CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1307

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31307H1307YH2125YnonsynCatTat73871737940.9989586638-6640
ORF1ab/nsp31307H1307YH2125YnonsynCaTTaC73871770.001042366638-6640
ORF1ab/nsp31307H1307QH2125QnonsyncaTcaA4423640.8235296638-6640
ORF1ab/nsp31307H1307QH2125QnonsyncaTcaG442780.1764716638-6640
ORF1ab/nsp31307H1307HH2125HsyncaTcaC33633616638-6640
ORF1ab/nsp31307H1307delH2125deldelCAT---21821816638-6640
ORF1ab/nsp31307H1307RH2125RnonsyncAtcGt19319316638-6640
ORF1ab/nsp31307H1307NH2125NnonsynCatAat83820.9879526638-6640
ORF1ab/nsp31307H1307NH2125NnonsynCaTAaC8310.01204826638-6640
ORF1ab/nsp31307H1307DH2125DnonsynCatGat57550.9649126638-6640
ORF1ab/nsp31307H1307DH2125DnonsynCaTGaC5720.03508776638-6640
ORF1ab/nsp31307H1307LH2125LnonsyncAtcTt29270.9310356638-6640
ORF1ab/nsp31307H1307LH2125LnonsyncATcTA2910.03448286638-6640
ORF1ab/nsp31307H1307LH2125LnonsyncATcTC2910.03448286638-6640
ORF1ab/nsp31307H1307PH2125PnonsyncAtcCt1090.96638-6640
ORF1ab/nsp31307H1307PH2125PnonsyncATcCG1010.16638-6640
ORF1ab/nsp31307H1307del1H2125del1delCat-at6616638-6640
ORF1ab/nsp31307H1307FH2125FnonsynCAtTTt210.56638-6640
ORF1ab/nsp31307H1307FH2125FnonsynCATTTC210.56638-6640
ORF1ab/nsp31307H1307TH2125TnonsynCAtACt1116638-6640
ORF1ab/nsp31307H1307XH2125XnonsynCaTTaG1116638-6640
ORF1ab/nsp31307H1307del2H2125del2delCAt--t1116638-6640
ORF1ab/nsp31307H1307CH2125CnonsynCAtTGt1116638-6640

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31307H1307YCatTat7379473871All0.014114
ORF1ab/nsp31307H1307YCaTTaC7773871All0.000015
ORF1ab/nsp31307H1307YCatTat6619966275AY.440.402937
ORF1ab/nsp31307H1307YCaTTaC7666275AY.440.000463
ORF1ab/nsp31307H1307YCatTat26862686B.1.617.20.010114
ORF1ab/nsp31307H1307YCatTat10841084B.1.1.70.00097
ORF1ab/nsp31307H1307YCatTat539539AY.40.000839
ORF1ab/nsp31307H1307QcaTcaA364442All0.00007
ORF1ab/nsp31307H1307QcaTcaG78442All0.000015
ORF1ab/nsp31307H1307YCatTat363363AY.250.002183
ORF1ab/nsp31307H1307HcaTcaC336336All0.000064
ORF1ab/nsp31307H1307YCatTat329329B.1.1770.004332
ORF1ab/nsp31307H1307YCatTat242242AY.430.001072
ORF1ab/nsp31307H1307delCAT---218218All0.000042
ORF1ab/nsp31307H1307YCatTat212212AY.290.003344
ORF1ab/nsp31307H1307RcAtcGt193193All0.000037
ORF1ab/nsp31307H1307QcaTcaA171171B.1.5670.57
ORF1ab/nsp31307H1307HcaTcaC127127B.1.1.250.0722
ORF1ab/nsp31307H1307YCatTat121121AY.1030.000751
ORF1ab/nsp31307H1307YCatTat114114B.1.1.3510.318436
ORF1ab/nsp31307H1307YCatTat113113AY.70.022148
ORF1ab/nsp31307H1307YCatTat109109B.1.6370.007965
ORF1ab/nsp31307H1307YCatTat9797AD.20.021239
ORF1ab/nsp31307H1307HcaTcaC9595B.1.1.70.000085
ORF1ab/nsp31307H1307YCatTat9090B.1.20.000792
ORF1ab/nsp31307H1307delCAT---8989B.1.1.70.00008
ORF1ab/nsp31307H1307YCatTat8888P.1.140.004207
ORF1ab/nsp31307H1307NCatAat8283All0.000016
ORF1ab/nsp31307H1307NCaTAaC183All0
ORF1ab/nsp31307H1307YCatTat7676B.10.000696
ORF1ab/nsp31307H1307QcaTcaA6273B.1.1.70.000056
ORF1ab/nsp31307H1307QcaTcaG1173B.1.1.70.00001
ORF1ab/nsp31307H1307QcaTcaG3561AY.40.000054
ORF1ab/nsp31307H1307QcaTcaA2661AY.40.00004
