311A1311VgCtgTt22B.1.5210.00995
ORF1ab/nsp31311A1311AgcTgcA22B.1.5250.000226
ORF1ab/nsp31311A1311VgCtgTt22B.1.910.004149
ORF1ab/nsp31311A1311VgCtgTt22C.370.000232
ORF1ab/nsp31311A1311VgCtgTt22D.20.00015
ORF1ab/nsp31311A1311AgcTgcC110.055556
ORF1ab/nsp31311A1311delGCT---11A0.000387
ORF1ab/nsp31311A1311DgCtgAt11A.20.000662
ORF1ab/nsp31311A1311GgCtgGt11A.2.40.003367
ORF1ab/nsp31311A1311AgcTgcC11AU.10.001266
ORF1ab/nsp31311A1311VgCtgTt11AW.10.003049
ORF1ab/nsp31311A1311TGctAct11AY.1030.000006
ORF1ab/nsp31311A1311VgCtgTt11AY.1060.000335
ORF1ab/nsp31311A1311VgCtgTt11AY.1140.000231
ORF1ab/nsp31311A1311delGCT---11AY.1160.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.1160.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.116.10.000311
ORF1ab/nsp31311A1311DgCtgAt11AY.1170.000085
ORF1ab/nsp31311A1311delGCT---11AY.1200.000037
ORF1ab/nsp31311A1311AgcTgcC11AY.16.10.00047
ORF1ab/nsp31311A1311delGCT---11AY.190.00114
ORF1ab/nsp31311A1311VgCtgTt11AY.20.000356
ORF1ab/nsp31311A1311TGctAct11AY.200.000039
ORF1ab/nsp31311A1311AgcTgcC11AY.230.00007
ORF1ab/nsp31311A1311DgCtgAt11AY.230.00007
ORF1ab/nsp31311A1311SGctTct11AY.250.000006
ORF1ab/nsp31311A1311PGctCct11AY.250.000006
ORF1ab/nsp31311A1311TGctAct11AY.250.000006
ORF1ab/nsp31311A1311TGctAct11AY.260.000028
ORF1ab/nsp31311A1311SGctTct11AY.290.000016
ORF1ab/nsp31311A1311VgCtgTt11AY.29.10.000221
ORF1ab/nsp31311A1311DgCtgAt11AY.30.00001
ORF1ab/nsp31311A1311AgcTgcG11AY.30.00001
ORF1ab/nsp31311A1311AgcTgcC11AY.330.000067
ORF1ab/nsp31311A1311TGctAct11AY.330.000067
ORF1ab/nsp31311A1311AgcTgcC11AY.34.10.00051
ORF1ab/nsp31311A1311VgCtgTt11AY.34.10.00051
ORF1ab/nsp31311A1311delGCT---11AY.360.000148
ORF1ab/nsp31311A1311DgCtgAt11AY.360.000148
ORF1ab/nsp31311A1311AgcTgcC11AY.4.20.000022
ORF1ab/nsp31311A1311SGctTct11AY.4.50.000107
ORF1ab/nsp31311A1311DgCtgAt11AY.400.000964
ORF1ab/nsp31311A1311DgCtgAt11AY.430.000004
ORF1ab/nsp31311A1311TGctAct11AY.430.000004
ORF1ab/nsp31311A1311SGctTct11AY.440.000006
ORF1ab/nsp31311A1311delGCT---11AY.440.000006
ORF1ab/nsp31311A1311DgCtgAt11AY.440.000006
ORF1ab/nsp31311A1311delGCT---11AY.460.000104
ORF1ab/nsp31311A1311AgcTgcC11AY.46.20.000635
ORF1ab/nsp31311A1311delGCT---11AY.46.20.000635
ORF1ab/nsp31311A1311delGCT---11AY.470.000031
ORF1ab/nsp31311A1311AgcTgcC11AY.5.30.000337
ORF1ab/nsp31311A1311VgCtgTt11AY.540.000095
ORF1ab/nsp31311A1311VgCtgTt11AY.580.000907
ORF1ab/nsp31311A1311TGctAct11AY.60.000041
ORF1ab/nsp31311A1311delGCT---11AY.60.000041
ORF1ab/nsp31311A1311delGCT---11AY.600.000938
ORF1ab/nsp31311A1311AgcTgcC11AY.670.000464
ORF1ab/nsp31311A1311VgCtgTt11AY.670.000464
ORF1ab/nsp31311A1311AgcTgcA11AY.690.000187
ORF1ab/nsp31311A1311delGCT---11AY.70.000196
ORF1ab/nsp31311A1311SGctTct11AY.7.20.000559
ORF1ab/nsp31311A1311delGCT---11AY.720.001361
ORF1ab/nsp31311A1311SGctTct11AY.75.10.00018
ORF1ab/nsp31311A1311DgCTgAC11AY.840.000437
ORF1ab/nsp31311A1311delGCT---11AY.90.000068
ORF1ab/nsp31311A1311VgCtgTt11AY.90.000068
ORF1ab/nsp31311A1311TGctAct11AY.9.10.000084
ORF1ab/nsp31311A1311AgcTgcG11AY.910.00073
ORF1ab/nsp31311A1311SGctTct11AY.920.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.930.000273
ORF1ab/nsp31311A1311VgCtgTt11AY.980.000079
ORF1ab/nsp31311A1311delGCT---11AY.990.001049
ORF1ab/nsp31311A1311VgCtgTt11AY.99.20.000092
ORF1ab/nsp31311A1311PGctCct11B.10.000009
ORF1ab/nsp31311A1311PGctCct11B.1.10.000018
