CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1305

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31305A1305VA2123VnonsyngCtgTt128131281316632-6634
ORF1ab/nsp31305A1305AA2123AsyngcTgcC9569400.9832646632-6634
ORF1ab/nsp31305A1305AA2123AsyngcTgcA95680.00836826632-6634
ORF1ab/nsp31305A1305AA2123AsyngcTgcG95680.00836826632-6634
ORF1ab/nsp31305A1305delA2123deldelGCT---22922916632-6634
ORF1ab/nsp31305A1305DA2123DnonsyngCtgAt1721710.9941866632-6634
ORF1ab/nsp31305A1305DA2123DnonsyngCTgAC17210.005813956632-6634
ORF1ab/nsp31305A1305TA2123TnonsynGctAct1461450.9931516632-6634
ORF1ab/nsp31305A1305TA2123TnonsynGcTAcC14610.006849326632-6634
ORF1ab/nsp31305A1305SA2123SnonsynGctTct11611616632-6634
ORF1ab/nsp31305A1305PA2123PnonsynGctCct171716632-6634
ORF1ab/nsp31305A1305GA2123GnonsyngCtgGt5516632-6634
ORF1ab/nsp31305A1305del2A2123del2delGCt--t530.66632-6634
ORF1ab/nsp31305A1305del1A2123del1delGct-ct520.46632-6634
ORF1ab/nsp31305A1305del1A2123del1delGcT-cA520.46632-6634
ORF1ab/nsp31305A1305del2A2123del2delgCTg--520.46632-6634
ORF1ab/nsp31305A1305del1A2123del1delgCtg-t510.26632-6634
ORF1ab/nsp31305A1305FA2123FnonsynGCtTTt430.756632-6634
ORF1ab/nsp31305A1305FA2123FnonsynGCTTTC410.256632-6634
ORF1ab/nsp31305A1305NA2123NnonsynGCtAAt320.6666676632-6634
ORF1ab/nsp31305A1305NA2123NnonsynGCTAAC310.3333336632-6634
ORF1ab/nsp31305A1305IA2123InonsynGCTATA2216632-6634
ORF1ab/nsp31305A1305CA2123CnonsynGCTTGC1116632-6634

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31305A1305VgCtgTt1281312813All0.002451
ORF1ab/nsp31305A1305VgCtgTt27772777B.1.6280.978506
ORF1ab/nsp31305A1305VgCtgTt19821982B.1.1.70.001774
ORF1ab/nsp31305A1305VgCtgTt15571557B.1.619.10.998717
ORF1ab/nsp31305A1305VgCtgTt15281528AY.40.002378
ORF1ab/nsp31305A1305VgCtgTt11131113B.1.6190.969512
ORF1ab/nsp31305A1305AgcTgcC940956All0.00018
ORF1ab/nsp31305A1305AgcTgcG8956All0.000002
ORF1ab/nsp31305A1305AgcTgcA8956All0.000002
ORF1ab/nsp31305A1305VgCtgTt330330B.1.20.002906
ORF1ab/nsp31305A1305VgCtgTt278278B.1.1.3371
ORF1ab/nsp31305A1305VgCtgTt262262B.10.0024
ORF1ab/nsp31305A1305AgcTgcC251253B.1.1.70.000225
ORF1ab/nsp31305A1305AgcTgcG1253B.1.1.70.000001
ORF1ab/nsp31305A1305AgcTgcA1253B.1.1.70.000001
ORF1ab/nsp31305A1305VgCtgTt238238B.1.617.20.000896
ORF1ab/nsp31305A1305delGCT---229229All0.000044
ORF1ab/nsp31305A1305AgcTgcC203203AY.1060.067984
ORF1ab/nsp31305A1305VgCtgTt184184B.1.2400.039664
ORF1ab/nsp31305A1305DgCtgAt171172All0.000033
ORF1ab/nsp31305A1305DgCTgAC1172All0
ORF1ab/nsp31305A1305VgCtgTt153153B.1.177.650.101796
ORF1ab/nsp31305A1305TGctAct145146All0.000028
ORF1ab/nsp31305A1305TGcTAcC1146All0
ORF1ab/nsp31305A1305VgCtgTt136136AY.440.000828
ORF1ab/nsp31305A1305DgCtgAt125125AY.40.000195
ORF1ab/nsp31305A1305SGctTct116116All0.000022
ORF1ab/nsp31305A1305VgCtgTt104104B.1.10.001887
ORF1ab/nsp31305A1305delGCT---102102B.1.1.70.000091
ORF1ab/nsp31305A1305VgCtgTt9696P.10.001512
ORF1ab/nsp31305A1305VgCtgTt9595B.1.2430.006611
ORF1ab/nsp31305A1305VgCtgTt9292AY.30.000915
ORF1ab/nsp31305A1305VgCtgTt9191AY.1030.000565
ORF1ab/nsp31305A1305AgcTgcC8989AY.1030.000553
ORF1ab/nsp31305A1305VgCtgTt7676B.1.1770.001001
ORF1ab/nsp31305A1305VgCtgTt7070AY.1180.004385
ORF1ab/nsp31305A1305VgCtgTt7070AY.430.00031
ORF1ab/nsp31305A1305VgCtgTt6060AY.1200.002231
ORF1ab/nsp31305A1305VgCtgTt5353AY.390.00131
ORF1ab/nsp31305A1305VgCtgTt5050AY.250.000301
ORF1ab/nsp31305A1305VgCtgTt4949B.1.177.860.008989
ORF1ab/nsp31305A1305VgCtgTt4747AY.50.000971
