CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1303 | T1303I | T2121I | nonsyn | aCc | aTc | 8438 | 8406 | 0.996208 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303I | T2121I | nonsyn | aCC | aTT | 8438 | 32 | 0.00379237 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303T | T2121T | syn | acC | acT | 4794 | 4659 | 0.97184 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303T | T2121T | syn | acC | acA | 4794 | 113 | 0.0235711 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303T | T2121T | syn | acC | acG | 4794 | 22 | 0.00458907 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del | T2121del | del | ACC | --- | 230 | 230 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303A | T2121A | nonsyn | Acc | Gcc | 225 | 211 | 0.937778 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303A | T2121A | nonsyn | AcC | GcT | 225 | 14 | 0.0622222 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303N | T2121N | nonsyn | aCc | aAc | 99 | 98 | 0.989899 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303N | T2121N | nonsyn | aCC | aAT | 99 | 1 | 0.010101 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del1 | T2121del1 | del | aCc | a-c | 14 | 7 | 0.5 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del1 | T2121del1 | del | acC | ac- | 14 | 4 | 0.285714 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del1 | T2121del1 | del | ACc | G-c | 14 | 2 | 0.142857 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del1 | T2121del1 | del | Acc | -cc | 14 | 1 | 0.0714286 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303P | T2121P | nonsyn | Acc | Ccc | 13 | 13 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del2 | T2121del2 | del | ACc | --c | 8 | 4 | 0.5 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303del2 | T2121del2 | del | aCC | a-- | 8 | 4 | 0.5 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303S | T2121S | nonsyn | Acc | Tcc | 7 | 5 | 0.714286 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303S | T2121S | nonsyn | aCc | aGc | 7 | 2 | 0.285714 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303V | T2121V | nonsyn | ACc | GTc | 2 | 2 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303M | T2121M | nonsyn | aCC | aTG | 2 | 2 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303D | T2121D | nonsyn | ACC | GAT | 2 | 1 | 0.5 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303D | T2121D | nonsyn | ACc | GAc | 2 | 1 | 0.5 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303K | T2121K | nonsyn | aCC | aAA | 1 | 1 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303R | T2121R | nonsyn | aCC | aGA | 1 | 1 | 1 | 6626-6628 |
ORF1ab/nsp3 | 1303 | T1303F | T2121F | nonsyn | ACc | TTc | 1 | 1 | 1 | 6626-6628 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 8406 | 8438 | All | 0.001608 |
ORF1ab/nsp3 | 1303 | T1303I | aCC | aTT | 32 | 8438 | All | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4659 | 4794 | All | 0.000891 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 113 | 4794 | All | 0.000022 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acG | 22 | 4794 | All | 0.000004 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4461 | 4468 | P.1 | 0.070279 |
ORF1ab/nsp3 | 1303 | T1303I | aCC | aTT | 7 | 4468 | P.1 | 0.00011 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1207 | 1208 | B.1.1.7 | 0.001081 |
ORF1ab/nsp3 | 1303 | T1303I | aCC | aTT | 1 | 1208 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1088 | 1095 | B.1.1.7 | 0.000974 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 6 | 1095 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acG | 1 | 1095 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 914 | 949 | AY.4 | 0.001423 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acG | 18 | 949 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 17 | 949 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 626 | 626 | B.1.526 | 0.014714 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 354 | 378 | AY.4 | 0.000551 |
ORF1ab/nsp3 | 1303 | T1303I | aCC | aTT | 24 | 378 | AY.4 | 0.000037 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 230 | 230 | All | 0.000044 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 225 | 227 | B.1.1.519 | 0.008935 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 2 | 227 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 211 | 225 | All | 0.00004 |
ORF1ab/nsp3 | 1303 | T1303A | AcC | GcT | 14 | 225 | All | 0.000003 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 189 | 189 | B.1.2 | 0.001664 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 187 | 187 | AV.1 | 0.944444 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 179 | 183 | B.1.617.2 | 0.000674 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acG | 2 | 183 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 2 | 183 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 159 | 159 | B.1.160 | 0.004959 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 141 | 141 | B.1.617.2 | 0.000531 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 113 | 113 | P.1 | 0.00178 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 107 | 107 | AY.120 | 0.003978 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 101 | 101 | B.1.1.7 | 0.00009 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 98 | 99 | All | 0.000019 |
