CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1297

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31297R1297IR2115InonsynaGaaTa1308130816608-6610
ORF1ab/nsp31297R1297RR2115RsynagAagG4544360.9603526608-6610
ORF1ab/nsp31297R1297RR2115RsynAgaCga454140.0308376608-6610
ORF1ab/nsp31297R1297RR2115RsynAgACgT45430.006607936608-6610
ORF1ab/nsp31297R1297RR2115RsynAgACgC45410.002202646608-6610
ORF1ab/nsp31297R1297SR2115SnonsynagAagT3672330.6348776608-6610
ORF1ab/nsp31297R1297SR2115SnonsynagAagC3671340.3651236608-6610
ORF1ab/nsp31297R1297delR2115deldelAGA---34234216608-6610
ORF1ab/nsp31297R1297GR2115GnonsynAgaGga2072060.9951696608-6610
ORF1ab/nsp31297R1297GR2115GnonsynAgAGgC20710.004830926608-6610
ORF1ab/nsp31297R1297KR2115KnonsynaGaaAa11911916608-6610
ORF1ab/nsp31297R1297TR2115TnonsynaGaaCa818116608-6610
ORF1ab/nsp31297R1297del1R2115del1delagAag-950.5555566608-6610
ORF1ab/nsp31297R1297del1R2115del1delAga-ga940.4444446608-6610
ORF1ab/nsp31297R1297XR2115XnonsynAgaTga7716608-6610
ORF1ab/nsp31297R1297LR2115LnonsynAGaTTa430.756608-6610
ORF1ab/nsp31297R1297LR2115LnonsynAGaCTa410.256608-6610
ORF1ab/nsp31297R1297NR2115NnonsynaGAaAT3316608-6610
ORF1ab/nsp31297R1297QR2115QnonsynAGaCAa2216608-6610
ORF1ab/nsp31297R1297del2R2115del2delAGa--a2216608-6610
ORF1ab/nsp31297R1297HR2115HnonsynAGACAT1116608-6610
ORF1ab/nsp31297R1297VR2115VnonsynAGaGTa1116608-6610
ORF1ab/nsp31297R1297ER2115EnonsynAGaGAa1116608-6610

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31297R1297IaGaaTa13081308All0.00025
ORF1ab/nsp31297R1297IaGaaTa620620B.1.1.5230.96875
ORF1ab/nsp31297R1297RagAagG436454All0.000083
ORF1ab/nsp31297R1297RAgaCga14454All0.000003
ORF1ab/nsp31297R1297RAgACgT3454All0.000001
ORF1ab/nsp31297R1297RAgACgC1454All0
ORF1ab/nsp31297R1297SagAagT233367All0.000045
ORF1ab/nsp31297R1297SagAagC134367All0.000026
ORF1ab/nsp31297R1297delAGA---342342All0.000065
ORF1ab/nsp31297R1297GAgaGga206207All0.000039
ORF1ab/nsp31297R1297GAgAGgC1207All0
ORF1ab/nsp31297R1297RagAagG202202AY.30.002009
ORF1ab/nsp31297R1297delAGA---166166B.1.1.70.000149
ORF1ab/nsp31297R1297SagAagT134134A0.051858
ORF1ab/nsp31297R1297IaGaaTa131131B.1.1.70.000117
ORF1ab/nsp31297R1297KaGaaAa119119All0.000023
ORF1ab/nsp31297R1297IaGaaTa117117C.380.943548
ORF1ab/nsp31297R1297TaGaaCa8181All0.000015
ORF1ab/nsp31297R1297TaGaaCa6161B.1.1.500.041412