ORF1ab/nsp31305A1305VgCtgTt4545B.1.1600.001403
ORF1ab/nsp31305A1305VgCtgTt4242AY.750.002353
ORF1ab/nsp31305A1305AgcTgcC4041AY.250.000241
ORF1ab/nsp31305A1305AgcTgcG141AY.250.000006
ORF1ab/nsp31305A1305SGctTct3838B.1.20.000335
ORF1ab/nsp31305A1305AgcTgcC3737AY.340.003588
ORF1ab/nsp31305A1305AgcTgcC3535B.1.617.20.000132
ORF1ab/nsp31305A1305VgCtgTt3434AY.1130.004841
ORF1ab/nsp31305A1305AgcTgcC3434P.1.140.001625
ORF1ab/nsp31305A1305VgCtgTt3232AY.4.20.000694
ORF1ab/nsp31305A1305VgCtgTt3131AY.46.50.006151
ORF1ab/nsp31305A1305VgCtgTt3030AY.98.10.001453
ORF1ab/nsp31305A1305VgCtgTt3030B.1.3510.000892
ORF1ab/nsp31305A1305AgcTgcC2828AY.30.000278
ORF1ab/nsp31305A1305VgCtgTt2828B.1.258.170.002911
ORF1ab/nsp31305A1305VgCtgTt2828B.1.4290.000659
ORF1ab/nsp31305A1305VgCtgTt2626AY.1020.000689
ORF1ab/nsp31305A1305VgCtgTt2626B.1.1.2220.005304
ORF1ab/nsp31305A1305VgCtgTt2525AY.130.004024
ORF1ab/nsp31305A1305AgcTgcC2424AY.350.005593
ORF1ab/nsp31305A1305SGctTct2424AY.40.000037
ORF1ab/nsp31305A1305VgCtgTt2424C.370.002786
ORF1ab/nsp31305A1305VgCtgTt2323AY.1000.001058
ORF1ab/nsp31305A1305VgCtgTt2323AY.980.001817
ORF1ab/nsp31305A1305TGctAct2222AY.750.001232
ORF1ab/nsp31305A1305TGctAct2222B.1.1600.000686
ORF1ab/nsp31305A1305VgCtgTt2121B.1.360.003064
ORF1ab/nsp31305A1305VgCtgTt2020B.1.1.5190.000794
ORF1ab/nsp31305A1305VgCtgTt2020B.1.6210.00177
ORF1ab/nsp31305A1305VgCtgTt1919AY.1170.001606
ORF1ab/nsp31305A1305VgCtgTt1919AY.200.000738
ORF1ab/nsp31305A1305VgCtgTt1919AY.9.10.001591
ORF1ab/nsp31305A1305VgCtgTt1818AY.290.000284
ORF1ab/nsp31305A1305PGctCct1717All0.000003
ORF1ab/nsp31305A1305TGctAct1717AY.40.000026
ORF1ab/nsp31305A1305VgCtgTt1717AY.400.016393
ORF1ab/nsp31305A1305AgcTgcC1717B.1.220.022398
ORF1ab/nsp31305A1305delGCT---1616B.1.1770.000211
ORF1ab/nsp31305A1305VgCtgTt1616Q.10.002021
ORF1ab/nsp31305A1305DgCtgAt1515AY.1180.00094
ORF1ab/nsp31305A1305AgcTgcC1515AY.40.000023
ORF1ab/nsp31305A1305VgCtgTt1414AY.330.000935
ORF1ab/nsp31305A1305delGCT---1414AY.40.000022
ORF1ab/nsp31305A1305AgcTgcC1414B.1.20.000123
ORF1ab/nsp31305A1305VgCtgTt1414B.1.5260.000329
ORF1ab/nsp31305A1305VgCtgTt1313AY.470.000404
ORF1ab/nsp31305A1305VgCtgTt1313B.1.2580.000865
ORF1ab/nsp31305A1305VgCtgTt1313B.1.36.290.006725
ORF1ab/nsp31305A1305TGctAct1212AY.250.000072
ORF1ab/nsp31305A1305VgCtgTt1212B.1.177.600.002621
ORF1ab/nsp31305A1305VgCtgTt1212B.1.5770.008247
ORF1ab/nsp31305A1305delGCT---1212B.1.617.20.000045
ORF1ab/nsp31305A1305VgCtgTt1111AY.1190.000388
ORF1ab/nsp31305A1305VgCtgTt1111AY.230.000767
ORF1ab/nsp31305A1305AgcTgcC1111C.370.001277
ORF1ab/nsp31305A1305AgcTgcC1111Q.80.001814
ORF1ab/nsp31305A1305AgcTgcC1010AY.1200.000372
ORF1ab/nsp31305A1305AgcTgcC910AY.440.000055
ORF1ab/nsp31305A1305AgcTgcA110AY.440.000006
ORF1ab/nsp31305A1305VgCtgTt1010AY.75.10.001803
ORF1ab/nsp31305A1305VgCtgTt1010B.1.1.2880.019157
ORF1ab/nsp31305A1305VgCtgTt1010B.1.3890.01002
ORF1ab/nsp31305A1305VgCtgTt1010B.1.4270.000505
ORF1ab/nsp31305A1305VgCtgTt1010B.1.6340.034247
ORF1ab/nsp31305A1305VgCtgTt99AY.260.000255
ORF1ab/nsp31305A1305VgCtgTt99B.1.2340.001187
ORF1ab/nsp31305A1305AgcTgcC99P.10.000142
ORF1ab/nsp31305A1305VgCtgTt88AY.16.10.003759
ORF1ab/nsp31305A1305TGctAct88AY.260.000226
ORF1ab/nsp31305A1305VgCtgTt88AY.450.000973
ORF1ab/nsp31305A1305VgCtgTt88AY.740.000925
ORF1ab/nsp31305A1305VgCtgTt88AY.790.009685
ORF1ab/nsp31305A1305VgCtgTt88AY.9.20.000294
ORF1ab/nsp31305A1305VgCtgTt88B.1.1.280.00249
ORF1ab/nsp31305A1305VgCtgTt88B.1.1.330.003367
