CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1288

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31288T1288IT2106InonsynaCtaTt493349290.9991896581-6583
ORF1ab/nsp31288T1288IT2106InonsynaCTaTC493340.0008108666581-6583
ORF1ab/nsp31288T1288delT2106deldelACT---30930916581-6583
ORF1ab/nsp31288T1288ST2106SnonsynaCtaGt1121030.9196436581-6583
ORF1ab/nsp31288T1288ST2106SnonsynActTct11260.05357146581-6583
ORF1ab/nsp31288T1288ST2106SnonsynaCTaGC11220.01785716581-6583
ORF1ab/nsp31288T1288ST2106SnonsynAcTTcC11210.008928576581-6583
ORF1ab/nsp31288T1288TT2106TsynacTacC95670.7052636581-6583
ORF1ab/nsp31288T1288TT2106TsynacTacA95210.2210536581-6583
ORF1ab/nsp31288T1288TT2106TsynacTacG9570.07368426581-6583
ORF1ab/nsp31288T1288AT2106AnonsynActGct69680.9855076581-6583
ORF1ab/nsp31288T1288AT2106AnonsynAcTGcC6910.01449286581-6583
ORF1ab/nsp31288T1288NT2106NnonsynaCtaAt43380.8837216581-6583
ORF1ab/nsp31288T1288NT2106NnonsynaCTaAC4350.1162796581-6583
ORF1ab/nsp31288T1288del1T2106del1delacTac-1260.56581-6583
ORF1ab/nsp31288T1288del1T2106del1delAct-ct1240.3333336581-6583
ORF1ab/nsp31288T1288del1T2106del1delACt-Mt1210.08333336581-6583
ORF1ab/nsp31288T1288del1T2106del1delaCta-t1210.08333336581-6583
ORF1ab/nsp31288T1288PT2106PnonsynActCct6616581-6583
ORF1ab/nsp31288T1288LT2106LnonsynACtCTt2216581-6583
ORF1ab/nsp31288T1288FT2106FnonsynACTTTC210.56581-6583
ORF1ab/nsp31288T1288FT2106FnonsynACtTTt210.56581-6583
ORF1ab/nsp31288T1288del2T2106del2delACt--t1116581-6583
ORF1ab/nsp31288T1288VT2106VnonsynACtGTt1116581-6583

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31288T1288IaCtaTt49294933All0.000943
ORF1ab/nsp31288T1288IaCTaTC44933All0.000001
ORF1ab/nsp31288T1288IaCtaTt11581158AY.40.001802
ORF1ab/nsp31288T1288IaCtaTt874874B.1.1.70.000782
ORF1ab/nsp31288T1288IaCtaTt312312B.1.2580.020763
ORF1ab/nsp31288T1288delACT---309309All0.000059
ORF1ab/nsp31288T1288IaCtaTt213213B.1.20.001876
ORF1ab/nsp31288T1288IaCtaTt194194AY.4.2.10.028903
ORF1ab/nsp31288T1288IaCtaTt188188AY.1030.001167
ORF1ab/nsp31288T1288IaCtaTt136136B.1.617.20.000512
ORF1ab/nsp31288T1288delACT---127127B.1.1.70.000114
ORF1ab/nsp31288T1288IaCtaTt124124P.10.001953
ORF1ab/nsp31288T1288IaCtaTt117117AY.430.000518
ORF1ab/nsp31288T1288IaCtaTt115115AY.440.0007
ORF1ab/nsp31288T1288SaCtaGt103112All0.00002
ORF1ab/nsp31288T1288SActTct6112All0.000001
ORF1ab/nsp31288T1288SaCTaGC2112All0
ORF1ab/nsp31288T1288SAcTTcC1112All0
ORF1ab/nsp31288T1288SaCtaGt100101AY.30.000995
