CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1306

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31306T1306IT2124InonsynaCtaTt13122131200.9998486635-6637
ORF1ab/nsp31306T1306IT2124InonsynaCTaTC1312220.0001524166635-6637
ORF1ab/nsp31306T1306TT2124TsynacTacC162613340.8204186635-6637
ORF1ab/nsp31306T1306TT2124TsynacTacA16261600.0984016635-6637
ORF1ab/nsp31306T1306TT2124TsynacTacG16261320.08118086635-6637
ORF1ab/nsp31306T1306delT2124deldelACT---23323316635-6637
ORF1ab/nsp31306T1306NT2124NnonsynaCtaAt1901890.9947376635-6637
ORF1ab/nsp31306T1306NT2124NnonsynaCTaAC19010.005263166635-6637
ORF1ab/nsp31306T1306AT2124AnonsynActGct45440.9777786635-6637
ORF1ab/nsp31306T1306AT2124AnonsynAcTGcC4510.02222226635-6637
ORF1ab/nsp31306T1306ST2124SnonsynaCtaGt1690.56256635-6637
ORF1ab/nsp31306T1306ST2124SnonsynActTct1670.43756635-6637
ORF1ab/nsp31306T1306PT2124PnonsynActCct7716635-6637
ORF1ab/nsp31306T1306del2T2124del2delACt--t7716635-6637
ORF1ab/nsp31306T1306del1T2124del1delAct-ct530.66635-6637
ORF1ab/nsp31306T1306del1T2124del1delaCta-t520.46635-6637
ORF1ab/nsp31306T1306DT2124DnonsynACtGAt320.6666676635-6637
ORF1ab/nsp31306T1306DT2124DnonsynACTGAC310.3333336635-6637
ORF1ab/nsp31306T1306RT2124RnonsynaCTaGA2216635-6637
ORF1ab/nsp31306T1306FT2124FnonsynACtTTt210.56635-6637
ORF1ab/nsp31306T1306QT2124QnonsynACTCAG210.56635-6637
ORF1ab/nsp31306T1306QT2124QnonsynACTCAA210.56635-6637
ORF1ab/nsp31306T1306FT2124FnonsynACTTTC210.56635-6637
ORF1ab/nsp31306T1306LT2124LnonsynACtCTt1116635-6637

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31306T1306IaCtaTt1312013122All0.002509
ORF1ab/nsp31306T1306IaCTaTC213122All0
ORF1ab/nsp31306T1306IaCtaTt54915493B.1.1.70.004916
ORF1ab/nsp31306T1306IaCTaTC25493B.1.1.70.000002
ORF1ab/nsp31306T1306TacTacC13341626All0.000255
ORF1ab/nsp31306T1306TacTacA1601626All0.000031
ORF1ab/nsp31306T1306TacTacG1321626All0.000025
ORF1ab/nsp31306T1306IaCtaTt16201620Q.20.993865
ORF1ab/nsp31306T1306TacTacC11331160B.1.1.70.001014
ORF1ab/nsp31306T1306TacTacG241160B.1.1.70.000021
ORF1ab/nsp31306T1306TacTacA31160B.1.1.70.000003
ORF1ab/nsp31306T1306IaCtaTt11441144B.1.1.2140.063443
ORF1ab/nsp31306T1306IaCtaTt503503AY.40.000783
ORF1ab/nsp31306T1306IaCtaTt395395B.1.1770.005201
ORF1ab/nsp31306T1306IaCtaTt364364AY.1030.00226
ORF1ab/nsp31306T1306IaCtaTt317317B.1.2210.022517
ORF1ab/nsp31306T1306delACT---233233All0.000045
ORF1ab/nsp31306T1306IaCtaTt208208B.10.001905
ORF1ab/nsp31306T1306IaCtaTt202202B.1.617.20.000761
ORF1ab/nsp31306T1306NaCtaAt189190All0.000036
ORF1ab/nsp31306T1306NaCTaAC1190All0
ORF1ab/nsp31306T1306IaCtaTt176176AY.30.001751
ORF1ab/nsp31306T1306IaCtaTt172172B.1.10.00312
ORF1ab/nsp31306T1306TacTacA83171AY.40.000129
ORF1ab/nsp31306T1306TacTacG71171AY.40.000111
ORF1ab/nsp31306T1306TacTacC17171AY.40.000026
ORF1ab/nsp31306T1306IaCtaTt147147AY.260.004162
ORF1ab/nsp31306T1306IaCtaTt139139AY.430.000616
ORF1ab/nsp31306T1306IaCtaTt139139AY.440.000846
ORF1ab/nsp31306T1306IaCtaTt113113P.10.00178
ORF1ab/nsp31306T1306IaCtaTt112112AY.250.000674
ORF1ab/nsp31306T1306delACT---9696B.1.1.70.000086
ORF1ab/nsp31306T1306IaCtaTt8888B.1.20.000775
ORF1ab/nsp31306T1306IaCtaTt7979B.1.5230.193627
ORF1ab/nsp31306T1306IaCtaTt7070B.1.3510.002081
ORF1ab/nsp31306T1306TacTacC5051AY.4.20.001084
ORF1ab/nsp31306T1306TacTacG151AY.4.20.000022
ORF1ab/nsp31306T1306IaCtaTt5151AY.420.002052
ORF1ab/nsp31306T1306IaCtaTt4646AY.470.001431
ORF1ab/nsp31306T1306AActGct4445All0.000008
ORF1ab/nsp31306T1306AAcTGcC145All0
ORF1ab/nsp31306T1306NaCtaAt4242AY.40.000065
ORF1ab/nsp31306T1306IaCtaTt4040P.1.140.001912
ORF1ab/nsp31306T1306IaCtaTt3939AY.50.000805