ORF1ab/nsp31305A1305AgcTgcC88B.1.1.5190.000318
ORF1ab/nsp31305A1305TGctAct88B.1.1.70.000007
ORF1ab/nsp31305A1305SGctTct88B.1.1.70.000007
ORF1ab/nsp31305A1305VgCtgTt88B.1.177.810.001515
ORF1ab/nsp31305A1305VgCtgTt88B.1.214.20.004796
ORF1ab/nsp31305A1305VgCtgTt88B.1.220.01054
ORF1ab/nsp31305A1305VgCtgTt88P.1.120.003872
ORF1ab/nsp31305A1305AgcTgcC77AY.1110.001282
ORF1ab/nsp31305A1305TGctAct77AY.30.00007
ORF1ab/nsp31305A1305delGCT---77AY.4.50.000752
ORF1ab/nsp31305A1305VgCtgTt77AY.420.000282
ORF1ab/nsp31305A1305delGCT---77B.10.000064
ORF1ab/nsp31305A1305VgCtgTt77B.1.1.2140.000388
ORF1ab/nsp31305A1305VgCtgTt77B.1.1.2160.006233
ORF1ab/nsp31305A1305VgCtgTt77B.1.1.3000.075269
ORF1ab/nsp31305A1305VgCtgTt77B.1.1.4200.007042
ORF1ab/nsp31305A1305VgCtgTt77B.1.2760.118644
ORF1ab/nsp31305A1305VgCtgTt77B.1.3690.001997
ORF1ab/nsp31305A1305VgCtgTt77B.1.5610.002779
ORF1ab/nsp31305A1305VgCtgTt77B.1.5960.00061
ORF1ab/nsp31305A1305TGctAct77B.1.617.20.000026
ORF1ab/nsp31305A1305VgCtgTt77P.1.140.000335
ORF1ab/nsp31305A1305VgCtgTt77P.1.150.001626
ORF1ab/nsp31305A1305TGctAct66AY.1030.000037
ORF1ab/nsp31305A1305VgCtgTt66AY.1140.001387
ORF1ab/nsp31305A1305VgCtgTt66AY.550.005505
ORF1ab/nsp31305A1305VgCtgTt66AY.60.000247
ORF1ab/nsp31305A1305VgCtgTt66AY.610.000629
ORF1ab/nsp31305A1305VgCtgTt66AY.860.004979
ORF1ab/nsp31305A1305AgcTgcC56B.1.1770.000066
ORF1ab/nsp31305A1305AgcTgcG16B.1.1770.000013
ORF1ab/nsp31305A1305VgCtgTt66B.1.2210.000426
ORF1ab/nsp31305A1305VgCtgTt66B.1.3960.004234
ORF1ab/nsp31305A1305VgCtgTt55AD.20.001095
ORF1ab/nsp31305A1305GgCtgGt55All0.000001
ORF1ab/nsp31305A1305del2GCt--t35All0.000001
ORF1ab/nsp31305A1305del2gCTg--25All0
ORF1ab/nsp31305A1305del1Gct-ct25All0
ORF1ab/nsp31305A1305del1GcT-cA25All0
ORF1ab/nsp31305A1305del1gCtg-t15All0
ORF1ab/nsp31305A1305VgCtgTt55AY.160.001898
ORF1ab/nsp31305A1305VgCtgTt55AY.320.002662
ORF1ab/nsp31305A1305delGCT---55AY.430.000022
ORF1ab/nsp31305A1305SGctTct55AY.430.000022
ORF1ab/nsp31305A1305VgCtgTt55AY.460.00052
ORF1ab/nsp31305A1305VgCtgTt55AY.650.002665
ORF1ab/nsp31305A1305VgCtgTt55B.1.1.3890.030303
ORF1ab/nsp31305A1305DgCtgAt55B.1.1.70.000004
ORF1ab/nsp31305A1305VgCtgTt55B.1.1460.021186
ORF1ab/nsp31305A1305TGctAct55B.1.2580.000333
ORF1ab/nsp31305A1305VgCtgTt55B.1.36.180.002101
ORF1ab/nsp31305A1305DgCtgAt55B.1.617.20.000019
ORF1ab/nsp31305A1305TGctAct340.166667
ORF1ab/nsp31305A1305TGcTAcC140.055556
ORF1ab/nsp31305A1305VgCtgTt44A.23.10.002817
ORF1ab/nsp31305A1305FGCtTTt34All0.000001
ORF1ab/nsp31305A1305FGCTTTC14All0
ORF1ab/nsp31305A1305AgcTgcC44AY.1190.000141
ORF1ab/nsp31305A1305VgCtgTt44AY.3.10.000341
ORF1ab/nsp31305A1305AgcTgcC44AY.430.000018
ORF1ab/nsp31305A1305VgCtgTt44AY.710.0019
ORF1ab/nsp31305A1305VgCtgTt44AY.840.00175
ORF1ab/nsp31305A1305VgCtgTt44B0.000511
ORF1ab/nsp31305A1305TGctAct44B.10.000037
ORF1ab/nsp31305A1305delGCT---44B.1.10.000073
ORF1ab/nsp31305A1305AgcTgcC34B.1.10.000054
ORF1ab/nsp31305A1305AgcTgcG14B.1.10.000018
ORF1ab/nsp31305A1305VgCtgTt44B.1.1.3060.001754
ORF1ab/nsp31305A1305VgCtgTt44B.1.177.320.005398
ORF1ab/nsp31305A1305VgCtgTt44B.1.5560.030075
ORF1ab/nsp31305A1305VgCtgTt44B.1.5680.004444
ORF1ab/nsp31305A1305VgCtgTt44B.1.5820.001963
ORF1ab/nsp31305A1305VgCtgTt44B.1.5950.001044
ORF1ab/nsp31305A1305VgCtgTt44B.1.6270.008081
ORF1ab/nsp31305A1305VgCtgTt44D.20.0003
ORF1ab/nsp31305A1305VgCtgTt44P.1.70.001277
ORF1ab/nsp31305A1305VgCtgTt44Q.30.00058
ORF1ab/nsp31305A1305VgCtgTt44Q.80.00066
ORF1ab/nsp31305A1305VgCtgTt44R.10.00036