ORF1ab/nsp31297R1297IaGaaTa5959B.1.617.20.000222
ORF1ab/nsp31297R1297delAGA---5353AY.40.000082
ORF1ab/nsp31297R1297SagAagC3049B.1.1.70.000027
ORF1ab/nsp31297R1297SagAagT1949B.1.1.70.000017
ORF1ab/nsp31297R1297IaGaaTa4848B.1.6040.827586
ORF1ab/nsp31297R1297RagAagG4646AY.750.002577
ORF1ab/nsp31297R1297SagAagC4444AY.440.000268
ORF1ab/nsp31297R1297RagAagG3838AY.4.20.000824
ORF1ab/nsp31297R1297IaGaaTa3737AY.40.000058
ORF1ab/nsp31297R1297RagAagG3335B.1.1.70.00003
ORF1ab/nsp31297R1297RAgACgC135B.1.1.70.000001
ORF1ab/nsp31297R1297RAgaCga135B.1.1.70.000001
ORF1ab/nsp31297R1297KaGaaAa3232B.1.20.000282
ORF1ab/nsp31297R1297IaGaaTa3131A.23.10.021831
ORF1ab/nsp31297R1297GAgaGga3131AY.440.000189
ORF1ab/nsp31297R1297SagAagT2729B.10.000247
ORF1ab/nsp31297R1297SagAagC229B.10.000018
ORF1ab/nsp31297R1297SagAagT2626B.1.36.10.029647
ORF1ab/nsp31297R1297GAgaGga2525AY.40.000039
ORF1ab/nsp31297R1297KaGaaAa2525B.1.1600.00078
ORF1ab/nsp31297R1297GAgaGga2525B.1.4620.181159
ORF1ab/nsp31297R1297IaGaaTa2323AY.4.50.002472
ORF1ab/nsp31297R1297IaGaaTa2222B.1.20.000194
ORF1ab/nsp31297R1297IaGaaTa1919B.1.10.000345
ORF1ab/nsp31297R1297RagAagG1919B.1.617.20.000072
ORF1ab/nsp31297R1297GAgaGga1919C.370.002205
ORF1ab/nsp31297R1297SagAagC1718AY.40.000026
ORF1ab/nsp31297R1297SagAagT118AY.40.000002
ORF1ab/nsp31297R1297GAgaGga1818Q.20.011043
ORF1ab/nsp31297R1297GAgaGga1717B.10.000156
ORF1ab/nsp31297R1297IaGaaTa1717B.10.000156
ORF1ab/nsp31297R1297GAgaGga1717B.1.1.70.000015
ORF1ab/nsp31297R1297IaGaaTa1616AY.1060.005358
ORF1ab/nsp31297R1297KaGaaAa1616AY.30.000159
ORF1ab/nsp31297R1297RagAagG1616B.1.20.000141
ORF1ab/nsp31297R1297delAGA---1515B.1.1770.000198
ORF1ab/nsp31297R1297RagAagG1313AY.330.000868
ORF1ab/nsp31297R1297RAgaCga611AY.1170.000507
ORF1ab/nsp31297R1297RagAagG511AY.1170.000423
ORF1ab/nsp31297R1297RagAagG1010AY.250.00006
ORF1ab/nsp31297R1297del1agAag-59All0.000001
ORF1ab/nsp31297R1297del1Aga-ga49All0.000001
ORF1ab/nsp31297R1297delAGA---99AY.250.000054
ORF1ab/nsp31297R1297IaGaaTa99B.1.1600.000281
ORF1ab/nsp31297R1297delAGA---99B.1.617.20.000034
ORF1ab/nsp31297R1297delAGA---88AY.430.000035
ORF1ab/nsp31297R1297IaGaaTa88B.1.5250.000905
ORF1ab/nsp31297R1297XAgaTga77All0.000001
ORF1ab/nsp31297R1297IaGaaTa77AY.30.00007
ORF1ab/nsp31297R1297RagAagG77AY.40.000011
ORF1ab/nsp31297R1297delAGA---77AY.4.50.000752
