CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1283

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31283D1283DD2101DsyngaCgaT8694869416566-6568
ORF1ab/nsp31283D1283YD2101YnonsynGacTac131913180.9992426566-6568
ORF1ab/nsp31283D1283YD2101YnonsynGaCTaT131910.000758156566-6568
ORF1ab/nsp31283D1283ND2101NnonsynGacAac35135116566-6568
ORF1ab/nsp31283D1283delD2101deldelGAC---27827816566-6568
ORF1ab/nsp31283D1283ED2101EnonsyngaCgaA90860.9555566566-6568
ORF1ab/nsp31283D1283ED2101EnonsyngaCgaG9040.04444446566-6568
ORF1ab/nsp31283D1283GD2101GnonsyngAcgGc797916566-6568
ORF1ab/nsp31283D1283HD2101HnonsynGacCac48460.9583336566-6568
ORF1ab/nsp31283D1283HD2101HnonsynGaCCaT4820.04166676566-6568
ORF1ab/nsp31283D1283VD2101VnonsyngAcgTc44430.9772736566-6568
ORF1ab/nsp31283D1283VD2101VnonsyngACgTA4410.02272736566-6568
ORF1ab/nsp31283D1283AD2101AnonsyngAcgCc202016566-6568
ORF1ab/nsp31283D1283KD2101KnonsynGaCAaA2216566-6568
ORF1ab/nsp31283D1283QD2101QnonsynGaCCaA2216566-6568
ORF1ab/nsp31283D1283del2D2101del2delgACg--2216566-6568
ORF1ab/nsp31283D1283del1D2101del1delGac-ac210.56566-6568
ORF1ab/nsp31283D1283del1D2101del1delgaCga-210.56566-6568
ORF1ab/nsp31283D1283SD2101SnonsynGAcAGc1116566-6568
ORF1ab/nsp31283D1283PD2101PnonsynGAcCCc1116566-6568
ORF1ab/nsp31283D1283FD2101FnonsynGACTTT1116566-6568
ORF1ab/nsp31283D1283LD2101LnonsynGACTTG1116566-6568

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31283D1283DgaCgaT86948694All0.001663
ORF1ab/nsp31283D1283DgaCgaT50335033Q.30.729949
ORF1ab/nsp31283D1283YGacTac13181319All0.000252
ORF1ab/nsp31283D1283YGaCTaT11319All0
ORF1ab/nsp31283D1283DgaCgaT799799B.1.1.70.000715
ORF1ab/nsp31283D1283DgaCgaT697697AY.40.001085
ORF1ab/nsp31283D1283YGacTac493494B.1.1.70.000441
ORF1ab/nsp31283D1283YGaCTaT1494B.1.1.70.000001
ORF1ab/nsp31283D1283NGacAac351351All0.000067
ORF1ab/nsp31283D1283delGAC---278278All0.000053
ORF1ab/nsp31283D1283DgaCgaT257257B.1.4290.006047
ORF1ab/nsp31283D1283DgaCgaT217217B.1.617.20.000817
ORF1ab/nsp31283D1283delGAC---126126B.1.1.70.000113
ORF1ab/nsp31283D1283NGacAac120120AY.1030.000745
ORF1ab/nsp31283D1283DgaCgaT117117B.1.1770.001541
ORF1ab/nsp31283D1283DgaCgaT102102AY.1000.004693
ORF1ab/nsp31283D1283DgaCgaT101101P.10.001591
ORF1ab/nsp31283D1283YGacTac9595AY.40.000148
ORF1ab/nsp31283D1283EgaCgaA8690All0.000016
ORF1ab/nsp31283D1283EgaCgaG490All0.000001
ORF1ab/nsp31283D1283YGacTac8282AY.440.000499
ORF1ab/nsp31283D1283YGacTac8181B.1.5260.001904
ORF1ab/nsp31283D1283GgAcgGc7979All0.000015
ORF1ab/nsp31283D1283NGacAac7272AY.10.028492
ORF1ab/nsp31283D1283DgaCgaT7171B.1.1.5190.002819
ORF1ab/nsp31283D1283YGacTac6565B.1.1.700.022169
ORF1ab/nsp31283D1283DgaCgaT6161B.10.000559
ORF1ab/nsp31283D1283YGacTac6161B.1.617.20.00023
ORF1ab/nsp31283D1283YGacTac5858AY.540.00553
ORF1ab/nsp31283D1283DgaCgaT5858B.1.20.000511
ORF1ab/nsp31283D1283DgaCgaT5858B.1.36.360.034919
ORF1ab/nsp31283D1283DgaCgaT5757AY.1030.000354
ORF1ab/nsp31283D1283NGacAac5252B.1.1.70.000047
ORF1ab/nsp31283D1283DgaCgaT5050B.1.5260.001175
ORF1ab/nsp31283D1283HGacCac4648All0.000009
