CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1307 | H1307Y | H2125Y | nonsyn | Cat | Tat | 73871 | 73794 | 0.998958 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307Y | H2125Y | nonsyn | CaT | TaC | 73871 | 77 | 0.00104236 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307Q | H2125Q | nonsyn | caT | caA | 442 | 364 | 0.823529 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307Q | H2125Q | nonsyn | caT | caG | 442 | 78 | 0.176471 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307H | H2125H | syn | caT | caC | 336 | 336 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307del | H2125del | del | CAT | --- | 218 | 218 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307R | H2125R | nonsyn | cAt | cGt | 193 | 193 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307N | H2125N | nonsyn | Cat | Aat | 83 | 82 | 0.987952 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307N | H2125N | nonsyn | CaT | AaC | 83 | 1 | 0.0120482 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307D | H2125D | nonsyn | Cat | Gat | 57 | 55 | 0.964912 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307D | H2125D | nonsyn | CaT | GaC | 57 | 2 | 0.0350877 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307L | H2125L | nonsyn | cAt | cTt | 29 | 27 | 0.931035 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307L | H2125L | nonsyn | cAT | cTA | 29 | 1 | 0.0344828 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307L | H2125L | nonsyn | cAT | cTC | 29 | 1 | 0.0344828 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307P | H2125P | nonsyn | cAt | cCt | 10 | 9 | 0.9 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307P | H2125P | nonsyn | cAT | cCG | 10 | 1 | 0.1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307del1 | H2125del1 | del | Cat | -at | 6 | 6 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307F | H2125F | nonsyn | CAt | TTt | 2 | 1 | 0.5 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307F | H2125F | nonsyn | CAT | TTC | 2 | 1 | 0.5 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307T | H2125T | nonsyn | CAt | ACt | 1 | 1 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307X | H2125X | nonsyn | CaT | TaG | 1 | 1 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307del2 | H2125del2 | del | CAt | --t | 1 | 1 | 1 | 6638-6640 |
ORF1ab/nsp3 | 1307 | H1307C | H2125C | nonsyn | CAt | TGt | 1 | 1 | 1 | 6638-6640 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 73794 | 73871 | All | 0.014114 |
ORF1ab/nsp3 | 1307 | H1307Y | CaT | TaC | 77 | 73871 | All | 0.000015 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 66199 | 66275 | AY.44 | 0.402937 |
ORF1ab/nsp3 | 1307 | H1307Y | CaT | TaC | 76 | 66275 | AY.44 | 0.000463 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2686 | 2686 | B.1.617.2 | 0.010114 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1084 | 1084 | B.1.1.7 | 0.00097 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 539 | 539 | AY.4 | 0.000839 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 364 | 442 | All | 0.00007 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 78 | 442 | All | 0.000015 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 363 | 363 | AY.25 | 0.002183 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 336 | 336 | All | 0.000064 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 329 | 329 | B.1.177 | 0.004332 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 242 | 242 | AY.43 | 0.001072 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 218 | 218 | All | 0.000042 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 212 | 212 | AY.29 | 0.003344 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 193 | 193 | All | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 171 | 171 | B.1.567 | 0.57 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 127 | 127 | B.1.1.25 | 0.0722 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 121 | 121 | AY.103 | 0.000751 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 114 | 114 | B.1.1.351 | 0.318436 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 113 | 113 | AY.7 | 0.022148 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 109 | 109 | B.1.637 | 0.007965 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 97 | 97 | AD.2 | 0.021239 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 95 | 95 | B.1.1.7 | 0.000085 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 90 | 90 | B.1.2 | 0.000792 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 89 | 89 | B.1.1.7 | 0.00008 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 88 | 88 | P.1.14 | 0.004207 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 82 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307N | CaT | AaC | 1 | 83 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 76 | 76 | B.1 | 0.000696 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 62 | 73 | B.1.1.7 | 0.000056 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 11 | 73 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 35 | 61 | AY.4 | 0.000054 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 26 | 61 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 58 | 58 | AY.117 | 0.004902 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 55 | 57 | All | 0.000011 |
ORF1ab/nsp3 | 1307 | H1307D | CaT | GaC | 2 | 57 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 53 | 53 | AY.3 | 0.000527 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 52 | 52 | AY.39 | 0.001285 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 50 | 50 | AY.117 | 0.004226 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 47 | 47 | AY.7.1 | 0.005297 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 43 | 43 | B.1.1.519 | 0.001708 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 43 | 43 | P.1 | 0.000677 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 41 | 41 | B.1.1 | 0.000744 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 35 | 35 | AY.119 | 0.001236 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 30 | 30 | AY.45 | 0.003651 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 27 | 29 | All | 0.000005 |
ORF1ab/nsp3 | 1307 | H1307L | cAT | cTC | 1 | 29 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307L | cAT | cTA | 1 | 29 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 29 | 29 | B.1.429 | 0.000682 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 28 | 28 | P.1.15 | 0.006506 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 21 | 21 | B.1.234 | 0.002771 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 21 | 21 | B.1.427 | 0.00106 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 20 | 20 | B.1.237 | 0.099502 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 19 | 19 | AY.34 | 0.001842 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 19 | 19 | B.1.621 | 0.001682 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 17 | 17 | AY.81 | 0.033865 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 17 | 17 | B.1.177.60 | 0.003713 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 17 | 17 | C.26 | 0.125 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 14 | 14 | AY.6 | 0.000576 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 14 | 14 | B.1.213 | 0.208955 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 11 | 11 | B.1.388 | 1 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 9 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1307 | H1307P | cAT | cCG | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | B.1.177.8 | 0.007524 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 10 | 10 | B.1.575 | 0.003034 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 9 | 9 | B.1.1.216 | 0.008014 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 7 | 7 | AY.83 | 0.012069 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 5 | 5 | AY.87 | 0.004163 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | B.1.1.255 | 0.012121 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1307 | H1307L | cAT | cTA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307L | cAT | cTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307F | CAt | TTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307F | CAT | TTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307Y | CaT | TaC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp3 | 1307 | H1307F | CAT | TTC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307F | CAt | TTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 2 | 2 | B.1.104 | 0.00738 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.177.47 | 0.025974 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | A.12 | 0.166667 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1307 | H1307X | CaT | TaG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307C | CAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307del2 | CAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307T | CAt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1307 | H1307C | CAt | TGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1307 | H1307X | CaT | TaG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1307 | H1307P | cAT | cCG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1307 | H1307N | CaT | AaC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.160 | 0.02381 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1307 | H1307P | cAt | cCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1307 | H1307del2 | CAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1307 | H1307T | CAt | ACt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.178 | 0.02381 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1307 | H1307D | CaT | GaC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1307 | H1307D | CaT | GaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1307 | H1307del1 | Cat | -at | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1307 | H1307L | cAt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307N | Cat | Aat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307R | cAt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1307 | H1307D | Cat | Gat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1307 | H1307Q | caT | caA | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1307 | H1307H | caT | caC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1307 | H1307del | CAT | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1307 | H1307Y | Cat | Tat | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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