CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1311

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31311A1311VA2129VnonsyngCtgTt334033390.9997016650-6652
ORF1ab/nsp31311A1311VA2129VnonsyngCTgTC334010.0002994016650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcC5483810.6952556650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcA5481580.2883216650-6652
ORF1ab/nsp31311A1311AA2129AsyngcTgcG54890.01642346650-6652
ORF1ab/nsp31311A1311TA2129TnonsynGctAct23923916650-6652
ORF1ab/nsp31311A1311delA2129deldelGCT---22022016650-6652
ORF1ab/nsp31311A1311SA2129SnonsynGctTct808016650-6652
ORF1ab/nsp31311A1311DA2129DnonsyngCtgAt28270.9642866650-6652
ORF1ab/nsp31311A1311DA2129DnonsyngCTgAC2810.03571436650-6652
ORF1ab/nsp31311A1311FA2129FnonsynGCtTTt242416650-6652
ORF1ab/nsp31311A1311GA2129GnonsyngCtgGt141416650-6652
ORF1ab/nsp31311A1311PA2129PnonsynGctCct111116650-6652
ORF1ab/nsp31311A1311del1A2129del1delgcTgc-210.56650-6652
ORF1ab/nsp31311A1311del1A2129del1delgCtg-t210.56650-6652

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31311A1311VgCtgTt33393340All0.000639
ORF1ab/nsp31311A1311VgCTgTC13340All0
ORF1ab/nsp31311A1311VgCtgTt839839B.1.1.70.000751
ORF1ab/nsp31311A1311AgcTgcC381548All0.000073
ORF1ab/nsp31311A1311AgcTgcA158548All0.00003
ORF1ab/nsp31311A1311AgcTgcG9548All0.000002
ORF1ab/nsp31311A1311VgCtgTt259259AY.1030.001608
ORF1ab/nsp31311A1311VgCtgTt243243AY.40.000378
ORF1ab/nsp31311A1311TGctAct239239All0.000046
ORF1ab/nsp31311A1311delGCT---220220All0.000042
ORF1ab/nsp31311A1311AgcTgcC153153AY.40.000238
ORF1ab/nsp31311A1311VgCtgTt105105B.1.3380.905172
ORF1ab/nsp31311A1311VgCtgTt101101B.1.617.20.00038
ORF1ab/nsp31311A1311delGCT---9494B.1.1.70.000084
ORF1ab/nsp31311A1311VgCtgTt8585AY.430.000377
ORF1ab/nsp31311A1311VgCtgTt8181AY.50.001673
ORF1ab/nsp31311A1311SGctTct8080All0.000015
ORF1ab/nsp31311A1311VgCtgTt7575AY.250.000451
ORF1ab/nsp31311A1311VgCtgTt7272B.1.20.000634
ORF1ab/nsp31311A1311VgCtgTt7171B.1.2400.015305
ORF1ab/nsp31311A1311VgCtgTt6868AY.330.004541
ORF1ab/nsp31311A1311TGctAct6767B.1.1.70.00006
ORF1ab/nsp31311A1311VgCtgTt6464AY.440.00039
ORF1ab/nsp31311A1311VgCtgTt6161AH.30.231939
ORF1ab/nsp31311A1311VgCtgTt6060B.10.00055
ORF1ab/nsp31311A1311VgCtgTt5858B.1.6370.004238
ORF1ab/nsp31311A1311VgCtgTt5656AY.60.002303
ORF1ab/nsp31311A1311AgcTgcC3054B.1.1.70.000027
ORF1ab/nsp31311A1311AgcTgcA2254B.1.1.70.00002
ORF1ab/nsp31311A1311AgcTgcG254B.1.1.70.000002
ORF1ab/nsp31311A1311VgCtgTt5353B.1.1770.000698
ORF1ab/nsp31311A1311VgCtgTt4949B.1.10.000889
ORF1ab/nsp31311A1311VgCtgTt4747AY.120.10.015088
ORF1ab/nsp31311A1311VgCtgTt4141B.1.1.3180.012372
ORF1ab/nsp31311A1311AgcTgcA4041B.1.1770.000527
ORF1ab/nsp31311A1311AgcTgcC141B.1.1770.000013
ORF1ab/nsp31311A1311VgCtgTt3838B.1.1.5240.791667