ORF1ab/nsp31306T1306NaCtaAt3838B.1.1.70.000034
ORF1ab/nsp31306T1306IaCtaTt3737AE.80.018093
ORF1ab/nsp31306T1306IaCtaTt3737AY.200.001438
ORF1ab/nsp31306T1306IaCtaTt3737B.1.1600.001154
ORF1ab/nsp31306T1306IaCtaTt3232B.1.1.2220.006528
ORF1ab/nsp31306T1306TacTacA3232R.10.00288
ORF1ab/nsp31306T1306IaCtaTt3131B.1.177.720.105085
ORF1ab/nsp31306T1306IaCtaTt3131B.1.4270.001565
ORF1ab/nsp31306T1306IaCtaTt3030AY.1020.000795
ORF1ab/nsp31306T1306IaCtaTt3030AY.390.000741
ORF1ab/nsp31306T1306IaCtaTt2727AY.140.002376
ORF1ab/nsp31306T1306IaCtaTt2727B.1.428.30.346154
ORF1ab/nsp31306T1306IaCtaTt2727B.1.6370.001973
ORF1ab/nsp31306T1306IaCtaTt2626AY.290.00041
ORF1ab/nsp31306T1306TacTacC2626AY.440.000158
ORF1ab/nsp31306T1306IaCtaTt2525B.1.177.600.005461
ORF1ab/nsp31306T1306NaCtaAt2424AY.250.000144
ORF1ab/nsp31306T1306IaCtaTt2424AY.450.00292
ORF1ab/nsp31306T1306IaCtaTt2323B.1.1.5190.000913
ORF1ab/nsp31306T1306IaCtaTt2222C.370.002553
ORF1ab/nsp31306T1306IaCtaTt2121AY.610.0022
ORF1ab/nsp31306T1306IaCtaTt2121B.1.177.810.003976
ORF1ab/nsp31306T1306delACT---2020AY.430.000089
ORF1ab/nsp31306T1306IaCtaTt2020B.1.4290.000471
ORF1ab/nsp31306T1306IaCtaTt1919AY.270.00123
ORF1ab/nsp31306T1306IaCtaTt1919B.1.1390.01393
ORF1ab/nsp31306T1306delACT---1919B.1.617.20.000072
ORF1ab/nsp31306T1306TacTacC1419B.1.617.20.000053
ORF1ab/nsp31306T1306TacTacA319B.1.617.20.000011
ORF1ab/nsp31306T1306TacTacG219B.1.617.20.000008
ORF1ab/nsp31306T1306IaCtaTt1919P.20.003546
ORF1ab/nsp31306T1306SaCtaGt916All0.000002
ORF1ab/nsp31306T1306SActTct716All0.000001
ORF1ab/nsp31306T1306NaCtaAt1515B.1.1.5190.000596
ORF1ab/nsp31306T1306IaCtaTt1515B.1.5950.003914
ORF1ab/nsp31306T1306TacTacA714AY.30.00007
ORF1ab/nsp31306T1306TacTacG614AY.30.00006
ORF1ab/nsp31306T1306TacTacC114AY.30.00001
ORF1ab/nsp31306T1306IaCtaTt1414B.1.177.40.002955
ORF1ab/nsp31306T1306IaCtaTt1414B.1.177.570.003934
ORF1ab/nsp31306T1306IaCtaTt1414B.1.5260.000329
ORF1ab/nsp31306T1306IaCtaTt1414P.1.150.003253
ORF1ab/nsp31306T1306TacTacC1414P.1.150.003253
ORF1ab/nsp31306T1306IaCtaTt1313AY.39.10.000515
ORF1ab/nsp31306T1306delACT---1313B.1.1770.000171
ORF1ab/nsp31306T1306IaCtaTt1313B.1.2430.000905
ORF1ab/nsp31306T1306IaCtaTt1313B.1.2580.000865
ORF1ab/nsp31306T1306IaCtaTt1313Q.10.001642
ORF1ab/nsp31306T1306IaCtaTt1212AY.4.20.00026
ORF1ab/nsp31306T1306TacTacA1012AY.60.000411
ORF1ab/nsp31306T1306TacTacC212AY.60.000082
ORF1ab/nsp31306T1306IaCtaTt1212AY.850.005126
ORF1ab/nsp31306T1306IaCtaTt1212AY.9.10.001005
ORF1ab/nsp31306T1306IaCtaTt1212B.1.258.170.001248
ORF1ab/nsp31306T1306IaCtaTt1111AY.1000.000506
ORF1ab/nsp31306T1306delACT---1111AY.40.000017
ORF1ab/nsp31306T1306IaCtaTt1111AY.98.10.000533
ORF1ab/nsp31306T1306TacTacC610AY.1030.000037
ORF1ab/nsp31306T1306TacTacA410AY.1030.000025
ORF1ab/nsp31306T1306IaCtaTt1010AY.1180.000626
ORF1ab/nsp31306T1306IaCtaTt1010AY.1210.001353
ORF1ab/nsp31306T1306IaCtaTt1010AY.740.001156
ORF1ab/nsp31306T1306AActGct1010B.1.3110.002746
ORF1ab/nsp31306T1306IaCtaTt99AY.230.000628
ORF1ab/nsp31306T1306IaCtaTt99AY.590.004767
ORF1ab/nsp31306T1306IaCtaTt99B.1.2340.001187
ORF1ab/nsp31306T1306IaCtaTt99B.1.5170.003843
ORF1ab/nsp31306T1306IaCtaTt99B.1.617.10.001161
ORF1ab/nsp31306T1306IaCtaTt88AU.20.01937
ORF1ab/nsp31306T1306IaCtaTt88AY.3.10.000682
ORF1ab/nsp31306T1306IaCtaTt88AY.330.000534
ORF1ab/nsp31306T1306IaCtaTt88AY.4.40.003273
ORF1ab/nsp31306T1306NaCtaAt88AY.50.000165
ORF1ab/nsp31306T1306TacTacC68B.10.000055
ORF1ab/nsp31306T1306TacTacA28B.10.000018
ORF1ab/nsp31306T1306IaCtaTt88B.1.1.1530.008762
ORF1ab/nsp31306T1306IaCtaTt88B.1.160.140.016949
ORF1ab/nsp31306T1306NaCtaAt88B.1.3510.000238
ORF1ab/nsp31306T1306IaCtaTt88B.1.360.001167