ORF1ab/nsp31297R1297IaGaaTa77AY.430.000031
ORF1ab/nsp31297R1297TaGaaCa77B.1.1.70.000006
ORF1ab/nsp31297R1297IaGaaTa77B.1.1310.061404
ORF1ab/nsp31297R1297GAgaGga77B.1.4270.000353
ORF1ab/nsp31297R1297KaGaaAa77B.1.6360.04698
ORF1ab/nsp31297R1297IaGaaTa66AY.1020.000159
ORF1ab/nsp31297R1297KaGaaAa66AY.360.000889
ORF1ab/nsp31297R1297KaGaaAa66AY.40.000009
ORF1ab/nsp31297R1297IaGaaTa66AY.9.20.00022
ORF1ab/nsp31297R1297IaGaaTa66B.1.1770.000079
ORF1ab/nsp31297R1297RagAagG66P.10.000095
ORF1ab/nsp31297R1297KaGaaAa550.277778
ORF1ab/nsp31297R1297IaGaaTa55AY.1030.000031
ORF1ab/nsp31297R1297GAgaGga55AY.1030.000031
ORF1ab/nsp31297R1297GAgaGga55AY.390.000124
ORF1ab/nsp31297R1297IaGaaTa55AY.90.000338
ORF1ab/nsp31297R1297IaGaaTa55B.1.1.5190.000199
ORF1ab/nsp31297R1297SagAagC55B.1.617.20.000019
ORF1ab/nsp31297R1297KaGaaAa55P.10.000079
ORF1ab/nsp31297R1297LAGaTTa34All0.000001
ORF1ab/nsp31297R1297LAGaCTa14All0
ORF1ab/nsp31297R1297SagAagT44AY.1030.000025
ORF1ab/nsp31297R1297IaGaaTa44AY.80.002424
ORF1ab/nsp31297R1297IaGaaTa44AY.99.20.000369
ORF1ab/nsp31297R1297delAGA---44B.1.10.000073
ORF1ab/nsp31297R1297SagAagT34B.1.10.000054
ORF1ab/nsp31297R1297SagAagC14B.1.10.000018
ORF1ab/nsp31297R1297KaGaaAa44B.1.1.70.000004
ORF1ab/nsp31297R1297SagAagC44B.1.177.120.000607
ORF1ab/nsp31297R1297delAGA---44B.1.5970.018519
ORF1ab/nsp31297R1297IaGaaTa44C.140.017316
ORF1ab/nsp31297R1297NaGAaAT33All0.000001
ORF1ab/nsp31297R1297RagAagG33AY.1030.000019
ORF1ab/nsp31297R1297RagAagG33AY.1160.00086
ORF1ab/nsp31297R1297SagAagT23AY.30.00002
ORF1ab/nsp31297R1297SagAagC13AY.30.00001
ORF1ab/nsp31297R1297RagAagG33AY.440.000018
ORF1ab/nsp31297R1297IaGaaTa33AY.470.000093
ORF1ab/nsp31297R1297delAGA---33B.10.000027
ORF1ab/nsp31297R1297SagAagT33B.1.1770.00004
ORF1ab/nsp31297R1297RagAagG33B.1.2430.000209
ORF1ab/nsp31297R1297RagAagG33B.1.5260.000071
ORF1ab/nsp31297R1297GAgaGga33B.1.617.20.000011
ORF1ab/nsp31297R1297delAGA---220.111111
ORF1ab/nsp31297R1297TaGaaCa220.111111
ORF1ab/nsp31297R1297RAgaCga120.055556
ORF1ab/nsp31297R1297RAgACgT120.055556
ORF1ab/nsp31297R1297del2AGa--a22All0
ORF1ab/nsp31297R1297QAGaCAa22All0
ORF1ab/nsp31297R1297IaGaaTa22AU.20.004843
ORF1ab/nsp31297R1297IaGaaTa22AY.10.000791
ORF1ab/nsp31297R1297GAgaGga22AY.1020.000053
ORF1ab/nsp31297R1297GAgaGga22AY.1190.000071