ORF1ab/nsp31307H1307YCatTat5858AY.1170.004902
ORF1ab/nsp31307H1307DCatGat5557All0.000011
ORF1ab/nsp31307H1307DCaTGaC257All0
ORF1ab/nsp31307H1307YCatTat5353AY.30.000527
ORF1ab/nsp31307H1307YCatTat5252AY.390.001285
ORF1ab/nsp31307H1307RcAtcGt5050AY.1170.004226
ORF1ab/nsp31307H1307YCatTat4747AY.7.10.005297
ORF1ab/nsp31307H1307YCatTat4343B.1.1.5190.001708
ORF1ab/nsp31307H1307YCatTat4343P.10.000677
ORF1ab/nsp31307H1307YCatTat4141B.1.10.000744
ORF1ab/nsp31307H1307YCatTat3535AY.1190.001236
ORF1ab/nsp31307H1307YCatTat3030AY.450.003651
ORF1ab/nsp31307H1307LcAtcTt2729All0.000005
ORF1ab/nsp31307H1307LcATcTC129All0
ORF1ab/nsp31307H1307LcATcTA129All0
ORF1ab/nsp31307H1307RcAtcGt2929B.1.1.70.000026
ORF1ab/nsp31307H1307NCatAat2929B.1.4290.000682
ORF1ab/nsp31307H1307RcAtcGt2828AY.430.000124
ORF1ab/nsp31307H1307YCatTat2828P.1.150.006506
ORF1ab/nsp31307H1307YCatTat2525AY.470.000778
ORF1ab/nsp31307H1307YCatTat2424AY.1020.000636
ORF1ab/nsp31307H1307NCatAat2424B.1.1.70.000021
ORF1ab/nsp31307H1307YCatTat2222AY.50.000454
ORF1ab/nsp31307H1307YCatTat2121B.1.2340.002771
ORF1ab/nsp31307H1307YCatTat2121B.1.4270.00106
ORF1ab/nsp31307H1307QcaTcaA2020AY.250.00012
ORF1ab/nsp31307H1307delCAT---2020AY.430.000089
ORF1ab/nsp31307H1307YCatTat2020B.1.2370.099502
ORF1ab/nsp31307H1307YCatTat1919AY.260.000538
ORF1ab/nsp31307H1307YCatTat1919AY.340.001842
ORF1ab/nsp31307H1307DCatGat1919AY.40.00003
ORF1ab/nsp31307H1307QcaTcaA1919AY.4.50.002042
ORF1ab/nsp31307H1307YCatTat1919B.1.6210.001682
ORF1ab/nsp31307H1307YCatTat1818B.1.4290.000424
ORF1ab/nsp31307H1307QcaTcaG1717AY.810.033865
ORF1ab/nsp31307H1307YCatTat1717B.1.177.600.003713
ORF1ab/nsp31307H1307YCatTat1717C.260.125
ORF1ab/nsp31307H1307delCAT---1616B.1.617.20.00006
ORF1ab/nsp31307H1307QcaTcaA1515B.1.10.000272
ORF1ab/nsp31307H1307YCatTat1414AY.60.000576
ORF1ab/nsp31307H1307YCatTat1414AY.980.001106
ORF1ab/nsp31307H1307HcaTcaC1414B.1.2130.208955
ORF1ab/nsp31307H1307YCatTat1414B.1.2580.000932
ORF1ab/nsp31307H1307HcaTcaC1414B.1.617.20.000053
ORF1ab/nsp31307H1307YCatTat1313B.1.5260.000306
ORF1ab/nsp31307H1307YCatTat1212AY.1000.000552
ORF1ab/nsp31307H1307YCatTat1212AY.1200.000446
ORF1ab/nsp31307H1307YCatTat1212AY.460.001249
ORF1ab/nsp31307H1307delCAT---1212B.1.1770.000158
ORF1ab/nsp31307H1307delCAT---1111AY.40.000017
ORF1ab/nsp31307H1307HcaTcaC1111B.1.177.860.002018
ORF1ab/nsp31307H1307NCatAat1111B.1.3881
ORF1ab/nsp31307H1307PcAtcCt910All0.000002
ORF1ab/nsp31307H1307PcATcCG110All0
ORF1ab/nsp31307H1307YCatTat1010AY.230.000697
ORF1ab/nsp31307H1307YCatTat1010AY.270.000647
ORF1ab/nsp31307H1307YCatTat1010AY.4.20.000217
ORF1ab/nsp31307H1307YCatTat1010AY.420.000402
ORF1ab/nsp31307H1307YCatTat1010AY.750.00056
ORF1ab/nsp31307H1307RcAtcGt1010B.10.000092
ORF1ab/nsp31307H1307YCatTat1010B.1.177.80.007524
ORF1ab/nsp31307H1307YCatTat1010B.1.3690.002852
ORF1ab/nsp31307H1307YCatTat1010B.1.5750.003034
ORF1ab/nsp31307H1307DCatGat1010B.1.617.20.000038
ORF1ab/nsp31307H1307YCatTat99AY.540.000858
ORF1ab/nsp31307H1307YCatTat99B.1.1.2160.008014
ORF1ab/nsp31307H1307YCatTat99B.1.2430.000626
ORF1ab/nsp31307H1307YCatTat99C.370.001045
ORF1ab/nsp31307H1307RcAtcGt88AY.1030.00005