ORF1ab/nsp31311A1311VgCtgTt3333AY.30.000328
ORF1ab/nsp31311A1311TGctAct3333B.1.438.10.00354
ORF1ab/nsp31311A1311VgCtgTt3131P.10.000488
ORF1ab/nsp31311A1311VgCtgTt3030AY.260.000849
ORF1ab/nsp31311A1311DgCtgAt2728All0.000005
ORF1ab/nsp31311A1311DgCTgAC128All0
ORF1ab/nsp31311A1311AgcTgcC2228B.1.617.20.000083
ORF1ab/nsp31311A1311AgcTgcA628B.1.617.20.000023
ORF1ab/nsp31311A1311VgCtgTt2626AY.4.20.000564
ORF1ab/nsp31311A1311VgCtgTt2626B.1.2430.001809
ORF1ab/nsp31311A1311VgCtgTt2525AY.98.10.001211
ORF1ab/nsp31311A1311VgCtgTt2525B.1.5260.000588
ORF1ab/nsp31311A1311FGCtTTt2424All0.000005
ORF1ab/nsp31311A1311AgcTgcC2424AY.340.002327
ORF1ab/nsp31311A1311FGCtTTt2424AY.440.000146
ORF1ab/nsp31311A1311VgCtgTt2323AY.390.000568
ORF1ab/nsp31311A1311VgCtgTt2222AY.1170.001859
ORF1ab/nsp31311A1311SGctTct2222B.1.1.70.00002
ORF1ab/nsp31311A1311TGctAct2121AY.390.000519
ORF1ab/nsp31311A1311VgCtgTt2121B.1.4290.000494
ORF1ab/nsp31311A1311delGCT---2020AY.430.000089
ORF1ab/nsp31311A1311AgcTgcC1919AY.1020.000504
ORF1ab/nsp31311A1311VgCtgTt1919AY.290.0003
ORF1ab/nsp31311A1311VgCtgTt1919R.10.00171
ORF1ab/nsp31311A1311TGctAct1818B.1.5610.007146
ORF1ab/nsp31311A1311VgCtgTt1717AY.230.001186
ORF1ab/nsp31311A1311VgCtgTt1717B.1.1600.00053
ORF1ab/nsp31311A1311AgcTgcC1717B.1.2210.001208
ORF1ab/nsp31311A1311VgCtgTt1717B.1.2210.001208
ORF1ab/nsp31311A1311TGctAct1616AY.40.000025
ORF1ab/nsp31311A1311TGctAct1616B.1.2400.003449
ORF1ab/nsp31311A1311VgCtgTt1515AY.1190.00053
ORF1ab/nsp31311A1311AgcTgcC1515AY.260.000425
ORF1ab/nsp31311A1311delGCT---1515B.1.1770.000198
ORF1ab/nsp31311A1311GgCtgGt1414All0.000003
ORF1ab/nsp31311A1311delGCT---1414B.1.617.20.000053
ORF1ab/nsp31311A1311AgcTgcA713AY.1030.000043
ORF1ab/nsp31311A1311AgcTgcC613AY.1030.000037
ORF1ab/nsp31311A1311AgcTgcA1013B.1.10.000181
ORF1ab/nsp31311A1311AgcTgcC313B.1.10.000054
ORF1ab/nsp31311A1311AgcTgcA1313B.1.177.750.013528
ORF1ab/nsp31311A1311VgCtgTt1212B.1.5960.001046
ORF1ab/nsp31311A1311PGctCct1111All0.000002
ORF1ab/nsp31311A1311delGCT---1111AY.40.000017
ORF1ab/nsp31311A1311TGctAct1111AY.440.000067
ORF1ab/nsp31311A1311VgCtgTt1111B.1.177.440.005708
ORF1ab/nsp31311A1311VgCtgTt1111B.1.2580.000732
ORF1ab/nsp31311A1311VgCtgTt1111B.1.5760.009973
ORF1ab/nsp31311A1311VgCtgTt1111P.1.140.000526
ORF1ab/nsp31311A1311VgCtgTt1111P.1.150.002556
ORF1ab/nsp31311A1311VgCtgTt1010AY.1180.000626
ORF1ab/nsp31311A1311DgCtgAt1010AY.290.000158
ORF1ab/nsp31311A1311SGctTct1010AY.40.000016
ORF1ab/nsp31311A1311AgcTgcC610B.10.000055
ORF1ab/nsp31311A1311AgcTgcA310B.10.000027
ORF1ab/nsp31311A1311AgcTgcG110B.10.000009
ORF1ab/nsp31311A1311AgcTgcA710B.1.20.000062
ORF1ab/nsp31311A1311AgcTgcG210B.1.20.000018
ORF1ab/nsp31311A1311AgcTgcC110B.1.20.000009
ORF1ab/nsp31311A1311TGctAct1010B.1.617.20.000038