ORF1ab/nsp31305A1305VgCtgTt33A.2.5.10.014423
ORF1ab/nsp31305A1305NGCtAAt23All0
ORF1ab/nsp31305A1305NGCTAAC13All0
ORF1ab/nsp31305A1305AgcTgcC23AY.200.000078
ORF1ab/nsp31305A1305AgcTgcA13AY.200.000039
ORF1ab/nsp31305A1305AgcTgcC33AY.230.000209
ORF1ab/nsp31305A1305VgCtgTt33AY.360.000445
ORF1ab/nsp31305A1305AgcTgcC33AY.980.000237
ORF1ab/nsp31305A1305DgCtgAt33B.10.000027
ORF1ab/nsp31305A1305AgcTgcC23B.10.000018
ORF1ab/nsp31305A1305AgcTgcG13B.10.000009
ORF1ab/nsp31305A1305VgCtgTt33B.1.1.250.001706
ORF1ab/nsp31305A1305VgCtgTt33B.1.1.3770.004144
ORF1ab/nsp31305A1305del2GCt--t23B.1.1.70.000002
ORF1ab/nsp31305A1305del2gCTg--13B.1.1.70.000001
ORF1ab/nsp31305A1305VgCtgTt33B.1.1700.012931
ORF1ab/nsp31305A1305VgCtgTt33B.1.177.730.001699
ORF1ab/nsp31305A1305delGCT---33B.1.177.870.002183
ORF1ab/nsp31305A1305VgCtgTt33B.1.2600.010033
ORF1ab/nsp31305A1305VgCtgTt33B.1.3110.000824
ORF1ab/nsp31305A1305DgCtgAt33B.1.3750.002459
ORF1ab/nsp31305A1305AgcTgcC33B.1.4290.000071
ORF1ab/nsp31305A1305VgCtgTt33B.1.466.20.001174
ORF1ab/nsp31305A1305VgCtgTt33B.1.6090.001438
ORF1ab/nsp31305A1305VgCtgTt33B.1.6370.000219
ORF1ab/nsp31305A1305VgCtgTt33P.1.160.001122
ORF1ab/nsp31305A1305VgCtgTt33P.1.40.00293
ORF1ab/nsp31305A1305VgCtgTt33P.20.00056
ORF1ab/nsp31305A1305del1GcT-cA220.111111
ORF1ab/nsp31305A1305DgCtgAt120.055556
ORF1ab/nsp31305A1305NGCtAAt120.055556
ORF1ab/nsp31305A1305DgCTgAC120.055556
ORF1ab/nsp31305A1305NGCTAAC120.055556
ORF1ab/nsp31305A1305VgCtgTt22A.190.018868
ORF1ab/nsp31305A1305IGCTATA22All0
ORF1ab/nsp31305A1305TGctAct22AY.1020.000053
ORF1ab/nsp31305A1305VgCtgTt22AY.1100.000225
ORF1ab/nsp31305A1305AgcTgcC22AY.1170.000169
ORF1ab/nsp31305A1305SGctTct22AY.1190.000071
ORF1ab/nsp31305A1305VgCtgTt22AY.120.2.10.000997
ORF1ab/nsp31305A1305VgCtgTt22AY.1210.000271
ORF1ab/nsp31305A1305SGctTct22AY.200.000078
ORF1ab/nsp31305A1305delGCT---22AY.250.000012
ORF1ab/nsp31305A1305AgcTgcC22AY.260.000057
ORF1ab/nsp31305A1305SGctTct22AY.30.00002
ORF1ab/nsp31305A1305SGctTct22AY.3.10.000171
ORF1ab/nsp31305A1305AgcTgcC22AY.330.000134
ORF1ab/nsp31305A1305VgCtgTt22AY.34.10.00102
ORF1ab/nsp31305A1305AgcTgcC22AY.360.000296
ORF1ab/nsp31305A1305SGctTct22AY.390.000049
ORF1ab/nsp31305A1305VgCtgTt22AY.39.10.000079
ORF1ab/nsp31305A1305VgCtgTt22AY.4.10.001475
ORF1ab/nsp31305A1305SGctTct22AY.4.50.000215
ORF1ab/nsp31305A1305VgCtgTt22AY.4.50.000215
ORF1ab/nsp31305A1305TGctAct22AY.440.000012
ORF1ab/nsp31305A1305AgcTgcC22AY.50.000041
ORF1ab/nsp31305A1305delGCT---22AY.50.000041
ORF1ab/nsp31305A1305VgCtgTt22AY.600.001876
ORF1ab/nsp31305A1305DgCtgAt22AY.610.00021
ORF1ab/nsp31305A1305delGCT---22AY.75.10.000361
ORF1ab/nsp31305A1305VgCtgTt22AY.770.002255
ORF1ab/nsp31305A1305SGctTct22AY.90.000135
ORF1ab/nsp31305A1305delGCT---22AY.90.000135
ORF1ab/nsp31305A1305VgCtgTt22AY.940.000885
ORF1ab/nsp31305A1305AgcTgcC22AY.98.10.000097
ORF1ab/nsp31305A1305VgCtgTt22AY.99.20.000184
ORF1ab/nsp31305A1305SGctTct22B.10.000018
ORF1ab/nsp31305A1305PGctCct22B.1.10.000036
ORF1ab/nsp31305A1305AgcTgcC12B.1.1.2220.000204
ORF1ab/nsp31305A1305AgcTgcA12B.1.1.2220.000204
ORF1ab/nsp31305A1305VgCtgTt22B.1.1.3480.001592
ORF1ab/nsp31305A1305delGCT---22B.1.1.370.000386
ORF1ab/nsp31305A1305SGctTct22B.1.1.3710.020833
ORF1ab/nsp31305A1305VgCtgTt22B.1.1.390.001019
ORF1ab/nsp31305A1305AgcTgcC22B.1.1.4870.011173
ORF1ab/nsp31305A1305GgCtgGt22B.1.1.70.000002
ORF1ab/nsp31305A1305VgCtgTt22B.1.1390.001466
ORF1ab/nsp31305A1305VgCtgTt22B.1.1670.015625
ORF1ab/nsp31305A1305VgCtgTt22B.1.177.210.000153