ORF1ab/nsp31297R1297IaGaaTa22AY.1200.000074
ORF1ab/nsp31297R1297RagAagG22AY.140.000176
ORF1ab/nsp31297R1297delAGA---22AY.140.000176
ORF1ab/nsp31297R1297GAgaGga22AY.230.000139
ORF1ab/nsp31297R1297IaGaaTa22AY.290.000032
ORF1ab/nsp31297R1297RagAagG12AY.290.000016
ORF1ab/nsp31297R1297RAgaCga12AY.290.000016
ORF1ab/nsp31297R1297delAGA---22AY.390.000049
ORF1ab/nsp31297R1297SagAagC22AY.430.000009
ORF1ab/nsp31297R1297GAgaGga22AY.430.000009
ORF1ab/nsp31297R1297RAgACgT12AY.430.000004
ORF1ab/nsp31297R1297RAgaCga12AY.430.000004
ORF1ab/nsp31297R1297IaGaaTa22AY.440.000012
ORF1ab/nsp31297R1297delAGA---22AY.50.000041
ORF1ab/nsp31297R1297IaGaaTa22AY.580.001815
ORF1ab/nsp31297R1297delAGA---22AY.75.10.000361
ORF1ab/nsp31297R1297IaGaaTa22AY.98.10.000097
ORF1ab/nsp31297R1297SagAagC22AY.99.20.000184
ORF1ab/nsp31297R1297TaGaaCa22B.10.000018
ORF1ab/nsp31297R1297TaGaaCa22B.1.10.000036
ORF1ab/nsp31297R1297KaGaaAa22B.1.10.000036
ORF1ab/nsp31297R1297RagAagG12B.1.10.000018
ORF1ab/nsp31297R1297RAgaCga12B.1.10.000018
ORF1ab/nsp31297R1297IaGaaTa22B.1.1.2940.002532
ORF1ab/nsp31297R1297SagAagC22B.1.1.3820.071429
ORF1ab/nsp31297R1297IaGaaTa22B.1.1.390.001019
ORF1ab/nsp31297R1297del1Aga-ga22B.1.1.70.000002
ORF1ab/nsp31297R1297IaGaaTa22B.1.160.160.001859
ORF1ab/nsp31297R1297IaGaaTa22B.1.160.200.017857
ORF1ab/nsp31297R1297RagAagG22B.1.1770.000026
ORF1ab/nsp31297R1297IaGaaTa22B.1.177.230.006472
ORF1ab/nsp31297R1297delAGA---22B.1.177.40.000422
ORF1ab/nsp31297R1297IaGaaTa22B.1.177.440.001038
ORF1ab/nsp31297R1297delAGA---22B.1.177.70.00033
ORF1ab/nsp31297R1297delAGA---22B.1.177.870.001456
ORF1ab/nsp31297R1297TaGaaCa22B.1.20.000018
ORF1ab/nsp31297R1297SagAagC12B.1.20.000009
ORF1ab/nsp31297R1297SagAagT12B.1.20.000009
ORF1ab/nsp31297R1297IaGaaTa22B.1.2210.000142
ORF1ab/nsp31297R1297SagAagT22B.1.2210.000142
ORF1ab/nsp31297R1297IaGaaTa22B.1.2360.004107
ORF1ab/nsp31297R1297SagAagC22B.1.2410.001623
ORF1ab/nsp31297R1297delAGA---22B.1.2430.000139
ORF1ab/nsp31297R1297IaGaaTa22B.1.3510.000059
ORF1ab/nsp31297R1297delAGA---22B.1.36.170.000988
ORF1ab/nsp31297R1297RagAagG22B.1.4270.000101
ORF1ab/nsp31297R1297GAgaGga22B.1.4290.000047
ORF1ab/nsp31297R1297GAgaGga22B.1.466.20.000782
ORF1ab/nsp31297R1297XAgaTga22B.1.617.20.000008
ORF1ab/nsp31297R1297SagAagC22B.1.6210.000177
ORF1ab/nsp31297R1297IaGaaTa22C.36.3.10.005435
