CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1285

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31285S1285FS2103FnonsyntCttTt16775167740.999946572-6574
ORF1ab/nsp31285S1285FS2103FnonsyntCTtTC1677510.00005961256572-6574
ORF1ab/nsp31285S1285AS2103AnonsynTctGct1149114916572-6574
ORF1ab/nsp31285S1285delS2103deldelTCT---29129116572-6574
ORF1ab/nsp31285S1285YS2103YnonsyntCttAt15015016572-6574
ORF1ab/nsp31285S1285SS2103SsyntcTtcC1231100.8943096572-6574
ORF1ab/nsp31285S1285SS2103SsyntcTtcA12380.06504066572-6574
ORF1ab/nsp31285S1285SS2103SsyntcTtcG12350.04065046572-6574
ORF1ab/nsp31285S1285PS2103PnonsynTctCct1081070.9907416572-6574
ORF1ab/nsp31285S1285PS2103PnonsynTcTCcA10810.009259266572-6574
ORF1ab/nsp31285S1285CS2103CnonsyntCttGt43410.9534886572-6574
ORF1ab/nsp31285S1285CS2103CnonsyntCTtGC4320.04651166572-6574
ORF1ab/nsp31285S1285TS2103TnonsynTctAct18150.8333336572-6574
ORF1ab/nsp31285S1285TS2103TnonsynTcTAcC1820.1111116572-6574
ORF1ab/nsp31285S1285TS2103TnonsynTcTAcG1810.05555566572-6574
ORF1ab/nsp31285S1285del1S2103del1deltCtt-t860.756572-6574
ORF1ab/nsp31285S1285del1S2103del1deltcTtc-810.1256572-6574
ORF1ab/nsp31285S1285del1S2103del1delTct-ct810.1256572-6574
ORF1ab/nsp31285S1285VS2103VnonsynTCTGTC2216572-6574
ORF1ab/nsp31285S1285LS2103LnonsynTCTCTG1116572-6574
ORF1ab/nsp31285S1285del2S2103del2delTCt--t1116572-6574

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31285S1285FtCttTt1677416775All0.003208
ORF1ab/nsp31285S1285FtCTtTC116775All0
ORF1ab/nsp31285S1285FtCttTt45964596B.1.1.70.004114
ORF1ab/nsp31285S1285FtCttTt33113311AY.40.005153
ORF1ab/nsp31285S1285FtCttTt13351336B.1.617.20.005027
ORF1ab/nsp31285S1285FtCTtTC11336B.1.617.20.000004
ORF1ab/nsp31285S1285ATctGct11491149All0.00022
ORF1ab/nsp31285S1285ATctGct10921092B.1.1.70.000978
ORF1ab/nsp31285S1285FtCttTt815815AY.730.542249
ORF1ab/nsp31285S1285FtCttTt553553B.1.1.3260.973592
ORF1ab/nsp31285S1285FtCttTt471471AY.430.002087
ORF1ab/nsp31285S1285FtCttTt441441B.1.36.390.977827
ORF1ab/nsp31285S1285FtCttTt345345B.1.4290.008117
ORF1ab/nsp31285S1285delTCT---291291All0.000056
ORF1ab/nsp31285S1285FtCttTt243243B.1.20.00214
ORF1ab/nsp31285S1285FtCttTt239239B.10.002189
ORF1ab/nsp31285S1285FtCttTt239239B.1.6210.021156
ORF1ab/nsp31285S1285FtCttTt232232B.1.5260.005453
ORF1ab/nsp31285S1285FtCttTt226226B.1.1.2320.410163
ORF1ab/nsp31285S1285FtCttTt220220AY.1020.005833
ORF1ab/nsp31285S1285FtCttTt200200B.1.1.80.716846
ORF1ab/nsp31285S1285FtCttTt177177P.10.002788
ORF1ab/nsp31285S1285FtCttTt168168AY.440.001023
ORF1ab/nsp31285S1285FtCttTt168168B.1.1.5190.006671
ORF1ab/nsp31285S1285FtCttTt156156B.1.10.00283
ORF1ab/nsp31285S1285YtCttAt150150All0.000029
ORF1ab/nsp31285S1285FtCttTt140140AY.30.001392
ORF1ab/nsp31285S1285delTCT---126126B.1.1.70.000113
ORF1ab/nsp31285S1285StcTtcC110123All0.000021
ORF1ab/nsp31285S1285StcTtcA8123All0.000002
ORF1ab/nsp31285S1285StcTtcG5123All0.000001
ORF1ab/nsp31285S1285YtCttAt116116AY.40.000181
ORF1ab/nsp31285S1285PTctCct107108All0.00002
ORF1ab/nsp31285S1285PTcTCcA1108All0
ORF1ab/nsp31285S1285FtCttTt9898AY.1030.000608
ORF1ab/nsp31285S1285FtCttTt9393AY.250.000559
ORF1ab/nsp31285S1285FtCttTt8383B.1.1.2341
ORF1ab/nsp31285S1285FtCttTt7979AK.11
ORF1ab/nsp31285S1285FtCttTt6969B.1.1770.000909
ORF1ab/nsp31285S1285FtCttTt5959AY.750.003305
ORF1ab/nsp31285S1285FtCttTt5959B.1.3510.001754
ORF1ab/nsp31285S1285FtCttTt5656AY.390.001384
ORF1ab/nsp31285S1285StcTtcC5252AY.200.002021
ORF1ab/nsp31285S1285FtCttTt5252B.1.1.700.017735