ORF1ab/nsp31311A1311AgcTgcC710P.10.00011
ORF1ab/nsp31311A1311AgcTgcA310P.10.000047
ORF1ab/nsp31311A1311AgcTgcC79AY.390.000173
ORF1ab/nsp31311A1311AgcTgcA29AY.390.000049
ORF1ab/nsp31311A1311AgcTgcC89AY.440.000049
ORF1ab/nsp31311A1311AgcTgcA19AY.440.000006
ORF1ab/nsp31311A1311VgCtgTt99B.1.1.1890.013616
ORF1ab/nsp31311A1311GgCtgGt99B.1.1.3170.003705
ORF1ab/nsp31311A1311VgCtgTt88AY.1020.000212
ORF1ab/nsp31311A1311VgCtgTt88AY.39.10.000317
ORF1ab/nsp31311A1311SGctTct88AY.98.10.000387
ORF1ab/nsp31311A1311VgCtgTt88B.1.1.5190.000318
ORF1ab/nsp31311A1311VgCtgTt88Q.80.001319
ORF1ab/nsp31311A1311VgCtgTt77AY.110.009371
ORF1ab/nsp31311A1311TGctAct77B.1.10.000127
ORF1ab/nsp31311A1311AgcTgcA77B.1.1.3010.008255
ORF1ab/nsp31311A1311AgcTgcC77B.1.1.5190.000278
ORF1ab/nsp31311A1311AgcTgcA67B.1.2580.000399
ORF1ab/nsp31311A1311AgcTgcC17B.1.2580.000067
ORF1ab/nsp31311A1311VgCtgTt66AY.1200.000223
ORF1ab/nsp31311A1311VgCtgTt66AY.4.50.000645
ORF1ab/nsp31311A1311VgCtgTt66AY.75.10.001082
ORF1ab/nsp31311A1311VgCtgTt66B.1.177.810.001136
ORF1ab/nsp31311A1311VgCtgTt66B.1.3510.000178
ORF1ab/nsp31311A1311VgCtgTt66B.1.360.000875
ORF1ab/nsp31311A1311VgCtgTt66B.1.4000.002574
ORF1ab/nsp31311A1311VgCtgTt66B.1.438.10.000644
ORF1ab/nsp31311A1311AgcTgcC45AY.250.000024
ORF1ab/nsp31311A1311AgcTgcG15AY.250.000006
ORF1ab/nsp31311A1311delGCT---55AY.4.50.000537
ORF1ab/nsp31311A1311VgCtgTt55AY.450.000608
ORF1ab/nsp31311A1311AgcTgcA45AY.460.000416
ORF1ab/nsp31311A1311AgcTgcC15AY.460.000104
ORF1ab/nsp31311A1311VgCtgTt55AY.46.60.000361
ORF1ab/nsp31311A1311VgCtgTt55AY.7.20.002796
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3160.004625
ORF1ab/nsp31311A1311VgCtgTt55B.1.1.3170.002058
ORF1ab/nsp31311A1311TGctAct55B.1.20.000044
ORF1ab/nsp31311A1311AgcTgcA55B.1.258.140.004902
ORF1ab/nsp31311A1311VgCtgTt55B.1.4270.000252
ORF1ab/nsp31311A1311VgCtgTt55B.1.5270.018519
ORF1ab/nsp31311A1311VgCtgTt44AY.1000.000184
ORF1ab/nsp31311A1311VgCtgTt44AY.1010.001962
ORF1ab/nsp31311A1311AgcTgcC44AY.1210.000541
ORF1ab/nsp31311A1311VgCtgTt44AY.210.00759
ORF1ab/nsp31311A1311SGctTct44AY.30.00004
ORF1ab/nsp31311A1311DgCtgAt44AY.420.000161
ORF1ab/nsp31311A1311VgCtgTt44AY.420.000161
ORF1ab/nsp31311A1311VgCtgTt44AY.750.000224
ORF1ab/nsp31311A1311VgCtgTt44B0.000511
ORF1ab/nsp31311A1311delGCT---44B.10.000037
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.2140.000222
ORF1ab/nsp31311A1311TGctAct44B.1.1.2160.003562
ORF1ab/nsp31311A1311AgcTgcC44B.1.1.3160.0037
ORF1ab/nsp31311A1311SGctTct44B.1.1.370.000771
ORF1ab/nsp31311A1311VgCtgTt44B.1.1.4860.006309
ORF1ab/nsp31311A1311AgcTgcA44B.1.177.530.009569
ORF1ab/nsp31311A1311SGctTct44B.1.20.000035
ORF1ab/nsp31311A1311VgCtgTt44B.1.2060.003263
ORF1ab/nsp31311A1311VgCtgTt44Q.30.00058
ORF1ab/nsp31311A1311VgCtgTt33A.50.005769