ORF1ab/nsp31306T1306IaCtaTt88B.1.5960.000697
ORF1ab/nsp31306T1306IaCtaTt88B.1.6210.000708
ORF1ab/nsp31306T1306IaCtaTt77A.23.10.00493
ORF1ab/nsp31306T1306PActCct77All0.000001
ORF1ab/nsp31306T1306del2ACt--t77All0.000001
ORF1ab/nsp31306T1306IaCtaTt77AY.1170.000592
ORF1ab/nsp31306T1306IaCtaTt77AY.360.001037
ORF1ab/nsp31306T1306IaCtaTt77AY.750.000392
ORF1ab/nsp31306T1306IaCtaTt77B0.000895
ORF1ab/nsp31306T1306IaCtaTt77B.1.2410.005682
ORF1ab/nsp31306T1306TacTacC77B.1.2580.000466
ORF1ab/nsp31306T1306IaCtaTt77B.1.3960.00494
ORF1ab/nsp31306T1306IaCtaTt77B.1.5210.034826
ORF1ab/nsp31306T1306IaCtaTt77B.1.5910.074468
ORF1ab/nsp31306T1306TacTacC77P.20.001306
ORF1ab/nsp31306T1306IaCtaTt66AY.1190.000212
ORF1ab/nsp31306T1306NaCtaAt66AY.4.20.00013
ORF1ab/nsp31306T1306delACT---66AY.4.50.000645
ORF1ab/nsp31306T1306IaCtaTt66AY.460.000624
ORF1ab/nsp31306T1306IaCtaTt66AY.90.000406
ORF1ab/nsp31306T1306TacTacG66B.1.1.3810.24
ORF1ab/nsp31306T1306TacTacC46B.1.1.5190.000159
ORF1ab/nsp31306T1306TacTacA26B.1.1.5190.000079
ORF1ab/nsp31306T1306AActGct66B.1.1.70.000005
ORF1ab/nsp31306T1306IaCtaTt66B.1.2100.012793
ORF1ab/nsp31306T1306IaCtaTt66B.1.2220.010152
ORF1ab/nsp31306T1306IaCtaTt66B.1.4080.02214
ORF1ab/nsp31306T1306IaCtaTt66B.1.5650.004862
ORF1ab/nsp31306T1306IaCtaTt66D.20.00045
ORF1ab/nsp31306T1306IaCtaTt66Q.30.00087
ORF1ab/nsp31306T1306del1Act-ct35All0.000001
ORF1ab/nsp31306T1306del1aCta-t25All0
ORF1ab/nsp31306T1306NaCtaAt55AY.290.000079
ORF1ab/nsp31306T1306NaCtaAt55AY.30.00005
ORF1ab/nsp31306T1306IaCtaTt55AY.9.20.000184
ORF1ab/nsp31306T1306IaCtaTt55AY.920.001436
ORF1ab/nsp31306T1306delACT---55B.10.000046
ORF1ab/nsp31306T1306IaCtaTt55B.1.1.3170.002058
ORF1ab/nsp31306T1306IaCtaTt55B.1.177.70.000824
ORF1ab/nsp31306T1306IaCtaTt55B.1.3560.008636
ORF1ab/nsp31306T1306TacTacC55B.1.3690.001426
ORF1ab/nsp31306T1306IaCtaTt55B.1.4780.058824
ORF1ab/nsp31306T1306IaCtaTt55B.1.5240.007032
ORF1ab/nsp31306T1306NaCtaAt55B.1.617.20.000019
ORF1ab/nsp31306T1306IaCtaTt55P.1.100.001347
ORF1ab/nsp31306T1306IaCtaTt55P.1.170.000809
ORF1ab/nsp31306T1306IaCtaTt55Q.80.000825
ORF1ab/nsp31306T1306IaCtaTt440.222222
ORF1ab/nsp31306T1306SaCtaGt44AY.1000.000184
ORF1ab/nsp31306T1306IaCtaTt44AY.1200.000149
ORF1ab/nsp31306T1306TacTacC24AY.250.000012
ORF1ab/nsp31306T1306TacTacG24AY.250.000012
ORF1ab/nsp31306T1306IaCtaTt44AY.5.30.00135
ORF1ab/nsp31306T1306IaCtaTt44AY.540.000381
ORF1ab/nsp31306T1306TacTacG44AY.9.10.000335
ORF1ab/nsp31306T1306IaCtaTt44AY.910.002922
ORF1ab/nsp31306T1306AActGct44B.10.000037
ORF1ab/nsp31306T1306NaCtaAt44B.10.000037
ORF1ab/nsp31306T1306delACT---44B.1.10.000073
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.280.001245
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.2800.012346
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.3110.001433
ORF1ab/nsp31306T1306IaCtaTt44B.1.1.3710.041667
ORF1ab/nsp31306T1306IaCtaTt44B.1.1060.125
ORF1ab/nsp31306T1306IaCtaTt44B.1.177.580.005326
ORF1ab/nsp31306T1306IaCtaTt44B.1.351.20.00121
ORF1ab/nsp31306T1306IaCtaTt44B.1.3690.001141
ORF1ab/nsp31306T1306IaCtaTt44B.1.415.10.030303
ORF1ab/nsp31306T1306IaCtaTt44B.1.4280.004082
ORF1ab/nsp31306T1306IaCtaTt44C.230.023256
ORF1ab/nsp31306T1306TacTacC330.166667
ORF1ab/nsp31306T1306IaCtaTt33A.30.006289
ORF1ab/nsp31306T1306DACtGAt23All0
ORF1ab/nsp31306T1306DACTGAC13All0
ORF1ab/nsp31306T1306IaCtaTt33AY.1160.00086
ORF1ab/nsp31306T1306IaCtaTt33AY.16.10.00141
ORF1ab/nsp31306T1306TacTacG23AY.230.000139
ORF1ab/nsp31306T1306TacTacA13AY.230.00007
ORF1ab/nsp31306T1306TacTacA33AY.320.001597
ORF1ab/nsp31306T1306IaCtaTt33AY.34.10.00153
ORF1ab/nsp31306T1306IaCtaTt33AY.350.000699