ORF1ab/nsp31307H1307QcaTcaG88AY.1180.000501
ORF1ab/nsp31307H1307YCatTat88AY.99.20.000737
ORF1ab/nsp31307H1307YCatTat88B0.001022
ORF1ab/nsp31307H1307YCatTat88B.1.466.20.00313
ORF1ab/nsp31307H1307YCatTat88B.1.617.10.001032
ORF1ab/nsp31307H1307YCatTat77AY.1180.000439
ORF1ab/nsp31307H1307YCatTat77AY.120.10.002247
ORF1ab/nsp31307H1307YCatTat77AY.46.40.001152
ORF1ab/nsp31307H1307RcAtcGt77AY.830.012069
ORF1ab/nsp31307H1307YCatTat77AY.98.10.000339
ORF1ab/nsp31307H1307YCatTat77B.1.1.280.002179
ORF1ab/nsp31307H1307YCatTat77B.1.1600.000218
ORF1ab/nsp31307H1307RcAtcGt77B.1.20.000062
ORF1ab/nsp31307H1307YCatTat77B.1.3510.000208
ORF1ab/nsp31307H1307YCatTat77P.1.70.002235
ORF1ab/nsp31307H1307del1Cat-at66All0.000001
ORF1ab/nsp31307H1307HcaTcaC66AY.1030.000037
ORF1ab/nsp31307H1307HcaTcaC66AY.30.00006
ORF1ab/nsp31307H1307YCatTat66AY.39.10.000238
ORF1ab/nsp31307H1307delCAT---66AY.4.50.000645
ORF1ab/nsp31307H1307YCatTat66AY.46.60.000433
ORF1ab/nsp31307H1307YCatTat66AY.9.20.00022
ORF1ab/nsp31307H1307HcaTcaC66B.10.000055
ORF1ab/nsp31307H1307RcAtcGt66B.1.10.000109
ORF1ab/nsp31307H1307YCatTat66B.1.258.170.000624
ORF1ab/nsp31307H1307QcaTcaA66B.1.5950.001566
ORF1ab/nsp31307H1307YCatTat66B.1.5950.001566
ORF1ab/nsp31307H1307YCatTat66P.1.10.001906
ORF1ab/nsp31307H1307YCatTat66Q.40.002729
ORF1ab/nsp31307H1307HcaTcaC55AY.1000.00023
ORF1ab/nsp31307H1307YCatTat55AY.1130.000712
ORF1ab/nsp31307H1307YCatTat55AY.1160.001434
ORF1ab/nsp31307H1307YCatTat55AY.200.000194
ORF1ab/nsp31307H1307HcaTcaC55AY.250.00003
ORF1ab/nsp31307H1307HcaTcaC55AY.290.000079
ORF1ab/nsp31307H1307YCatTat55AY.330.000334
ORF1ab/nsp31307H1307DCatGat55AY.390.000124
ORF1ab/nsp31307H1307RcAtcGt55AY.40.000008
ORF1ab/nsp31307H1307LcAtcTt55AY.40.000008
ORF1ab/nsp31307H1307HcaTcaC55AY.440.00003
ORF1ab/nsp31307H1307YCatTat55AY.790.006053
ORF1ab/nsp31307H1307HcaTcaC55AY.870.004163
ORF1ab/nsp31307H1307QcaTcaA55AY.90.000338
ORF1ab/nsp31307H1307delCAT---55B.10.000046
ORF1ab/nsp31307H1307QcaTcaA55B.10.000046
ORF1ab/nsp31307H1307DCatGat55B.1.1.70.000004
ORF1ab/nsp31307H1307YCatTat55P.1.100.001347
ORF1ab/nsp31307H1307YCatTat55P.1.170.000809
ORF1ab/nsp31307H1307YCatTat44AY.1010.001962
ORF1ab/nsp31307H1307PcAtcCt44AY.1030.000025
ORF1ab/nsp31307H1307YCatTat44AY.1140.000924
ORF1ab/nsp31307H1307YCatTat44AY.130.000644
ORF1ab/nsp31307H1307YCatTat44AY.34.10.00204
ORF1ab/nsp31307H1307HcaTcaC44AY.40.000006
ORF1ab/nsp31307H1307HcaTcaC44AY.430.000018
ORF1ab/nsp31307H1307DCatGat44AY.46.50.000794
ORF1ab/nsp31307H1307YCatTat44AY.710.0019
ORF1ab/nsp31307H1307YCatTat44AY.90.00027
ORF1ab/nsp31307H1307delCAT---44B.1.10.000073
ORF1ab/nsp31307H1307YCatTat44B.1.1.2550.012121
ORF1ab/nsp31307H1307YCatTat44B.1.177.860.000734
ORF1ab/nsp31307H1307YCatTat44B.1.360.000584
ORF1ab/nsp31307H1307RcAtcGt44B.1.4290.000094
ORF1ab/nsp31307H1307YCatTat44B.1.4590.016327
ORF1ab/nsp31307H1307YCatTat44C.36.30.002269
ORF1ab/nsp31307H1307YCatTat44Q.30.00058
ORF1ab/nsp31307H1307YCatTat44Q.80.00066
ORF1ab/nsp31307H1307YCatTat33A0.001161
ORF1ab/nsp31307H1307DCatGat33AY.1020.00008
ORF1ab/nsp31307H1307YCatTat33AY.1100.000338
