CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1298 | V1298V | V2116V | syn | gtA | gtG | 115464 | 115442 | 0.999809 | 6611-6613 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 115442 | 115464 | All | 0.02208 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 62712 | 62716 | P.1 | 0.987964 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 20851 | 20852 | P.1.14 | 0.996702 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 6107 | 6107 | P.1.17 | 0.987868 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4244 | 4246 | P.1.15 | 0.986059 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3676 | 3676 | P.1.10 | 0.990569 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3097 | 3100 | P.1.7 | 0.988825 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2996 | 2996 | P.1.1 | 0.951715 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2633 | 2633 | P.1.16 | 0.985036 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1922 | 1922 | P.1.12 | 0.9303 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1142 | 1142 | P.1.17.1 | 0.999125 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1101 | 1101 | P.1.13 | 0.989218 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1023 | 1023 | P.1.4 | 0.999023 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 861 | 861 | P.1.2 | 0.995376 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 509 | 509 | P.1.6 | 0.990272 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 293 | 295 | AY.4 | 0.000456 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 207 | 207 | P.1.9 | 0.995192 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 180 | 180 | B.1.429 | 0.004235 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 173 | 173 | B.1 | 0.001585 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 173 | 173 | B.1.1 | 0.003138 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 121 | 121 | P.1.10.1 | 0.98374 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 115 | 115 | C.36 | 0.104736 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 99 | 100 | B.1.1.7 | 0.000089 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 93 | 93 | B.1.1.28 | 0.028945 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 81 | 81 | AY.25 | 0.000487 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 45 | 46 | B.1.617.2 | 0.000169 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 43 | 43 | AY.44 | 0.000262 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 33 | 33 | B.1.1.528 | 0.158654 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 33 | 33 | B.1.177.86 | 0.006054 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 33 | 33 | C.37 | 0.00383 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 30 | 30 | AY.46.6 | 0.002166 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 26 | 26 | AY.23 | 0.001813 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 23 | 23 | AY.75 | 0.001289 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 8 | 8 | B.1.349 | 0.005718 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | B.1.280 | 0.028571 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | C.37.1 | 0.010471 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.459 | 0.030769 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.327 | 0.1 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1298 | V1298V | gtA | gtG | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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