ORF1ab/nsp31297R1297IaGaaTa22D.20.00015
ORF1ab/nsp31297R1297IaGaaTa22P.10.000032
ORF1ab/nsp31297R1297SagAagC22P.10.000032
ORF1ab/nsp31297R1297GAgaGga12P.10.000016
ORF1ab/nsp31297R1297GAgAGgC12P.10.000016
ORF1ab/nsp31297R1297IaGaaTa22P.1.70.000639
ORF1ab/nsp31297R1297GAgaGga22P.20.000373
ORF1ab/nsp31297R1297NaGAaAT110.055556
ORF1ab/nsp31297R1297HAGACAT110.055556
ORF1ab/nsp31297R1297QAGaCAa110.055556
ORF1ab/nsp31297R1297SagAagT110.055556
ORF1ab/nsp31297R1297IaGaaTa11A0.000387
ORF1ab/nsp31297R1297TaGaaCa11A.10.000282
ORF1ab/nsp31297R1297IaGaaTa11A.2.5.30.010309
ORF1ab/nsp31297R1297RAgaCga11A.50.001923
ORF1ab/nsp31297R1297delAGA---11AD.20.000219
ORF1ab/nsp31297R1297VAGaGTa11All0
ORF1ab/nsp31297R1297EAGaGAa11All0
ORF1ab/nsp31297R1297HAGACAT11All0
ORF1ab/nsp31297R1297RagAagG11AU.20.002421
ORF1ab/nsp31297R1297RAgaCga11AY.1000.000046
ORF1ab/nsp31297R1297SagAagC11AY.1000.000046
ORF1ab/nsp31297R1297RagAagG11AY.1020.000027
ORF1ab/nsp31297R1297del1agAag-11AY.1030.000006
ORF1ab/nsp31297R1297IaGaaTa11AY.1100.000113
ORF1ab/nsp31297R1297RagAagG11AY.1130.000142
ORF1ab/nsp31297R1297IaGaaTa11AY.1140.000231
ORF1ab/nsp31297R1297GAgaGga11AY.1150.005208
ORF1ab/nsp31297R1297GAgaGga11AY.1160.000287
ORF1ab/nsp31297R1297VAGaGTa11AY.1190.000035
ORF1ab/nsp31297R1297SagAagC11AY.1190.000035
ORF1ab/nsp31297R1297RagAagG11AY.1190.000035
ORF1ab/nsp31297R1297SagAagC11AY.120.000316
ORF1ab/nsp31297R1297delAGA---11AY.120.000316
ORF1ab/nsp31297R1297RagAagG11AY.1200.000037
ORF1ab/nsp31297R1297delAGA---11AY.1200.000037
ORF1ab/nsp31297R1297IaGaaTa11AY.140.000088
ORF1ab/nsp31297R1297GAgaGga11AY.160.00038
ORF1ab/nsp31297R1297IaGaaTa11AY.170.008197
ORF1ab/nsp31297R1297IaGaaTa11AY.190.00114
ORF1ab/nsp31297R1297delAGA---11AY.190.00114
ORF1ab/nsp31297R1297GAgaGga11AY.200.000039
ORF1ab/nsp31297R1297SagAagC11AY.200.000039
ORF1ab/nsp31297R1297SagAagC11AY.240.000431
ORF1ab/nsp31297R1297GAgaGga11AY.250.000006
ORF1ab/nsp31297R1297KaGaaAa11AY.250.000006
ORF1ab/nsp31297R1297GAgaGga11AY.30.00001
ORF1ab/nsp31297R1297SagAagC11AY.300.000396
ORF1ab/nsp31297R1297KaGaaAa11AY.330.000067
ORF1ab/nsp31297R1297IaGaaTa11AY.370.000316
ORF1ab/nsp31297R1297KaGaaAa11AY.390.000025
ORF1ab/nsp31297R1297RagAagG11AY.390.000025
ORF1ab/nsp31297R1297SagAagC11AY.390.000025
ORF1ab/nsp31297R1297IaGaaTa11AY.390.000025
ORF1ab/nsp31297R1297del1Aga-ga11AY.40.000002