ORF1ab/nsp31305A1305delGCT---22B.1.177.40.000422
ORF1ab/nsp31305A1305DgCtgAt22B.1.177.870.001456
ORF1ab/nsp31305A1305VgCtgTt22B.1.2140.007326
ORF1ab/nsp31305A1305VgCtgTt22B.1.2320.001075
ORF1ab/nsp31305A1305VgCtgTt22B.1.243.10.044444
ORF1ab/nsp31305A1305VgCtgTt22B.1.3260.015152
ORF1ab/nsp31305A1305AgcTgcC22B.1.3510.000059
ORF1ab/nsp31305A1305VgCtgTt22B.1.36.10.002281
ORF1ab/nsp31305A1305delGCT---22B.1.36.170.000988
ORF1ab/nsp31305A1305VgCtgTt22B.1.36.70.008
ORF1ab/nsp31305A1305VgCtgTt22B.1.3600.025316
ORF1ab/nsp31305A1305AgcTgcA22B.1.4000.000858
ORF1ab/nsp31305A1305AgcTgcC12B.1.4270.00005
ORF1ab/nsp31305A1305AgcTgcG12B.1.4270.00005
ORF1ab/nsp31305A1305VgCtgTt22B.1.4480.005249
ORF1ab/nsp31305A1305VgCtgTt22B.1.5090.001732
ORF1ab/nsp31305A1305VgCtgTt22B.1.5250.000226
ORF1ab/nsp31305A1305VgCtgTt22B.1.5640.000852
ORF1ab/nsp31305A1305VgCtgTt22B.1.5650.001621
ORF1ab/nsp31305A1305AgcTgcG22B.1.5960.000174
ORF1ab/nsp31305A1305VgCtgTt22B.1.617.10.000258
ORF1ab/nsp31305A1305AgcTgcC22B.1.6210.000177
ORF1ab/nsp31305A1305VgCtgTt22B.1.6230.001073
ORF1ab/nsp31305A1305VgCtgTt22C.140.008658
ORF1ab/nsp31305A1305VgCtgTt22P.1.100.000539
ORF1ab/nsp31305A1305VgCtgTt22P.30.00319
ORF1ab/nsp31305A1305AgcTgcC110.055556
ORF1ab/nsp31305A1305delGCT---11A0.000387
ORF1ab/nsp31305A1305VgCtgTt11A.10.000282
ORF1ab/nsp31305A1305AgcTgcC11A.20.000662
ORF1ab/nsp31305A1305TGctAct11A.23.10.000704
ORF1ab/nsp31305A1305VgCtgTt11AA.10.007246
ORF1ab/nsp31305A1305PGctCct11AD.20.000219
ORF1ab/nsp31305A1305SGctTct11AD.20.000219
ORF1ab/nsp31305A1305VgCtgTt11AH.20.012048
ORF1ab/nsp31305A1305CGCTTGC11All0
ORF1ab/nsp31305A1305VgCtgTt11AW.10.003049
ORF1ab/nsp31305A1305TGctAct11AY.10.000396
ORF1ab/nsp31305A1305VgCtgTt11AY.10.000396
ORF1ab/nsp31305A1305VgCtgTt11AY.100.00053
ORF1ab/nsp31305A1305AgcTgcA11AY.1000.000046
ORF1ab/nsp31305A1305VgCtgTt11AY.1010.00049
ORF1ab/nsp31305A1305AgcTgcC11AY.1020.000027
ORF1ab/nsp31305A1305FGCtTTt11AY.1030.000006
ORF1ab/nsp31305A1305SGctTct11AY.1030.000006
ORF1ab/nsp31305A1305SGctTct11AY.1060.000335
ORF1ab/nsp31305A1305VgCtgTt11AY.1060.000335
ORF1ab/nsp31305A1305delGCT---11AY.1080.001103
ORF1ab/nsp31305A1305AgcTgcC11AY.1100.000113
ORF1ab/nsp31305A1305VgCtgTt11AY.1110.000183
ORF1ab/nsp31305A1305VgCtgTt11AY.1150.005208
ORF1ab/nsp31305A1305AgcTgcC11AY.1160.000287
ORF1ab/nsp31305A1305SGctTct11AY.1180.000063
ORF1ab/nsp31305A1305delGCT---11AY.120.000316
ORF1ab/nsp31305A1305delGCT---11AY.1200.000037
ORF1ab/nsp31305A1305VgCtgTt11AY.120.10.000321
ORF1ab/nsp31305A1305AgcTgcC11AY.1210.000135
ORF1ab/nsp31305A1305VgCtgTt11AY.140.000088
ORF1ab/nsp31305A1305SGctTct11AY.170.008197
ORF1ab/nsp31305A1305delGCT---11AY.190.00114
ORF1ab/nsp31305A1305PGctCct11AY.230.00007
ORF1ab/nsp31305A1305VgCtgTt11AY.240.000431
ORF1ab/nsp31305A1305SGctTct11AY.250.000006
ORF1ab/nsp31305A1305VgCtgTt11AY.270.000065
ORF1ab/nsp31305A1305SGctTct11AY.270.000065
ORF1ab/nsp31305A1305PGctCct11AY.30.00001
ORF1ab/nsp31305A1305DgCtgAt11AY.340.000097
ORF1ab/nsp31305A1305VgCtgTt11AY.340.000097
ORF1ab/nsp31305A1305delGCT---11AY.360.000148
ORF1ab/nsp31305A1305TGctAct11AY.390.000025
ORF1ab/nsp31305A1305AgcTgcC11AY.390.000025
ORF1ab/nsp31305A1305PGctCct11AY.39.10.00004
ORF1ab/nsp31305A1305GgCtgGt11AY.39.10.00004
ORF1ab/nsp31305A1305AgcTgcC11AY.4.20.000022
ORF1ab/nsp31305A1305VgCtgTt11AY.4.30.000842
ORF1ab/nsp31305A1305AgcTgcC11AY.410.000294
ORF1ab/nsp31305A1305VgCtgTt11AY.410.000294
ORF1ab/nsp31305A1305CGCTTGC11AY.420.00004