ORF1ab/nsp31306T1306TacTacC23AY.430.000009
ORF1ab/nsp31306T1306TacTacA13AY.430.000004
ORF1ab/nsp31306T1306IaCtaTt33AY.46.40.000494
ORF1ab/nsp31306T1306IaCtaTt33AY.5.10.011278
ORF1ab/nsp31306T1306IaCtaTt33AY.530.000863
ORF1ab/nsp31306T1306IaCtaTt33AY.60.000123
ORF1ab/nsp31306T1306IaCtaTt33AY.70.000588
ORF1ab/nsp31306T1306IaCtaTt33AY.700.000626
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.1700.003741
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.1740.010135
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2040.009119
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2100.017143
ORF1ab/nsp31306T1306AActGct33B.1.1.2140.000166
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2160.002671
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.2630.004673
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.3690.001339
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.4090.008499
ORF1ab/nsp31306T1306TacTacC33B.1.1.630.001157
ORF1ab/nsp31306T1306IaCtaTt33B.1.1.700.001023
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.100.002634
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.350.002073
ORF1ab/nsp31306T1306IaCtaTt33B.1.177.540.001819
ORF1ab/nsp31306T1306delACT---33B.1.177.870.002183
ORF1ab/nsp31306T1306IaCtaTt33B.1.2400.000647
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.170.001482
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.290.001552
ORF1ab/nsp31306T1306IaCtaTt33B.1.36.80.003
ORF1ab/nsp31306T1306IaCtaTt33B.1.5250.000339
ORF1ab/nsp31306T1306IaCtaTt33B.1.5610.001191
ORF1ab/nsp31306T1306IaCtaTt33B.1.6090.001438
ORF1ab/nsp31306T1306IaCtaTt33B.1.6280.001057
ORF1ab/nsp31306T1306IaCtaTt33B.30.002492
ORF1ab/nsp31306T1306IaCtaTt33P.1.160.001122
ORF1ab/nsp31306T1306IaCtaTt33R.10.00027
ORF1ab/nsp31306T1306DACtGAt120.055556
ORF1ab/nsp31306T1306NaCTaAC120.055556
ORF1ab/nsp31306T1306DACTGAC120.055556
ORF1ab/nsp31306T1306AAcTGcC120.055556
ORF1ab/nsp31306T1306NaCtaAt120.055556
ORF1ab/nsp31306T1306AActGct120.055556
ORF1ab/nsp31306T1306IaCtaTt22A.10.000564
ORF1ab/nsp31306T1306TacTacC22A.50.003846
ORF1ab/nsp31306T1306IaCtaTt22AD.20.000438
ORF1ab/nsp31306T1306RaCTaGA22All0
ORF1ab/nsp31306T1306QACTCAG12All0
ORF1ab/nsp31306T1306QACTCAA12All0
ORF1ab/nsp31306T1306FACtTTt12All0
ORF1ab/nsp31306T1306FACTTTC12All0
ORF1ab/nsp31306T1306IaCtaTt22AU.30.004219
ORF1ab/nsp31306T1306NaCtaAt22AY.1030.000012
ORF1ab/nsp31306T1306TacTacC22AY.1110.000366
ORF1ab/nsp31306T1306SaCtaGt22AY.1130.000285
ORF1ab/nsp31306T1306IaCtaTt22AY.130.000322
ORF1ab/nsp31306T1306IaCtaTt22AY.240.000862
ORF1ab/nsp31306T1306delACT---22AY.250.000012
ORF1ab/nsp31306T1306NaCtaAt22AY.260.000057
ORF1ab/nsp31306T1306TacTacC22AY.300.000791
ORF1ab/nsp31306T1306IaCtaTt22AY.300.000791
ORF1ab/nsp31306T1306IaCtaTt22AY.340.000194
ORF1ab/nsp31306T1306IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31306T1306NaCtaAt22AY.440.000012
ORF1ab/nsp31306T1306AActGct22AY.440.000012
ORF1ab/nsp31306T1306TacTacG22AY.450.000243
ORF1ab/nsp31306T1306IaCtaTt22AY.46.10.002053
ORF1ab/nsp31306T1306delACT---22AY.50.000041
ORF1ab/nsp31306T1306IaCtaTt22AY.5.40.000553
ORF1ab/nsp31306T1306IaCtaTt22AY.520.001629
ORF1ab/nsp31306T1306IaCtaTt22AY.550.001835
ORF1ab/nsp31306T1306NaCtaAt22AY.560.00321
ORF1ab/nsp31306T1306IaCtaTt22AY.7.10.000225
ORF1ab/nsp31306T1306IaCtaTt22AY.75.10.000361
ORF1ab/nsp31306T1306IaCtaTt22AY.840.000875
ORF1ab/nsp31306T1306IaCtaTt22AY.870.001665
ORF1ab/nsp31306T1306TacTacA12B0.000128
ORF1ab/nsp31306T1306TacTacG12B0.000128
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.100.00223
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.2310.006192