ORF1ab/nsp31297R1297SagAagT11AY.4.20.000022
ORF1ab/nsp31297R1297del1Aga-ga11AY.430.000004
ORF1ab/nsp31297R1297KaGaaAa11AY.440.000006
ORF1ab/nsp31297R1297del1agAag-11AY.440.000006
ORF1ab/nsp31297R1297RagAagG11AY.450.000122
ORF1ab/nsp31297R1297SagAagC11AY.450.000122
ORF1ab/nsp31297R1297GAgaGga11AY.460.000104
ORF1ab/nsp31297R1297IaGaaTa11AY.460.000104
ORF1ab/nsp31297R1297RagAagG11AY.46.10.001027
ORF1ab/nsp31297R1297delAGA---11AY.46.20.000635
ORF1ab/nsp31297R1297GAgaGga11AY.470.000031
ORF1ab/nsp31297R1297EAGaGAa11AY.480.000465
ORF1ab/nsp31297R1297RagAagG11AY.50.000021
ORF1ab/nsp31297R1297GAgaGga11AY.510.000909
ORF1ab/nsp31297R1297GAgaGga11AY.540.000095
ORF1ab/nsp31297R1297delAGA---11AY.60.000041
ORF1ab/nsp31297R1297delAGA---11AY.600.000938
ORF1ab/nsp31297R1297delAGA---11AY.660.00107
ORF1ab/nsp31297R1297SagAagC11AY.670.000464
ORF1ab/nsp31297R1297SagAagT11AY.700.000209
ORF1ab/nsp31297R1297IaGaaTa11AY.750.000056
ORF1ab/nsp31297R1297KaGaaAa11AY.75.10.00018
ORF1ab/nsp31297R1297delAGA---11AY.840.000437
ORF1ab/nsp31297R1297RagAagG11AY.840.000437
ORF1ab/nsp31297R1297SagAagC11AY.850.000427
ORF1ab/nsp31297R1297IaGaaTa11AY.870.000833
ORF1ab/nsp31297R1297delAGA---11AY.90.000068
ORF1ab/nsp31297R1297del2AGa--a11AY.90.000068
ORF1ab/nsp31297R1297KaGaaAa11AY.9.10.000084
ORF1ab/nsp31297R1297RagAagG11AY.950.000761
ORF1ab/nsp31297R1297RAgaCga11AY.980.000079
ORF1ab/nsp31297R1297delAGA---11AY.990.001049
ORF1ab/nsp31297R1297RagAagG11AZ.20.000821
ORF1ab/nsp31297R1297del1agAag-11B.10.000009
ORF1ab/nsp31297R1297NaGAaAT11B.10.000009
ORF1ab/nsp31297R1297RAgACgT11B.10.000009
ORF1ab/nsp31297R1297XAgaTga11B.1.10.000018
ORF1ab/nsp31297R1297RagAagG11B.1.1.10.000327
ORF1ab/nsp31297R1297SagAagC11B.1.1.160.055556
ORF1ab/nsp31297R1297IaGaaTa11B.1.1.1610.003534
ORF1ab/nsp31297R1297IaGaaTa11B.1.1.1760.000439
ORF1ab/nsp31297R1297LAGaTTa11B.1.1.2160.00089
ORF1ab/nsp31297R1297delAGA---11B.1.1.2360.006897
ORF1ab/nsp31297R1297RagAagG11B.1.1.280.000311
ORF1ab/nsp31297R1297del1agAag-11B.1.1.3010.001179
ORF1ab/nsp31297R1297QAGaCAa11B.1.1.3060.000438
ORF1ab/nsp31297R1297delAGA---11B.1.1.3110.000358
ORF1ab/nsp31297R1297delAGA---11B.1.1.3120.001912
ORF1ab/nsp31297R1297delAGA---11B.1.1.3480.000796
ORF1ab/nsp31297R1297KaGaaAa11B.1.1.3540.004386
ORF1ab/nsp31297R1297delAGA---11B.1.1.370.000193