ORF1ab/nsp3 | 1303 | T1303N | aCC | aAT | 1 | 99 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 87 | 87 | AY.43 | 0.000385 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 87 | 87 | P.1.12 | 0.04211 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 86 | 86 | AY.25 | 0.000517 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 85 | 85 | AY.29 | 0.001341 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 80 | 80 | AY.43 | 0.000354 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 80 | 80 | AY.44 | 0.000487 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 71 | 77 | B.1.1 | 0.001288 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 6 | 77 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 74 | 74 | B.1.1.7 | 0.000066 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 59 | 72 | AY.44 | 0.000359 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 12 | 72 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acG | 1 | 72 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 64 | 71 | B.1 | 0.000586 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 7 | 71 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 67 | 67 | AY.25 | 0.000403 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 65 | 65 | B.1.351.2 | 0.019667 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 49 | 64 | B.1.2 | 0.000431 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 15 | 64 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 54 | 54 | P.1.17 | 0.008735 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 52 | 52 | B.1.1 | 0.000943 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 52 | 52 | B.1.351 | 0.001546 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 51 | 51 | AY.9.2 | 0.001873 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 43 | 44 | AY.103 | 0.000267 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 44 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 44 | 44 | B.1 | 0.000403 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 42 | 42 | AY.5 | 0.000867 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 40 | 40 | AY.103 | 0.000248 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 39 | 39 | AY.3 | 0.000388 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 25 | 39 | AY.39 | 0.000618 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 14 | 39 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 38 | 38 | AY.23 | 0.00265 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 37 | 37 | B.1.177.11 | 0.062818 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 26 | 35 | AY.3 | 0.000259 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 9 | 35 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 35 | 35 | B.1.596 | 0.00305 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 31 | 31 | B.1.619 | 0.027003 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 29 | 30 | B.1.177 | 0.000382 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 30 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 28 | 30 | B.1.429 | 0.000659 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 2 | 30 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 29 | 29 | B.1.377 | 0.13242 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 28 | 28 | AY.26 | 0.000793 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 28 | 28 | B.1.160 | 0.000873 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 28 | 28 | B.1.177.52 | 0.049209 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 28 | 28 | B.1.351 | 0.000832 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 27 | 27 | AY.119 | 0.000953 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 24 | 24 | AY.121 | 0.003248 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 24 | 24 | B.1.258.17 | 0.002495 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 22 | 22 | B.1.36 | 0.00321 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 22 | 22 | P.1.1 | 0.006989 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 11 | 18 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 7 | 18 | B.1.243 | 0.000487 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 18 | 18 | B.1.258.17 | 0.001871 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 18 | 18 | P.1.15 | 0.004182 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 17 | 17 | A.2.5.1 | 0.081731 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 17 | 17 | AY.75 | 0.000952 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 16 | 16 | B.1.1.265 | 0.050473 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 16 | 16 | B.1.1.356 | 0.136752 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 16 | 16 | Q.2 | 0.009816 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 16 | 16 | Q.8 | 0.002639 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 15 | 15 | B.1.1.317 | 0.006175 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 15 | 15 | B.1.396 | 0.010586 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 7 | 14 | All | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303del1 | acC | ac- | 4 | 14 | All | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303del1 | ACc | G-c | 2 | 14 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303del1 | Acc | -cc | 1 | 14 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 14 | 14 | B.1.478 | 0.164706 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 14 | 14 | B.1.480 | 0.034826 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 1303 | T1303A | AcC | GcT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 13 | 13 | B.1.177.53 | 0.0311 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 12 | 12 | A.2.5 | 0.005988 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 12 | 12 | AY.5.3 | 0.004049 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 12 | 12 | AY.88 | 0.01061 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 11 | 11 | AY.4.2.1 | 0.001639 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 11 | 11 | B.1.1.147 | 1 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 9 | 11 | B.1.428 | 0.009184 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 2 | 11 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 11 | 11 | B.1.628 | 0.003876 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 10 | 10 | B.1.126 | 0.012755 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 10 | 10 | B.1.162 | 0.050251 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 10 | 10 | B.1.438.1 | 0.001073 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 9 | 9 | B.1.377 | 0.041096 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 9 | 9 | B.1.619.1 | 0.005773 |