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.2940.002532
ORF1ab/nsp31306T1306TacTacC22B.1.1.3060.000877
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.3150.016949
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.3180.000604
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.330.000842
ORF1ab/nsp31306T1306delACT---22B.1.1.370.000386
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.370.000386
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.4200.002012
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp31306T1306IaCtaTt22B.1.1.5130.024691
ORF1ab/nsp31306T1306SActTct12B.1.1.70.000001
ORF1ab/nsp31306T1306SaCtaGt12B.1.1.70.000001
ORF1ab/nsp31306T1306IaCtaTt22B.1.1260.002551
ORF1ab/nsp31306T1306TacTacC12B.1.1770.000013
ORF1ab/nsp31306T1306TacTacG12B.1.1770.000013
ORF1ab/nsp31306T1306delACT---22B.1.177.40.000422
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.730.001133
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.750.002081
ORF1ab/nsp31306T1306TacTacC22B.1.177.810.000379
ORF1ab/nsp31306T1306IaCtaTt22B.1.177.860.000367
ORF1ab/nsp31306T1306IaCtaTt22B.1.221.40.008333
ORF1ab/nsp31306T1306IaCtaTt22B.1.3490.00143
ORF1ab/nsp31306T1306delACT---22B.1.36.170.000988
ORF1ab/nsp31306T1306IaCtaTt22B.1.3610.002577
ORF1ab/nsp31306T1306IaCtaTt22B.1.3930.057143
ORF1ab/nsp31306T1306IaCtaTt22B.1.438.10.000215
ORF1ab/nsp31306T1306IaCtaTt22B.1.466.20.000782
ORF1ab/nsp31306T1306IaCtaTt22B.1.4740.003802
ORF1ab/nsp31306T1306IaCtaTt22B.1.5380.016129
ORF1ab/nsp31306T1306NaCtaAt22B.1.5560.015038
ORF1ab/nsp31306T1306IaCtaTt22B.1.5580.009132
ORF1ab/nsp31306T1306IaCtaTt22B.1.5750.000607
ORF1ab/nsp31306T1306IaCtaTt22B.400.000729
ORF1ab/nsp31306T1306IaCtaTt22B.460.041667
ORF1ab/nsp31306T1306IaCtaTt22C.40.02
ORF1ab/nsp31306T1306IaCtaTt22P.1.40.001953
ORF1ab/nsp31306T1306IaCtaTt22Q.60.013245
ORF1ab/nsp31306T1306delACT---11A0.000387
ORF1ab/nsp31306T1306IaCtaTt11A0.000387
ORF1ab/nsp31306T1306PActCct11A.20.000662
ORF1ab/nsp31306T1306IaCtaTt11A.2.40.003367
ORF1ab/nsp31306T1306NaCtaAt11A.2.40.003367
ORF1ab/nsp31306T1306IaCtaTt11A.2.5.20.001572
ORF1ab/nsp31306T1306IaCtaTt11A.50.001923
ORF1ab/nsp31306T1306IaCtaTt11A.60.005128
ORF1ab/nsp31306T1306IaCtaTt11AH.30.003802
ORF1ab/nsp31306T1306LACtCTt11All0
ORF1ab/nsp31306T1306IaCtaTt11AT.10.005128
ORF1ab/nsp31306T1306AActGct11AY.1020.000027
ORF1ab/nsp31306T1306NaCtaAt11AY.1020.000027
ORF1ab/nsp31306T1306AActGct11AY.1030.000006
ORF1ab/nsp31306T1306IaCtaTt11AY.1040.001984
ORF1ab/nsp31306T1306IaCtaTt11AY.1060.000335
ORF1ab/nsp31306T1306TacTacA11AY.1080.001103
ORF1ab/nsp31306T1306delACT---11AY.1080.001103
ORF1ab/nsp31306T1306IaCtaTt11AY.1100.000113
ORF1ab/nsp31306T1306TacTacC11AY.1130.000142
ORF1ab/nsp31306T1306IaCtaTt11AY.1140.000231
ORF1ab/nsp31306T1306IaCtaTt11AY.1150.005208
ORF1ab/nsp31306T1306delACT---11AY.1160.000287
ORF1ab/nsp31306T1306NaCtaAt11AY.1170.000085
ORF1ab/nsp31306T1306TacTacG11AY.1170.000085
ORF1ab/nsp31306T1306IaCtaTt11AY.120.000316
ORF1ab/nsp31306T1306TacTacC11AY.1200.000037
ORF1ab/nsp31306T1306delACT---11AY.1200.000037
ORF1ab/nsp31306T1306IaCtaTt11AY.120.10.000321
ORF1ab/nsp31306T1306SActTct11AY.130.000161
ORF1ab/nsp31306T1306IaCtaTt11AY.160.00038
ORF1ab/nsp31306T1306delACT---11AY.190.00114
ORF1ab/nsp31306T1306IaCtaTt11AY.20.000356
ORF1ab/nsp31306T1306TacTacA11AY.200.000039
ORF1ab/nsp31306T1306TacTacC11AY.23.10.000417
ORF1ab/nsp31306T1306AActGct11AY.23.10.000417
ORF1ab/nsp31306T1306AActGct11AY.250.000006
ORF1ab/nsp31306T1306TacTacA11AY.330.000067
ORF1ab/nsp31306T1306delACT---11AY.360.000148
ORF1ab/nsp31306T1306TacTacG11AY.370.000316
