CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1288 & Codon = aTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31288T1288IT2106InonsynaCtaTt493349290.9991896581-6583

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31288T1288IaCtaTt49294933All0.000943
ORF1ab/nsp31288T1288IaCtaTt11581158AY.40.001802
ORF1ab/nsp31288T1288IaCtaTt874874B.1.1.70.000782
ORF1ab/nsp31288T1288IaCtaTt312312B.1.2580.020763
ORF1ab/nsp31288T1288IaCtaTt213213B.1.20.001876
ORF1ab/nsp31288T1288IaCtaTt194194AY.4.2.10.028903
ORF1ab/nsp31288T1288IaCtaTt188188AY.1030.001167
ORF1ab/nsp31288T1288IaCtaTt136136B.1.617.20.000512
ORF1ab/nsp31288T1288IaCtaTt124124P.10.001953
ORF1ab/nsp31288T1288IaCtaTt117117AY.430.000518
ORF1ab/nsp31288T1288IaCtaTt115115AY.440.0007
ORF1ab/nsp31288T1288IaCtaTt9191AY.750.005098
ORF1ab/nsp31288T1288IaCtaTt8585B.1.1.1340.965909
ORF1ab/nsp31288T1288IaCtaTt8585B.1.3770.388128
ORF1ab/nsp31288T1288IaCtaTt6363B.1.1770.00083
ORF1ab/nsp31288T1288IaCtaTt6363B.1.2210.004475
ORF1ab/nsp31288T1288IaCtaTt6363B.1.3690.017969
ORF1ab/nsp31288T1288IaCtaTt6060AY.1020.001591
ORF1ab/nsp31288T1288IaCtaTt5555AY.270.00356
ORF1ab/nsp31288T1288IaCtaTt5050B.1.1.5190.001986
ORF1ab/nsp31288T1288IaCtaTt4848AY.30.000477
ORF1ab/nsp31288T1288IaCtaTt4747B.1.160.210.959184
ORF1ab/nsp31288T1288IaCtaTt4546B.10.000412
ORF1ab/nsp31288T1288IaCtaTt3232AY.4.50.00344
ORF1ab/nsp31288T1288IaCtaTt3232P.1.10.010165
ORF1ab/nsp31288T1288IaCtaTt2828AY.250.000168
ORF1ab/nsp31288T1288IaCtaTt2828B.1.10.000508
ORF1ab/nsp31288T1288IaCtaTt2626AY.200.00101
ORF1ab/nsp31288T1288IaCtaTt2020B.1.110.30.014368
ORF1ab/nsp31288T1288IaCtaTt2020B.1.2340.002639
ORF1ab/nsp31288T1288IaCtaTt2020B.1.3240.032103
ORF1ab/nsp31288T1288IaCtaTt2020B.1.5260.00047
ORF1ab/nsp31288T1288IaCtaTt1717AY.470.000529
ORF1ab/nsp31288T1288IaCtaTt1616B.1.4290.000376
ORF1ab/nsp31288T1288IaCtaTt1515AY.4.20.000325
ORF1ab/nsp31288T1288IaCtaTt1414AY.390.000346
ORF1ab/nsp31288T1288IaCtaTt1414B.1.6210.001239
ORF1ab/nsp31288T1288IaCtaTt1313AY.260.000368
ORF1ab/nsp31288T1288IaCtaTt1212AY.39.10.000475
ORF1ab/nsp31288T1288IaCtaTt1212B.1.4270.000606
ORF1ab/nsp31288T1288IaCtaTt1212N.40.051064
ORF1ab/nsp31288T1288IaCtaTt1111B.1.177.750.011446
ORF1ab/nsp31288T1288IaCtaTt1010AY.1180.000626
ORF1ab/nsp31288T1288IaCtaTt1010B.1.1600.000312
ORF1ab/nsp31288T1288IaCtaTt1010B.1.3510.000297
ORF1ab/nsp31288T1288IaCtaTt1010B.1.5770.006873
ORF1ab/nsp31288T1288IaCtaTt1010B.1.6280.003524
ORF1ab/nsp31288T1288IaCtaTt1010C.370.001161
ORF1ab/nsp31288T1288IaCtaTt99B.1.5960.000784
ORF1ab/nsp31288T1288IaCtaTt99Q.10.001137
ORF1ab/nsp31288T1288IaCtaTt88AY.50.000165
ORF1ab/nsp31288T1288IaCtaTt88R.10.00072
ORF1ab/nsp31288T1288IaCtaTt77B.1.2430.000487
ORF1ab/nsp31288T1288IaCtaTt77B.1.3460.009174
ORF1ab/nsp31288T1288IaCtaTt360.166667
ORF1ab/nsp31288T1288IaCtaTt66AY.450.00073
ORF1ab/nsp31288T1288IaCtaTt66B.1.1.280.001867
ORF1ab/nsp31288T1288IaCtaTt66B.1.1.3980.019355