ORF1ab/nsp31311A1311DgCtgAt11B.1.10.000018
ORF1ab/nsp31311A1311SGctTct11B.1.10.000018
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.1330.008475
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2070.001182
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2180.007692
ORF1ab/nsp31311A1311TGctAct11B.1.1.2220.000204
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2320.001815
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2740.005051
ORF1ab/nsp31311A1311PGctCct11B.1.1.280.000311
ORF1ab/nsp31311A1311TGctAct11B.1.1.2940.001266
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3010.001179
ORF1ab/nsp31311A1311delGCT---11B.1.1.3110.000358
ORF1ab/nsp31311A1311DgCtgAt11B.1.1.3110.000358
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp31311A1311delGCT---11B.1.1.3120.001912
ORF1ab/nsp31311A1311AgcTgcC11B.1.1.3170.000412
ORF1ab/nsp31311A1311delGCT---11B.1.1.3480.000796
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3530.020833
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31311A1311delGCT---11B.1.1.370.000193
ORF1ab/nsp31311A1311AgcTgcG11B.1.1.3720.000689
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3890.006061
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3930.111111
ORF1ab/nsp31311A1311delGCT---11B.1.1.4090.002833
ORF1ab/nsp31311A1311TGctAct11B.1.1.4340.000349
ORF1ab/nsp31311A1311AgcTgcC11B.1.1.500.000679
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.5070.008696
ORF1ab/nsp31311A1311PGctCct11B.1.1.5190.00004
ORF1ab/nsp31311A1311PGctCct11B.1.1.70.000001
ORF1ab/nsp31311A1311PGctCct11B.1.1.700.000341
ORF1ab/nsp31311A1311VgCtgTt11B.1.1110.001175
ORF1ab/nsp31311A1311TGctAct11B.1.1260.001276
ORF1ab/nsp31311A1311TGctAct11B.1.1600.000031
ORF1ab/nsp31311A1311delGCT---11B.1.1600.000031
ORF1ab/nsp31311A1311AgcTgcA11B.1.160.300.002976
ORF1ab/nsp31311A1311VgCtgTt11B.1.160.320.004292
ORF1ab/nsp31311A1311PGctCct11B.1.1770.000013
ORF1ab/nsp31311A1311TGctAct11B.1.1770.000013
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.100.000878
ORF1ab/nsp31311A1311delGCT---11B.1.177.110.001698
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.120.000152
ORF1ab/nsp31311A1311SGctTct11B.1.177.150.000631
ORF1ab/nsp31311A1311delGCT---11B.1.177.150.000631
ORF1ab/nsp31311A1311del1gcTgc-11B.1.177.160.000664
ORF1ab/nsp31311A1311delGCT---11B.1.177.170.000821
ORF1ab/nsp31311A1311PGctCct11B.1.177.210.000076
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.350.000691
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.40.000211
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.440.000519
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.550.002331
ORF1ab/nsp31311A1311delGCT---11B.1.177.560.000668
ORF1ab/nsp31311A1311AgcTgcC11B.1.177.570.000281
ORF1ab/nsp31311A1311delGCT---11B.1.177.580.001332
ORF1ab/nsp31311A1311delGCT---11B.1.177.60.000977
ORF1ab/nsp31311A1311delGCT---11B.1.177.690.001484
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31311A1311delGCT---11B.1.177.70.000165
ORF1ab/nsp31311A1311AgcTgcC11B.1.177.70.000165
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.830.001481
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.850.005435
ORF1ab/nsp31311A1311PGctCct11B.1.20.000009
ORF1ab/nsp31311A1311del1gCtg-t11B.1.20.000009
ORF1ab/nsp31311A1311delGCT---11B.1.2100.002132
ORF1ab/nsp31311A1311TGctAct11B.1.2100.002132