ORF1ab/nsp31283D1283HGaCCaT248All0
ORF1ab/nsp31283D1283VgAcgTc4344All0.000008
ORF1ab/nsp31283D1283VgACgTA144All0
ORF1ab/nsp31283D1283DgaCgaT4343AY.250.000259
ORF1ab/nsp31283D1283DgaCgaT4343AY.430.000191
ORF1ab/nsp31283D1283YGacTac4141AY.1190.001448
ORF1ab/nsp31283D1283DgaCgaT3939B.1.10.000707
ORF1ab/nsp31283D1283HGacCac3939B.1.1.70.000035
ORF1ab/nsp31283D1283DgaCgaT3939B.1.2580.002595
ORF1ab/nsp31283D1283DgaCgaT3838AY.1020.001008
ORF1ab/nsp31283D1283DgaCgaT3838B.1.1600.001185
ORF1ab/nsp31283D1283VgAcgTc3838B.1.5960.003311
ORF1ab/nsp31283D1283DgaCgaT3535AY.200.00136
ORF1ab/nsp31283D1283DgaCgaT3030AY.230.002092
ORF1ab/nsp31283D1283EgaCgaA2627B.1.1.70.000023
ORF1ab/nsp31283D1283EgaCgaG127B.1.1.70.000001
ORF1ab/nsp31283D1283YGacTac2626AY.430.000115
ORF1ab/nsp31283D1283DgaCgaT2424AY.46.50.004762
ORF1ab/nsp31283D1283YGacTac2323AY.1030.000143
ORF1ab/nsp31283D1283YGacTac2323AY.4.50.002472
ORF1ab/nsp31283D1283DgaCgaT2323AY.440.00014
ORF1ab/nsp31283D1283delGAC---2323B.1.1770.000303
ORF1ab/nsp31283D1283DgaCgaT2222P.20.004106
ORF1ab/nsp31283D1283DgaCgaT2121B.1.177.810.003976
ORF1ab/nsp31283D1283DgaCgaT2121P.1.140.001004
ORF1ab/nsp31283D1283AgAcgCc2020All0.000004
ORF1ab/nsp31283D1283DgaCgaT2020B.1.5960.001743
ORF1ab/nsp31283D1283delGAC---1919AY.40.00003
ORF1ab/nsp31283D1283NGacAac1919B.1.20.000167
ORF1ab/nsp31283D1283DgaCgaT1818AY.390.000445
ORF1ab/nsp31283D1283NGacAac1818AY.40.000028
ORF1ab/nsp31283D1283DgaCgaT1818B.1.2430.001253
ORF1ab/nsp31283D1283DgaCgaT1717AY.30.000169
ORF1ab/nsp31283D1283DgaCgaT1717AY.420.000684
ORF1ab/nsp31283D1283DgaCgaT1717B.1.221.20.068273
ORF1ab/nsp31283D1283DgaCgaT1616AY.150.035556
ORF1ab/nsp31283D1283YGacTac1616B.10.000147
ORF1ab/nsp31283D1283DgaCgaT1616C.370.001857
ORF1ab/nsp31283D1283YGacTac1515AY.1020.000398
ORF1ab/nsp31283D1283DgaCgaT1515AY.340.001454
ORF1ab/nsp31283D1283DgaCgaT1515B.1.177.600.003277
ORF1ab/nsp31283D1283DgaCgaT1414Q.80.002309
ORF1ab/nsp31283D1283YGacTac1313AY.30.000129
ORF1ab/nsp31283D1283DgaCgaT1313AY.750.000728
ORF1ab/nsp31283D1283DgaCgaT1313AY.830.022414
ORF1ab/nsp31283D1283YGacTac1313B.1.1.5190.000516
ORF1ab/nsp31283D1283YGacTac1313Q.80.002144
ORF1ab/nsp31283D1283GgAcgGc1212AY.1030.000075
ORF1ab/nsp31283D1283YGacTac1212AY.470.000373
ORF1ab/nsp31283D1283DgaCgaT1111AY.470.000342
ORF1ab/nsp31283D1283DgaCgaT1111B.1.1.1471
ORF1ab/nsp31283D1283DgaCgaT1111B.1.1.1590.051402
ORF1ab/nsp31283D1283DgaCgaT1111B.1.3510.000327
ORF1ab/nsp31283D1283NGacAac1111P.10.000173
ORF1ab/nsp31283D1283EgaCgaA1010AY.60.000411
ORF1ab/nsp31283D1283EgaCgaA1010B.1.617.20.000038
ORF1ab/nsp31283D1283YGacTac1010C.160.010604
ORF1ab/nsp31283D1283delGAC---99AY.4.50.000967
ORF1ab/nsp31283D1283delGAC---99AY.430.00004
ORF1ab/nsp31283D1283DgaCgaT99AY.50.000186
ORF1ab/nsp31283D1283DgaCgaT99B.1.360.001313
ORF1ab/nsp31283D1283EgaCgaA88AY.1000.000368
ORF1ab/nsp31283D1283DgaCgaT88AY.1050.005145
ORF1ab/nsp31283D1283GgAcgGc88AY.140.000704
ORF1ab/nsp31283D1283YGacTac88AY.250.000048
ORF1ab/nsp31283D1283DgaCgaT88AY.330.000534
ORF1ab/nsp31283D1283GgAcgGc88AY.40.000012