ORF1ab/nsp31288T1288SActTct1101AY.30.00001
ORF1ab/nsp31288T1288TacTacC6795All0.000013
ORF1ab/nsp31288T1288TacTacA2195All0.000004
ORF1ab/nsp31288T1288TacTacG795All0.000001
ORF1ab/nsp31288T1288IaCtaTt9191AY.750.005098
ORF1ab/nsp31288T1288IaCtaTt8585B.1.1.1340.965909
ORF1ab/nsp31288T1288IaCtaTt8585B.1.3770.388128
ORF1ab/nsp31288T1288AActGct6869All0.000013
ORF1ab/nsp31288T1288AAcTGcC169All0
ORF1ab/nsp31288T1288IaCtaTt6363B.1.1770.00083
ORF1ab/nsp31288T1288IaCtaTt6363B.1.2210.004475
ORF1ab/nsp31288T1288IaCtaTt6363B.1.3690.017969
ORF1ab/nsp31288T1288IaCtaTt6060AY.1020.001591
ORF1ab/nsp31288T1288IaCtaTt5555AY.270.00356
ORF1ab/nsp31288T1288IaCtaTt5050B.1.1.5190.001986
ORF1ab/nsp31288T1288IaCtaTt4848AY.30.000477
ORF1ab/nsp31288T1288IaCtaTt4747B.1.160.210.959184
ORF1ab/nsp31288T1288IaCtaTt4546B.10.000412
ORF1ab/nsp31288T1288IaCTaTC146B.10.000009
ORF1ab/nsp31288T1288NaCtaAt3843All0.000007
ORF1ab/nsp31288T1288NaCTaAC543All0.000001
ORF1ab/nsp31288T1288delACT---4040AY.260.001132
ORF1ab/nsp31288T1288IaCtaTt3232AY.4.50.00344
ORF1ab/nsp31288T1288IaCtaTt3232P.1.10.010165
ORF1ab/nsp31288T1288IaCtaTt2828AY.250.000168
ORF1ab/nsp31288T1288IaCtaTt2828B.1.10.000508
ORF1ab/nsp31288T1288AActGct2828B.1.1770.000369
ORF1ab/nsp31288T1288IaCtaTt2626AY.200.00101
ORF1ab/nsp31288T1288TacTacA1123B.1.1.70.00001
ORF1ab/nsp31288T1288TacTacC1123B.1.1.70.00001
ORF1ab/nsp31288T1288TacTacG123B.1.1.70.000001
ORF1ab/nsp31288T1288IaCtaTt2020B.1.110.30.014368
ORF1ab/nsp31288T1288IaCtaTt2020B.1.2340.002639
ORF1ab/nsp31288T1288IaCtaTt2020B.1.3240.032103
ORF1ab/nsp31288T1288IaCtaTt2020B.1.5260.00047
ORF1ab/nsp31288T1288delACT---1919B.1.1770.00025
ORF1ab/nsp31288T1288NaCtaAt1717AY.40.000026
ORF1ab/nsp31288T1288IaCtaTt1717AY.470.000529
ORF1ab/nsp31288T1288AActGct1616B.1.1.70.000014
ORF1ab/nsp31288T1288IaCtaTt1616B.1.4290.000376
ORF1ab/nsp31288T1288delACT---1515AY.40.000023
ORF1ab/nsp31288T1288IaCtaTt1515AY.4.20.000325
ORF1ab/nsp31288T1288IaCtaTt1414AY.390.000346
ORF1ab/nsp31288T1288IaCtaTt1414B.1.6210.001239
ORF1ab/nsp31288T1288IaCtaTt1313AY.260.000368
ORF1ab/nsp31288T1288del1acTac-612All0.000001
ORF1ab/nsp31288T1288del1Act-ct412All0.000001
ORF1ab/nsp31288T1288del1ACt-Mt112All0
ORF1ab/nsp31288T1288del1aCta-t112All0
ORF1ab/nsp31288T1288IaCtaTt1212AY.39.10.000475
ORF1ab/nsp31288T1288IaCtaTt1212B.1.4270.000606
ORF1ab/nsp31288T1288IaCtaTt1212N.40.051064
ORF1ab/nsp31288T1288IaCtaTt1111B.1.177.750.011446
ORF1ab/nsp31288T1288IaCtaTt1010AY.1180.000626