ORF1ab/nsp31311A1311VgCtgTt33AY.1130.000427
ORF1ab/nsp31311A1311SGctTct33AY.1180.000188
ORF1ab/nsp31311A1311TGctAct33AY.1200.000112
ORF1ab/nsp31311A1311VgCtgTt33AY.140.000264
ORF1ab/nsp31311A1311VgCtgTt33AY.3.10.000256
ORF1ab/nsp31311A1311VgCtgTt33AY.380.001498
ORF1ab/nsp31311A1311AgcTgcC33AY.430.000013
ORF1ab/nsp31311A1311VgCtgTt33AY.470.000093
ORF1ab/nsp31311A1311VgCtgTt33AY.650.001599
ORF1ab/nsp31311A1311VgCtgTt33AY.9.10.000251
ORF1ab/nsp31311A1311VgCtgTt33AY.9.20.00011
ORF1ab/nsp31311A1311VgCtgTt33AY.920.000862
ORF1ab/nsp31311A1311TGctAct33B.10.000027
ORF1ab/nsp31311A1311delGCT---33B.1.10.000054
ORF1ab/nsp31311A1311AgcTgcC33B.1.1.2140.000166
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.2310.009288
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.280.000934
ORF1ab/nsp31311A1311VgCtgTt33B.1.1.3060.001315
ORF1ab/nsp31311A1311AgcTgcA23B.1.1600.000062
ORF1ab/nsp31311A1311AgcTgcC13B.1.1600.000031
ORF1ab/nsp31311A1311SGctTct33B.1.1770.00004
ORF1ab/nsp31311A1311VgCtgTt33B.1.2340.000396
ORF1ab/nsp31311A1311delGCT---33B.1.36.170.001482
ORF1ab/nsp31311A1311VgCtgTt33B.1.3610.003866
ORF1ab/nsp31311A1311VgCtgTt33B.1.4110.011111
ORF1ab/nsp31311A1311VgCtgTt33B.1.595.40.021898
ORF1ab/nsp31311A1311VgCtgTt33B.1.617.10.000387
ORF1ab/nsp31311A1311SGctTct33B.1.617.20.000011
ORF1ab/nsp31311A1311AgcTgcC33P.1.140.000143
ORF1ab/nsp31311A1311VgCtgTt33P.1.90.014423
ORF1ab/nsp31311A1311VgCtgTt120.055556
ORF1ab/nsp31311A1311VgCTgTC120.055556
ORF1ab/nsp31311A1311del1gcTgc-12All0
ORF1ab/nsp31311A1311del1gCtg-t12All0
ORF1ab/nsp31311A1311VgCtgTt22AY.10.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.1100.000225
ORF1ab/nsp31311A1311VgCtgTt22AY.1110.000366
ORF1ab/nsp31311A1311TGctAct22AY.1190.000071
ORF1ab/nsp31311A1311SGctTct22AY.1200.000074
ORF1ab/nsp31311A1311AgcTgcC22AY.1200.000074
ORF1ab/nsp31311A1311VgCtgTt22AY.160.000759
ORF1ab/nsp31311A1311SGctTct22AY.200.000078
ORF1ab/nsp31311A1311VgCtgTt22AY.200.000078
ORF1ab/nsp31311A1311delGCT---22AY.250.000012
ORF1ab/nsp31311A1311VgCtgTt22AY.270.000129
ORF1ab/nsp31311A1311AgcTgcC22AY.290.000032
ORF1ab/nsp31311A1311VgCtgTt22AY.300.000791
ORF1ab/nsp31311A1311VgCtgTt22AY.340.000194
ORF1ab/nsp31311A1311VgCtgTt22AY.360.000296
ORF1ab/nsp31311A1311DgCtgAt22AY.40.000003
ORF1ab/nsp31311A1311GgCtgGt22AY.40.000003
ORF1ab/nsp31311A1311VgCtgTt22AY.460.000208
ORF1ab/nsp31311A1311VgCtgTt22AY.46.40.000329
ORF1ab/nsp31311A1311VgCtgTt22AY.46.50.000397
ORF1ab/nsp31311A1311delGCT---22AY.50.000041
ORF1ab/nsp31311A1311AgcTgcC22AY.5.40.000553
ORF1ab/nsp31311A1311AgcTgcC22AY.60.000082
ORF1ab/nsp31311A1311VgCtgTt22AY.610.00021
ORF1ab/nsp31311A1311VgCtgTt22AY.680.000547
ORF1ab/nsp31311A1311VgCtgTt22AY.740.000231
ORF1ab/nsp31311A1311TGctAct22AY.750.000112