ORF1ab/nsp31305A1305TGctAct11AY.420.00004
ORF1ab/nsp31305A1305del2gCTg--11AY.430.000004
ORF1ab/nsp31305A1305TGctAct11AY.430.000004
ORF1ab/nsp31305A1305DgCtgAt11AY.430.000004
ORF1ab/nsp31305A1305SGctTct11AY.440.000006
ORF1ab/nsp31305A1305delGCT---11AY.440.000006
ORF1ab/nsp31305A1305AgcTgcC11AY.450.000122
ORF1ab/nsp31305A1305SGctTct11AY.460.000104
ORF1ab/nsp31305A1305DgCtgAt11AY.46.10.001027
ORF1ab/nsp31305A1305TGctAct11AY.46.10.001027
ORF1ab/nsp31305A1305delGCT---11AY.46.20.000635
ORF1ab/nsp31305A1305VgCtgTt11AY.46.40.000165
ORF1ab/nsp31305A1305FGCTTTC11AY.46.60.000072
ORF1ab/nsp31305A1305delGCT---11AY.46.60.000072
ORF1ab/nsp31305A1305VgCtgTt11AY.46.60.000072
ORF1ab/nsp31305A1305TGctAct11AY.46.60.000072
ORF1ab/nsp31305A1305VgCtgTt11AY.480.000465
ORF1ab/nsp31305A1305TGctAct11AY.50.000021
ORF1ab/nsp31305A1305AgcTgcC11AY.5.30.000337
ORF1ab/nsp31305A1305VgCtgTt11AY.5.40.000277
ORF1ab/nsp31305A1305DgCtgAt11AY.520.000814
ORF1ab/nsp31305A1305VgCtgTt11AY.520.000814
ORF1ab/nsp31305A1305AgcTgcC11AY.540.000095
ORF1ab/nsp31305A1305SGctTct11AY.580.000907
ORF1ab/nsp31305A1305VgCtgTt11AY.590.00053
ORF1ab/nsp31305A1305delGCT---11AY.60.000041
ORF1ab/nsp31305A1305TGctAct11AY.60.000041
ORF1ab/nsp31305A1305delGCT---11AY.600.000938
ORF1ab/nsp31305A1305AgcTgcC11AY.610.000105
ORF1ab/nsp31305A1305VgCtgTt11AY.620.000436
ORF1ab/nsp31305A1305VgCtgTt11AY.670.000464
ORF1ab/nsp31305A1305VgCtgTt11AY.690.000187
ORF1ab/nsp31305A1305VgCtgTt11AY.70.000196
ORF1ab/nsp31305A1305delGCT---11AY.70.000196
ORF1ab/nsp31305A1305AgcTgcC11AY.7.10.000113
ORF1ab/nsp31305A1305DgCtgAt11AY.7.10.000113
ORF1ab/nsp31305A1305VgCtgTt11AY.700.000209
ORF1ab/nsp31305A1305DgCtgAt11AY.700.000209
ORF1ab/nsp31305A1305VgCtgTt11AY.720.001361
ORF1ab/nsp31305A1305AgcTgcC11AY.790.001211
ORF1ab/nsp31305A1305SGctTct11AY.80.000606
ORF1ab/nsp31305A1305delGCT---11AY.840.000437
ORF1ab/nsp31305A1305VgCtgTt11AY.90.000068
ORF1ab/nsp31305A1305AgcTgcA11AY.9.10.000084
ORF1ab/nsp31305A1305delGCT---11AY.9.20.000037
ORF1ab/nsp31305A1305AgcTgcC11AY.9.20.000037
ORF1ab/nsp31305A1305AgcTgcC11AY.950.000761
ORF1ab/nsp31305A1305VgCtgTt11AY.990.001049
ORF1ab/nsp31305A1305delGCT---11AY.990.001049
ORF1ab/nsp31305A1305delGCT---11B0.000128
ORF1ab/nsp31305A1305PGctCct11B.10.000009
ORF1ab/nsp31305A1305DgCtgAt11B.1.10.000018
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.10.000327
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.1170.009709
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.1210.002427
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.1350.004695
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.1530.001095
ORF1ab/nsp31305A1305TGctAct11B.1.1.1860.003436
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.2040.00304
ORF1ab/nsp31305A1305SGctTct11B.1.1.2100.005714
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.2250.007194
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.2430.004082
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.2690.001353
ORF1ab/nsp31305A1305PGctCct11B.1.1.2890.002083
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.2940.001266
ORF1ab/nsp31305A1305AgcTgcC11B.1.1.3060.000438
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.3080.011765
ORF1ab/nsp31305A1305delGCT---11B.1.1.3110.000358
ORF1ab/nsp31305A1305delGCT---11B.1.1.3120.001912
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.3420.0625
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.3430.020833