ORF1ab/nsp31288T1288IaCtaTt1010B.1.1600.000312
ORF1ab/nsp31288T1288IaCtaTt1010B.1.3510.000297
ORF1ab/nsp31288T1288IaCtaTt1010B.1.5770.006873
ORF1ab/nsp31288T1288IaCtaTt1010B.1.6280.003524
ORF1ab/nsp31288T1288IaCtaTt1010C.370.001161
ORF1ab/nsp31288T1288IaCtaTt99B.1.5960.000784
ORF1ab/nsp31288T1288IaCtaTt99Q.10.001137
ORF1ab/nsp31288T1288delACT---88AY.4.50.00086
ORF1ab/nsp31288T1288AActGct78AY.440.000043
ORF1ab/nsp31288T1288AAcTGcC18AY.440.000006
ORF1ab/nsp31288T1288IaCtaTt88AY.50.000165
ORF1ab/nsp31288T1288IaCtaTt88R.10.00072
ORF1ab/nsp31288T1288delACT---77AY.430.000031
ORF1ab/nsp31288T1288TacTacC67AY.440.000037
ORF1ab/nsp31288T1288TacTacA17AY.440.000006
ORF1ab/nsp31288T1288IaCtaTt77B.1.2430.000487
ORF1ab/nsp31288T1288IaCtaTt77B.1.3460.009174
ORF1ab/nsp31288T1288delACT---77B.1.617.20.000026
ORF1ab/nsp31288T1288IaCtaTt360.166667
ORF1ab/nsp31288T1288IaCTaTC360.166667
ORF1ab/nsp31288T1288PActCct66All0.000001
ORF1ab/nsp31288T1288TacTacA66AY.250.000036
ORF1ab/nsp31288T1288IaCtaTt66AY.450.00073
ORF1ab/nsp31288T1288IaCtaTt66B.1.1.280.001867
ORF1ab/nsp31288T1288IaCtaTt66B.1.1.3980.019355
ORF1ab/nsp31288T1288IaCtaTt66B.1.3060.034286
ORF1ab/nsp31288T1288IaCtaTt66B.1.466.20.002347
ORF1ab/nsp31288T1288IaCtaTt55AY.1040.009921
ORF1ab/nsp31288T1288IaCtaTt55AY.1190.000177
ORF1ab/nsp31288T1288NaCtaAt55AY.30.00005
ORF1ab/nsp31288T1288IaCtaTt55AY.790.006053
ORF1ab/nsp31288T1288TacTacG25B.10.000018
ORF1ab/nsp31288T1288TacTacC25B.10.000018
ORF1ab/nsp31288T1288TacTacA15B.10.000009
ORF1ab/nsp31288T1288IaCtaTt55B.1.1.2140.000277
ORF1ab/nsp31288T1288IaCtaTt55B.1.1.2220.00102
ORF1ab/nsp31288T1288TacTacC55B.1.360.00073
ORF1ab/nsp31288T1288IaCtaTt55B.1.617.10.000645
ORF1ab/nsp31288T1288TacTacC45B.1.617.20.000015
ORF1ab/nsp31288T1288TacTacA15B.1.617.20.000004
ORF1ab/nsp31288T1288IaCtaTt55B.1.6190.004355
ORF1ab/nsp31288T1288SaCTaGC240.111111
ORF1ab/nsp31288T1288SActTct140.055556
ORF1ab/nsp31288T1288SAcTTcC140.055556
ORF1ab/nsp31288T1288IaCtaTt44A.23.10.002817
ORF1ab/nsp31288T1288IaCtaTt44AY.4.40.001637
ORF1ab/nsp31288T1288TacTacC34AY.430.000013
ORF1ab/nsp31288T1288TacTacG14AY.430.000004
ORF1ab/nsp31288T1288IaCtaTt44AY.610.000419
ORF1ab/nsp31288T1288IaCtaTt44AY.980.000316
ORF1ab/nsp31288T1288IaCtaTt44AY.99.20.000369
ORF1ab/nsp31288T1288delACT---44B.1.10.000073
ORF1ab/nsp31288T1288IaCtaTt44B.1.1.2970.008949
ORF1ab/nsp31288T1288IaCtaTt44B.1.177.210.000306
ORF1ab/nsp31288T1288IaCtaTt44B.1.360.000584
