CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1305 | A1305V | A2123V | nonsyn | gCt | gTt | 12813 | 12813 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305A | A2123A | syn | gcT | gcC | 956 | 940 | 0.983264 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305A | A2123A | syn | gcT | gcA | 956 | 8 | 0.0083682 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305A | A2123A | syn | gcT | gcG | 956 | 8 | 0.0083682 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del | A2123del | del | GCT | --- | 229 | 229 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305D | A2123D | nonsyn | gCt | gAt | 172 | 171 | 0.994186 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305D | A2123D | nonsyn | gCT | gAC | 172 | 1 | 0.00581395 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305T | A2123T | nonsyn | Gct | Act | 146 | 145 | 0.993151 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305T | A2123T | nonsyn | GcT | AcC | 146 | 1 | 0.00684932 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305S | A2123S | nonsyn | Gct | Tct | 116 | 116 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305P | A2123P | nonsyn | Gct | Cct | 17 | 17 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305G | A2123G | nonsyn | gCt | gGt | 5 | 5 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del2 | A2123del2 | del | GCt | --t | 5 | 3 | 0.6 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del1 | A2123del1 | del | Gct | -ct | 5 | 2 | 0.4 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del1 | A2123del1 | del | GcT | -cA | 5 | 2 | 0.4 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del2 | A2123del2 | del | gCT | g-- | 5 | 2 | 0.4 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305del1 | A2123del1 | del | gCt | g-t | 5 | 1 | 0.2 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305F | A2123F | nonsyn | GCt | TTt | 4 | 3 | 0.75 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305F | A2123F | nonsyn | GCT | TTC | 4 | 1 | 0.25 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305N | A2123N | nonsyn | GCt | AAt | 3 | 2 | 0.666667 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305N | A2123N | nonsyn | GCT | AAC | 3 | 1 | 0.333333 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305I | A2123I | nonsyn | GCT | ATA | 2 | 2 | 1 | 6632-6634 |
ORF1ab/nsp3 | 1305 | A1305C | A2123C | nonsyn | GCT | TGC | 1 | 1 | 1 | 6632-6634 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 12813 | 12813 | All | 0.002451 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2777 | 2777 | B.1.628 | 0.978506 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1982 | 1982 | B.1.1.7 | 0.001774 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1557 | 1557 | B.1.619.1 | 0.998717 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1528 | 1528 | AY.4 | 0.002378 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1113 | 1113 | B.1.619 | 0.969512 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 940 | 956 | All | 0.00018 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 8 | 956 | All | 0.000002 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 8 | 956 | All | 0.000002 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 330 | 330 | B.1.2 | 0.002906 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 278 | 278 | B.1.1.337 | 1 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 262 | 262 | B.1 | 0.0024 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 251 | 253 | B.1.1.7 | 0.000225 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 253 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 253 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 238 | 238 | B.1.617.2 | 0.000896 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 229 | 229 | All | 0.000044 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 203 | 203 | AY.106 | 0.067984 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 184 | 184 | B.1.240 | 0.039664 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 171 | 172 | All | 0.000033 |
ORF1ab/nsp3 | 1305 | A1305D | gCT | gAC | 1 | 172 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 153 | 153 | B.1.177.65 | 0.101796 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 145 | 146 | All | 0.000028 |
ORF1ab/nsp3 | 1305 | A1305T | GcT | AcC | 1 | 146 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 136 | 136 | AY.44 | 0.000828 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 125 | 125 | AY.4 | 0.000195 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 116 | 116 | All | 0.000022 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 104 | 104 | B.1.1 | 0.001887 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 102 | 102 | B.1.1.7 | 0.000091 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 96 | 96 | P.1 | 0.001512 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 95 | 95 | B.1.243 | 0.006611 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 92 | 92 | AY.3 | 0.000915 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 89 | 89 | AY.103 | 0.000553 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 76 | 76 | B.1.177 | 0.001001 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 70 | 70 | AY.118 | 0.004385 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 70 | 70 | AY.43 | 0.00031 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 60 | 60 | AY.120 | 0.002231 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 53 | 53 | AY.39 | 0.00131 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 50 | 50 | AY.25 | 0.000301 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 49 | 49 | B.1.177.86 | 0.008989 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 47 | 47 | AY.5 | 0.000971 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 45 | 45 | B.1.160 | 0.001403 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 42 | 42 | AY.75 | 0.002353 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 40 | 41 | AY.25 | 0.000241 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 41 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 38 | 38 | B.1.2 | 0.000335 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 37 | 37 | AY.34 | 0.003588 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 34 | 34 | AY.113 | 0.004841 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 34 | 34 | P.1.14 | 0.001625 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 32 | 32 | AY.4.2 | 0.000694 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 31 | 31 | AY.46.5 | 0.006151 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 30 | 30 | AY.98.1 | 0.001453 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 30 | 30 | B.1.351 | 0.000892 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 28 | 28 | B.1.258.17 | 0.002911 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 28 | 28 | B.1.429 | 0.000659 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 26 | 26 | AY.102 | 0.000689 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 26 | 26 | B.1.1.222 | 0.005304 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 25 | 25 | AY.13 | 0.004024 