ORF1ab/nsp31283D1283DgaCgaT88AY.4.20.000174
ORF1ab/nsp31283D1283delGAC---88B.10.000073
ORF1ab/nsp31283D1283NGacAac88B.1.3690.002282
ORF1ab/nsp31283D1283DgaCgaT77AY.1210.000947
ORF1ab/nsp31283D1283EgaCgaA77AY.250.000042
ORF1ab/nsp31283D1283DgaCgaT77AY.260.000198
ORF1ab/nsp31283D1283NGacAac77AY.430.000031
ORF1ab/nsp31283D1283YGacTac77AY.740.00081
ORF1ab/nsp31283D1283YGacTac77B.1.10.000127
ORF1ab/nsp31283D1283NGacAac77B.1.10.000127
ORF1ab/nsp31283D1283EgaCgaA77B.1.1.630.002701
ORF1ab/nsp31283D1283GgAcgGc77B.1.1.70.000006
ORF1ab/nsp31283D1283DgaCgaT77B.1.2400.001509
ORF1ab/nsp31283D1283DgaCgaT77B.1.3110.001922
ORF1ab/nsp31283D1283DgaCgaT77B.1.6370.000512
ORF1ab/nsp31283D1283DgaCgaT66AY.290.000095
ORF1ab/nsp31283D1283YGacTac66AY.340.000582
ORF1ab/nsp31283D1283DgaCgaT66AY.60.000247
ORF1ab/nsp31283D1283YGacTac66AY.90.000406
ORF1ab/nsp31283D1283DgaCgaT66B.1.1.2140.000333
ORF1ab/nsp31283D1283YGacTac66B.1.1.3550.092308
ORF1ab/nsp31283D1283YGacTac66B.1.20.000053
ORF1ab/nsp31283D1283DgaCgaT66B.1.3460.007864
ORF1ab/nsp31283D1283DgaCgaT66B.1.36.220.007246
ORF1ab/nsp31283D1283NGacAac66B.1.617.20.000023
ORF1ab/nsp31283D1283delGAC---66B.1.617.20.000023
ORF1ab/nsp31283D1283DgaCgaT66N.50.010601
ORF1ab/nsp31283D1283DgaCgaT55AY.1190.000177
ORF1ab/nsp31283D1283GgAcgGc55AY.30.00005
ORF1ab/nsp31283D1283YGacTac55AY.39.10.000198
ORF1ab/nsp31283D1283GgAcgGc55AY.430.000022
ORF1ab/nsp31283D1283GgAcgGc55AY.440.00003
ORF1ab/nsp31283D1283YGacTac55AY.50.000103
ORF1ab/nsp31283D1283YGacTac55AY.950.003805
ORF1ab/nsp31283D1283DgaCgaT55AY.98.10.000242
ORF1ab/nsp31283D1283YGacTac55AY.99.20.000461
ORF1ab/nsp31283D1283DgaCgaT55B.1.1.3760.029762
ORF1ab/nsp31283D1283YGacTac55B.1.1770.000066
ORF1ab/nsp31283D1283DgaCgaT55B.1.2060.004078
ORF1ab/nsp31283D1283DgaCgaT55B.1.2340.00066
ORF1ab/nsp31283D1283DgaCgaT55B.1.5820.002453
ORF1ab/nsp31283D1283DgaCgaT55B.400.001821
ORF1ab/nsp31283D1283DgaCgaT55D.20.000375
ORF1ab/nsp31283D1283AgAcgCc44AY.1030.000025
ORF1ab/nsp31283D1283DgaCgaT44AY.1200.000149
ORF1ab/nsp31283D1283AgAcgCc44AY.3.10.000341
ORF1ab/nsp31283D1283DgaCgaT44AY.39.10.000158
ORF1ab/nsp31283D1283YGacTac44AY.80.002424
ORF1ab/nsp31283D1283DgaCgaT44AY.930.001092
ORF1ab/nsp31283D1283EgaCgaA34B.10.000027
ORF1ab/nsp31283D1283EgaCgaG14B.10.000009
ORF1ab/nsp31283D1283delGAC---44B.1.10.000073
ORF1ab/nsp31283D1283DgaCgaT44B.1.1.3180.001207
ORF1ab/nsp31283D1283YGacTac44B.1.1.370.000771
ORF1ab/nsp31283D1283YGacTac44B.1.3510.000119
ORF1ab/nsp31283D1283DgaCgaT44B.1.4270.000202
ORF1ab/nsp31283D1283YGacTac44B.1.4270.000202
ORF1ab/nsp31283D1283YGacTac44B.1.6280.001409
ORF1ab/nsp31283D1283DgaCgaT33AD.20.000657
ORF1ab/nsp31283D1283YGacTac33AY.1200.000112
ORF1ab/nsp31283D1283DgaCgaT33AY.120.10.000963
ORF1ab/nsp31283D1283delGAC---33AY.250.000018
ORF1ab/nsp31283D1283YGacTac33AY.350.000699
ORF1ab/nsp31283D1283YGacTac33AY.390.000074
ORF1ab/nsp31283D1283AgAcgCc33AY.40.000005
ORF1ab/nsp31283D1283GgAcgGc33AY.4.20.000065
ORF1ab/nsp31283D1283GgAcgGc33AY.420.000121
ORF1ab/nsp31283D1283DgaCgaT33AY.450.000365
ORF1ab/nsp31283D1283DgaCgaT33AY.46.40.000494