ORF1ab/nsp31288T1288IaCtaTt66B.1.3060.034286
ORF1ab/nsp31288T1288IaCtaTt66B.1.466.20.002347
ORF1ab/nsp31288T1288IaCtaTt55AY.1040.009921
ORF1ab/nsp31288T1288IaCtaTt55AY.1190.000177
ORF1ab/nsp31288T1288IaCtaTt55AY.790.006053
ORF1ab/nsp31288T1288IaCtaTt55B.1.1.2140.000277
ORF1ab/nsp31288T1288IaCtaTt55B.1.1.2220.00102
ORF1ab/nsp31288T1288IaCtaTt55B.1.617.10.000645
ORF1ab/nsp31288T1288IaCtaTt55B.1.6190.004355
ORF1ab/nsp31288T1288IaCtaTt44A.23.10.002817
ORF1ab/nsp31288T1288IaCtaTt44AY.4.40.001637
ORF1ab/nsp31288T1288IaCtaTt44AY.610.000419
ORF1ab/nsp31288T1288IaCtaTt44AY.980.000316
ORF1ab/nsp31288T1288IaCtaTt44AY.99.20.000369
ORF1ab/nsp31288T1288IaCtaTt44B.1.1.2970.008949
ORF1ab/nsp31288T1288IaCtaTt44B.1.177.210.000306
ORF1ab/nsp31288T1288IaCtaTt44B.1.360.000584
ORF1ab/nsp31288T1288IaCtaTt44B.1.36.160.005698
ORF1ab/nsp31288T1288IaCtaTt44P.1.140.000191
ORF1ab/nsp31288T1288IaCtaTt33AY.1000.000138
ORF1ab/nsp31288T1288IaCtaTt33AY.1060.001005
ORF1ab/nsp31288T1288IaCtaTt33AY.1130.000427
ORF1ab/nsp31288T1288IaCtaTt33AY.1170.000254
ORF1ab/nsp31288T1288IaCtaTt33AY.1200.000112
ORF1ab/nsp31288T1288IaCtaTt33AY.340.000291
ORF1ab/nsp31288T1288IaCtaTt33AY.420.000121
ORF1ab/nsp31288T1288IaCtaTt33AY.860.00249
ORF1ab/nsp31288T1288IaCtaTt33AY.910.002191
ORF1ab/nsp31288T1288IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp31288T1288IaCtaTt33B.1.258.170.000312
ORF1ab/nsp31288T1288IaCtaTt33B.1.3090.142857
ORF1ab/nsp31288T1288IaCtaTt33P.1.70.000958
ORF1ab/nsp31288T1288IaCtaTt22AY.1160.000574
ORF1ab/nsp31288T1288IaCtaTt22AY.140.000176
ORF1ab/nsp31288T1288IaCtaTt22AY.190.002281
ORF1ab/nsp31288T1288IaCtaTt22AY.230.000139
ORF1ab/nsp31288T1288IaCtaTt22AY.290.000032
ORF1ab/nsp31288T1288IaCtaTt22AY.330.000134
ORF1ab/nsp31288T1288IaCtaTt22AY.46.60.000144
ORF1ab/nsp31288T1288IaCtaTt22AY.510.001818
ORF1ab/nsp31288T1288IaCtaTt22AY.540.000191
ORF1ab/nsp31288T1288IaCtaTt22AY.630.000774
ORF1ab/nsp31288T1288IaCtaTt22AY.740.000231
ORF1ab/nsp31288T1288IaCtaTt22AY.840.000875
ORF1ab/nsp31288T1288IaCtaTt22AY.900.001369
ORF1ab/nsp31288T1288IaCtaTt22AY.98.10.000097
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.3110.000716
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.4200.002012
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.700.000682
ORF1ab/nsp31288T1288IaCtaTt22B.1.177.120.000303
ORF1ab/nsp31288T1288IaCtaTt22B.1.177.730.001133
ORF1ab/nsp31288T1288IaCtaTt22B.1.2890.005319
ORF1ab/nsp31288T1288IaCtaTt22B.1.351.20.000605
ORF1ab/nsp31288T1288IaCtaTt22B.1.5250.000226
ORF1ab/nsp31288T1288IaCtaTt22B.1.5610.000794
ORF1ab/nsp31288T1288IaCtaTt22B.1.6230.001073
ORF1ab/nsp31288T1288IaCtaTt22B.1.6370.000146
ORF1ab/nsp31288T1288IaCtaTt22D.20.00015
ORF1ab/nsp31288T1288IaCtaTt22P.1.40.001953
ORF1ab/nsp31288T1288IaCtaTt22P.20.000373
ORF1ab/nsp31288T1288IaCtaTt22P.70.008734
ORF1ab/nsp31288T1288IaCtaTt22Q.80.00033
ORF1ab/nsp31288T1288IaCtaTt11A.2.50.000499
ORF1ab/nsp31288T1288IaCtaTt11A.30.002096