ORF1ab/nsp31307H1307YCatTat33AY.1210.000406
ORF1ab/nsp31307H1307YCatTat33AY.140.000264
ORF1ab/nsp31307H1307RcAtcGt33AY.250.000018
ORF1ab/nsp31307H1307YCatTat33AY.29.10.000662
ORF1ab/nsp31307H1307RcAtcGt33AY.30.00003
ORF1ab/nsp31307H1307YCatTat33AY.3.10.000256
ORF1ab/nsp31307H1307YCatTat33AY.46.20.001906
ORF1ab/nsp31307H1307YCatTat33AY.620.001307
ORF1ab/nsp31307H1307YCatTat33AY.740.000347
ORF1ab/nsp31307H1307QcaTcaA33AY.80.001818
ORF1ab/nsp31307H1307RcAtcGt33AY.9.10.000251
ORF1ab/nsp31307H1307YCatTat33AY.920.000862
ORF1ab/nsp31307H1307LcAtcTt23B.1.10.000036
ORF1ab/nsp31307H1307LcATcTA13B.1.10.000018
ORF1ab/nsp31307H1307YCatTat33B.1.1.1700.003741
ORF1ab/nsp31307H1307YCatTat33B.1.1.3060.001315
ORF1ab/nsp31307H1307YCatTat33B.1.1.3970.006757
ORF1ab/nsp31307H1307YCatTat33B.1.177.810.000568
ORF1ab/nsp31307H1307delCAT---33B.1.177.870.002183
ORF1ab/nsp31307H1307NCatAat33B.1.20.000026
ORF1ab/nsp31307H1307YCatTat33B.1.2210.000213
ORF1ab/nsp31307H1307YCatTat33B.1.3110.000824
ORF1ab/nsp31307H1307YCatTat33B.1.3490.002144
ORF1ab/nsp31307H1307YCatTat33B.1.4000.001287
ORF1ab/nsp31307H1307YCatTat33B.1.5250.000339
ORF1ab/nsp31307H1307QcaTcaA33B.1.5960.000261
ORF1ab/nsp31307H1307YCatTat33B.1.5960.000261
ORF1ab/nsp31307H1307QcaTcaA23B.1.617.20.000008
ORF1ab/nsp31307H1307QcaTcaG13B.1.617.20.000004
ORF1ab/nsp31307H1307YCatTat33C.350.002322
ORF1ab/nsp31307H1307YCatTat33C.360.002732
ORF1ab/nsp31307H1307RcAtcGt33Q.10.000379
ORF1ab/nsp31307H1307LcAtcTt120.055556
ORF1ab/nsp31307H1307LcATcTC120.055556
ORF1ab/nsp31307H1307FCAtTTt120.055556
ORF1ab/nsp31307H1307FCATTTC120.055556
ORF1ab/nsp31307H1307YCaTTaC120.055556
ORF1ab/nsp31307H1307YCatTat120.055556
ORF1ab/nsp31307H1307YCatTat22A.270.003311
ORF1ab/nsp31307H1307FCATTTC12All0
ORF1ab/nsp31307H1307FCAtTTt12All0
ORF1ab/nsp31307H1307RcAtcGt22AP.10.003003
ORF1ab/nsp31307H1307YCatTat22AP.10.003003
ORF1ab/nsp31307H1307YCatTat22AY.100.00106
ORF1ab/nsp31307H1307YCatTat22AY.1060.00067
ORF1ab/nsp31307H1307YCatTat22AY.1070.000932
ORF1ab/nsp31307H1307QcaTcaA22AY.120.10.000642
ORF1ab/nsp31307H1307DCatGat22AY.1210.000271
ORF1ab/nsp31307H1307YCatTat22AY.160.000759
ORF1ab/nsp31307H1307QcaTcaA22AY.200.000078
ORF1ab/nsp31307H1307delCAT---22AY.250.000012
ORF1ab/nsp31307H1307RcAtcGt22AY.260.000057
ORF1ab/nsp31307H1307QcaTcaA22AY.30.00002
ORF1ab/nsp31307H1307YCatTat22AY.320.001065
ORF1ab/nsp31307H1307YCatTat22AY.350.000466
ORF1ab/nsp31307H1307YCatTat22AY.370.000632
ORF1ab/nsp31307H1307NCatAat22AY.40.000003
ORF1ab/nsp31307H1307YCatTat22AY.4.50.000215
ORF1ab/nsp31307H1307QcaTcaA22AY.430.000009
ORF1ab/nsp31307H1307RcAtcGt22AY.460.000208
ORF1ab/nsp31307H1307delCAT---22AY.50.000041
ORF1ab/nsp31307H1307RcAtcGt22AY.50.000041
ORF1ab/nsp31307H1307YCatTat22AY.550.001835
ORF1ab/nsp31307H1307YCatTat22AY.670.000929
ORF1ab/nsp31307H1307YCatTat22AY.690.000373
ORF1ab/nsp31307H1307YCatTat22AY.730.001331
ORF1ab/nsp31307H1307YCatTat22AY.760.009662
ORF1ab/nsp31307H1307YCatTat22AY.800.002257
ORF1ab/nsp31307H1307YCatTat22AY.840.000875
ORF1ab/nsp31307H1307RcAtcGt22AY.9.20.000073
ORF1ab/nsp31307H1307YCatTat22AY.950.001522
ORF1ab/nsp31307H1307LcAtcTt22B.10.000018