ORF1ab/nsp31288T1288IaCtaTt44B.1.36.160.005698
ORF1ab/nsp31288T1288NaCtaAt44B.1.617.20.000015
ORF1ab/nsp31288T1288IaCtaTt44P.1.140.000191
ORF1ab/nsp31288T1288IaCtaTt33AY.1000.000138
ORF1ab/nsp31288T1288TacTacC33AY.1030.000019
ORF1ab/nsp31288T1288IaCtaTt33AY.1060.001005
ORF1ab/nsp31288T1288IaCtaTt33AY.1130.000427
ORF1ab/nsp31288T1288IaCtaTt33AY.1170.000254
ORF1ab/nsp31288T1288IaCtaTt33AY.1200.000112
ORF1ab/nsp31288T1288IaCtaTt33AY.340.000291
ORF1ab/nsp31288T1288TacTacC33AY.40.000005
ORF1ab/nsp31288T1288IaCtaTt33AY.420.000121
ORF1ab/nsp31288T1288PActCct33AY.430.000013
ORF1ab/nsp31288T1288IaCtaTt33AY.860.00249
ORF1ab/nsp31288T1288IaCtaTt33AY.910.002191
ORF1ab/nsp31288T1288delACT---33B.10.000027
ORF1ab/nsp31288T1288NaCtaAt23B.1.10.000036
ORF1ab/nsp31288T1288NaCTaAC13B.1.10.000018
ORF1ab/nsp31288T1288delACT---33B.1.1.10.00098
ORF1ab/nsp31288T1288IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp31288T1288delACT---33B.1.177.70.000495
ORF1ab/nsp31288T1288IaCtaTt33B.1.258.170.000312
ORF1ab/nsp31288T1288IaCtaTt33B.1.3090.142857
ORF1ab/nsp31288T1288delACT---33B.1.36.170.001482
ORF1ab/nsp31288T1288IaCtaTt33P.1.70.000958
ORF1ab/nsp31288T1288LACtCTt220.111111
ORF1ab/nsp31288T1288NaCTaAC220.111111
ORF1ab/nsp31288T1288FACtTTt120.055556
ORF1ab/nsp31288T1288FACTTTC120.055556
ORF1ab/nsp31288T1288LACtCTt22All0
ORF1ab/nsp31288T1288FACTTTC12All0
ORF1ab/nsp31288T1288FACtTTt12All0
ORF1ab/nsp31288T1288AActGct22AY.1030.000012
ORF1ab/nsp31288T1288IaCtaTt22AY.1160.000574
ORF1ab/nsp31288T1288IaCtaTt22AY.140.000176
ORF1ab/nsp31288T1288IaCtaTt22AY.190.002281
ORF1ab/nsp31288T1288delACT---22AY.190.002281
ORF1ab/nsp31288T1288IaCtaTt22AY.230.000139
ORF1ab/nsp31288T1288delACT---22AY.250.000012
ORF1ab/nsp31288T1288AActGct22AY.290.000032
ORF1ab/nsp31288T1288IaCtaTt22AY.290.000032
ORF1ab/nsp31288T1288TacTacC22AY.30.00002
ORF1ab/nsp31288T1288IaCtaTt22AY.330.000134
ORF1ab/nsp31288T1288NaCtaAt22AY.390.000049
ORF1ab/nsp31288T1288TacTacC22AY.39.10.000079
ORF1ab/nsp31288T1288del1acTac-12AY.40.000002
ORF1ab/nsp31288T1288del1Act-ct12AY.40.000002
ORF1ab/nsp31288T1288TacTacC22AY.420.00008
ORF1ab/nsp31288T1288NaCtaAt22AY.430.000009
ORF1ab/nsp31288T1288IaCtaTt22AY.46.60.000144
ORF1ab/nsp31288T1288delACT---22AY.50.000041
ORF1ab/nsp31288T1288IaCtaTt22AY.510.001818
ORF1ab/nsp31288T1288IaCtaTt22AY.540.000191
ORF1ab/nsp31288T1288IaCtaTt22AY.630.000774
ORF1ab/nsp31288T1288IaCtaTt22AY.740.000231
ORF1ab/nsp31288T1288delACT---22AY.75.10.000361