ORF1ab/nsp31306T1306TacTacG11AY.390.000025
ORF1ab/nsp31306T1306PActCct11AY.40.000002
ORF1ab/nsp31306T1306SActTct11AY.40.000002
ORF1ab/nsp31306T1306del1aCta-t11AY.40.000002
ORF1ab/nsp31306T1306del2ACt--t11AY.4.50.000107
ORF1ab/nsp31306T1306IaCtaTt11AY.4.50.000107
ORF1ab/nsp31306T1306TacTacA11AY.4.50.000107
ORF1ab/nsp31306T1306FACtTTt11AY.420.00004
ORF1ab/nsp31306T1306SActTct11AY.430.000004
ORF1ab/nsp31306T1306NaCtaAt11AY.430.000004
ORF1ab/nsp31306T1306delACT---11AY.440.000006
ORF1ab/nsp31306T1306del1aCta-t11AY.440.000006
ORF1ab/nsp31306T1306delACT---11AY.460.000104
ORF1ab/nsp31306T1306TacTacG11AY.46.10.001027
ORF1ab/nsp31306T1306delACT---11AY.46.20.000635
ORF1ab/nsp31306T1306AActGct11AY.46.40.000165
ORF1ab/nsp31306T1306IaCtaTt11AY.46.50.000198
ORF1ab/nsp31306T1306IaCtaTt11AY.46.60.000072
ORF1ab/nsp31306T1306del2ACt--t11AY.46.60.000072
ORF1ab/nsp31306T1306QACTCAG11AY.46.60.000072
ORF1ab/nsp31306T1306LACtCTt11AY.46.60.000072
ORF1ab/nsp31306T1306SaCtaGt11AY.470.000031
ORF1ab/nsp31306T1306delACT---11AY.470.000031
ORF1ab/nsp31306T1306PActCct11AY.470.000031
ORF1ab/nsp31306T1306IaCtaTt11AY.480.000465
ORF1ab/nsp31306T1306AActGct11AY.50.000021
ORF1ab/nsp31306T1306TacTacG11AY.50.000021
ORF1ab/nsp31306T1306IaCtaTt11AY.570.000656
ORF1ab/nsp31306T1306delACT---11AY.60.000041
ORF1ab/nsp31306T1306delACT---11AY.600.000938
ORF1ab/nsp31306T1306NaCtaAt11AY.610.000105
ORF1ab/nsp31306T1306IaCtaTt11AY.650.000533
ORF1ab/nsp31306T1306IaCtaTt11AY.660.00107
ORF1ab/nsp31306T1306TacTacC11AY.680.000274
ORF1ab/nsp31306T1306IaCtaTt11AY.680.000274
ORF1ab/nsp31306T1306AActGct11AY.690.000187
ORF1ab/nsp31306T1306TacTacA11AY.690.000187
ORF1ab/nsp31306T1306delACT---11AY.70.000196
ORF1ab/nsp31306T1306delACT---11AY.720.001361
ORF1ab/nsp31306T1306IaCtaTt11AY.720.001361
ORF1ab/nsp31306T1306delACT---11AY.75.10.00018
ORF1ab/nsp31306T1306del2ACt--t11AY.75.10.00018
ORF1ab/nsp31306T1306IaCtaTt11AY.80.000606
ORF1ab/nsp31306T1306TacTacA11AY.80.000606
ORF1ab/nsp31306T1306IaCtaTt11AY.800.001129
ORF1ab/nsp31306T1306delACT---11AY.840.000437
ORF1ab/nsp31306T1306IaCtaTt11AY.880.000884
ORF1ab/nsp31306T1306TacTacG11AY.890.004902
ORF1ab/nsp31306T1306delACT---11AY.90.000068
ORF1ab/nsp31306T1306del2ACt--t11AY.90.000068
ORF1ab/nsp31306T1306NaCtaAt11AY.9.10.000084
ORF1ab/nsp31306T1306QACTCAA11AY.9.20.000037
ORF1ab/nsp31306T1306del1Act-ct11AY.9.20.000037
ORF1ab/nsp31306T1306IaCtaTt11AY.950.000761
ORF1ab/nsp31306T1306IaCtaTt11AY.970.001701
ORF1ab/nsp31306T1306IaCtaTt11AY.980.000079
ORF1ab/nsp31306T1306AActGct11AY.980.000079
ORF1ab/nsp31306T1306delACT---11AY.990.001049
ORF1ab/nsp31306T1306IaCtaTt11AY.99.20.000092
ORF1ab/nsp31306T1306TacTacC11AY.99.20.000092
ORF1ab/nsp31306T1306IaCtaTt11AZ.30.00152
ORF1ab/nsp31306T1306del2ACt--t11B0.000128
ORF1ab/nsp31306T1306SActTct11B.10.000009
ORF1ab/nsp31306T1306PActCct11B.1.10.000018
ORF1ab/nsp31306T1306TacTacC11B.1.10.000018
ORF1ab/nsp31306T1306AActGct11B.1.10.000018
ORF1ab/nsp31306T1306NaCtaAt11B.1.10.000018
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.10.000327
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.1370.0125
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp31306T1306TacTacA11B.1.1.2200.001859
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2370.005405
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.250.000569
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2860.002899
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.2910.000742
ORF1ab/nsp31306T1306TacTacC11B.1.1.2980.000862
ORF1ab/nsp31306T1306delACT---11B.1.1.3110.000358
ORF1ab/nsp31306T1306delACT---11B.1.1.3120.001912
ORF1ab/nsp31306T1306NaCtaAt11B.1.1.3170.000412
