CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1306 | T1306I | T2124I | nonsyn | aCt | aTt | 13122 | 13120 | 0.999848 | 6635-6637 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 13120 | 13122 | All | 0.002509 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5491 | 5493 | B.1.1.7 | 0.004916 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1620 | 1620 | Q.2 | 0.993865 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1144 | 1144 | B.1.1.214 | 0.063443 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 503 | 503 | AY.4 | 0.000783 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 395 | 395 | B.1.177 | 0.005201 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 364 | 364 | AY.103 | 0.00226 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 317 | 317 | B.1.221 | 0.022517 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 208 | 208 | B.1 | 0.001905 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 202 | 202 | B.1.617.2 | 0.000761 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 176 | 176 | AY.3 | 0.001751 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 172 | 172 | B.1.1 | 0.00312 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 147 | 147 | AY.26 | 0.004162 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 139 | 139 | AY.43 | 0.000616 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 139 | 139 | AY.44 | 0.000846 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 113 | 113 | P.1 | 0.00178 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 112 | 112 | AY.25 | 0.000674 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 88 | 88 | B.1.2 | 0.000775 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 79 | 79 | B.1.523 | 0.193627 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 70 | 70 | B.1.351 | 0.002081 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 51 | 51 | AY.42 | 0.002052 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 46 | 46 | AY.47 | 0.001431 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 40 | 40 | P.1.14 | 0.001912 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 39 | 39 | AY.5 | 0.000805 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 37 | 37 | AE.8 | 0.018093 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 37 | 37 | AY.20 | 0.001438 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 37 | 37 | B.1.160 | 0.001154 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 32 | 32 | B.1.1.222 | 0.006528 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 31 | 31 | B.1.177.72 | 0.105085 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 31 | 31 | B.1.427 | 0.001565 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 30 | 30 | AY.39 | 0.000741 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 27 | 27 | AY.14 | 0.002376 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 27 | 27 | B.1.428.3 | 0.346154 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 27 | 27 | B.1.637 | 0.001973 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 25 | 25 | B.1.177.60 | 0.005461 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 24 | 24 | AY.45 | 0.00292 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 22 | 22 | C.37 | 0.002553 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 21 | 21 | AY.61 | 0.0022 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 19 | 19 | AY.27 | 0.00123 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 19 | 19 | B.1.139 | 0.01393 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 19 | 19 | P.2 | 0.003546 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 15 | 15 | B.1.595 | 0.003914 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 14 | 14 | B.1.177.4 | 0.002955 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 14 | 14 | B.1.177.57 | 0.003934 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 13 | 13 | AY.39.1 | 0.000515 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 13 | 13 | Q.1 | 0.001642 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 12 | 12 | AY.85 | 0.005126 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 12 | 12 | B.1.258.17 | 0.001248 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 9 | 9 | AY.59 | 0.004767 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 9 | 9 | B.1.517 | 0.003843 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | AU.2 | 0.01937 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | AY.4.4 | 0.003273 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | B.1.1.153 | 0.008762 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | B.1.160.14 | 0.016949 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | A.23.1 | 0.00493 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | B | 0.000895 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | B.1.521 | 0.034826 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 7 | 7 | B.1.591 | 0.074468 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | B.1.210 | 0.012793 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | B.1.222 | 0.010152 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | B.1.408 | 0.02214 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | B.1.565 | 0.004862 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | B.1.356 | 0.008636 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | B.1.478 | 0.058824 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | B.1.524 | 0.007032 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.1.280 | 0.012346 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.1.371 | 0.041667 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.106 | 0.125 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.415.1 | 0.030303 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 4 | 4 | C.23 | 0.023256 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | A.3 | 0.006289 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.5.1 | 0.011278 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.204 | 0.009119 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.210 | 0.017143 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.1.513 | 0.024691 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.221.4 | 0.008333 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.393 | 0.057143 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | B.46 | 0.041667 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 2 | 2 | Q.6 | 0.013245 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.274 | 0.011905 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.476 | 0.1 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1306 | T1306I | aCt | aTt | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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