ORF1ab/nsp31288T1288IaCtaTt22AY.840.000875
ORF1ab/nsp31288T1288delACT---22AY.90.000135
ORF1ab/nsp31288T1288IaCtaTt22AY.900.001369
ORF1ab/nsp31288T1288IaCtaTt22AY.98.10.000097
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.3110.000716
ORF1ab/nsp31288T1288delACT---22B.1.1.370.000386
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.4200.002012
ORF1ab/nsp31288T1288NaCTaAC22B.1.1.70.000002
ORF1ab/nsp31288T1288IaCtaTt22B.1.1.700.000682
ORF1ab/nsp31288T1288delACT---22B.1.1600.000062
ORF1ab/nsp31288T1288IaCtaTt22B.1.177.120.000303
ORF1ab/nsp31288T1288delACT---22B.1.177.40.000422
ORF1ab/nsp31288T1288IaCtaTt22B.1.177.730.001133
ORF1ab/nsp31288T1288del1Act-ct12B.1.20.000009
ORF1ab/nsp31288T1288del1aCta-t12B.1.20.000009
ORF1ab/nsp31288T1288IaCtaTt22B.1.2890.005319
ORF1ab/nsp31288T1288IaCtaTt22B.1.351.20.000605
ORF1ab/nsp31288T1288TacTacC22B.1.351.30.001753
ORF1ab/nsp31288T1288IaCtaTt22B.1.5250.000226
ORF1ab/nsp31288T1288IaCtaTt22B.1.5610.000794
ORF1ab/nsp31288T1288IaCtaTt22B.1.6230.001073
ORF1ab/nsp31288T1288IaCtaTt22B.1.6370.000146
ORF1ab/nsp31288T1288TacTacC22D.20.00015
ORF1ab/nsp31288T1288IaCtaTt22D.20.00015
ORF1ab/nsp31288T1288TacTacC12P.10.000016
ORF1ab/nsp31288T1288TacTacG12P.10.000016
ORF1ab/nsp31288T1288IaCtaTt22P.1.40.001953
ORF1ab/nsp31288T1288IaCtaTt22P.20.000373
ORF1ab/nsp31288T1288IaCtaTt22P.70.008734
ORF1ab/nsp31288T1288IaCtaTt22Q.80.00033
ORF1ab/nsp31288T1288TacTacC110.055556
ORF1ab/nsp31288T1288IaCtaTt11A.2.50.000499
ORF1ab/nsp31288T1288IaCtaTt11A.30.002096
ORF1ab/nsp31288T1288delACT---11AD.20.000219
ORF1ab/nsp31288T1288VACtGTt11All0
ORF1ab/nsp31288T1288del2ACt--t11All0
ORF1ab/nsp31288T1288IaCtaTt11AU.20.002421
ORF1ab/nsp31288T1288TacTacC11AY.1060.000335
ORF1ab/nsp31288T1288IaCtaTt11AY.1090.00074
ORF1ab/nsp31288T1288delACT---11AY.1130.000142
ORF1ab/nsp31288T1288TacTacG11AY.1130.000142
ORF1ab/nsp31288T1288IaCtaTt11AY.1140.000231
ORF1ab/nsp31288T1288NaCtaAt11AY.1180.000063
ORF1ab/nsp31288T1288NaCtaAt11AY.1190.000035
ORF1ab/nsp31288T1288SaCtaGt11AY.1190.000035
ORF1ab/nsp31288T1288TacTacC11AY.1190.000035
ORF1ab/nsp31288T1288PActCct11AY.1190.000035
ORF1ab/nsp31288T1288delACT---11AY.120.000316
ORF1ab/nsp31288T1288delACT---11AY.1200.000037
ORF1ab/nsp31288T1288TacTacC11AY.140.000088
ORF1ab/nsp31288T1288TacTacA11AY.230.00007
ORF1ab/nsp31288T1288AActGct11AY.250.000006
ORF1ab/nsp31288T1288TacTacC11AY.370.000316
ORF1ab/nsp31288T1288IaCtaTt11AY.380.000499
ORF1ab/nsp31288T1288TacTacC11AY.390.000025