ORF1ab/nsp31283D1283DgaCgaT33AY.90.000203
ORF1ab/nsp31283D1283DgaCgaT33AY.99.20.000276
ORF1ab/nsp31283D1283YGacTac33B.1.1.280.000934
ORF1ab/nsp31283D1283AgAcgCc33B.1.1.70.000003
ORF1ab/nsp31283D1283DgaCgaT33B.1.177.570.000843
ORF1ab/nsp31283D1283DgaCgaT33B.1.177.70.000495
ORF1ab/nsp31283D1283YGacTac33B.1.4090.002344
ORF1ab/nsp31283D1283DgaCgaT33B.1.466.20.001174
ORF1ab/nsp31283D1283DgaCgaT33B.1.5090.002597
ORF1ab/nsp31283D1283DgaCgaT33B.1.5300.021429
ORF1ab/nsp31283D1283DgaCgaT33B.1.5760.00272
ORF1ab/nsp31283D1283YGacTac33P.10.000047
ORF1ab/nsp31283D1283delGAC---33P.10.000047
ORF1ab/nsp31283D1283DgaCgaT33Q.10.000379
ORF1ab/nsp31283D1283KGaCAaA220.111111
ORF1ab/nsp31283D1283HGaCCaT220.111111
ORF1ab/nsp31283D1283NGacAac220.111111
ORF1ab/nsp31283D1283QGaCCaA220.111111
ORF1ab/nsp31283D1283DgaCgaT22A.190.018868
ORF1ab/nsp31283D1283YGacTac22A.2.50.000998
ORF1ab/nsp31283D1283QGaCCaA22All0
ORF1ab/nsp31283D1283KGaCAaA22All0
ORF1ab/nsp31283D1283del2gACg--22All0
ORF1ab/nsp31283D1283del1Gac-ac12All0
ORF1ab/nsp31283D1283del1gaCga-12All0
ORF1ab/nsp31283D1283GgAcgGc22AU.20.004843
ORF1ab/nsp31283D1283DgaCgaT22AY.1040.003968
ORF1ab/nsp31283D1283YGacTac22AY.1170.000169
ORF1ab/nsp31283D1283DgaCgaT22AY.1170.000169
ORF1ab/nsp31283D1283DgaCgaT22AY.160.000759
ORF1ab/nsp31283D1283GgAcgGc22AY.230.000139
ORF1ab/nsp31283D1283DgaCgaT22AY.240.000862
ORF1ab/nsp31283D1283YGacTac22AY.330.000134
ORF1ab/nsp31283D1283NGacAac22AY.330.000134
ORF1ab/nsp31283D1283NGacAac22AY.360.000296
ORF1ab/nsp31283D1283EgaCgaA22AY.40.000003
ORF1ab/nsp31283D1283del2gACg--22AY.40.000003
ORF1ab/nsp31283D1283EgaCgaA22AY.4.20.000043
ORF1ab/nsp31283D1283EgaCgaA22AY.450.000243
ORF1ab/nsp31283D1283YGacTac22AY.450.000243
ORF1ab/nsp31283D1283DgaCgaT22AY.460.000208
ORF1ab/nsp31283D1283delGAC---22AY.50.000041
ORF1ab/nsp31283D1283delGAC---22AY.5.30.000675
ORF1ab/nsp31283D1283DgaCgaT22AY.530.000575
ORF1ab/nsp31283D1283YGacTac22AY.580.001815
ORF1ab/nsp31283D1283DgaCgaT22AY.610.00021
ORF1ab/nsp31283D1283GgAcgGc22AY.7.20.001119
ORF1ab/nsp31283D1283delGAC---22AY.75.10.000361
ORF1ab/nsp31283D1283DgaCgaT22AY.9.10.000167
ORF1ab/nsp31283D1283DgaCgaT22AY.9.20.000073
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.1090.08
ORF1ab/nsp31283D1283EgaCgaA22B.1.1.3060.000877
ORF1ab/nsp31283D1283YGacTac22B.1.1.330.000842
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.3890.012121
ORF1ab/nsp31283D1283DgaCgaT22B.1.1.4090.005666
ORF1ab/nsp31283D1283VgAcgTc22B.1.1.70.000002
ORF1ab/nsp31283D1283YGacTac22B.1.130.004751
ORF1ab/nsp31283D1283YGacTac22B.1.1600.000062
ORF1ab/nsp31283D1283delGAC---22B.1.1600.000062
ORF1ab/nsp31283D1283NGacAac22B.1.1660.016949
ORF1ab/nsp31283D1283DgaCgaT22B.1.177.100.001756
ORF1ab/nsp31283D1283delGAC---22B.1.177.40.000422
ORF1ab/nsp31283D1283DgaCgaT22B.1.177.650.001331
ORF1ab/nsp31283D1283delGAC---22B.1.177.70.00033
ORF1ab/nsp31283D1283YGacTac22B.1.2320.001075
ORF1ab/nsp31283D1283YGacTac22B.1.2580.000133
ORF1ab/nsp31283D1283DgaCgaT22B.1.36.170.000988
ORF1ab/nsp31283D1283delGAC---22B.1.36.170.000988