ORF1ab/nsp31307H1307NCatAat22B.10.000018
ORF1ab/nsp31307H1307YCatTat22B.1.1.10.000653
ORF1ab/nsp31307H1307YCatTat22B.1.1.2070.002364
ORF1ab/nsp31307H1307YCatTat22B.1.1.2140.000111
ORF1ab/nsp31307H1307HcaTcaC22B.1.1.2220.000408
ORF1ab/nsp31307H1307QcaTcaG22B.1.1.2840.000215
ORF1ab/nsp31307H1307YCatTat22B.1.1.3010.002358
ORF1ab/nsp31307H1307YCatTat22B.1.1.3050.007722
ORF1ab/nsp31307H1307YCatTat22B.1.1.390.001019
ORF1ab/nsp31307H1307YCatTat22B.1.1.4090.005666
ORF1ab/nsp31307H1307YCatTat22B.1.1.4340.000697
ORF1ab/nsp31307H1307LcAtcTt22B.1.1.70.000002
ORF1ab/nsp31307H1307del1Cat-at22B.1.1.70.000002
ORF1ab/nsp31307H1307YCatTat22B.1.1.700.000682
ORF1ab/nsp31307H1307RcAtcGt22B.1.1040.00738
ORF1ab/nsp31307H1307QcaTcaA22B.1.1600.000062
ORF1ab/nsp31307H1307YCatTat22B.1.177.320.002699
ORF1ab/nsp31307H1307delCAT---22B.1.177.40.000422
ORF1ab/nsp31307H1307YCatTat22B.1.177.470.025974
ORF1ab/nsp31307H1307YCatTat22B.1.177.50.002484
ORF1ab/nsp31307H1307YCatTat22B.1.177.520.003515
ORF1ab/nsp31307H1307YCatTat22B.1.3240.00321
ORF1ab/nsp31307H1307delCAT---22B.1.36.170.000988
ORF1ab/nsp31307H1307QcaTcaA22B.1.36.170.000988
ORF1ab/nsp31307H1307LcAtcTt22B.1.438.10.000215
ORF1ab/nsp31307H1307YCatTat22B.1.4990.002101
ORF1ab/nsp31307H1307YCatTat22B.1.5580.009132
ORF1ab/nsp31307H1307YCatTat22B.1.5640.000852
ORF1ab/nsp31307H1307HcaTcaC22B.1.5960.000174
ORF1ab/nsp31307H1307YCatTat22B.1.6090.000959
ORF1ab/nsp31307H1307YCatTat22P.20.000373
ORF1ab/nsp31307H1307YCatTat22R.10.00018
ORF1ab/nsp31307H1307HcaTcaC110.055556
ORF1ab/nsp31307H1307delCAT---11A0.000387
ORF1ab/nsp31307H1307RcAtcGt11A.10.000282
ORF1ab/nsp31307H1307YCatTat11A.10.000282
ORF1ab/nsp31307H1307YCatTat11A.120.166667
ORF1ab/nsp31307H1307YCatTat11A.20.000662
ORF1ab/nsp31307H1307QcaTcaG11A.2.50.000499
ORF1ab/nsp31307H1307YCatTat11AE.80.000489
ORF1ab/nsp31307H1307XCaTTaG11All0
ORF1ab/nsp31307H1307CCAtTGt11All0
ORF1ab/nsp31307H1307del2CAt--t11All0
ORF1ab/nsp31307H1307TCAtACt11All0
ORF1ab/nsp31307H1307YCatTat11AU.30.00211
ORF1ab/nsp31307H1307LcAtcTt11AY.1020.000027
ORF1ab/nsp31307H1307QcaTcaG11AY.1030.000006
ORF1ab/nsp31307H1307YCatTat11AY.1050.000643
ORF1ab/nsp31307H1307HcaTcaC11AY.1100.000113
ORF1ab/nsp31307H1307NCatAat11AY.1110.000183
ORF1ab/nsp31307H1307delCAT---11AY.1160.000287
ORF1ab/nsp31307H1307QcaTcaG11AY.1170.000085
ORF1ab/nsp31307H1307RcAtcGt11AY.1180.000063
ORF1ab/nsp31307H1307delCAT---11AY.1200.000037
ORF1ab/nsp31307H1307QcaTcaA11AY.1200.000037
ORF1ab/nsp31307H1307QcaTcaA11AY.170.008197
ORF1ab/nsp31307H1307delCAT---11AY.190.00114
ORF1ab/nsp31307H1307YCatTat11AY.190.00114
ORF1ab/nsp31307H1307HcaTcaC11AY.200.000039
ORF1ab/nsp31307H1307RcAtcGt11AY.270.000065
ORF1ab/nsp31307H1307RcAtcGt11AY.290.000016
ORF1ab/nsp31307H1307LcAtcTt11AY.290.000016
ORF1ab/nsp31307H1307RcAtcGt11AY.3.10.000085
ORF1ab/nsp31307H1307HcaTcaC11AY.360.000148
ORF1ab/nsp31307H1307delCAT---11AY.360.000148
ORF1ab/nsp31307H1307YCatTat11AY.360.000148
ORF1ab/nsp31307H1307HcaTcaC11AY.380.000499
ORF1ab/nsp31307H1307YCatTat11AY.380.000499
ORF1ab/nsp31307H1307NCatAat11AY.390.000025
ORF1ab/nsp31307H1307PcAtcCt11AY.40.000002