ORF1ab/nsp31305A1305delGCT---11B.1.1.3480.000796
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4040.015873
ORF1ab/nsp31305A1305delGCT---11B.1.1.4090.002833
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4160.000905
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4190.007407
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4440.142857
ORF1ab/nsp31305A1305AgcTgcC11B.1.1.4640.001473
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.470.005348
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.4860.001577
ORF1ab/nsp31305A1305TGctAct11B.1.1.4860.001577
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.500.000679
ORF1ab/nsp31305A1305SGctTct11B.1.1.5190.00004
ORF1ab/nsp31305A1305VgCtgTt11B.1.1.5210.005348
ORF1ab/nsp31305A1305del1gCtg-t11B.1.1.70.000001
ORF1ab/nsp31305A1305PGctCct11B.1.1.70.000001
ORF1ab/nsp31305A1305VgCtgTt11B.1.1100.004525
ORF1ab/nsp31305A1305VgCtgTt11B.1.1400.018868
ORF1ab/nsp31305A1305VgCtgTt11B.1.1570.002985
ORF1ab/nsp31305A1305SGctTct11B.1.1600.000031
ORF1ab/nsp31305A1305delGCT---11B.1.1600.000031
ORF1ab/nsp31305A1305AgcTgcC11B.1.1600.000031
ORF1ab/nsp31305A1305AgcTgcC11B.1.160.160.000929
ORF1ab/nsp31305A1305AgcTgcC11B.1.1700.00431
ORF1ab/nsp31305A1305PGctCct11B.1.1700.00431
ORF1ab/nsp31305A1305SGctTct11B.1.1770.000013
ORF1ab/nsp31305A1305DgCtgAt11B.1.1770.000013
ORF1ab/nsp31305A1305delGCT---11B.1.177.110.001698
ORF1ab/nsp31305A1305delGCT---11B.1.177.150.000631
ORF1ab/nsp31305A1305delGCT---11B.1.177.170.000821
ORF1ab/nsp31305A1305AgcTgcC11B.1.177.200.001517
ORF1ab/nsp31305A1305AgcTgcC11B.1.177.210.000076
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.310.011494
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.440.000519
ORF1ab/nsp31305A1305delGCT---11B.1.177.510.004566
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.520.001757
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.540.000606
ORF1ab/nsp31305A1305delGCT---11B.1.177.560.000668
ORF1ab/nsp31305A1305del2GCt--t11B.1.177.570.000281
ORF1ab/nsp31305A1305delGCT---11B.1.177.580.001332
ORF1ab/nsp31305A1305delGCT---11B.1.177.60.000977
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.60.000977
ORF1ab/nsp31305A1305DgCtgAt11B.1.177.650.000665
ORF1ab/nsp31305A1305delGCT---11B.1.177.690.001484
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31305A1305delGCT---11B.1.177.70.000165
ORF1ab/nsp31305A1305TGctAct11B.1.177.860.000183
ORF1ab/nsp31305A1305PGctCct11B.1.177.870.000728
ORF1ab/nsp31305A1305VgCtgTt11B.1.177.880.012346
ORF1ab/nsp31305A1305delGCT---11B.1.177.90.001332
ORF1ab/nsp31305A1305TGctAct11B.1.20.000009
ORF1ab/nsp31305A1305FGCtTTt11B.1.20.000009
ORF1ab/nsp31305A1305del1Gct-ct11B.1.20.000009
ORF1ab/nsp31305A1305delGCT---11B.1.20.000009
ORF1ab/nsp31305A1305GgCtgGt11B.1.20.000009
ORF1ab/nsp31305A1305VgCtgTt11B.1.2010.005682
ORF1ab/nsp31305A1305IGCTATA11B.1.2100.002132
ORF1ab/nsp31305A1305SGctTct11B.1.2340.000132
ORF1ab/nsp31305A1305AgcTgcC11B.1.2430.00007
ORF1ab/nsp31305A1305VgCtgTt11B.1.2470.014925
ORF1ab/nsp31305A1305delGCT---11B.1.2580.000067
ORF1ab/nsp31305A1305delGCT---11B.1.258.100.011364
ORF1ab/nsp31305A1305delGCT---11B.1.258.110.000396
ORF1ab/nsp31305A1305VgCtgTt11B.1.258.110.000396
ORF1ab/nsp31305A1305VgCtgTt11B.1.258.50.008772
ORF1ab/nsp31305A1305VgCtgTt11B.1.2700.005618
ORF1ab/nsp31305A1305VgCtgTt11B.1.2840.013158
ORF1ab/nsp31305A1305PGctCct11B.1.3110.000275
ORF1ab/nsp31305A1305VgCtgTt11B.1.3230.020833
ORF1ab/nsp31305A1305VgCtgTt11B.1.3350.010309