ORF1ab/nsp31285S1285FtCttTt5050B.1.5250.005658
ORF1ab/nsp31285S1285FtCttTt5050C.370.005803
ORF1ab/nsp31285S1285FtCttTt4848Q.10.006064
ORF1ab/nsp31285S1285FtCttTt4747AY.1200.001747
ORF1ab/nsp31285S1285CtCttGt4143All0.000008
ORF1ab/nsp31285S1285CtCTtGC243All0
ORF1ab/nsp31285S1285FtCttTt4242AY.1170.00355
ORF1ab/nsp31285S1285FtCttTt4040B.1.5370.8
ORF1ab/nsp31285S1285FtCttTt4040B.1.5820.019627
ORF1ab/nsp31285S1285FtCttTt3939AY.4.20.000846
ORF1ab/nsp31285S1285FtCttTt3939B.1.1260.049745
ORF1ab/nsp31285S1285FtCttTt3636AY.260.001019
ORF1ab/nsp31285S1285FtCttTt3636N.90.214286
ORF1ab/nsp31285S1285FtCttTt3535B.1.2210.002486
ORF1ab/nsp31285S1285FtCttTt3434B.1.6370.002484
ORF1ab/nsp31285S1285FtCttTt3232AY.60.001316
ORF1ab/nsp31285S1285FtCttTt3232P.1.150.007435
ORF1ab/nsp31285S1285PTctCct3131R.10.00279
ORF1ab/nsp31285S1285FtCttTt2626B.1.1.2140.001442
ORF1ab/nsp31285S1285FtCttTt2626B.1.177.550.060606
ORF1ab/nsp31285S1285FtCttTt2525B.1.4270.001262
ORF1ab/nsp31285S1285FtCttTt2424AY.290.000379
ORF1ab/nsp31285S1285FtCttTt2323AY.200.000894
ORF1ab/nsp31285S1285FtCttTt2323B.1.1.2260.133721
ORF1ab/nsp31285S1285FtCttTt2222AK.21
ORF1ab/nsp31285S1285FtCttTt2222AY.1190.000777
ORF1ab/nsp31285S1285FtCttTt2222AY.50.000454
ORF1ab/nsp31285S1285FtCttTt2222B.1.1.3050.084942
ORF1ab/nsp31285S1285FtCttTt2121AY.1180.001316
ORF1ab/nsp31285S1285delTCT---2121B.1.1770.000277
ORF1ab/nsp31285S1285FtCttTt2020AY.610.002096
ORF1ab/nsp31285S1285TTctAct1518All0.000003
ORF1ab/nsp31285S1285TTcTAcC218All0
ORF1ab/nsp31285S1285TTcTAcG118All0
ORF1ab/nsp31285S1285FtCttTt1818AY.1000.000828
ORF1ab/nsp31285S1285FtCttTt1818AY.34.10.009179
ORF1ab/nsp31285S1285FtCttTt1717AY.1130.002421
ORF1ab/nsp31285S1285delTCT---1717AY.40.000026
ORF1ab/nsp31285S1285FtCttTt1717AY.420.000684
ORF1ab/nsp31285S1285FtCttTt1717AY.470.000529
ORF1ab/nsp31285S1285FtCttTt1717B.6.80.140496
ORF1ab/nsp31285S1285FtCttTt1616AY.98.10.000775
ORF1ab/nsp31285S1285PTctCct1515B.1.1770.000198
ORF1ab/nsp31285S1285FtCttTt1515P.1.140.000717
ORF1ab/nsp31285S1285FtCttTt1414B.1.1.280.004357
ORF1ab/nsp31285S1285FtCttTt1414B.1.1600.000437
ORF1ab/nsp31285S1285FtCttTt1414B.1.177.540.00849
ORF1ab/nsp31285S1285ATctGct1313AY.40.00002
ORF1ab/nsp31285S1285ATctGct1313AY.440.000079
ORF1ab/nsp31285S1285FtCttTt1313AY.530.003738
ORF1ab/nsp31285S1285FtCttTt1313B.1.1.2220.002652
ORF1ab/nsp31285S1285FtCttTt1313B.1.2430.000905
ORF1ab/nsp31285S1285FtCttTt1212AY.460.001249
ORF1ab/nsp31285S1285FtCttTt1212AY.7.10.001352
ORF1ab/nsp31285S1285FtCttTt1111AY.450.001339
ORF1ab/nsp31285S1285FtCttTt1111B.1.1.1760.004833
ORF1ab/nsp31285S1285CtCttGt1010AY.40.000016
ORF1ab/nsp31285S1285FtCttTt1010AY.650.00533
ORF1ab/nsp31285S1285FtCttTt1010B.1.1.1210.024272
ORF1ab/nsp31285S1285FtCttTt1010B.1.4060.060606
ORF1ab/nsp31285S1285ATctGct1010B.1.5260.000235
ORF1ab/nsp31285S1285FtCttTt1010P.1.170.001618
ORF1ab/nsp31285S1285FtCttTt1010Q.80.001649
ORF1ab/nsp31285S1285delTCT---99AY.360.001334
ORF1ab/nsp31285S1285delTCT---99AY.4.50.000967
ORF1ab/nsp31285S1285delTCT---99AY.430.00004
ORF1ab/nsp31285S1285FtCttTt99AY.75.10.001623
ORF1ab/nsp31285S1285FtCttTt99AY.840.003937
ORF1ab/nsp31285S1285FtCttTt99AY.930.002458
ORF1ab/nsp31285S1285FtCttTt99B.1.1.3180.002716
ORF1ab/nsp31285S1285PTctCct99B.1.20.000079
ORF1ab/nsp31285S1285FtCttTt99B.1.2580.000599
ORF1ab/nsp31285S1285FtCttTt99B.1.617.10.001161
ORF1ab/nsp31285S1285CtCttGt99B.1.617.20.000034
ORF1ab/nsp31285S1285del1tCtt-t68All0.000001
ORF1ab/nsp31285S1285del1tcTtc-18All0