ORF1ab/nsp31311A1311VgCtgTt22AY.850.000854
ORF1ab/nsp31311A1311VgCtgTt22AY.880.001768
ORF1ab/nsp31311A1311SGctTct22B.10.000018
ORF1ab/nsp31311A1311GgCtgGt22B.10.000018
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.250.001137
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.330.000842
ORF1ab/nsp31311A1311AgcTgcC22B.1.1.3480.001592
ORF1ab/nsp31311A1311VgCtgTt22B.1.1.5280.009615
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.150.001262
ORF1ab/nsp31311A1311delGCT---22B.1.177.40.000422
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.710.020202
ORF1ab/nsp31311A1311VgCtgTt22B.1.177.750.002081
ORF1ab/nsp31311A1311delGCT---22B.1.177.870.001456
ORF1ab/nsp31311A1311delGCT---22B.1.20.000018
ORF1ab/nsp31311A1311VgCtgTt22B.1.2650.002541
ORF1ab/nsp31311A1311AgcTgcC22B.1.3510.000059
ORF1ab/nsp31311A1311VgCtgTt22B.1.36.180.00084
ORF1ab/nsp31311A1311VgCtgTt22B.1.3670.001585
ORF1ab/nsp31311A1311VgCtgTt22B.1.3770.009132
ORF1ab/nsp31311A1311VgCtgTt22B.1.3970.009709
ORF1ab/nsp31311A1311VgCtgTt22B.1.4970.00063
ORF1ab/nsp31311A1311VgCtgTt22B.1.5170.000854
ORF1ab/nsp31311A1311VgCtgTt22B.1.5210.00995
ORF1ab/nsp31311A1311AgcTgcA22B.1.5250.000226
ORF1ab/nsp31311A1311VgCtgTt22B.1.910.004149
ORF1ab/nsp31311A1311VgCtgTt22C.370.000232
ORF1ab/nsp31311A1311VgCtgTt22D.20.00015
ORF1ab/nsp31311A1311AgcTgcC110.055556
ORF1ab/nsp31311A1311delGCT---11A0.000387
ORF1ab/nsp31311A1311DgCtgAt11A.20.000662
ORF1ab/nsp31311A1311GgCtgGt11A.2.40.003367
ORF1ab/nsp31311A1311AgcTgcC11AU.10.001266
ORF1ab/nsp31311A1311VgCtgTt11AW.10.003049
ORF1ab/nsp31311A1311TGctAct11AY.1030.000006
ORF1ab/nsp31311A1311VgCtgTt11AY.1060.000335
ORF1ab/nsp31311A1311VgCtgTt11AY.1140.000231
ORF1ab/nsp31311A1311delGCT---11AY.1160.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.1160.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.116.10.000311
ORF1ab/nsp31311A1311DgCtgAt11AY.1170.000085
ORF1ab/nsp31311A1311delGCT---11AY.1200.000037
ORF1ab/nsp31311A1311AgcTgcC11AY.16.10.00047
ORF1ab/nsp31311A1311delGCT---11AY.190.00114
ORF1ab/nsp31311A1311VgCtgTt11AY.20.000356
ORF1ab/nsp31311A1311TGctAct11AY.200.000039
ORF1ab/nsp31311A1311AgcTgcC11AY.230.00007
ORF1ab/nsp31311A1311DgCtgAt11AY.230.00007
ORF1ab/nsp31311A1311SGctTct11AY.250.000006
ORF1ab/nsp31311A1311PGctCct11AY.250.000006
ORF1ab/nsp31311A1311TGctAct11AY.250.000006
ORF1ab/nsp31311A1311TGctAct11AY.260.000028
ORF1ab/nsp31311A1311SGctTct11AY.290.000016
ORF1ab/nsp31311A1311VgCtgTt11AY.29.10.000221
ORF1ab/nsp31311A1311DgCtgAt11AY.30.00001
ORF1ab/nsp31311A1311AgcTgcG11AY.30.00001
ORF1ab/nsp31311A1311AgcTgcC11AY.330.000067
ORF1ab/nsp31311A1311TGctAct11AY.330.000067
ORF1ab/nsp31311A1311AgcTgcC11AY.34.10.00051
ORF1ab/nsp31311A1311VgCtgTt11AY.34.10.00051
ORF1ab/nsp31311A1311delGCT---11AY.360.000148