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3230.014085
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3440.010753
ORF1ab/nsp31306T1306delACT---11B.1.1.3480.000796
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3480.000796
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3510.002793
ORF1ab/nsp31306T1306AActGct11B.1.1.3540.004386
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.3590.027778
ORF1ab/nsp31306T1306NaCtaAt11B.1.1.370.000193
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31306T1306delACT---11B.1.1.4090.002833
ORF1ab/nsp31306T1306TacTacC11B.1.1.4320.001266
ORF1ab/nsp31306T1306TacTacC11B.1.1.4640.001473
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.480.002874
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.5060.037037
ORF1ab/nsp31306T1306IaCtaTt11B.1.1.570.011494
ORF1ab/nsp31306T1306PActCct11B.1.1.70.000001
ORF1ab/nsp31306T1306del1Act-ct11B.1.1.70.000001
ORF1ab/nsp31306T1306IaCtaTt11B.1.1030.019231
ORF1ab/nsp31306T1306IaCtaTt11B.1.1190.010526
ORF1ab/nsp31306T1306IaCtaTt11B.1.1420.002899
ORF1ab/nsp31306T1306IaCtaTt11B.1.1470.000756
ORF1ab/nsp31306T1306TacTacG11B.1.1600.000031
ORF1ab/nsp31306T1306delACT---11B.1.1600.000031
ORF1ab/nsp31306T1306SActTct11B.1.1600.000031
ORF1ab/nsp31306T1306IaCtaTt11B.1.1650.011905
ORF1ab/nsp31306T1306IaCtaTt11B.1.1700.00431
ORF1ab/nsp31306T1306PActCct11B.1.1770.000013
ORF1ab/nsp31306T1306NaCtaAt11B.1.177.100.000878
ORF1ab/nsp31306T1306delACT---11B.1.177.110.001698
ORF1ab/nsp31306T1306NaCtaAt11B.1.177.150.000631
ORF1ab/nsp31306T1306delACT---11B.1.177.150.000631
ORF1ab/nsp31306T1306TacTacC11B.1.177.150.000631
ORF1ab/nsp31306T1306delACT---11B.1.177.170.000821
ORF1ab/nsp31306T1306NaCtaAt11B.1.177.210.000076
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.210.000076
ORF1ab/nsp31306T1306TacTacC11B.1.177.330.001645
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.410.0025
ORF1ab/nsp31306T1306TacTacC11B.1.177.420.000894
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.500.004695
ORF1ab/nsp31306T1306delACT---11B.1.177.510.004566
ORF1ab/nsp31306T1306TacTacA11B.1.177.540.000606
ORF1ab/nsp31306T1306delACT---11B.1.177.560.000668
ORF1ab/nsp31306T1306delACT---11B.1.177.580.001332
ORF1ab/nsp31306T1306delACT---11B.1.177.60.000977
ORF1ab/nsp31306T1306delACT---11B.1.177.690.001484
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.690.001484
ORF1ab/nsp31306T1306delACT---11B.1.177.70.000165
ORF1ab/nsp31306T1306IaCtaTt11B.1.177.790.002342
ORF1ab/nsp31306T1306delACT---11B.1.177.90.001332
ORF1ab/nsp31306T1306AActGct11B.1.1990.004132
ORF1ab/nsp31306T1306PActCct11B.1.20.000009
ORF1ab/nsp31306T1306del1Act-ct11B.1.20.000009
ORF1ab/nsp31306T1306delACT---11B.1.20.000009
ORF1ab/nsp31306T1306TacTacC11B.1.20.000009
ORF1ab/nsp31306T1306RaCTaGA11B.1.2100.002132
ORF1ab/nsp31306T1306IaCtaTt11B.1.214.20.0006
ORF1ab/nsp31306T1306IaCtaTt11B.1.2200.01087
ORF1ab/nsp31306T1306TacTacG11B.1.2210.000071
ORF1ab/nsp31306T1306TacTacG11B.1.221.20.004016
ORF1ab/nsp31306T1306IaCtaTt11B.1.230.006061
ORF1ab/nsp31306T1306IaCtaTt11B.1.2320.000537
ORF1ab/nsp31306T1306TacTacC11B.1.2340.000132
ORF1ab/nsp31306T1306TacTacC11B.1.2400.000216
ORF1ab/nsp31306T1306delACT---11B.1.2580.000067
ORF1ab/nsp31306T1306delACT---11B.1.258.100.011364
ORF1ab/nsp31306T1306delACT---11B.1.258.110.000396
ORF1ab/nsp31306T1306IaCtaTt11B.1.258.140.00098
ORF1ab/nsp31306T1306IaCtaTt11B.1.2650.001271
ORF1ab/nsp31306T1306NaCtaAt11B.1.2650.001271
ORF1ab/nsp31306T1306IaCtaTt11B.1.2740.011905
ORF1ab/nsp31306T1306TacTacC11B.1.2980.002114
ORF1ab/nsp31306T1306IaCtaTt11B.1.2980.002114
ORF1ab/nsp31306T1306NaCtaAt11B.1.3110.000275