ORF1ab/nsp31285S1285del1Tct-ct18All0
ORF1ab/nsp31285S1285FtCttTt88AY.120.10.002568
ORF1ab/nsp31285S1285FtCttTt88AY.850.003417
ORF1ab/nsp31285S1285delTCT---88B.10.000073
ORF1ab/nsp31285S1285FtCttTt88B.1.1.4160.00724
ORF1ab/nsp31285S1285TTctAct88B.1.1.70.000007
ORF1ab/nsp31285S1285FtCttTt88B.1.2340.001056
ORF1ab/nsp31285S1285FtCttTt77AY.1010.003433
ORF1ab/nsp31285S1285FtCttTt77AY.1210.000947
ORF1ab/nsp31285S1285FtCttTt77AY.230.000488
ORF1ab/nsp31285S1285FtCttTt77AY.410.002058
ORF1ab/nsp31285S1285FtCttTt77AY.700.00146
ORF1ab/nsp31285S1285FtCttTt77AY.9.10.000586
ORF1ab/nsp31285S1285FtCttTt77AY.910.005113
ORF1ab/nsp31285S1285FtCttTt77B.1.1.3930.777778
ORF1ab/nsp31285S1285FtCttTt77B.1.1.4290.032258
ORF1ab/nsp31285S1285CtCttGt77B.1.1.70.000006
ORF1ab/nsp31285S1285StcTtcC67B.1.1.70.000005
ORF1ab/nsp31285S1285PTctCct67B.1.1.70.000005
ORF1ab/nsp31285S1285StcTtcG17B.1.1.70.000001
ORF1ab/nsp31285S1285PTcTCcA17B.1.1.70.000001
ORF1ab/nsp31285S1285FtCttTt77B.1.258.170.000728
ORF1ab/nsp31285S1285FtCttTt77B.1.36.290.003621
ORF1ab/nsp31285S1285delTCT---77B.1.617.20.000026
ORF1ab/nsp31285S1285StcTtcC77C.36.30.003971
ORF1ab/nsp31285S1285FtCttTt66AY.1070.002796
ORF1ab/nsp31285S1285FtCttTt66AY.140.000528
ORF1ab/nsp31285S1285FtCttTt66AY.330.000401
ORF1ab/nsp31285S1285YtCttAt66AY.390.000148
ORF1ab/nsp31285S1285FtCttTt66AY.4.50.000645
ORF1ab/nsp31285S1285FtCttTt66AY.540.000572
ORF1ab/nsp31285S1285ATctGct66B.10.000055
ORF1ab/nsp31285S1285FtCttTt66B.1.2650.007624
ORF1ab/nsp31285S1285FtCttTt66B.1.36.170.002964
ORF1ab/nsp31285S1285FtCttTt66B.1.5700.017647
ORF1ab/nsp31285S1285FtCttTt66B.1.5960.000523
ORF1ab/nsp31285S1285FtCttTt66P.20.00112
ORF1ab/nsp31285S1285FtCttTt66Q.40.002729
ORF1ab/nsp31285S1285FtCttTt55A.2.50.002495
ORF1ab/nsp31285S1285FtCttTt55AD.20.001095
ORF1ab/nsp31285S1285FtCttTt55AY.130.000805
ORF1ab/nsp31285S1285FtCttTt55AY.160.001898
ORF1ab/nsp31285S1285FtCttTt55AY.39.10.000198
ORF1ab/nsp31285S1285FtCttTt55B.1.1.2070.00591
ORF1ab/nsp31285S1285FtCttTt55B.1.1.2250.035971
ORF1ab/nsp31285S1285FtCttTt55B.1.1.3170.002058
ORF1ab/nsp31285S1285FtCttTt55B.1.1.3980.016129
ORF1ab/nsp31285S1285FtCttTt55B.1.177.330.008224
ORF1ab/nsp31285S1285PTctCct55B.1.177.560.003338
ORF1ab/nsp31285S1285FtCttTt55B.1.36.80.005
ORF1ab/nsp31285S1285FtCttTt55R.10.00045
ORF1ab/nsp31285S1285CtCttGt44AY.1020.000106
ORF1ab/nsp31285S1285StcTtcC44AY.1070.001864
ORF1ab/nsp31285S1285FtCttTt44AY.1140.000924
ORF1ab/nsp31285S1285delTCT---44AY.260.000113
ORF1ab/nsp31285S1285FtCttTt44AY.340.000388
ORF1ab/nsp31285S1285FtCttTt44AY.360.000593
ORF1ab/nsp31285S1285StcTtcC44AY.40.000006
ORF1ab/nsp31285S1285PTctCct44AY.440.000024
ORF1ab/nsp31285S1285FtCttTt44AY.46.40.000658
ORF1ab/nsp31285S1285FtCttTt44AY.980.000316
ORF1ab/nsp31285S1285delTCT---44B.1.10.000073
ORF1ab/nsp31285S1285FtCttTt44B.1.1.2160.003562
ORF1ab/nsp31285S1285FtCttTt44B.1.1.2690.005413
ORF1ab/nsp31285S1285FtCttTt44B.1.1.3850.017857
ORF1ab/nsp31285S1285FtCttTt44B.1.1.4200.004024
ORF1ab/nsp31285S1285YtCttAt44B.1.1.70.000004
ORF1ab/nsp31285S1285FtCttTt44B.1.360.000584
ORF1ab/nsp31285S1285StcTtcC44B.1.617.20.000015
ORF1ab/nsp31285S1285FtCttTt44P.1.120.001936
ORF1ab/nsp31285S1285FtCttTt44P.1.20.004624
ORF1ab/nsp31285S1285FtCttTt44P.1.40.003906
ORF1ab/nsp31285S1285FtCttTt44P.70.017467
ORF1ab/nsp31285S1285FtCttTt44Q.30.00058
ORF1ab/nsp31285S1285FtCttTt33A.10.000846
ORF1ab/nsp31285S1285PTctCct33AY.1030.000019
ORF1ab/nsp31285S1285FtCttTt33AY.1090.002219
ORF1ab/nsp31285S1285FtCttTt33AY.1100.000338