ORF1ab/nsp31311A1311DgCtgAt11AY.360.000148
ORF1ab/nsp31311A1311AgcTgcC11AY.4.20.000022
ORF1ab/nsp31311A1311SGctTct11AY.4.50.000107
ORF1ab/nsp31311A1311DgCtgAt11AY.400.000964
ORF1ab/nsp31311A1311DgCtgAt11AY.430.000004
ORF1ab/nsp31311A1311TGctAct11AY.430.000004
ORF1ab/nsp31311A1311SGctTct11AY.440.000006
ORF1ab/nsp31311A1311delGCT---11AY.440.000006
ORF1ab/nsp31311A1311DgCtgAt11AY.440.000006
ORF1ab/nsp31311A1311delGCT---11AY.460.000104
ORF1ab/nsp31311A1311AgcTgcC11AY.46.20.000635
ORF1ab/nsp31311A1311delGCT---11AY.46.20.000635
ORF1ab/nsp31311A1311delGCT---11AY.470.000031
ORF1ab/nsp31311A1311AgcTgcC11AY.5.30.000337
ORF1ab/nsp31311A1311VgCtgTt11AY.540.000095
ORF1ab/nsp31311A1311VgCtgTt11AY.580.000907
ORF1ab/nsp31311A1311TGctAct11AY.60.000041
ORF1ab/nsp31311A1311delGCT---11AY.60.000041
ORF1ab/nsp31311A1311delGCT---11AY.600.000938
ORF1ab/nsp31311A1311AgcTgcC11AY.670.000464
ORF1ab/nsp31311A1311VgCtgTt11AY.670.000464
ORF1ab/nsp31311A1311AgcTgcA11AY.690.000187
ORF1ab/nsp31311A1311delGCT---11AY.70.000196
ORF1ab/nsp31311A1311SGctTct11AY.7.20.000559
ORF1ab/nsp31311A1311delGCT---11AY.720.001361
ORF1ab/nsp31311A1311SGctTct11AY.75.10.00018
ORF1ab/nsp31311A1311DgCTgAC11AY.840.000437
ORF1ab/nsp31311A1311delGCT---11AY.90.000068
ORF1ab/nsp31311A1311VgCtgTt11AY.90.000068
ORF1ab/nsp31311A1311TGctAct11AY.9.10.000084
ORF1ab/nsp31311A1311AgcTgcG11AY.910.00073
ORF1ab/nsp31311A1311SGctTct11AY.920.000287
ORF1ab/nsp31311A1311VgCtgTt11AY.930.000273
ORF1ab/nsp31311A1311VgCtgTt11AY.980.000079
ORF1ab/nsp31311A1311delGCT---11AY.990.001049
ORF1ab/nsp31311A1311VgCtgTt11AY.99.20.000092
ORF1ab/nsp31311A1311PGctCct11B.10.000009
ORF1ab/nsp31311A1311PGctCct11B.1.10.000018
ORF1ab/nsp31311A1311DgCtgAt11B.1.10.000018
ORF1ab/nsp31311A1311SGctTct11B.1.10.000018
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.1330.008475
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2070.001182
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2180.007692
ORF1ab/nsp31311A1311TGctAct11B.1.1.2220.000204
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2320.001815
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.2740.005051
ORF1ab/nsp31311A1311PGctCct11B.1.1.280.000311
ORF1ab/nsp31311A1311TGctAct11B.1.1.2940.001266
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3010.001179
ORF1ab/nsp31311A1311delGCT---11B.1.1.3110.000358
ORF1ab/nsp31311A1311DgCtgAt11B.1.1.3110.000358
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp31311A1311delGCT---11B.1.1.3120.001912
ORF1ab/nsp31311A1311AgcTgcC11B.1.1.3170.000412
ORF1ab/nsp31311A1311delGCT---11B.1.1.3480.000796
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3530.020833
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31311A1311delGCT---11B.1.1.370.000193