ORF1ab/nsp31288T1288IaCtaTt11AU.20.002421
ORF1ab/nsp31288T1288IaCtaTt11AY.1090.00074
ORF1ab/nsp31288T1288IaCtaTt11AY.1140.000231
ORF1ab/nsp31288T1288IaCtaTt11AY.380.000499
ORF1ab/nsp31288T1288IaCtaTt11AY.39.20.001541
ORF1ab/nsp31288T1288IaCtaTt11AY.4.10.000737
ORF1ab/nsp31288T1288IaCtaTt11AY.400.000964
ORF1ab/nsp31288T1288IaCtaTt11AY.46.40.000165
ORF1ab/nsp31288T1288IaCtaTt11AY.46.50.000198
ORF1ab/nsp31288T1288IaCtaTt11AY.5.40.000277
ORF1ab/nsp31288T1288IaCtaTt11AY.600.000938
ORF1ab/nsp31288T1288IaCtaTt11AY.620.000436
ORF1ab/nsp31288T1288IaCtaTt11AY.680.000274
ORF1ab/nsp31288T1288IaCtaTt11AY.70.000196
ORF1ab/nsp31288T1288IaCtaTt11AY.710.000475
ORF1ab/nsp31288T1288IaCtaTt11AY.770.001127
ORF1ab/nsp31288T1288IaCtaTt11AY.870.000833
ORF1ab/nsp31288T1288IaCtaTt11AY.9.20.000037
ORF1ab/nsp31288T1288IaCtaTt11AY.920.000287
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1280.007092
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1700.001247
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2200.001859
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2430.004082
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2910.000742
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.330.000421
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.370.000193
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.4870.005587
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.510.001718
ORF1ab/nsp31288T1288IaCtaTt11B.1.1120.005181
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.310.011494
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.810.000189
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.860.000183
ORF1ab/nsp31288T1288IaCtaTt11B.1.2060.000816
ORF1ab/nsp31288T1288IaCtaTt11B.1.221.10.002907
ORF1ab/nsp31288T1288IaCtaTt11B.1.258.210.007752
ORF1ab/nsp31288T1288IaCtaTt11B.1.3140.007519
ORF1ab/nsp31288T1288IaCtaTt11B.1.350.008475
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.170.000494
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.290.000517
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.80.001
ORF1ab/nsp31288T1288IaCtaTt11B.1.4520.013699
ORF1ab/nsp31288T1288IaCtaTt11B.1.4700.001404
ORF1ab/nsp31288T1288IaCtaTt11B.1.4910.052632
ORF1ab/nsp31288T1288IaCtaTt11B.1.4990.00105
ORF1ab/nsp31288T1288IaCtaTt11B.1.5090.000866
ORF1ab/nsp31288T1288IaCtaTt11B.1.5640.000426
ORF1ab/nsp31288T1288IaCtaTt11B.1.5750.000303
ORF1ab/nsp31288T1288IaCtaTt11B.1.5760.000907
ORF1ab/nsp31288T1288IaCtaTt11B.1.5950.000261
ORF1ab/nsp31288T1288IaCtaTt11B.110.005128
ORF1ab/nsp31288T1288IaCtaTt11B.550.00295
ORF1ab/nsp31288T1288IaCtaTt11C.40.01
ORF1ab/nsp31288T1288IaCtaTt11L.20.011364
ORF1ab/nsp31288T1288IaCtaTt11P.1.100.000269
ORF1ab/nsp31288T1288IaCtaTt11P.1.120.000484
ORF1ab/nsp31288T1288IaCtaTt11P.1.170.000162
ORF1ab/nsp31288T1288IaCtaTt11P.1.17.10.000875
ORF1ab/nsp31288T1288IaCtaTt11P.30.001595
ORF1ab/nsp31288T1288IaCtaTt11Y.10.012821