ORF1ab/nsp31285S1285FtCttTt33AY.16.10.00141
ORF1ab/nsp31285S1285FtCttTt33AY.240.001293
ORF1ab/nsp31285S1285delTCT---33AY.250.000018
ORF1ab/nsp31285S1285PTctCct33AY.250.000018
ORF1ab/nsp31285S1285FtCttTt33AY.270.000194
ORF1ab/nsp31285S1285FtCttTt33AY.320.001597
ORF1ab/nsp31285S1285PTctCct33AY.40.000005
ORF1ab/nsp31285S1285FtCttTt33AY.4.40.001227
ORF1ab/nsp31285S1285StcTtcC23AY.430.000009
ORF1ab/nsp31285S1285StcTtcG13AY.430.000004
ORF1ab/nsp31285S1285PTctCct33AY.46.60.000217
ORF1ab/nsp31285S1285FtCttTt33AY.590.001589
ORF1ab/nsp31285S1285FtCttTt33AY.680.000821
ORF1ab/nsp31285S1285FtCttTt33AY.690.00056
ORF1ab/nsp31285S1285FtCttTt33AY.710.001425
ORF1ab/nsp31285S1285FtCttTt33AY.740.000347
ORF1ab/nsp31285S1285StcTtcC33AY.9.10.000251
ORF1ab/nsp31285S1285FtCttTt33AY.9.20.00011
ORF1ab/nsp31285S1285FtCttTt33AY.99.20.000276
ORF1ab/nsp31285S1285YtCttAt33B.10.000027
ORF1ab/nsp31285S1285StcTtcC23B.10.000018
ORF1ab/nsp31285S1285StcTtcA13B.10.000009
ORF1ab/nsp31285S1285FtCttTt33B.1.1.1150.026786
ORF1ab/nsp31285S1285FtCttTt33B.1.1.250.001706
ORF1ab/nsp31285S1285FtCttTt33B.1.1.2630.004673
ORF1ab/nsp31285S1285FtCttTt33B.1.1.3160.002775
ORF1ab/nsp31285S1285FtCttTt33B.1.1.370.000579
ORF1ab/nsp31285S1285StcTtcC33B.1.1.4200.003018
ORF1ab/nsp31285S1285FtCttTt33B.1.110.30.002155
ORF1ab/nsp31285S1285StcTtcA23B.1.1600.000062
ORF1ab/nsp31285S1285StcTtcC13B.1.1600.000031
ORF1ab/nsp31285S1285StcTtcG33B.1.1770.00004
ORF1ab/nsp31285S1285FtCttTt33B.1.177.40.000633
ORF1ab/nsp31285S1285FtCttTt33B.1.177.570.000843
ORF1ab/nsp31285S1285StcTtcC33B.1.20.000026
ORF1ab/nsp31285S1285FtCttTt33B.1.2980.006342
ORF1ab/nsp31285S1285FtCttTt33B.1.351.20.000908
ORF1ab/nsp31285S1285delTCT---33B.1.36.170.001482
ORF1ab/nsp31285S1285FtCttTt33B.1.438.10.000322
ORF1ab/nsp31285S1285FtCttTt33B.1.5240.004219
ORF1ab/nsp31285S1285FtCttTt33B.1.5640.001278
ORF1ab/nsp31285S1285FtCttTt33B.1.60.051724
ORF1ab/nsp31285S1285YtCttAt33B.1.617.20.000011
ORF1ab/nsp31285S1285FtCttTt33C.360.002732
ORF1ab/nsp31285S1285delTCT---33P.10.000047
ORF1ab/nsp31285S1285FtCttTt33P.1.70.000958
ORF1ab/nsp31285S1285FtCttTt33P.40.011407
ORF1ab/nsp31285S1285CtCTtGC220.111111
ORF1ab/nsp31285S1285FtCttTt220.111111
ORF1ab/nsp31285S1285ATctGct220.111111
ORF1ab/nsp31285S1285VTCTGTC220.111111
ORF1ab/nsp31285S1285FtCttTt22A.280.005291
ORF1ab/nsp31285S1285VTCTGTC22All0
ORF1ab/nsp31285S1285FtCttTt22AY.100.00106
ORF1ab/nsp31285S1285PTctCct22AY.1020.000053
ORF1ab/nsp31285S1285FtCttTt22AY.1160.000574
ORF1ab/nsp31285S1285FtCttTt22AY.120.000632
ORF1ab/nsp31285S1285delTCT---22AY.190.002281
ORF1ab/nsp31285S1285StcTtcA22AY.250.000012
ORF1ab/nsp31285S1285PTctCct22AY.4.20.000043
ORF1ab/nsp31285S1285FtCttTt22AY.4.30.001684
ORF1ab/nsp31285S1285del1tCtt-t22AY.440.000012
ORF1ab/nsp31285S1285FtCttTt22AY.46.60.000144
ORF1ab/nsp31285S1285delTCT---22AY.50.000041
ORF1ab/nsp31285S1285delTCT---22AY.5.30.000675
ORF1ab/nsp31285S1285FtCttTt22AY.660.002139
ORF1ab/nsp31285S1285delTCT---22AY.75.10.000361
ORF1ab/nsp31285S1285FtCttTt22AY.770.002255
ORF1ab/nsp31285S1285FtCttTt22AY.790.002421
ORF1ab/nsp31285S1285FtCttTt22AY.880.001768
ORF1ab/nsp31285S1285delTCT---22AY.90.000135
ORF1ab/nsp31285S1285CtCttGt22AY.910.001461
ORF1ab/nsp31285S1285FtCttTt22AY.990.002099
ORF1ab/nsp31285S1285FtCttTt22B0.000256
ORF1ab/nsp31285S1285PTctCct22B.1.10.000036
ORF1ab/nsp31285S1285FtCttTt22B.1.1.1590.009346
ORF1ab/nsp31285S1285YtCttAt22B.1.1.1920.004619
ORF1ab/nsp31285S1285FtCttTt22B.1.1.2430.008163