ORF1ab/nsp31297R1297IaGaaTa11B.1.1.3980.003226
ORF1ab/nsp31297R1297delAGA---11B.1.1.4090.002833
ORF1ab/nsp31297R1297TaGaaCa11B.1.1.4200.001006
ORF1ab/nsp31297R1297delAGA---11B.1.1.440.00241
ORF1ab/nsp31297R1297del2AGa--a11B.1.1.70.000001
ORF1ab/nsp31297R1297XAgaTga11B.1.1.70.000001
ORF1ab/nsp31297R1297GAgaGga11B.1.1.700.000341
ORF1ab/nsp31297R1297IaGaaTa11B.1.1.700.000341
ORF1ab/nsp31297R1297TaGaaCa11B.1.110.30.000718
ORF1ab/nsp31297R1297IaGaaTa11B.1.1110.001175
ORF1ab/nsp31297R1297GAgaGga11B.1.1240.007812
ORF1ab/nsp31297R1297IaGaaTa11B.1.1460.004237
ORF1ab/nsp31297R1297SagAagT11B.1.1570.002985
ORF1ab/nsp31297R1297delAGA---11B.1.1600.000031
ORF1ab/nsp31297R1297IaGaaTa11B.1.160.290.004219
ORF1ab/nsp31297R1297IaGaaTa11B.1.160.310.008065
ORF1ab/nsp31297R1297SagAagC11B.1.1730.026316
ORF1ab/nsp31297R1297TaGaaCa11B.1.1770.000013
ORF1ab/nsp31297R1297delAGA---11B.1.177.110.001698
ORF1ab/nsp31297R1297delAGA---11B.1.177.150.000631
ORF1ab/nsp31297R1297delAGA---11B.1.177.170.000821
ORF1ab/nsp31297R1297SagAagT11B.1.177.210.000076
ORF1ab/nsp31297R1297IaGaaTa11B.1.177.280.007407
ORF1ab/nsp31297R1297IaGaaTa11B.1.177.310.011494
ORF1ab/nsp31297R1297IaGaaTa11B.1.177.430.001477
ORF1ab/nsp31297R1297XAgaTga11B.1.177.440.000519
ORF1ab/nsp31297R1297delAGA---11B.1.177.510.004566
ORF1ab/nsp31297R1297delAGA---11B.1.177.560.000668
ORF1ab/nsp31297R1297delAGA---11B.1.177.570.000281
ORF1ab/nsp31297R1297IaGaaTa11B.1.177.570.000281
ORF1ab/nsp31297R1297delAGA---11B.1.177.580.001332
ORF1ab/nsp31297R1297delAGA---11B.1.177.60.000977
ORF1ab/nsp31297R1297delAGA---11B.1.177.600.000218
ORF1ab/nsp31297R1297IaGaaTa11B.1.177.70.000165
ORF1ab/nsp31297R1297delAGA---11B.1.177.90.001332
ORF1ab/nsp31297R1297GAgaGga11B.1.1950.005025
ORF1ab/nsp31297R1297GAgaGga11B.1.20.000009
ORF1ab/nsp31297R1297XAgaTga11B.1.20.000009
ORF1ab/nsp31297R1297SagAagT11B.1.2180.005155
ORF1ab/nsp31297R1297delAGA---11B.1.2210.000071
ORF1ab/nsp31297R1297TaGaaCa11B.1.2430.00007
ORF1ab/nsp31297R1297XAgaTga11B.1.2580.000067
ORF1ab/nsp31297R1297SagAagC11B.1.2580.000067
ORF1ab/nsp31297R1297delAGA---11B.1.2580.000067
ORF1ab/nsp31297R1297IaGaaTa11B.1.2580.000067
ORF1ab/nsp31297R1297delAGA---11B.1.258.100.011364
ORF1ab/nsp31297R1297delAGA---11B.1.258.110.000396
ORF1ab/nsp31297R1297SagAagC11B.1.3510.00003
ORF1ab/nsp31297R1297GAgaGga11B.1.360.000146