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 24 | 24 | AY.35 | 0.005593 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 24 | 24 | C.37 | 0.002786 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 23 | 23 | AY.100 | 0.001058 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 23 | 23 | AY.98 | 0.001817 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 21 | 21 | B.1.36 | 0.003064 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 20 | 20 | B.1.1.519 | 0.000794 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 20 | 20 | B.1.621 | 0.00177 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 19 | 19 | AY.117 | 0.001606 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 19 | 19 | AY.20 | 0.000738 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 19 | 19 | AY.9.1 | 0.001591 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 17 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 17 | 17 | AY.40 | 0.016393 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 17 | 17 | B.1.22 | 0.022398 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 15 | 15 | AY.118 | 0.00094 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 13 | 13 | B.1.36.29 | 0.006725 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 12 | 12 | B.1.177.60 | 0.002621 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 12 | 12 | B.1.577 | 0.008247 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 11 | 11 | Q.8 | 0.001814 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 9 | 10 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 10 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 10 | 10 | B.1.1.288 | 0.019157 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 10 | 10 | B.1.389 | 0.01002 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 10 | 10 | B.1.634 | 0.034247 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | AY.16.1 | 0.003759 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | AY.79 | 0.009685 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | B.1.214.2 | 0.004796 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | B.1.22 | 0.01054 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.1.300 | 0.075269 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.1.420 | 0.007042 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.276 | 0.118644 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | AY.114 | 0.001387 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | AY.55 | 0.005505 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | AY.86 | 0.004979 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 5 | 6 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | AD.2 | 0.001095 |
ORF1ab/nsp3 | 1305 | A1305G | gCt | gGt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305del2 | GCt | --t | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305del2 | gCT | g-- | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305del1 | Gct | -ct | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305del1 | GcT | -cA | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305del1 | gCt | g-t | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | B.1.1.389 | 0.030303 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | B.1.146 | 0.021186 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 5 | 5 | B.1.36.18 | 0.002101 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 1305 | A1305T | GcT | AcC | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp3 | 1305 | A1305F | GCt | TTt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305F | GCT | TTC | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.556 | 0.030075 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp3 | 1305 | A1305N | GCt | AAt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305N | GCT | AAC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 3 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 3 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.1.377 | 0.004144 |
ORF1ab/nsp3 | 1305 | A1305del2 | GCt | --t | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1305 | A1305del2 | gCT | g-- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.170 | 0.012931 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1305 | A1305del1 | GcT | -cA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305N | GCt | AAt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305D | gCT | gAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305N | GCT | AAC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp3 | 1305 | A1305I | GCT | ATA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 2 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | B.1.1.487 | 0.011173 |
ORF1ab/nsp3 | 1305 | A1305G | gCt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.243.1 | 0.044444 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.326 | 0.015152 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.360 | 0.025316 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcG | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp3 | 1305 | A1305C | GCT | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1305 | A1305F | GCt | TTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1305 | A1305G | gCt | gGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1305 | A1305C | GCT | TGC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1305 | A1305del2 | gCT | g-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1305 | A1305F | GCT | TTC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.444 | 0.142857 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1305 | A1305del1 | gCt | g-t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1305 | A1305del2 | GCt | --t | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.177.88 | 0.012346 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305F | GCt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305del1 | Gct | -ct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305G | gCt | gGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 1305 | A1305I | GCT | ATA | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.258.5 | 0.008772 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1305 | A1305I | GCT | ATA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1305 | A1305D | gCt | gAt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1305 | A1305N | GCt | AAt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1305 | A1305G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305del1 | Gct | -ct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1305 | A1305F | GCt | TTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1305 | A1305V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1305 | A1305T | Gct | Act | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1305 | A1305A | gcT | gcC | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1305 | A1305S | Gct | Tct | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1305 | A1305P | Gct | Cct | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1305 | A1305del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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