ORF1ab/nsp31285S1285FtCttTt22B.1.1.2550.006061
ORF1ab/nsp31285S1285FtCttTt22B.1.1.2840.000215
ORF1ab/nsp31285S1285delTCT---22B.1.1.370.000386
ORF1ab/nsp31285S1285FtCttTt22B.1.1.3740.004751
ORF1ab/nsp31285S1285del1tcTtc-12B.1.1.70.000001
ORF1ab/nsp31285S1285del1Tct-ct12B.1.1.70.000001
ORF1ab/nsp31285S1285CtCttGt22B.1.1600.000062
ORF1ab/nsp31285S1285delTCT---22B.1.1600.000062
ORF1ab/nsp31285S1285StcTtcC22B.1.177.120.000303
ORF1ab/nsp31285S1285FtCttTt22B.1.177.190.002861
ORF1ab/nsp31285S1285FtCttTt22B.1.177.360.032258
ORF1ab/nsp31285S1285delTCT---22B.1.177.40.000422
ORF1ab/nsp31285S1285FtCttTt22B.1.177.430.002954
ORF1ab/nsp31285S1285FtCttTt22B.1.177.460.001837
ORF1ab/nsp31285S1285FtCttTt22B.1.177.600.000437
ORF1ab/nsp31285S1285delTCT---22B.1.177.70.00033
ORF1ab/nsp31285S1285FtCttTt22B.1.177.800.003824
ORF1ab/nsp31285S1285FtCttTt22B.1.177.90.002663
ORF1ab/nsp31285S1285del1tCtt-t22B.1.20.000018
ORF1ab/nsp31285S1285TTctAct22B.1.20.000018
ORF1ab/nsp31285S1285YtCttAt22B.1.20.000018
ORF1ab/nsp31285S1285FtCttTt22B.1.2400.000431
ORF1ab/nsp31285S1285ATctGct22B.1.258.110.000793
ORF1ab/nsp31285S1285FtCttTt22B.1.3050.004301
ORF1ab/nsp31285S1285FtCttTt22B.1.3110.000549
ORF1ab/nsp31285S1285FtCttTt22B.1.3490.00143
ORF1ab/nsp31285S1285FtCttTt22B.1.3600.025316
ORF1ab/nsp31285S1285FtCttTt22B.1.3690.00057
ORF1ab/nsp31285S1285FtCttTt22B.1.3750.001639
ORF1ab/nsp31285S1285FtCttTt22B.1.3810.015625
ORF1ab/nsp31285S1285FtCttTt22B.1.4040.002604
ORF1ab/nsp31285S1285FtCttTt22B.1.4160.002538
ORF1ab/nsp31285S1285FtCttTt22B.1.4990.002101
ORF1ab/nsp31285S1285FtCttTt22B.1.5610.000794
ORF1ab/nsp31285S1285FtCttTt22B.1.5650.001621
ORF1ab/nsp31285S1285FtCttTt22B.1.575.20.009615
ORF1ab/nsp31285S1285FtCttTt22B.1.5950.000522
ORF1ab/nsp31285S1285FtCttTt22B.1.6020.013072
ORF1ab/nsp31285S1285TTctAct22B.1.617.20.000008
ORF1ab/nsp31285S1285PTctCct22B.1.617.20.000008
ORF1ab/nsp31285S1285FtCttTt22B.1.6280.000705
ORF1ab/nsp31285S1285FtCttTt22B.1.6320.013423
ORF1ab/nsp31285S1285StcTtcC22B.1.6370.000146
ORF1ab/nsp31285S1285FtCttTt22B.280.006557
ORF1ab/nsp31285S1285FtCttTt22B.60.00182
ORF1ab/nsp31285S1285StcTtcC22C.300.003454
ORF1ab/nsp31285S1285FtCttTt22N.50.003534
ORF1ab/nsp31285S1285YtCttAt22P.10.000032
ORF1ab/nsp31285S1285StcTtcC22P.1.170.000324
ORF1ab/nsp31285S1285YtCttAt11A0.000387
ORF1ab/nsp31285S1285FtCttTt11A0.000387
ORF1ab/nsp31285S1285delTCT---11AD.20.000219
ORF1ab/nsp31285S1285FtCttTt11AH.20.012048
ORF1ab/nsp31285S1285del2TCt--t11All0
ORF1ab/nsp31285S1285LTCTCTG11All0
ORF1ab/nsp31285S1285PTctCct11AS.10.009524
ORF1ab/nsp31285S1285delTCT---11AY.10.000396
ORF1ab/nsp31285S1285FtCttTt11AY.10.000396
ORF1ab/nsp31285S1285StcTtcC11AY.1020.000027
ORF1ab/nsp31285S1285FtCttTt11AY.1040.001984
ORF1ab/nsp31285S1285FtCttTt11AY.1060.000335
ORF1ab/nsp31285S1285FtCttTt11AY.1080.001103
ORF1ab/nsp31285S1285FtCttTt11AY.1110.000183
ORF1ab/nsp31285S1285StcTtcC11AY.1130.000142
ORF1ab/nsp31285S1285StcTtcC11AY.1190.000035
ORF1ab/nsp31285S1285delTCT---11AY.1200.000037
ORF1ab/nsp31285S1285del1tCtt-t11AY.120.10.000321
ORF1ab/nsp31285S1285FtCttTt11AY.120.20.001285
ORF1ab/nsp31285S1285ATctGct11AY.200.000039
ORF1ab/nsp31285S1285PTctCct11AY.200.000039
ORF1ab/nsp31285S1285FtCttTt11AY.220.002092
ORF1ab/nsp31285S1285StcTtcC11AY.260.000028
ORF1ab/nsp31285S1285StcTtcA11AY.270.000065
ORF1ab/nsp31285S1285FtCttTt11AY.280.00189
ORF1ab/nsp31285S1285FtCttTt11AY.29.10.000221
ORF1ab/nsp31285S1285LTCTCTG11AY.30.00001
ORF1ab/nsp31285S1285PTctCct11AY.30.00001
ORF1ab/nsp31285S1285FtCttTt11AY.300.000396