ORF1ab/nsp31283D1283YGacTac22B.1.3960.001411
ORF1ab/nsp31283D1283DgaCgaT22B.1.4160.002538
ORF1ab/nsp31283D1283DgaCgaT22B.1.5680.002222
ORF1ab/nsp31283D1283DgaCgaT22B.1.5730.012195
ORF1ab/nsp31283D1283DgaCgaT22B.1.5950.000522
ORF1ab/nsp31283D1283DgaCgaT22B.1.6000.011696
ORF1ab/nsp31283D1283DgaCgaT22B.1.6090.000959
ORF1ab/nsp31283D1283HGacCac22B.1.617.20.000008
ORF1ab/nsp31283D1283GgAcgGc22B.1.617.20.000008
ORF1ab/nsp31283D1283YGacTac22B.1.621.10.001012
ORF1ab/nsp31283D1283DgaCgaT22B.1.6230.001073
ORF1ab/nsp31283D1283DgaCgaT22C.80.008929
ORF1ab/nsp31283D1283DgaCgaT22P.1.120.000968
ORF1ab/nsp31283D1283DgaCgaT22P.1.170.000324
ORF1ab/nsp31283D1283YGacTac22P.20.000373
ORF1ab/nsp31283D1283DgaCgaT22Q.40.00091
ORF1ab/nsp31283D1283DgaCgaT11A.10.000282
ORF1ab/nsp31283D1283AgAcgCc11A.2.5.20.001572
ORF1ab/nsp31283D1283delGAC---11AD.20.000219
ORF1ab/nsp31283D1283DgaCgaT11AL.10.012987
ORF1ab/nsp31283D1283SGAcAGc11All0
ORF1ab/nsp31283D1283PGAcCCc11All0
ORF1ab/nsp31283D1283LGACTTG11All0
ORF1ab/nsp31283D1283FGACTTT11All0
ORF1ab/nsp31283D1283delGAC---11AY.10.000396
ORF1ab/nsp31283D1283GgAcgGc11AY.1020.000027
ORF1ab/nsp31283D1283YGacTac11AY.1040.001984
ORF1ab/nsp31283D1283NGacAac11AY.1110.000183
ORF1ab/nsp31283D1283HGacCac11AY.1130.000142
ORF1ab/nsp31283D1283DgaCgaT11AY.1160.000287
ORF1ab/nsp31283D1283NGacAac11AY.1170.000085
ORF1ab/nsp31283D1283DgaCgaT11AY.1180.000063
ORF1ab/nsp31283D1283YGacTac11AY.1180.000063
ORF1ab/nsp31283D1283AgAcgCc11AY.1190.000035
ORF1ab/nsp31283D1283EgaCgaA11AY.1190.000035
ORF1ab/nsp31283D1283YGacTac11AY.120.000316
ORF1ab/nsp31283D1283delGAC---11AY.1200.000037
ORF1ab/nsp31283D1283DgaCgaT11AY.120.2.10.000498
ORF1ab/nsp31283D1283DgaCgaT11AY.130.000161
ORF1ab/nsp31283D1283YGacTac11AY.160.00038
ORF1ab/nsp31283D1283DgaCgaT11AY.16.10.00047
ORF1ab/nsp31283D1283YGacTac11AY.170.008197
ORF1ab/nsp31283D1283delGAC---11AY.190.00114
ORF1ab/nsp31283D1283VgAcgTc11AY.190.00114
ORF1ab/nsp31283D1283YGacTac11AY.230.00007
ORF1ab/nsp31283D1283GgAcgGc11AY.250.000006
ORF1ab/nsp31283D1283NGacAac11AY.250.000006
ORF1ab/nsp31283D1283YGacTac11AY.260.000028
ORF1ab/nsp31283D1283delGAC---11AY.30.00001
ORF1ab/nsp31283D1283GgAcgGc11AY.3.10.000085
ORF1ab/nsp31283D1283YGacTac11AY.3.10.000085
ORF1ab/nsp31283D1283DgaCgaT11AY.300.000396
ORF1ab/nsp31283D1283delGAC---11AY.330.000067
ORF1ab/nsp31283D1283DgaCgaT11AY.34.10.00051
ORF1ab/nsp31283D1283delGAC---11AY.350.000233
ORF1ab/nsp31283D1283YGacTac11AY.360.000148
ORF1ab/nsp31283D1283YGacTac11AY.370.000316
ORF1ab/nsp31283D1283NGacAac11AY.370.000316
ORF1ab/nsp31283D1283NGacAac11AY.390.000025
ORF1ab/nsp31283D1283DgaCgaT11AY.4.10.000737
ORF1ab/nsp31283D1283DgaCgaT11AY.4.30.000842
ORF1ab/nsp31283D1283YGacTac11AY.420.00004
ORF1ab/nsp31283D1283HGacCac11AY.430.000004
ORF1ab/nsp31283D1283LGACTTG11AY.440.000006
ORF1ab/nsp31283D1283AgAcgCc11AY.440.000006
ORF1ab/nsp31283D1283NGacAac11AY.440.000006
ORF1ab/nsp31283D1283NGacAac11AY.450.000122
ORF1ab/nsp31283D1283delGAC---11AY.460.000104
ORF1ab/nsp31283D1283delGAC---11AY.46.20.000635
ORF1ab/nsp31283D1283YGacTac11AY.46.50.000198