ORF1ab/nsp31288T1288IaCtaTt11AY.39.20.001541
ORF1ab/nsp31288T1288IaCtaTt11AY.4.10.000737
ORF1ab/nsp31288T1288AActGct11AY.4.20.000022
ORF1ab/nsp31288T1288del1Act-ct11AY.4.50.000107
ORF1ab/nsp31288T1288IaCtaTt11AY.400.000964
ORF1ab/nsp31288T1288delACT---11AY.440.000006
ORF1ab/nsp31288T1288delACT---11AY.46.20.000635
ORF1ab/nsp31288T1288IaCtaTt11AY.46.40.000165
ORF1ab/nsp31288T1288IaCtaTt11AY.46.50.000198
ORF1ab/nsp31288T1288NaCtaAt11AY.46.60.000072
ORF1ab/nsp31288T1288delACT---11AY.470.000031
ORF1ab/nsp31288T1288IaCtaTt11AY.5.40.000277
ORF1ab/nsp31288T1288TacTacC11AY.500.000799
ORF1ab/nsp31288T1288delACT---11AY.590.00053
ORF1ab/nsp31288T1288AActGct11AY.60.000041
ORF1ab/nsp31288T1288delACT---11AY.60.000041
ORF1ab/nsp31288T1288delACT---11AY.600.000938
ORF1ab/nsp31288T1288IaCtaTt11AY.600.000938
ORF1ab/nsp31288T1288IaCtaTt11AY.620.000436
ORF1ab/nsp31288T1288IaCtaTt11AY.680.000274
ORF1ab/nsp31288T1288IaCtaTt11AY.70.000196
ORF1ab/nsp31288T1288TacTacC11AY.700.000209
ORF1ab/nsp31288T1288IaCtaTt11AY.710.000475
ORF1ab/nsp31288T1288del1acTac-11AY.750.000056
ORF1ab/nsp31288T1288AActGct11AY.750.000056
ORF1ab/nsp31288T1288IaCtaTt11AY.770.001127
ORF1ab/nsp31288T1288delACT---11AY.840.000437
ORF1ab/nsp31288T1288IaCtaTt11AY.870.000833
ORF1ab/nsp31288T1288AActGct11AY.880.000884
ORF1ab/nsp31288T1288TacTacC11AY.9.10.000084
ORF1ab/nsp31288T1288IaCtaTt11AY.9.20.000037
ORF1ab/nsp31288T1288IaCtaTt11AY.920.000287
ORF1ab/nsp31288T1288TacTacC11AY.950.000761
ORF1ab/nsp31288T1288TacTacG11AY.990.001049
ORF1ab/nsp31288T1288del1acTac-11B0.000128
ORF1ab/nsp31288T1288AActGct11B.10.000009
ORF1ab/nsp31288T1288PActCct11B.10.000009
ORF1ab/nsp31288T1288del1acTac-11B.10.000009
ORF1ab/nsp31288T1288SaCtaGt11B.1.10.000018
ORF1ab/nsp31288T1288AActGct11B.1.10.000018
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1280.007092
ORF1ab/nsp31288T1288TacTacC11B.1.1.1290.009174
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.1700.001247
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2200.001859
ORF1ab/nsp31288T1288delACT---11B.1.1.2210.010101
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2430.004082
ORF1ab/nsp31288T1288TacTacC11B.1.1.250.000569
ORF1ab/nsp31288T1288SActTct11B.1.1.2570.009709
ORF1ab/nsp31288T1288delACT---11B.1.1.2580.003257
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.2910.000742
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp31288T1288delACT---11B.1.1.3110.000358
ORF1ab/nsp31288T1288delACT---11B.1.1.3120.001912