ORF1ab/nsp31285S1285ATctGct11AY.330.000067
ORF1ab/nsp31285S1285delTCT---11AY.330.000067
ORF1ab/nsp31285S1285PTctCct11AY.330.000067
ORF1ab/nsp31285S1285TTctAct11AY.34.10.00051
ORF1ab/nsp31285S1285YtCttAt11AY.350.000233
ORF1ab/nsp31285S1285ATctGct11AY.360.000148
ORF1ab/nsp31285S1285CtCttGt11AY.390.000025
ORF1ab/nsp31285S1285TTctAct11AY.40.000002
ORF1ab/nsp31285S1285ATctGct11AY.4.20.000022
ORF1ab/nsp31285S1285FtCttTt11AY.4.2.10.000149
ORF1ab/nsp31285S1285FtCttTt11AY.400.000964
ORF1ab/nsp31285S1285YtCttAt11AY.430.000004
ORF1ab/nsp31285S1285PTctCct11AY.430.000004
ORF1ab/nsp31285S1285CtCttGt11AY.430.000004
ORF1ab/nsp31285S1285StcTtcC11AY.440.000006
ORF1ab/nsp31285S1285delTCT---11AY.460.000104
ORF1ab/nsp31285S1285CtCttGt11AY.460.000104
ORF1ab/nsp31285S1285FtCttTt11AY.46.10.001027
ORF1ab/nsp31285S1285delTCT---11AY.46.20.000635
ORF1ab/nsp31285S1285delTCT---11AY.470.000031
ORF1ab/nsp31285S1285PTctCct11AY.470.000031
ORF1ab/nsp31285S1285StcTtcC11AY.470.000031
ORF1ab/nsp31285S1285FtCttTt11AY.480.000465
ORF1ab/nsp31285S1285PTctCct11AY.50.000021
ORF1ab/nsp31285S1285YtCttAt11AY.5.30.000337
ORF1ab/nsp31285S1285FtCttTt11AY.5.30.000337
ORF1ab/nsp31285S1285FtCttTt11AY.5.40.000277
ORF1ab/nsp31285S1285FtCttTt11AY.510.000909
ORF1ab/nsp31285S1285CtCttGt11AY.540.000095
ORF1ab/nsp31285S1285FtCttTt11AY.550.000917
ORF1ab/nsp31285S1285ATctGct11AY.550.000917
ORF1ab/nsp31285S1285FtCttTt11AY.560.001605
ORF1ab/nsp31285S1285FtCttTt11AY.580.000907
ORF1ab/nsp31285S1285delTCT---11AY.590.00053
ORF1ab/nsp31285S1285delTCT---11AY.60.000041
ORF1ab/nsp31285S1285delTCT---11AY.600.000938
ORF1ab/nsp31285S1285TTcTAcG11AY.670.000464
ORF1ab/nsp31285S1285FtCttTt11AY.670.000464
ORF1ab/nsp31285S1285FtCttTt11AY.70.000196
ORF1ab/nsp31285S1285StcTtcC11AY.700.000209
ORF1ab/nsp31285S1285PTctCct11AY.710.000475
ORF1ab/nsp31285S1285FtCttTt11AY.720.001361
ORF1ab/nsp31285S1285PTctCct11AY.75.10.00018
ORF1ab/nsp31285S1285delTCT---11AY.840.000437
ORF1ab/nsp31285S1285FtCttTt11AY.870.000833
ORF1ab/nsp31285S1285FtCttTt11AY.890.004902
ORF1ab/nsp31285S1285FtCttTt11AY.900.000684
ORF1ab/nsp31285S1285FtCttTt11AY.940.000443
ORF1ab/nsp31285S1285StcTtcC11AY.990.001049
ORF1ab/nsp31285S1285TTcTAcC11AY.990.001049
ORF1ab/nsp31285S1285PTctCct11B.10.000009
ORF1ab/nsp31285S1285FtCttTt11B.1.1.10.000327
ORF1ab/nsp31285S1285FtCttTt11B.1.1.100.001115
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1290.009174
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1410.002012
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1520.04
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1610.003534
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1640.005155
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1860.003436
ORF1ab/nsp31285S1285FtCttTt11B.1.1.1890.001513
ORF1ab/nsp31285S1285PTctCct11B.1.1.1960.005714
ORF1ab/nsp31285S1285ATctGct11B.1.1.2140.000055
ORF1ab/nsp31285S1285delTCT---11B.1.1.2210.010101
ORF1ab/nsp31285S1285FtCttTt11B.1.1.2210.010101
ORF1ab/nsp31285S1285FtCttTt11B.1.1.2650.003155
ORF1ab/nsp31285S1285FtCttTt11B.1.1.270.00565
ORF1ab/nsp31285S1285FtCttTt11B.1.1.2720.005208
ORF1ab/nsp31285S1285FtCttTt11B.1.1.2730.006757
ORF1ab/nsp31285S1285delTCT---11B.1.1.2790.001121
ORF1ab/nsp31285S1285FtCttTt11B.1.1.2880.001916
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3010.001179
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3110.000358
ORF1ab/nsp31285S1285delTCT---11B.1.1.3110.000358
ORF1ab/nsp31285S1285delTCT---11B.1.1.3120.001912