ORF1ab/nsp31283D1283YGacTac11AY.46.60.000072
ORF1ab/nsp31283D1283DgaCgaT11AY.5.30.000337
ORF1ab/nsp31283D1283DgaCgaT11AY.5.40.000277
ORF1ab/nsp31283D1283DgaCgaT11AY.540.000095
ORF1ab/nsp31283D1283DgaCgaT11AY.550.000917
ORF1ab/nsp31283D1283YGacTac11AY.560.001605
ORF1ab/nsp31283D1283delGAC---11AY.590.00053
ORF1ab/nsp31283D1283DgaCgaT11AY.590.00053
ORF1ab/nsp31283D1283delGAC---11AY.60.000041
ORF1ab/nsp31283D1283delGAC---11AY.600.000938
ORF1ab/nsp31283D1283YGacTac11AY.650.000533
ORF1ab/nsp31283D1283YGacTac11AY.680.000274
ORF1ab/nsp31283D1283YGacTac11AY.70.000196
ORF1ab/nsp31283D1283YGacTac11AY.7.10.000113
ORF1ab/nsp31283D1283DgaCgaT11AY.740.000116
ORF1ab/nsp31283D1283GgAcgGc11AY.750.000056
ORF1ab/nsp31283D1283DgaCgaT11AY.75.10.00018
ORF1ab/nsp31283D1283DgaCgaT11AY.820.001357
ORF1ab/nsp31283D1283NGacAac11AY.840.000437
ORF1ab/nsp31283D1283delGAC---11AY.840.000437
ORF1ab/nsp31283D1283DgaCgaT11AY.850.000427
ORF1ab/nsp31283D1283YGacTac11AY.870.000833
ORF1ab/nsp31283D1283DgaCgaT11AY.870.000833
ORF1ab/nsp31283D1283delGAC---11AY.90.000068
ORF1ab/nsp31283D1283YGacTac11AY.9.20.000037
ORF1ab/nsp31283D1283DgaCgaT11AY.910.00073
ORF1ab/nsp31283D1283YGacTac11AY.91.10.004065
ORF1ab/nsp31283D1283NGacAac11AY.920.000287
ORF1ab/nsp31283D1283YGacTac11AY.920.000287
ORF1ab/nsp31283D1283DgaCgaT11AY.950.000761
ORF1ab/nsp31283D1283GgAcgGc11AY.980.000079
ORF1ab/nsp31283D1283DgaCgaT11AY.980.000079
ORF1ab/nsp31283D1283GgAcgGc11AY.98.10.000048
ORF1ab/nsp31283D1283PGAcCCc11AY.990.001049
ORF1ab/nsp31283D1283HGacCac11AY.990.001049
ORF1ab/nsp31283D1283AgAcgCc11AY.99.20.000092
ORF1ab/nsp31283D1283NGacAac11B0.000128
ORF1ab/nsp31283D1283DgaCgaT11B0.000128
ORF1ab/nsp31283D1283HGacCac11B.10.000009
ORF1ab/nsp31283D1283GgAcgGc11B.10.000009
ORF1ab/nsp31283D1283VgAcgTc11B.10.000009
ORF1ab/nsp31283D1283GgAcgGc11B.1.10.000018
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.10.000327
ORF1ab/nsp31283D1283YGacTac11B.1.1.10.000327
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1180.010204
ORF1ab/nsp31283D1283YGacTac11B.1.1.1600.02381
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1720.018182
ORF1ab/nsp31283D1283NGacAac11B.1.1.1740.003378
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1920.002309
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp31283D1283delGAC---11B.1.1.2210.010101
ORF1ab/nsp31283D1283YGacTac11B.1.1.2220.000204
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp31283D1283delGAC---11B.1.1.2320.001815
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.250.000569
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2630.001558
ORF1ab/nsp31283D1283YGacTac11B.1.1.2690.001353
ORF1ab/nsp31283D1283delGAC---11B.1.1.2790.001121
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp31283D1283YGacTac11B.1.1.2980.000862
ORF1ab/nsp31283D1283FGACTTT11B.1.1.3060.000438
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp31283D1283NGacAac11B.1.1.3090.005848
ORF1ab/nsp31283D1283delGAC---11B.1.1.3110.000358
ORF1ab/nsp31283D1283delGAC---11B.1.1.3120.001912