ORF1ab/nsp31311A1311VgCtgTt11B.1.2360.002053
ORF1ab/nsp31311A1311delGCT---11B.1.258.100.011364
ORF1ab/nsp31311A1311AgcTgcA11B.1.258.170.000104
ORF1ab/nsp31311A1311VgCtgTt11B.1.258.170.000104
ORF1ab/nsp31311A1311VgCtgTt11B.1.2640.012346
ORF1ab/nsp31311A1311VgCtgTt11B.1.2790.000514
ORF1ab/nsp31311A1311VgCtgTt11B.1.3050.002151
ORF1ab/nsp31311A1311VgCtgTt11B.1.3110.000275
ORF1ab/nsp31311A1311VgCtgTt11B.1.3130.006579
ORF1ab/nsp31311A1311TGctAct11B.1.3510.00003
ORF1ab/nsp31311A1311delGCT---11B.1.360.000146
ORF1ab/nsp31311A1311TGctAct11B.1.36.290.000517
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.290.000517
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.380.001642
ORF1ab/nsp31311A1311TGctAct11B.1.36.80.001
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.80.001
ORF1ab/nsp31311A1311VgCtgTt11B.1.3630.012987
ORF1ab/nsp31311A1311VgCtgTt11B.1.3750.00082
ORF1ab/nsp31311A1311SGctTct11B.1.3960.000706
ORF1ab/nsp31311A1311VgCtgTt11B.1.3960.000706
ORF1ab/nsp31311A1311delGCT---11B.1.3990.001934
ORF1ab/nsp31311A1311VgCtgTt11B.1.4080.00369
ORF1ab/nsp31311A1311delGCT---11B.1.4090.000781
ORF1ab/nsp31311A1311AgcTgcA11B.1.4160.001269
ORF1ab/nsp31311A1311VgCtgTt11B.1.4200.010417
ORF1ab/nsp31311A1311VgCtgTt11B.1.4480.002625
ORF1ab/nsp31311A1311DgCtgAt11B.1.4560.003268
ORF1ab/nsp31311A1311VgCtgTt11B.1.4590.004082
ORF1ab/nsp31311A1311VgCtgTt11B.1.4650.003802
ORF1ab/nsp31311A1311VgCtgTt11B.1.4700.001404
ORF1ab/nsp31311A1311VgCtgTt11B.1.5250.000113
ORF1ab/nsp31311A1311AgcTgcC11B.1.5260.000024
ORF1ab/nsp31311A1311VgCtgTt11B.1.5460.003704
ORF1ab/nsp31311A1311VgCtgTt11B.1.5600.00463
ORF1ab/nsp31311A1311AgcTgcC11B.1.5600.00463
ORF1ab/nsp31311A1311VgCtgTt11B.1.5750.000303
ORF1ab/nsp31311A1311VgCtgTt11B.1.5770.000687
ORF1ab/nsp31311A1311VgCtgTt11B.1.5880.00091
ORF1ab/nsp31311A1311AgcTgcA11B.1.5960.000087
ORF1ab/nsp31311A1311VgCtgTt11B.1.6050.005952
ORF1ab/nsp31311A1311VgCtgTt11B.1.6190.000871
ORF1ab/nsp31311A1311VgCtgTt11B.1.6210.000089
ORF1ab/nsp31311A1311AgcTgcC11B.1.6210.000089
ORF1ab/nsp31311A1311delGCT---11B.1.6210.000089
ORF1ab/nsp31311A1311AgcTgcA11B.1.621.10.000506
ORF1ab/nsp31311A1311delGCT---11B.1.6300.005236
ORF1ab/nsp31311A1311PGctCct11B.1.6370.000073
ORF1ab/nsp31311A1311AgcTgcA11B.400.000364
ORF1ab/nsp31311A1311AgcTgcA11B.610.005747
ORF1ab/nsp31311A1311AgcTgcA11C.180.002591
ORF1ab/nsp31311A1311AgcTgcA11C.350.000774
ORF1ab/nsp31311A1311TGctAct11C.370.000116
ORF1ab/nsp31311A1311SGctTct11D.20.000075
ORF1ab/nsp31311A1311VgCtgTt11N.50.001767
ORF1ab/nsp31311A1311delGCT---11P.10.000016
ORF1ab/nsp31311A1311VgCtgTt11P.1.120.000484
ORF1ab/nsp31311A1311AgcTgcC11P.1.130.000898
ORF1ab/nsp31311A1311delGCT---11P.1.150.000232
ORF1ab/nsp31311A1311VgCtgTt11P.1.40.000977
ORF1ab/nsp31311A1311VgCtgTt11P.1.70.000319
ORF1ab/nsp31311A1311AgcTgcC11P.20.000187
ORF1ab/nsp31311A1311VgCtgTt11P.20.000187
ORF1ab/nsp31311A1311VgCtgTt11P.30.001595
ORF1ab/nsp31311A1311VgCtgTt11P.70.004367
ORF1ab/nsp31311A1311VgCtgTt11Q.10.000126
ORF1ab/nsp31311A1311SGctTct11Q.10.000126
ORF1ab/nsp31311A1311delGCT---11Q.10.000126
ORF1ab/nsp31311A1311VgCtgTt11Q.20.000613
ORF1ab/nsp31311A1311TGctAct11Q.40.000455
ORF1ab/nsp31311A1311SGctTct11Q.80.000165
ORF1ab/nsp31311A1311TGctAct11Q.80.000165
ORF1ab/nsp31311A1311delGCT---11R.10.00009
ORF1ab/nsp31311A1311delGCT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.