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3120.001912
ORF1ab/nsp31285S1285YtCttAt11B.1.1.3170.000412
ORF1ab/nsp31285S1285FtCttTt11B.1.1.330.000421
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3400.045455
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3480.000796
ORF1ab/nsp31285S1285delTCT---11B.1.1.3480.000796
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3490.010309
ORF1ab/nsp31285S1285delTCT---11B.1.1.3610.045455
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3680.003086
ORF1ab/nsp31285S1285FtCttTt11B.1.1.3690.000446
ORF1ab/nsp31285S1285TTctAct11B.1.1.3690.000446
ORF1ab/nsp31285S1285ATctGct11B.1.1.370.000193
ORF1ab/nsp31285S1285delTCT---11B.1.1.390.00051
ORF1ab/nsp31285S1285FtCttTt11B.1.1.4060.006494
ORF1ab/nsp31285S1285delTCT---11B.1.1.4090.002833
ORF1ab/nsp31285S1285YtCttAt11B.1.1.4090.002833
ORF1ab/nsp31285S1285delTCT---11B.1.1.440.00241
ORF1ab/nsp31285S1285YtCttAt11B.1.1.4480.002033
ORF1ab/nsp31285S1285StcTtcC11B.1.1.5190.00004
ORF1ab/nsp31285S1285YtCttAt11B.1.1.5190.00004
ORF1ab/nsp31285S1285FtCttTt11B.1.1.5230.001563
ORF1ab/nsp31285S1285FtCttTt11B.1.1.580.005376
ORF1ab/nsp31285S1285FtCttTt11B.1.1.630.000386
ORF1ab/nsp31285S1285del2TCt--t11B.1.1.70.000001
ORF1ab/nsp31285S1285FtCttTt11B.1.1.980.018519
ORF1ab/nsp31285S1285FtCttTt11B.1.1110.001175
ORF1ab/nsp31285S1285FtCttTt11B.1.1390.000733
ORF1ab/nsp31285S1285FtCttTt11B.1.1460.004237
ORF1ab/nsp31285S1285FtCttTt11B.1.1570.002985
ORF1ab/nsp31285S1285YtCttAt11B.1.1600.000031
ORF1ab/nsp31285S1285FtCttTt11B.1.160.160.000929
ORF1ab/nsp31285S1285FtCttTt11B.1.160.90.007194
ORF1ab/nsp31285S1285delTCT---11B.1.177.110.001698
ORF1ab/nsp31285S1285delTCT---11B.1.177.150.000631
ORF1ab/nsp31285S1285FtCttTt11B.1.177.150.000631
ORF1ab/nsp31285S1285FtCttTt11B.1.177.160.000664
ORF1ab/nsp31285S1285delTCT---11B.1.177.170.000821
ORF1ab/nsp31285S1285FtCttTt11B.1.177.290.066667
ORF1ab/nsp31285S1285FtCttTt11B.1.177.320.00135
ORF1ab/nsp31285S1285delTCT---11B.1.177.350.000691
ORF1ab/nsp31285S1285FtCttTt11B.1.177.380.010417
ORF1ab/nsp31285S1285FtCttTt11B.1.177.420.000894
ORF1ab/nsp31285S1285FtCttTt11B.1.177.50.001242
ORF1ab/nsp31285S1285delTCT---11B.1.177.510.004566
ORF1ab/nsp31285S1285delTCT---11B.1.177.520.001757
ORF1ab/nsp31285S1285delTCT---11B.1.177.560.000668
ORF1ab/nsp31285S1285FtCttTt11B.1.177.580.001332
ORF1ab/nsp31285S1285delTCT---11B.1.177.600.000218
ORF1ab/nsp31285S1285FtCttTt11B.1.177.620.001192
ORF1ab/nsp31285S1285delTCT---11B.1.177.630.002703
ORF1ab/nsp31285S1285FtCttTt11B.1.177.670.007634
ORF1ab/nsp31285S1285FtCttTt11B.1.177.70.000165
ORF1ab/nsp31285S1285FtCttTt11B.1.177.810.000189
ORF1ab/nsp31285S1285StcTtcA11B.1.177.810.000189
ORF1ab/nsp31285S1285FtCttTt11B.1.177.820.000477
ORF1ab/nsp31285S1285FtCttTt11B.1.177.860.000183
ORF1ab/nsp31285S1285FtCttTt11B.1.177.870.000728
ORF1ab/nsp31285S1285delTCT---11B.1.177.870.000728
ORF1ab/nsp31285S1285delTCT---11B.1.177.90.001332
ORF1ab/nsp31285S1285FtCttTt11B.1.1890.004292
ORF1ab/nsp31285S1285delTCT---11B.1.20.000009
ORF1ab/nsp31285S1285FtCttTt11B.1.2060.000816
ORF1ab/nsp31285S1285StcTtcC11B.1.2100.002132
ORF1ab/nsp31285S1285FtCttTt11B.1.2100.002132
ORF1ab/nsp31285S1285delTCT---11B.1.221.10.002907
ORF1ab/nsp31285S1285FtCttTt11B.1.221.10.002907
ORF1ab/nsp31285S1285FtCttTt11B.1.2320.000537
ORF1ab/nsp31285S1285PTctCct11B.1.2400.000216
ORF1ab/nsp31285S1285FtCttTt11B.1.2410.000812
ORF1ab/nsp31285S1285ATctGct11B.1.2520.006623