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp31283D1283YGacTac11B.1.1.3180.000302
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.330.000421
ORF1ab/nsp31283D1283delGAC---11B.1.1.3480.000796
ORF1ab/nsp31283D1283delGAC---11B.1.1.3610.045455
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3660.015873
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp31283D1283delGAC---11B.1.1.370.000193
ORF1ab/nsp31283D1283EgaCgaA11B.1.1.390.00051
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.390.00051
ORF1ab/nsp31283D1283delGAC---11B.1.1.390.00051
ORF1ab/nsp31283D1283delGAC---11B.1.1.4090.002833
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4120.007634
ORF1ab/nsp31283D1283NGacAac11B.1.1.4160.000905
ORF1ab/nsp31283D1283YGacTac11B.1.1.4280.009434
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp31283D1283delGAC---11B.1.1.440.00241
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.460.004367
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.5250.005464
ORF1ab/nsp31283D1283del1gaCga-11B.1.1.70.000001
ORF1ab/nsp31283D1283DgaCgaT11B.1.1.700.000341
ORF1ab/nsp31283D1283DgaCgaT11B.1.1110.001175
ORF1ab/nsp31283D1283DgaCgaT11B.1.1260.001276
ORF1ab/nsp31283D1283DgaCgaT11B.1.1280.000635
ORF1ab/nsp31283D1283YGacTac11B.1.160.160.000929
ORF1ab/nsp31283D1283DgaCgaT11B.1.160.160.000929
ORF1ab/nsp31283D1283GgAcgGc11B.1.1770.000013
ORF1ab/nsp31283D1283delGAC---11B.1.177.110.001698
ORF1ab/nsp31283D1283delGAC---11B.1.177.150.000631
ORF1ab/nsp31283D1283delGAC---11B.1.177.170.000821
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.210.000076
ORF1ab/nsp31283D1283EgaCgaA11B.1.177.210.000076
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.320.00135
ORF1ab/nsp31283D1283delGAC---11B.1.177.350.000691
ORF1ab/nsp31283D1283delGAC---11B.1.177.510.004566
ORF1ab/nsp31283D1283delGAC---11B.1.177.520.001757
ORF1ab/nsp31283D1283delGAC---11B.1.177.560.000668
ORF1ab/nsp31283D1283delGAC---11B.1.177.600.000218
ORF1ab/nsp31283D1283DgaCgaT11B.1.177.620.001192
ORF1ab/nsp31283D1283delGAC---11B.1.177.630.002703
ORF1ab/nsp31283D1283delGAC---11B.1.177.870.000728
ORF1ab/nsp31283D1283delGAC---11B.1.177.90.001332
ORF1ab/nsp31283D1283GgAcgGc11B.1.20.000009
ORF1ab/nsp31283D1283delGAC---11B.1.20.000009
ORF1ab/nsp31283D1283SGAcAGc11B.1.20.000009
ORF1ab/nsp31283D1283EgaCgaA11B.1.20.000009
ORF1ab/nsp31283D1283VgAcgTc11B.1.20.000009
ORF1ab/nsp31283D1283HGacCac11B.1.2100.002132
ORF1ab/nsp31283D1283YGacTac11B.1.2210.000071
ORF1ab/nsp31283D1283NGacAac11B.1.2210.000071
ORF1ab/nsp31283D1283delGAC---11B.1.221.10.002907
ORF1ab/nsp31283D1283GgAcgGc11B.1.2340.000132
ORF1ab/nsp31283D1283NGacAac11B.1.2360.002053
ORF1ab/nsp31283D1283DgaCgaT11B.1.2370.004975
ORF1ab/nsp31283D1283delGAC---11B.1.2580.000067
ORF1ab/nsp31283D1283delGAC---11B.1.258.100.011364
ORF1ab/nsp31283D1283DgaCgaT11B.1.258.170.000104
ORF1ab/nsp31283D1283AgAcgCc11B.1.258.210.007752
ORF1ab/nsp31283D1283DgaCgaT11B.1.2980.002114
ORF1ab/nsp31283D1283YGacTac11B.1.3200.001245
ORF1ab/nsp31283D1283delGAC---11B.1.3490.000715