ORF1ab/nsp31306T1306del2ACt--t11B.1.3110.000275
ORF1ab/nsp31306T1306IaCtaTt11B.1.3110.000275
ORF1ab/nsp31306T1306IaCtaTt11B.1.3360.002439
ORF1ab/nsp31306T1306IaCtaTt11B.1.3380.008621
ORF1ab/nsp31306T1306AActGct11B.1.3510.00003
ORF1ab/nsp31306T1306IaCtaTt11B.1.351.30.000876
ORF1ab/nsp31306T1306RaCTaGA11B.1.360.000146
ORF1ab/nsp31306T1306IaCtaTt11B.1.36.100.004785
ORF1ab/nsp31306T1306IaCtaTt11B.1.36.310.001751
ORF1ab/nsp31306T1306IaCtaTt11B.1.36.70.004
ORF1ab/nsp31306T1306IaCtaTt11B.1.3620.001541
ORF1ab/nsp31306T1306IaCtaTt11B.1.3670.000792
ORF1ab/nsp31306T1306IaCtaTt11B.1.3710.001122
ORF1ab/nsp31306T1306IaCtaTt11B.1.3750.00082
ORF1ab/nsp31306T1306IaCtaTt11B.1.3990.001934
ORF1ab/nsp31306T1306NaCtaAt11B.1.3990.001934
ORF1ab/nsp31306T1306IaCtaTt11B.1.4000.000429
ORF1ab/nsp31306T1306AActGct11B.1.4000.000429
ORF1ab/nsp31306T1306IaCtaTt11B.1.4040.001302
ORF1ab/nsp31306T1306delACT---11B.1.4090.000781
ORF1ab/nsp31306T1306IaCtaTt11B.1.4090.000781
ORF1ab/nsp31306T1306IaCtaTt11B.1.4160.001269
ORF1ab/nsp31306T1306FACTTTC11B.1.4270.00005
ORF1ab/nsp31306T1306NaCtaAt11B.1.4270.00005
ORF1ab/nsp31306T1306TacTacC11B.1.4330.003195
ORF1ab/nsp31306T1306TacTacC11B.1.438.10.000107
ORF1ab/nsp31306T1306NaCtaAt11B.1.438.10.000107
ORF1ab/nsp31306T1306IaCtaTt11B.1.4430.004673
ORF1ab/nsp31306T1306IaCtaTt11B.1.4510.008197
ORF1ab/nsp31306T1306IaCtaTt11B.1.4660.023256
ORF1ab/nsp31306T1306IaCtaTt11B.1.4670.04
ORF1ab/nsp31306T1306IaCtaTt11B.1.4760.1
ORF1ab/nsp31306T1306IaCtaTt11B.1.5160.001957
ORF1ab/nsp31306T1306TacTacG11B.1.5250.000113
ORF1ab/nsp31306T1306IaCtaTt11B.1.5300.007143
ORF1ab/nsp31306T1306del2ACt--t11B.1.5440.006024
ORF1ab/nsp31306T1306IaCtaTt11B.1.5490.007194
ORF1ab/nsp31306T1306NaCtaAt11B.1.5510.00129
ORF1ab/nsp31306T1306AActGct11B.1.5760.000907
ORF1ab/nsp31306T1306IaCtaTt11B.1.5760.000907
ORF1ab/nsp31306T1306IaCtaTt11B.1.5800.004065
ORF1ab/nsp31306T1306IaCtaTt11B.1.5810.009434
ORF1ab/nsp31306T1306SaCtaGt11B.1.5810.009434
ORF1ab/nsp31306T1306IaCtaTt11B.1.5890.007576
ORF1ab/nsp31306T1306IaCtaTt11B.1.595.10.005848
ORF1ab/nsp31306T1306AActGct11B.1.5960.000087
ORF1ab/nsp31306T1306TacTacC11B.1.5960.000087
ORF1ab/nsp31306T1306IaCtaTt11B.1.5970.00463
ORF1ab/nsp31306T1306AActGct11B.1.617.10.000129
ORF1ab/nsp31306T1306AActGct11B.1.617.20.000004
ORF1ab/nsp31306T1306DACtGAt11B.1.617.20.000004
ORF1ab/nsp31306T1306delACT---11B.1.617.30.002985
ORF1ab/nsp31306T1306delACT---11B.1.6210.000089
ORF1ab/nsp31306T1306IaCtaTt11B.1.621.10.000506
ORF1ab/nsp31306T1306IaCtaTt11B.1.6230.000536
ORF1ab/nsp31306T1306IaCtaTt11B.1.6250.002353
ORF1ab/nsp31306T1306delACT---11B.1.6300.005236
ORF1ab/nsp31306T1306IaCtaTt11B.1.6300.005236
ORF1ab/nsp31306T1306IaCtaTt11B.1.6380.052632
ORF1ab/nsp31306T1306IaCtaTt11B.1.930.000934
ORF1ab/nsp31306T1306IaCtaTt11B.230.002924
ORF1ab/nsp31306T1306IaCtaTt11C.160.00106
ORF1ab/nsp31306T1306IaCtaTt11C.350.000774
ORF1ab/nsp31306T1306SActTct11C.350.000774
ORF1ab/nsp31306T1306IaCtaTt11C.360.000911
ORF1ab/nsp31306T1306IaCtaTt11C.36.20.034483
ORF1ab/nsp31306T1306IaCtaTt11C.36.30.000567
ORF1ab/nsp31306T1306TacTacC11C.370.000116
ORF1ab/nsp31306T1306AActGct11D.20.000075
ORF1ab/nsp31306T1306IaCtaTt11N.50.001767
ORF1ab/nsp31306T1306TacTacC11P.10.000016
ORF1ab/nsp31306T1306delACT---11P.10.000016
ORF1ab/nsp31306T1306IaCtaTt11P.1.10.000318
ORF1ab/nsp31306T1306IaCtaTt11P.1.120.000484
ORF1ab/nsp31306T1306IaCtaTt11P.1.130.000898
ORF1ab/nsp31306T1306delACT---11P.1.150.000232
ORF1ab/nsp31306T1306delACT---11Q.10.000126
ORF1ab/nsp31306T1306delACT---11R.10.00009
ORF1ab/nsp31306T1306delACT---11U.30.003861
ORF1ab/nsp31306T1306IaCtaTt11Z.10.00289