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.330.000421
ORF1ab/nsp31288T1288delACT---11B.1.1.3480.000796
ORF1ab/nsp31288T1288delACT---11B.1.1.3610.045455
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.370.000193
ORF1ab/nsp31288T1288TacTacC11B.1.1.3850.004464
ORF1ab/nsp31288T1288delACT---11B.1.1.390.00051
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.390.00051
ORF1ab/nsp31288T1288delACT---11B.1.1.4090.002833
ORF1ab/nsp31288T1288delACT---11B.1.1.440.00241
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.4870.005587
ORF1ab/nsp31288T1288IaCtaTt11B.1.1.510.001718
ORF1ab/nsp31288T1288NaCtaAt11B.1.1.5190.00004
ORF1ab/nsp31288T1288SActTct11B.1.1.630.000386
ORF1ab/nsp31288T1288SActTct11B.1.1.70.000001
ORF1ab/nsp31288T1288del1acTac-11B.1.1.70.000001
ORF1ab/nsp31288T1288PActCct11B.1.1.70.000001
ORF1ab/nsp31288T1288del2ACt--t11B.1.1.70.000001
ORF1ab/nsp31288T1288VACtGTt11B.1.1.70.000001
ORF1ab/nsp31288T1288delACT---11B.1.1.700.000341
ORF1ab/nsp31288T1288IaCtaTt11B.1.1120.005181
ORF1ab/nsp31288T1288SActTct11B.1.1600.000031
ORF1ab/nsp31288T1288del1ACt-Mt11B.1.1770.000013
ORF1ab/nsp31288T1288TacTacC11B.1.1770.000013
ORF1ab/nsp31288T1288delACT---11B.1.177.110.001698
ORF1ab/nsp31288T1288delACT---11B.1.177.150.000631
ORF1ab/nsp31288T1288delACT---11B.1.177.160.000664
ORF1ab/nsp31288T1288delACT---11B.1.177.170.000821
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.310.011494
ORF1ab/nsp31288T1288delACT---11B.1.177.510.004566
ORF1ab/nsp31288T1288delACT---11B.1.177.520.001757
ORF1ab/nsp31288T1288AActGct11B.1.177.530.002392
ORF1ab/nsp31288T1288delACT---11B.1.177.560.000668
ORF1ab/nsp31288T1288delACT---11B.1.177.600.000218
ORF1ab/nsp31288T1288del1Act-ct11B.1.177.630.002703
ORF1ab/nsp31288T1288AActGct11B.1.177.70.000165
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.810.000189
ORF1ab/nsp31288T1288IaCtaTt11B.1.177.860.000183
ORF1ab/nsp31288T1288delACT---11B.1.177.870.000728
ORF1ab/nsp31288T1288delACT---11B.1.177.90.001332
ORF1ab/nsp31288T1288NaCtaAt11B.1.20.000009
ORF1ab/nsp31288T1288delACT---11B.1.20.000009
ORF1ab/nsp31288T1288AActGct11B.1.20.000009
ORF1ab/nsp31288T1288IaCtaTt11B.1.2060.000816
ORF1ab/nsp31288T1288delACT---11B.1.2210.000071
ORF1ab/nsp31288T1288IaCtaTt11B.1.221.10.002907
ORF1ab/nsp31288T1288delACT---11B.1.221.10.002907
ORF1ab/nsp31288T1288delACT---11B.1.2580.000067
ORF1ab/nsp31288T1288delACT---11B.1.258.100.011364
ORF1ab/nsp31288T1288IaCtaTt11B.1.258.210.007752