ORF1ab/nsp31283D1283EgaCgaA11B.1.3510.00003
ORF1ab/nsp31283D1283NGacAac11B.1.3510.00003
ORF1ab/nsp31283D1283YGacTac11B.1.360.000146
ORF1ab/nsp31283D1283NGacAac11B.1.360.000146
ORF1ab/nsp31283D1283delGAC---11B.1.36.180.00042
ORF1ab/nsp31283D1283DgaCgaT11B.1.36.290.000517
ORF1ab/nsp31283D1283NGacAac11B.1.36.360.000602
ORF1ab/nsp31283D1283DgaCgaT11B.1.36.80.001
ORF1ab/nsp31283D1283GgAcgGc11B.1.3690.000285
ORF1ab/nsp31283D1283delGAC---11B.1.3890.001002
ORF1ab/nsp31283D1283NGacAac11B.1.4000.000429
ORF1ab/nsp31283D1283DgaCgaT11B.1.4090.000781
ORF1ab/nsp31283D1283delGAC---11B.1.4090.000781
ORF1ab/nsp31283D1283EgaCgaG11B.1.4290.000024
ORF1ab/nsp31283D1283GgAcgGc11B.1.4290.000024
ORF1ab/nsp31283D1283DgaCgaT11B.1.4390.005917
ORF1ab/nsp31283D1283DgaCgaT11B.1.4560.003268
ORF1ab/nsp31283D1283GgAcgGc11B.1.4630.008065
ORF1ab/nsp31283D1283NGacAac11B.1.466.20.000391
ORF1ab/nsp31283D1283DgaCgaT11B.1.4710.002732
ORF1ab/nsp31283D1283AgAcgCc11B.1.4970.000315
ORF1ab/nsp31283D1283DgaCgaT11B.1.4990.00105
ORF1ab/nsp31283D1283DgaCgaT11B.1.5010.007353
ORF1ab/nsp31283D1283YGacTac11B.1.5040.03125
ORF1ab/nsp31283D1283YGacTac11B.1.5170.000427
ORF1ab/nsp31283D1283delGAC---11B.1.5250.000113
ORF1ab/nsp31283D1283NGacAac11B.1.5260.000024
ORF1ab/nsp31283D1283DgaCgaT11B.1.5580.004566
ORF1ab/nsp31283D1283DgaCgaT11B.1.5640.000426
ORF1ab/nsp31283D1283DgaCgaT11B.1.5750.000303
ORF1ab/nsp31283D1283GgAcgGc11B.1.5800.004065
ORF1ab/nsp31283D1283DgaCgaT11B.1.5800.004065
ORF1ab/nsp31283D1283YGacTac11B.1.5820.000491
ORF1ab/nsp31283D1283delGAC---11B.1.5850.027778
ORF1ab/nsp31283D1283DgaCgaT11B.1.5880.00091
ORF1ab/nsp31283D1283NGacAac11B.1.5960.000087
ORF1ab/nsp31283D1283YGacTac11B.1.5970.00463
ORF1ab/nsp31283D1283YGacTac11B.1.5990.00365
ORF1ab/nsp31283D1283YGacTac11B.1.617.10.000129
ORF1ab/nsp31283D1283VgACgTA11B.1.617.20.000004
ORF1ab/nsp31283D1283del1Gac-ac11B.1.617.20.000004
ORF1ab/nsp31283D1283delGAC---11B.1.617.30.002985
ORF1ab/nsp31283D1283DgaCgaT11B.1.6180.004032
ORF1ab/nsp31283D1283DgaCgaT11B.1.6200.000946
ORF1ab/nsp31283D1283delGAC---11B.1.6210.000089
ORF1ab/nsp31283D1283DgaCgaT11B.1.6210.000089
ORF1ab/nsp31283D1283delGAC---11B.1.6300.005236
ORF1ab/nsp31283D1283DgaCgaT11B.1.6340.003425
ORF1ab/nsp31283D1283NGacAac11B.230.002924
ORF1ab/nsp31283D1283delGAC---11B.340.013699
ORF1ab/nsp31283D1283EgaCgaA11B.400.000364
ORF1ab/nsp31283D1283DgaCgaT11C.180.002591
ORF1ab/nsp31283D1283DgaCgaT11C.350.000774
ORF1ab/nsp31283D1283EgaCgaA11D.20.000075
ORF1ab/nsp31283D1283YGacTac11D.20.000075
ORF1ab/nsp31283D1283DgaCgaT11N.40.004255
ORF1ab/nsp31283D1283YGacTac11P.1.150.000232
ORF1ab/nsp31283D1283DgaCgaT11P.1.150.000232
ORF1ab/nsp31283D1283delGAC---11P.1.150.000232
ORF1ab/nsp31283D1283DgaCgaT11P.1.70.000319
ORF1ab/nsp31283D1283YGacTac11P.1.70.000319
ORF1ab/nsp31283D1283YGacTac11Q.10.000126
ORF1ab/nsp31283D1283delGAC---11Q.10.000126
ORF1ab/nsp31283D1283EgaCgaG11R.10.00009
ORF1ab/nsp31283D1283DgaCgaT11R.10.00009
ORF1ab/nsp31283D1283delGAC---11U.30.003861
ORF1ab/nsp31283D1283delGAC---11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.