ORF1ab/nsp31307H1307PcAtcCt11AY.4.2.10.000149
ORF1ab/nsp31307H1307RcAtcGt11AY.4.40.000409
ORF1ab/nsp31307H1307HcaTcaC11AY.420.00004
ORF1ab/nsp31307H1307QcaTcaA11AY.420.00004
ORF1ab/nsp31307H1307DCatGat11AY.420.00004
ORF1ab/nsp31307H1307PcAtcCt11AY.430.000004
ORF1ab/nsp31307H1307delCAT---11AY.440.000006
ORF1ab/nsp31307H1307CCAtTGt11AY.440.000006
ORF1ab/nsp31307H1307delCAT---11AY.460.000104
ORF1ab/nsp31307H1307YCatTat11AY.46.10.001027
ORF1ab/nsp31307H1307delCAT---11AY.46.20.000635
ORF1ab/nsp31307H1307delCAT---11AY.470.000031
ORF1ab/nsp31307H1307HcaTcaC11AY.470.000031
ORF1ab/nsp31307H1307DCatGat11AY.50.000021
ORF1ab/nsp31307H1307YCatTat11AY.5.30.000337
ORF1ab/nsp31307H1307YCatTat11AY.530.000288
ORF1ab/nsp31307H1307HcaTcaC11AY.530.000288
ORF1ab/nsp31307H1307NCatAat11AY.560.001605
ORF1ab/nsp31307H1307YCatTat11AY.570.000656
ORF1ab/nsp31307H1307QcaTcaA11AY.580.000907
ORF1ab/nsp31307H1307YCatTat11AY.590.00053
ORF1ab/nsp31307H1307delCAT---11AY.60.000041
ORF1ab/nsp31307H1307delCAT---11AY.600.000938
ORF1ab/nsp31307H1307YCatTat11AY.640.000595
ORF1ab/nsp31307H1307YCatTat11AY.650.000533
ORF1ab/nsp31307H1307NCatAat11AY.670.000464
ORF1ab/nsp31307H1307YCatTat11AY.680.000274
ORF1ab/nsp31307H1307HcaTcaC11AY.70.000196
ORF1ab/nsp31307H1307delCAT---11AY.70.000196
ORF1ab/nsp31307H1307delCAT---11AY.720.001361
ORF1ab/nsp31307H1307RcAtcGt11AY.750.000056
ORF1ab/nsp31307H1307delCAT---11AY.75.10.00018
ORF1ab/nsp31307H1307YCatTat11AY.780.001541
ORF1ab/nsp31307H1307XCaTTaG11AY.790.001211
ORF1ab/nsp31307H1307DCatGat11AY.800.001129
ORF1ab/nsp31307H1307PcATcCG11AY.840.000437
ORF1ab/nsp31307H1307YCatTat11AY.850.000427
ORF1ab/nsp31307H1307DCatGat11AY.850.000427
ORF1ab/nsp31307H1307QcaTcaA11AY.870.000833
ORF1ab/nsp31307H1307RcAtcGt11AY.880.000884
ORF1ab/nsp31307H1307delCAT---11AY.90.000068
ORF1ab/nsp31307H1307NCaTAaC11AY.9.20.000037
ORF1ab/nsp31307H1307HcaTcaC11AY.9.20.000037
ORF1ab/nsp31307H1307QcaTcaA11AY.9.20.000037
ORF1ab/nsp31307H1307YCatTat11AY.960.002075
ORF1ab/nsp31307H1307HcaTcaC11AY.980.000079
ORF1ab/nsp31307H1307delCAT---11AY.990.001049
ORF1ab/nsp31307H1307RcAtcGt11AZ.10.000867
ORF1ab/nsp31307H1307LcAtcTt11B0.000128
ORF1ab/nsp31307H1307PcAtcCt11B.10.000009
ORF1ab/nsp31307H1307DCatGat11B.10.000009
ORF1ab/nsp31307H1307NCatAat11B.1.10.000018
ORF1ab/nsp31307H1307YCatTat11B.1.1.1480.008772
ORF1ab/nsp31307H1307YCatTat11B.1.1.1600.02381
ORF1ab/nsp31307H1307YCatTat11B.1.1.1940.00495
ORF1ab/nsp31307H1307HcaTcaC11B.1.1.2140.000055
ORF1ab/nsp31307H1307NCatAat11B.1.1.2160.00089
ORF1ab/nsp31307H1307del1Cat-at11B.1.1.2260.005814
ORF1ab/nsp31307H1307YCatTat11B.1.1.2320.001815
ORF1ab/nsp31307H1307YCatTat11B.1.1.270.00565
ORF1ab/nsp31307H1307YCatTat11B.1.1.2800.003086
ORF1ab/nsp31307H1307delCAT---11B.1.1.3110.000358
ORF1ab/nsp31307H1307delCAT---11B.1.1.3120.001912
ORF1ab/nsp31307H1307YCatTat11B.1.1.3150.008475
ORF1ab/nsp31307H1307YCatTat11B.1.1.3180.000302
ORF1ab/nsp31307H1307YCatTat11B.1.1.330.000421
ORF1ab/nsp31307H1307delCAT---11B.1.1.3480.000796
ORF1ab/nsp31307H1307YCatTat11B.1.1.3630.005988
ORF1ab/nsp31307H1307YCatTat11B.1.1.3690.000446
ORF1ab/nsp31307H1307LcAtcTt11B.1.1.3690.000446