ORF1ab/nsp31305A1305SGctTct11B.1.3380.008621
ORF1ab/nsp31305A1305VgCtgTt11B.1.3490.000715
ORF1ab/nsp31305A1305PGctCct11B.1.3510.00003
ORF1ab/nsp31305A1305VgCtgTt11B.1.351.20.000303
ORF1ab/nsp31305A1305AgcTgcC11B.1.351.30.000876
ORF1ab/nsp31305A1305PGctCct11B.1.360.000146
ORF1ab/nsp31305A1305IGCTATA11B.1.360.000146
ORF1ab/nsp31305A1305AgcTgcC11B.1.360.000146
ORF1ab/nsp31305A1305DgCtgAt11B.1.36.170.000494
ORF1ab/nsp31305A1305NGCtAAt11B.1.36.170.000494
ORF1ab/nsp31305A1305TGctAct11B.1.36.170.000494
ORF1ab/nsp31305A1305VgCtgTt11B.1.36.210.00216
ORF1ab/nsp31305A1305VgCtgTt11B.1.36.280.005747
ORF1ab/nsp31305A1305AgcTgcC11B.1.3670.000792
ORF1ab/nsp31305A1305VgCtgTt11B.1.3910.001127
ORF1ab/nsp31305A1305delGCT---11B.1.4090.000781
ORF1ab/nsp31305A1305VgCtgTt11B.1.4090.000781
ORF1ab/nsp31305A1305VgCtgTt11B.1.4230.010204
ORF1ab/nsp31305A1305VgCtgTt11B.1.4250.002994
ORF1ab/nsp31305A1305SGctTct11B.1.4270.00005
ORF1ab/nsp31305A1305SGctTct11B.1.4290.000024
ORF1ab/nsp31305A1305PGctCct11B.1.429.10.012048
ORF1ab/nsp31305A1305VgCtgTt11B.1.4320.011236
ORF1ab/nsp31305A1305VgCtgTt11B.1.4330.003195
ORF1ab/nsp31305A1305VgCtgTt11B.1.4360.001029
ORF1ab/nsp31305A1305AgcTgcC11B.1.4410.009615
ORF1ab/nsp31305A1305VgCtgTt11B.1.4500.011364
ORF1ab/nsp31305A1305TGctAct11B.1.466.20.000391
ORF1ab/nsp31305A1305VgCtgTt11B.1.5170.000427
ORF1ab/nsp31305A1305AgcTgcC11B.1.5260.000024
ORF1ab/nsp31305A1305SGctTct11B.1.5270.003704
ORF1ab/nsp31305A1305delGCT---11B.1.5440.006024
ORF1ab/nsp31305A1305VgCtgTt11B.1.5500.013699
ORF1ab/nsp31305A1305AgcTgcC11B.1.5610.000397
ORF1ab/nsp31305A1305VgCtgTt11B.1.5760.000907
ORF1ab/nsp31305A1305AgcTgcC11B.1.5950.000261
ORF1ab/nsp31305A1305VgCtgTt11B.1.595.10.005848
ORF1ab/nsp31305A1305TGctAct11B.1.5960.000087
ORF1ab/nsp31305A1305AgcTgcC11B.1.617.10.000129
ORF1ab/nsp31305A1305GgCtgGt11B.1.617.20.000004
ORF1ab/nsp31305A1305del1Gct-ct11B.1.617.20.000004
ORF1ab/nsp31305A1305SGctTct11B.1.617.20.000004
ORF1ab/nsp31305A1305delGCT---11B.1.617.30.002985
ORF1ab/nsp31305A1305delGCT---11B.1.6210.000089
ORF1ab/nsp31305A1305TGctAct11B.1.6210.000089
ORF1ab/nsp31305A1305VgCtgTt11B.1.621.10.000506
ORF1ab/nsp31305A1305AgcTgcC11B.1.621.10.000506
ORF1ab/nsp31305A1305FGCtTTt11B.1.6280.000352
ORF1ab/nsp31305A1305delGCT---11B.1.6300.005236
ORF1ab/nsp31305A1305AgcTgcC11B.1.6370.000073
ORF1ab/nsp31305A1305VgCtgTt11B.1.930.000934
ORF1ab/nsp31305A1305AgcTgcC11B.100.008264
ORF1ab/nsp31305A1305VgCtgTt11B.350.007812
ORF1ab/nsp31305A1305VgCtgTt11B.40.002208
ORF1ab/nsp31305A1305VgCtgTt11B.400.000364
ORF1ab/nsp31305A1305VgCtgTt11B.570.015152
ORF1ab/nsp31305A1305AgcTgcC11B.60.00091
ORF1ab/nsp31305A1305VgCtgTt11B.6.60.000889
ORF1ab/nsp31305A1305VgCtgTt11C.270.018519
ORF1ab/nsp31305A1305TGctAct11C.350.000774
ORF1ab/nsp31305A1305VgCtgTt11C.360.000911
ORF1ab/nsp31305A1305VgCtgTt11D.50.004975
ORF1ab/nsp31305A1305delGCT---11P.10.000016
ORF1ab/nsp31305A1305TGctAct11P.10.000016
ORF1ab/nsp31305A1305PGctCct11P.1.10.000318
ORF1ab/nsp31305A1305VgCtgTt11P.1.10.000318
ORF1ab/nsp31305A1305SGctTct11P.1.140.000048
ORF1ab/nsp31305A1305delGCT---11P.1.150.000232
ORF1ab/nsp31305A1305AgcTgcC11P.1.170.000162
ORF1ab/nsp31305A1305VgCtgTt11P.1.170.000162
ORF1ab/nsp31305A1305TGctAct11P.20.000187
ORF1ab/nsp31305A1305delGCT---11Q.10.000126
ORF1ab/nsp31305A1305AgcTgcC11Q.70.001111
ORF1ab/nsp31305A1305SGctTct11R.10.00009
ORF1ab/nsp31305A1305delGCT---11R.10.00009
ORF1ab/nsp31305A1305PGctCct11R.10.00009
ORF1ab/nsp31305A1305delGCT---11U.30.003861