ORF1ab/nsp31285S1285delTCT---11B.1.2580.000067
ORF1ab/nsp31285S1285delTCT---11B.1.258.100.011364
ORF1ab/nsp31285S1285StcTtcC11B.1.258.170.000104
ORF1ab/nsp31285S1285FtCttTt11B.1.258.20.004505
ORF1ab/nsp31285S1285FtCttTt11B.1.2600.003344
ORF1ab/nsp31285S1285ATctGct11B.1.3110.000275
ORF1ab/nsp31285S1285FtCttTt11B.1.3400.004292
ORF1ab/nsp31285S1285delTCT---11B.1.3490.000715
ORF1ab/nsp31285S1285PTctCct11B.1.3510.00003
ORF1ab/nsp31285S1285YtCttAt11B.1.3510.00003
ORF1ab/nsp31285S1285FtCttTt11B.1.351.30.000876
ORF1ab/nsp31285S1285ATctGct11B.1.3560.001727
ORF1ab/nsp31285S1285PTctCct11B.1.360.000146
ORF1ab/nsp31285S1285FtCttTt11B.1.36.10.00114
ORF1ab/nsp31285S1285FtCttTt11B.1.36.180.00042
ORF1ab/nsp31285S1285delTCT---11B.1.36.180.00042
ORF1ab/nsp31285S1285YtCttAt11B.1.36.200.016949
ORF1ab/nsp31285S1285del1tCtt-t11B.1.36.390.002217
ORF1ab/nsp31285S1285FtCttTt11B.1.36.70.004
ORF1ab/nsp31285S1285FtCttTt11B.1.3620.001541
ORF1ab/nsp31285S1285FtCttTt11B.1.3670.000792
ORF1ab/nsp31285S1285FtCttTt11B.1.3780.006849
ORF1ab/nsp31285S1285FtCttTt11B.1.3880.090909
ORF1ab/nsp31285S1285delTCT---11B.1.3890.001002
ORF1ab/nsp31285S1285FtCttTt11B.1.3960.000706
ORF1ab/nsp31285S1285FtCttTt11B.1.4000.000429
ORF1ab/nsp31285S1285PTctCct11B.1.4000.000429
ORF1ab/nsp31285S1285FtCttTt11B.1.400.10.015152
ORF1ab/nsp31285S1285delTCT---11B.1.4090.000781
ORF1ab/nsp31285S1285FtCttTt11B.1.4280.00102
ORF1ab/nsp31285S1285FtCttTt11B.1.428.30.012821
ORF1ab/nsp31285S1285FtCttTt11B.1.4350.011364
ORF1ab/nsp31285S1285FtCttTt11B.1.4480.002625
ORF1ab/nsp31285S1285FtCttTt11B.1.4590.004082
ORF1ab/nsp31285S1285FtCttTt11B.1.466.20.000391
ORF1ab/nsp31285S1285FtCttTt11B.1.4680.005714
ORF1ab/nsp31285S1285FtCttTt11B.1.4710.002732
ORF1ab/nsp31285S1285FtCttTt11B.1.4730.019231
ORF1ab/nsp31285S1285FtCttTt11B.1.4970.000315
ORF1ab/nsp31285S1285FtCttTt11B.1.5030.002488
ORF1ab/nsp31285S1285FtCttTt11B.1.5090.000866
ORF1ab/nsp31285S1285PTctCct11B.1.5170.000427
ORF1ab/nsp31285S1285FtCttTt11B.1.5210.004975
ORF1ab/nsp31285S1285delTCT---11B.1.5250.000113
ORF1ab/nsp31285S1285CtCttGt11B.1.5260.000024
ORF1ab/nsp31285S1285FtCttTt11B.1.5750.000303
ORF1ab/nsp31285S1285FtCttTt11B.1.5760.000907
ORF1ab/nsp31285S1285delTCT---11B.1.5850.027778
ORF1ab/nsp31285S1285PTctCct11B.1.5960.000087
ORF1ab/nsp31285S1285FtCttTt11B.1.6090.000479
ORF1ab/nsp31285S1285FtCttTt11B.1.6120.002653
ORF1ab/nsp31285S1285delTCT---11B.1.617.30.002985
ORF1ab/nsp31285S1285StcTtcA11B.1.619.10.000641
ORF1ab/nsp31285S1285FtCttTt11B.1.6200.000946
ORF1ab/nsp31285S1285delTCT---11B.1.6210.000089
ORF1ab/nsp31285S1285YtCttAt11B.1.6210.000089
ORF1ab/nsp31285S1285delTCT---11B.1.6300.005236
ORF1ab/nsp31285S1285FtCttTt11B.30.000831
ORF1ab/nsp31285S1285delTCT---11B.340.013699
ORF1ab/nsp31285S1285FtCttTt11B.40.002208
ORF1ab/nsp31285S1285FtCttTt11B.450.003831
ORF1ab/nsp31285S1285FtCttTt11B.500.111111
ORF1ab/nsp31285S1285delTCT---11B.550.00295
ORF1ab/nsp31285S1285FtCttTt11B.560.028571
ORF1ab/nsp31285S1285TTcTAcC11C.350.000774
ORF1ab/nsp31285S1285FtCttTt11D.20.000075
ORF1ab/nsp31285S1285CtCttGt11P.10.000016
ORF1ab/nsp31285S1285delTCT---11P.1.150.000232
ORF1ab/nsp31285S1285FtCttTt11P.1.160.000374
ORF1ab/nsp31285S1285ATctGct11P.1.170.000162
ORF1ab/nsp31285S1285FtCttTt11P.30.001595
ORF1ab/nsp31285S1285delTCT---11Q.10.000126
ORF1ab/nsp31285S1285CtCttGt11Q.40.000455
ORF1ab/nsp31285S1285FtCttTt11Q.70.001111
ORF1ab/nsp31285S1285delTCT---11U.30.003861
ORF1ab/nsp31285S1285delTCT---11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.