ORF1ab/nsp31311A1311AgcTgcG11B.1.1.3720.000689
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3890.006061
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.3930.111111
ORF1ab/nsp31311A1311delGCT---11B.1.1.4090.002833
ORF1ab/nsp31311A1311TGctAct11B.1.1.4340.000349
ORF1ab/nsp31311A1311AgcTgcC11B.1.1.500.000679
ORF1ab/nsp31311A1311VgCtgTt11B.1.1.5070.008696
ORF1ab/nsp31311A1311PGctCct11B.1.1.5190.00004
ORF1ab/nsp31311A1311PGctCct11B.1.1.70.000001
ORF1ab/nsp31311A1311PGctCct11B.1.1.700.000341
ORF1ab/nsp31311A1311VgCtgTt11B.1.1110.001175
ORF1ab/nsp31311A1311TGctAct11B.1.1260.001276
ORF1ab/nsp31311A1311TGctAct11B.1.1600.000031
ORF1ab/nsp31311A1311delGCT---11B.1.1600.000031
ORF1ab/nsp31311A1311AgcTgcA11B.1.160.300.002976
ORF1ab/nsp31311A1311VgCtgTt11B.1.160.320.004292
ORF1ab/nsp31311A1311PGctCct11B.1.1770.000013
ORF1ab/nsp31311A1311TGctAct11B.1.1770.000013
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.100.000878
ORF1ab/nsp31311A1311delGCT---11B.1.177.110.001698
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.120.000152
ORF1ab/nsp31311A1311SGctTct11B.1.177.150.000631
ORF1ab/nsp31311A1311delGCT---11B.1.177.150.000631
ORF1ab/nsp31311A1311del1gcTgc-11B.1.177.160.000664
ORF1ab/nsp31311A1311delGCT---11B.1.177.170.000821
ORF1ab/nsp31311A1311PGctCct11B.1.177.210.000076
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.350.000691
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.40.000211
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.440.000519
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.550.002331
ORF1ab/nsp31311A1311delGCT---11B.1.177.560.000668
ORF1ab/nsp31311A1311AgcTgcC11B.1.177.570.000281
ORF1ab/nsp31311A1311delGCT---11B.1.177.580.001332
ORF1ab/nsp31311A1311delGCT---11B.1.177.60.000977
ORF1ab/nsp31311A1311delGCT---11B.1.177.690.001484
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31311A1311delGCT---11B.1.177.70.000165
ORF1ab/nsp31311A1311AgcTgcC11B.1.177.70.000165
ORF1ab/nsp31311A1311AgcTgcA11B.1.177.830.001481
ORF1ab/nsp31311A1311VgCtgTt11B.1.177.850.005435
ORF1ab/nsp31311A1311PGctCct11B.1.20.000009
ORF1ab/nsp31311A1311del1gCtg-t11B.1.20.000009
ORF1ab/nsp31311A1311delGCT---11B.1.2100.002132
ORF1ab/nsp31311A1311TGctAct11B.1.2100.002132
ORF1ab/nsp31311A1311VgCtgTt11B.1.2360.002053
ORF1ab/nsp31311A1311delGCT---11B.1.258.100.011364
ORF1ab/nsp31311A1311AgcTgcA11B.1.258.170.000104
ORF1ab/nsp31311A1311VgCtgTt11B.1.258.170.000104
ORF1ab/nsp31311A1311VgCtgTt11B.1.2640.012346
ORF1ab/nsp31311A1311VgCtgTt11B.1.2790.000514
ORF1ab/nsp31311A1311VgCtgTt11B.1.3050.002151
ORF1ab/nsp31311A1311VgCtgTt11B.1.3110.000275
ORF1ab/nsp31311A1311VgCtgTt11B.1.3130.006579
ORF1ab/nsp31311A1311TGctAct11B.1.3510.00003
ORF1ab/nsp31311A1311delGCT---11B.1.360.000146