ORF1ab/nsp31288T1288delACT---11B.1.2790.000514
ORF1ab/nsp31288T1288IaCtaTt11B.1.3140.007519
ORF1ab/nsp31288T1288delACT---11B.1.3400.004292
ORF1ab/nsp31288T1288delACT---11B.1.3490.000715
ORF1ab/nsp31288T1288IaCtaTt11B.1.350.008475
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.170.000494
ORF1ab/nsp31288T1288delACT---11B.1.36.180.00042
ORF1ab/nsp31288T1288AActGct11B.1.36.270.000763
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.290.000517
ORF1ab/nsp31288T1288delACT---11B.1.36.390.002217
ORF1ab/nsp31288T1288IaCtaTt11B.1.36.80.001
ORF1ab/nsp31288T1288TacTacC11B.1.3770.004566
ORF1ab/nsp31288T1288delACT---11B.1.3890.001002
ORF1ab/nsp31288T1288delACT---11B.1.4090.000781
ORF1ab/nsp31288T1288del1acTac-11B.1.4090.000781
ORF1ab/nsp31288T1288TacTacC11B.1.4290.000024
ORF1ab/nsp31288T1288IaCtaTt11B.1.4520.013699
ORF1ab/nsp31288T1288TacTacC11B.1.4560.003268
ORF1ab/nsp31288T1288IaCtaTt11B.1.4700.001404
ORF1ab/nsp31288T1288IaCtaTt11B.1.4910.052632
ORF1ab/nsp31288T1288IaCtaTt11B.1.4990.00105
ORF1ab/nsp31288T1288IaCtaTt11B.1.5090.000866
ORF1ab/nsp31288T1288delACT---11B.1.5260.000024
ORF1ab/nsp31288T1288TacTacC11B.1.5480.035714
ORF1ab/nsp31288T1288IaCtaTt11B.1.5640.000426
ORF1ab/nsp31288T1288IaCtaTt11B.1.5750.000303
ORF1ab/nsp31288T1288IaCtaTt11B.1.5760.000907
ORF1ab/nsp31288T1288delACT---11B.1.5850.027778
ORF1ab/nsp31288T1288delACT---11B.1.5880.00091
ORF1ab/nsp31288T1288IaCtaTt11B.1.5950.000261
ORF1ab/nsp31288T1288SaCtaGt11B.1.617.20.000004
ORF1ab/nsp31288T1288AActGct11B.1.617.20.000004
ORF1ab/nsp31288T1288delACT---11B.1.617.30.002985
ORF1ab/nsp31288T1288delACT---11B.1.6210.000089
ORF1ab/nsp31288T1288delACT---11B.1.6300.005236
ORF1ab/nsp31288T1288IaCtaTt11B.110.005128
ORF1ab/nsp31288T1288NaCtaAt11B.230.002924
ORF1ab/nsp31288T1288delACT---11B.340.013699
ORF1ab/nsp31288T1288IaCtaTt11B.550.00295
ORF1ab/nsp31288T1288AActGct11C.370.000116
ORF1ab/nsp31288T1288IaCtaTt11C.40.01
ORF1ab/nsp31288T1288IaCtaTt11L.20.011364
ORF1ab/nsp31288T1288TacTacC11N.50.001767
ORF1ab/nsp31288T1288delACT---11P.10.000016
ORF1ab/nsp31288T1288IaCtaTt11P.1.100.000269
ORF1ab/nsp31288T1288IaCtaTt11P.1.120.000484
ORF1ab/nsp31288T1288delACT---11P.1.150.000232
ORF1ab/nsp31288T1288IaCtaTt11P.1.170.000162
ORF1ab/nsp31288T1288IaCtaTt11P.1.17.10.000875
ORF1ab/nsp31288T1288IaCtaTt11P.30.001595
ORF1ab/nsp31288T1288delACT---11Q.10.000126
ORF1ab/nsp31288T1288delACT---11U.30.003861
ORF1ab/nsp31288T1288IaCtaTt11Y.10.012821