ORF1ab/nsp31307H1307del1Cat-at11B.1.1.370.000193
ORF1ab/nsp31307H1307delCAT---11B.1.1.370.000193
ORF1ab/nsp31307H1307YCatTat11B.1.1.3760.005952
ORF1ab/nsp31307H1307NCatAat11B.1.1.390.00051
ORF1ab/nsp31307H1307QcaTcaA11B.1.1.390.00051
ORF1ab/nsp31307H1307delCAT---11B.1.1.4090.002833
ORF1ab/nsp31307H1307QcaTcaA11B.1.1.4090.002833
ORF1ab/nsp31307H1307YCatTat11B.1.1.4200.001006
ORF1ab/nsp31307H1307YCatTat11B.1.1.5250.005464
ORF1ab/nsp31307H1307YCatTat11B.1.1.5260.003546
ORF1ab/nsp31307H1307PcAtcCt11B.1.1.70.000001
ORF1ab/nsp31307H1307del2CAt--t11B.1.1.70.000001
ORF1ab/nsp31307H1307TCAtACt11B.1.1.70.000001
ORF1ab/nsp31307H1307YCatTat11B.1.1260.001276
ORF1ab/nsp31307H1307delCAT---11B.1.1600.000031
ORF1ab/nsp31307H1307LcAtcTt11B.1.1600.000031
ORF1ab/nsp31307H1307QcaTcaA11B.1.160.140.002119
ORF1ab/nsp31307H1307YCatTat11B.1.160.260.002421
ORF1ab/nsp31307H1307NCatAat11B.1.160.260.002421
ORF1ab/nsp31307H1307LcAtcTt11B.1.160.90.007194
ORF1ab/nsp31307H1307HcaTcaC11B.1.1700.00431
ORF1ab/nsp31307H1307del1Cat-at11B.1.1770.000013
ORF1ab/nsp31307H1307delCAT---11B.1.177.110.001698
ORF1ab/nsp31307H1307HcaTcaC11B.1.177.120.000152
ORF1ab/nsp31307H1307YCatTat11B.1.177.120.000152
ORF1ab/nsp31307H1307delCAT---11B.1.177.150.000631
ORF1ab/nsp31307H1307YCatTat11B.1.177.170.000821
ORF1ab/nsp31307H1307delCAT---11B.1.177.170.000821
ORF1ab/nsp31307H1307LcAtcTt11B.1.177.170.000821
ORF1ab/nsp31307H1307YCatTat11B.1.177.210.000076
ORF1ab/nsp31307H1307YCatTat11B.1.177.480.003125
ORF1ab/nsp31307H1307delCAT---11B.1.177.510.004566
ORF1ab/nsp31307H1307delCAT---11B.1.177.560.000668
ORF1ab/nsp31307H1307delCAT---11B.1.177.580.001332
ORF1ab/nsp31307H1307YCatTat11B.1.177.60.000977
ORF1ab/nsp31307H1307delCAT---11B.1.177.60.000977
ORF1ab/nsp31307H1307delCAT---11B.1.177.690.001484
ORF1ab/nsp31307H1307delCAT---11B.1.177.70.000165
ORF1ab/nsp31307H1307QcaTcaG11B.1.177.810.000189
ORF1ab/nsp31307H1307YCatTat11B.1.177.820.000477
ORF1ab/nsp31307H1307NCatAat11B.1.177.860.000183
ORF1ab/nsp31307H1307delCAT---11B.1.177.90.001332
ORF1ab/nsp31307H1307RcAtcGt11B.1.177.90.001332
ORF1ab/nsp31307H1307YCatTat11B.1.1780.02381
ORF1ab/nsp31307H1307delCAT---11B.1.20.000009
ORF1ab/nsp31307H1307QcaTcaA11B.1.20.000009
ORF1ab/nsp31307H1307DCaTGaC11B.1.2100.002132
ORF1ab/nsp31307H1307YCatTat11B.1.2360.002053
ORF1ab/nsp31307H1307HcaTcaC11B.1.2400.000216
ORF1ab/nsp31307H1307YCatTat11B.1.2400.000216
ORF1ab/nsp31307H1307YCatTat11B.1.2410.000812
ORF1ab/nsp31307H1307YCatTat11B.1.2470.014925
ORF1ab/nsp31307H1307delCAT---11B.1.258.100.011364
ORF1ab/nsp31307H1307YCatTat11B.1.258.110.000396
ORF1ab/nsp31307H1307delCAT---11B.1.258.110.000396
ORF1ab/nsp31307H1307YCatTat11B.1.258.140.00098
ORF1ab/nsp31307H1307YCatTat11B.1.2790.000514
ORF1ab/nsp31307H1307YCatTat11B.1.2980.002114
ORF1ab/nsp31307H1307YCatTat11B.1.3290.000608
ORF1ab/nsp31307H1307YCatTat11B.1.3480.018182
ORF1ab/nsp31307H1307RcAtcGt11B.1.3510.00003
ORF1ab/nsp31307H1307YCatTat11B.1.351.20.000303
ORF1ab/nsp31307H1307YCatTat11B.1.351.50.0006
ORF1ab/nsp31307H1307YCatTat11B.1.3550.011111
ORF1ab/nsp31307H1307HcaTcaC11B.1.360.000146