ORF1ab/nsp31311A1311TGctAct11B.1.36.290.000517
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.290.000517
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.380.001642
ORF1ab/nsp31311A1311TGctAct11B.1.36.80.001
ORF1ab/nsp31311A1311VgCtgTt11B.1.36.80.001
ORF1ab/nsp31311A1311VgCtgTt11B.1.3630.012987
ORF1ab/nsp31311A1311VgCtgTt11B.1.3750.00082
ORF1ab/nsp31311A1311SGctTct11B.1.3960.000706
ORF1ab/nsp31311A1311VgCtgTt11B.1.3960.000706
ORF1ab/nsp31311A1311delGCT---11B.1.3990.001934
ORF1ab/nsp31311A1311VgCtgTt11B.1.4080.00369
ORF1ab/nsp31311A1311delGCT---11B.1.4090.000781
ORF1ab/nsp31311A1311AgcTgcA11B.1.4160.001269
ORF1ab/nsp31311A1311VgCtgTt11B.1.4200.010417
ORF1ab/nsp31311A1311VgCtgTt11B.1.4480.002625
ORF1ab/nsp31311A1311DgCtgAt11B.1.4560.003268
ORF1ab/nsp31311A1311VgCtgTt11B.1.4590.004082
ORF1ab/nsp31311A1311VgCtgTt11B.1.4650.003802
ORF1ab/nsp31311A1311VgCtgTt11B.1.4700.001404
ORF1ab/nsp31311A1311VgCtgTt11B.1.5250.000113
ORF1ab/nsp31311A1311AgcTgcC11B.1.5260.000024
ORF1ab/nsp31311A1311VgCtgTt11B.1.5460.003704
ORF1ab/nsp31311A1311VgCtgTt11B.1.5600.00463
ORF1ab/nsp31311A1311AgcTgcC11B.1.5600.00463
ORF1ab/nsp31311A1311VgCtgTt11B.1.5750.000303
ORF1ab/nsp31311A1311VgCtgTt11B.1.5770.000687
ORF1ab/nsp31311A1311VgCtgTt11B.1.5880.00091
ORF1ab/nsp31311A1311AgcTgcA11B.1.5960.000087
ORF1ab/nsp31311A1311VgCtgTt11B.1.6050.005952
ORF1ab/nsp31311A1311VgCtgTt11B.1.6190.000871
ORF1ab/nsp31311A1311VgCtgTt11B.1.6210.000089
ORF1ab/nsp31311A1311AgcTgcC11B.1.6210.000089
ORF1ab/nsp31311A1311delGCT---11B.1.6210.000089
ORF1ab/nsp31311A1311AgcTgcA11B.1.621.10.000506
ORF1ab/nsp31311A1311delGCT---11B.1.6300.005236
ORF1ab/nsp31311A1311PGctCct11B.1.6370.000073
ORF1ab/nsp31311A1311AgcTgcA11B.400.000364
ORF1ab/nsp31311A1311AgcTgcA11B.610.005747
ORF1ab/nsp31311A1311AgcTgcA11C.180.002591
ORF1ab/nsp31311A1311AgcTgcA11C.350.000774
ORF1ab/nsp31311A1311TGctAct11C.370.000116
ORF1ab/nsp31311A1311SGctTct11D.20.000075
ORF1ab/nsp31311A1311VgCtgTt11N.50.001767
ORF1ab/nsp31311A1311delGCT---11P.10.000016
ORF1ab/nsp31311A1311VgCtgTt11P.1.120.000484
ORF1ab/nsp31311A1311AgcTgcC11P.1.130.000898
ORF1ab/nsp31311A1311delGCT---11P.1.150.000232
ORF1ab/nsp31311A1311VgCtgTt11P.1.40.000977
ORF1ab/nsp31311A1311VgCtgTt11P.1.70.000319
ORF1ab/nsp31311A1311AgcTgcC11P.20.000187
ORF1ab/nsp31311A1311VgCtgTt11P.20.000187
ORF1ab/nsp31311A1311VgCtgTt11P.30.001595
ORF1ab/nsp31311A1311VgCtgTt11P.70.004367
ORF1ab/nsp31311A1311VgCtgTt11Q.10.000126
ORF1ab/nsp31311A1311SGctTct11Q.10.000126
ORF1ab/nsp31311A1311delGCT---11Q.10.000126
ORF1ab/nsp31311A1311VgCtgTt11Q.20.000613
ORF1ab/nsp31311A1311TGctAct11Q.40.000455
ORF1ab/nsp31311A1311SGctTct11Q.80.000165
ORF1ab/nsp31311A1311TGctAct11Q.80.000165
ORF1ab/nsp31311A1311delGCT---11R.10.00009
ORF1ab/nsp31311A1311delGCT---11U.30.003861