ORF1ab/nsp3 | 1303 | T1303del2 | ACc | --c | 4 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303del2 | aCC | a-- | 4 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 8 | 8 | B.1.580 | 0.03252 |
ORF1ab/nsp3 | 1303 | T1303S | Acc | Tcc | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303S | aCc | aGc | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | AY.49 | 0.022364 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | B.1.1.521 | 0.037433 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | B.1.602 | 0.045752 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | AY.53 | 0.001725 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | B.1.177.8 | 0.004515 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 6 | 6 | B.1.206 | 0.004894 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 6 | 6 | B.1.321 | 0.206897 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.56 | 0.008026 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.7 | 0.00098 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.85 | 0.002136 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | AY.93 | 0.001365 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 5 | 5 | C.38 | 0.040323 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.1.174 | 0.013514 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.1.300 | 0.043011 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.1.397 | 0.009009 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.1.41 | 0.025316 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.1.486 | 0.006309 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 4 | 4 | B.1.1.54 | 0.012085 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.237 | 0.0199 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.605 | 0.02381 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | N.9 | 0.02381 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 4 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 4 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 4 | 4 | P.5 | 0.054795 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.36.35 | 0.007812 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 3 | 3 | B.1.9.4 | 0.018405 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 3 | 3 | P.1.10.2 | 0.125 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1303 | T1303D | ACc | GAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303A | AcC | GcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303D | ACC | GAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303N | aCC | aAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303V | ACc | GTc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303M | aCC | aTG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303D | ACC | GAT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303D | ACc | GAc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1303 | T1303V | ACc | GTc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1303 | T1303del2 | ACc | --c | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 1303 | T1303S | Acc | Tcc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.336 | 0.033333 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp3 | 1303 | T1303del1 | acC | ac- | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1303 | T1303del1 | Acc | -cc | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1303 | T1303del1 | ACc | G-c | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303del1 | acC | ac- | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1303 | T1303del1 | acC | ac- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1303 | T1303F | ACc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303K | aCC | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303R | aCC | aGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1303 | T1303del2 | ACc | --c | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1303 | T1303S | aCc | aGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1303 | T1303del2 | aCC | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1303 | T1303R | aCC | aGA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1303 | T1303del2 | aCC | a-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1303 | T1303del2 | ACc | --c | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1303 | T1303del1 | ACc | G-c | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303S | aCc | aGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1303 | T1303del1 | aCc | a-c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1303 | T1303S | Acc | Tcc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.396 | 0.045455 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1303 | T1303F | ACc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303del2 | aCC | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1303 | T1303del1 | acC | ac- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp3 | 1303 | T1303S | Acc | Tcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1303 | T1303M | aCC | aTG | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acA | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1303 | T1303S | Acc | Tcc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1303 | T1303M | aCC | aTG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.360 | 0.012658 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1303 | T1303N | aCc | aAc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 1303 | T1303del2 | aCC | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1303 | T1303P | Acc | Ccc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | C.19 | 0.027027 |
ORF1ab/nsp3 | 1303 | T1303K | aCC | aAA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp3 | 1303 | T1303T | acC | acT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1303 | T1303A | Acc | Gcc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1303 | T1303del | ACC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1303 | T1303I | aCc | aTc | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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