ORF1ab/nsp31307H1307DCaTGaC11B.1.360.000146
ORF1ab/nsp31307H1307YCatTat11B.1.36.100.004785
ORF1ab/nsp31307H1307YCatTat11B.1.36.160.001425
ORF1ab/nsp31307H1307YCatTat11B.1.36.180.00042
ORF1ab/nsp31307H1307YCatTat11B.1.36.380.001642
ORF1ab/nsp31307H1307YCatTat11B.1.36.390.002217
ORF1ab/nsp31307H1307QcaTcaA11B.1.36.80.001
ORF1ab/nsp31307H1307LcAtcTt11B.1.3670.000792
ORF1ab/nsp31307H1307YCatTat11B.1.3890.001002
ORF1ab/nsp31307H1307YCatTat11B.1.3960.000706
ORF1ab/nsp31307H1307delCAT---11B.1.3990.001934
ORF1ab/nsp31307H1307YCatTat11B.1.3990.001934
ORF1ab/nsp31307H1307delCAT---11B.1.4090.000781
ORF1ab/nsp31307H1307LcAtcTt11B.1.4160.001269
ORF1ab/nsp31307H1307YCatTat11B.1.4240.008065
ORF1ab/nsp31307H1307YCatTat11B.1.4280.00102
ORF1ab/nsp31307H1307LcAtcTt11B.1.4290.000024
ORF1ab/nsp31307H1307YCatTat11B.1.4380.006536
ORF1ab/nsp31307H1307YCatTat11B.1.438.10.000107
ORF1ab/nsp31307H1307YCatTat11B.1.4520.013699
ORF1ab/nsp31307H1307YCatTat11B.1.4620.007246
ORF1ab/nsp31307H1307RcAtcGt11B.1.466.20.000391
ORF1ab/nsp31307H1307QcaTcaA11B.1.4970.000315
ORF1ab/nsp31307H1307YCatTat11B.1.4970.000315
ORF1ab/nsp31307H1307YCatTat11B.1.5170.000427
ORF1ab/nsp31307H1307RcAtcGt11B.1.5250.000113
ORF1ab/nsp31307H1307HcaTcaC11B.1.5260.000024
ORF1ab/nsp31307H1307YCatTat11B.1.5610.000397
ORF1ab/nsp31307H1307YCatTat11B.1.564.10.001577
ORF1ab/nsp31307H1307YCatTat11B.1.5820.000491
ORF1ab/nsp31307H1307LcAtcTt11B.1.5950.000261
ORF1ab/nsp31307H1307YCatTat11B.1.5970.00463
ORF1ab/nsp31307H1307YCatTat11B.1.6060.006024
ORF1ab/nsp31307H1307NCatAat11B.1.617.20.000004
ORF1ab/nsp31307H1307del1Cat-at11B.1.617.20.000004
ORF1ab/nsp31307H1307YCatTat11B.1.6200.000946
ORF1ab/nsp31307H1307DCatGat11B.1.6210.000089
ORF1ab/nsp31307H1307delCAT---11B.1.6210.000089
ORF1ab/nsp31307H1307YCatTat11B.1.6230.000536
ORF1ab/nsp31307H1307YCatTat11B.1.6280.000352
ORF1ab/nsp31307H1307delCAT---11B.1.6300.005236
ORF1ab/nsp31307H1307HcaTcaC11B.1.6370.000073
ORF1ab/nsp31307H1307QcaTcaA11B.1.9.50.005682
ORF1ab/nsp31307H1307YCatTat11B.1.9.50.005682
ORF1ab/nsp31307H1307YCatTat11B.30.000831
ORF1ab/nsp31307H1307YCatTat11B.40.002208
ORF1ab/nsp31307H1307YCatTat11B.450.003831
ORF1ab/nsp31307H1307YCatTat11B.6.60.000889
ORF1ab/nsp31307H1307YCatTat11C.140.004329
ORF1ab/nsp31307H1307YCatTat11C.160.00106
ORF1ab/nsp31307H1307LcAtcTt11C.350.000774
ORF1ab/nsp31307H1307RcAtcGt11C.370.000116
ORF1ab/nsp31307H1307YCatTat11C.37.10.002618
ORF1ab/nsp31307H1307LcAtcTt11D.20.000075
ORF1ab/nsp31307H1307YCatTat11N.10.016949
ORF1ab/nsp31307H1307HcaTcaC11P.10.000016
ORF1ab/nsp31307H1307delCAT---11P.10.000016
ORF1ab/nsp31307H1307NCatAat11P.10.000016
ORF1ab/nsp31307H1307RcAtcGt11P.10.000016
ORF1ab/nsp31307H1307DCatGat11P.1.10.000318
ORF1ab/nsp31307H1307YCatTat11P.1.130.000898
ORF1ab/nsp31307H1307delCAT---11P.1.150.000232
ORF1ab/nsp31307H1307QcaTcaA11P.1.150.000232
ORF1ab/nsp31307H1307delCAT---11Q.10.000126
ORF1ab/nsp31307H1307QcaTcaA11Q.10.000126
ORF1ab/nsp31307H1307YCatTat11Q.10.000126
ORF1ab/nsp31307H1307HcaTcaC11R.10.00009
ORF1ab/nsp31307H1307delCAT---11R.10.00009
ORF1ab/nsp31307H1307delCAT---11U.30.003861
ORF1ab/nsp31307H1307YCatTat11W.10.008696