ORF1ab/nsp31297R1297LAGaTTa11B.1.360.000146
ORF1ab/nsp31297R1297IaGaaTa11B.1.36.10.00114
ORF1ab/nsp31297R1297delAGA---11B.1.36.180.00042
ORF1ab/nsp31297R1297SagAagT11B.1.36.290.000517
ORF1ab/nsp31297R1297IaGaaTa11B.1.36.350.002604
ORF1ab/nsp31297R1297LAGaCTa11B.1.36.80.001
ORF1ab/nsp31297R1297SagAagT11B.1.3980.002976
ORF1ab/nsp31297R1297delAGA---11B.1.4090.000781
ORF1ab/nsp31297R1297IaGaaTa11B.1.4560.003268
ORF1ab/nsp31297R1297IaGaaTa11B.1.4590.004082
ORF1ab/nsp31297R1297SagAagT11B.1.4590.004082
ORF1ab/nsp31297R1297IaGaaTa11B.1.466.20.000391
ORF1ab/nsp31297R1297SagAagC11B.1.4700.001404
ORF1ab/nsp31297R1297KaGaaAa11B.1.5260.000024
ORF1ab/nsp31297R1297IaGaaTa11B.1.5260.000024
ORF1ab/nsp31297R1297SagAagC11B.1.5460.003704
ORF1ab/nsp31297R1297SagAagC11B.1.5510.00129
ORF1ab/nsp31297R1297KaGaaAa11B.1.5610.000397
ORF1ab/nsp31297R1297IaGaaTa11B.1.5640.000426
ORF1ab/nsp31297R1297IaGaaTa11B.1.5680.001111
ORF1ab/nsp31297R1297IaGaaTa11B.1.5770.000687
ORF1ab/nsp31297R1297SagAagT11B.1.5950.000261
ORF1ab/nsp31297R1297KaGaaAa11B.1.5950.000261
ORF1ab/nsp31297R1297RagAagG11B.1.5950.000261
ORF1ab/nsp31297R1297NaGAaAT11B.1.5950.000261
ORF1ab/nsp31297R1297IaGaaTa11B.1.5960.000087
ORF1ab/nsp31297R1297IaGaaTa11B.1.5990.00365
ORF1ab/nsp31297R1297del1agAag-11B.1.617.20.000004
ORF1ab/nsp31297R1297delAGA---11B.1.617.30.002985
ORF1ab/nsp31297R1297delAGA---11B.1.6210.000089
ORF1ab/nsp31297R1297RagAagG11B.1.6210.000089
ORF1ab/nsp31297R1297IaGaaTa11B.1.6210.000089
ORF1ab/nsp31297R1297delAGA---11B.1.6300.005236
ORF1ab/nsp31297R1297IaGaaTa11B.1.6360.006711
ORF1ab/nsp31297R1297IaGaaTa11B.1.6370.000073
ORF1ab/nsp31297R1297delAGA---11B.340.013699
ORF1ab/nsp31297R1297KaGaaAa11B.400.000364
ORF1ab/nsp31297R1297GAgaGga11B.60.00091
ORF1ab/nsp31297R1297LAGaTTa11C.350.000774
ORF1ab/nsp31297R1297IaGaaTa11C.370.000116
ORF1ab/nsp31297R1297GAgaGga11C.37.10.002618
ORF1ab/nsp31297R1297RagAagG11N.60.007092
ORF1ab/nsp31297R1297delAGA---11P.10.000016
ORF1ab/nsp31297R1297SagAagT11P.1.140.000048
ORF1ab/nsp31297R1297RagAagG11P.1.140.000048
ORF1ab/nsp31297R1297delAGA---11P.1.150.000232
ORF1ab/nsp31297R1297IaGaaTa11P.20.000187
ORF1ab/nsp31297R1297delAGA---11Q.10.000126
ORF1ab/nsp31297R1297delAGA---11Q.40.000455
ORF1ab/nsp31297R1297GAgaGga11Q.80.000165
ORF1ab/nsp31297R1297GAgaGga11R.10.00009
ORF1ab/nsp31297R1297delAGA---11U.30.003861