CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1283 | D1283D | D2101D | syn | gaC | gaT | 8694 | 8694 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283Y | D2101Y | nonsyn | Gac | Tac | 1319 | 1318 | 0.999242 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283Y | D2101Y | nonsyn | GaC | TaT | 1319 | 1 | 0.00075815 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283N | D2101N | nonsyn | Gac | Aac | 351 | 351 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283del | D2101del | del | GAC | --- | 278 | 278 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283E | D2101E | nonsyn | gaC | gaA | 90 | 86 | 0.955556 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283E | D2101E | nonsyn | gaC | gaG | 90 | 4 | 0.0444444 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283G | D2101G | nonsyn | gAc | gGc | 79 | 79 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283H | D2101H | nonsyn | Gac | Cac | 48 | 46 | 0.958333 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283H | D2101H | nonsyn | GaC | CaT | 48 | 2 | 0.0416667 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283V | D2101V | nonsyn | gAc | gTc | 44 | 43 | 0.977273 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283V | D2101V | nonsyn | gAC | gTA | 44 | 1 | 0.0227273 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283A | D2101A | nonsyn | gAc | gCc | 20 | 20 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283K | D2101K | nonsyn | GaC | AaA | 2 | 2 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283Q | D2101Q | nonsyn | GaC | CaA | 2 | 2 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283del2 | D2101del2 | del | gAC | g-- | 2 | 2 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283del1 | D2101del1 | del | Gac | -ac | 2 | 1 | 0.5 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283del1 | D2101del1 | del | gaC | ga- | 2 | 1 | 0.5 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283S | D2101S | nonsyn | GAc | AGc | 1 | 1 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283P | D2101P | nonsyn | GAc | CCc | 1 | 1 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283F | D2101F | nonsyn | GAC | TTT | 1 | 1 | 1 | 6566-6568 |
ORF1ab/nsp3 | 1283 | D1283L | D2101L | nonsyn | GAC | TTG | 1 | 1 | 1 | 6566-6568 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 8694 | 8694 | All | 0.001663 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5033 | 5033 | Q.3 | 0.729949 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1318 | 1319 | All | 0.000252 |
ORF1ab/nsp3 | 1283 | D1283Y | GaC | TaT | 1 | 1319 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 799 | 799 | B.1.1.7 | 0.000715 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 697 | 697 | AY.4 | 0.001085 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 493 | 494 | B.1.1.7 | 0.000441 |
ORF1ab/nsp3 | 1283 | D1283Y | GaC | TaT | 1 | 494 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 351 | 351 | All | 0.000067 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 278 | 278 | All | 0.000053 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 257 | 257 | B.1.429 | 0.006047 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 217 | 217 | B.1.617.2 | 0.000817 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 126 | 126 | B.1.1.7 | 0.000113 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 120 | 120 | AY.103 | 0.000745 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 117 | 117 | B.1.177 | 0.001541 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 102 | 102 | AY.100 | 0.004693 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 101 | 101 | P.1 | 0.001591 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 95 | 95 | AY.4 | 0.000148 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 86 | 90 | All | 0.000016 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaG | 4 | 90 | All | 0.000001 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 81 | 81 | B.1.526 | 0.001904 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 79 | 79 | All | 0.000015 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 72 | 72 | AY.1 | 0.028492 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 71 | 71 | B.1.1.519 | 0.002819 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 65 | 65 | B.1.1.70 | 0.022169 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 61 | 61 | B.1 | 0.000559 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 61 | 61 | B.1.617.2 | 0.00023 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 58 | 58 | AY.54 | 0.00553 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 58 | 58 | B.1.2 | 0.000511 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 58 | 58 | B.1.36.36 | 0.034919 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 57 | 57 | AY.103 | 0.000354 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 52 | 52 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 50 | 50 | B.1.526 | 0.001175 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 46 | 48 | All | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283H | GaC | CaT | 2 | 48 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 43 | 44 | All | 0.000008 |
ORF1ab/nsp3 | 1283 | D1283V | gAC | gTA | 1 | 44 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 43 | 43 | AY.43 | 0.000191 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 41 | 41 | AY.119 | 0.001448 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 39 | 39 | B.1.1 | 0.000707 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 39 | 39 | B.1.258 | 0.002595 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 38 | 38 | AY.102 | 0.001008 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 38 | 38 | B.1.160 | 0.001185 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 38 | 38 | B.1.596 | 0.003311 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 35 | 35 | AY.20 | 0.00136 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 30 | 30 | AY.23 | 0.002092 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 26 | 27 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaG | 1 | 27 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 24 | 24 | AY.46.5 | 0.004762 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 23 | 23 | AY.4.5 | 0.002472 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 22 | 22 | P.2 | 0.004106 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 21 | 21 | P.1.14 | 0.001004 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 18 | 18 | B.1.243 | 0.001253 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 17 | 17 | AY.3 | 0.000169 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 17 | 17 | B.1.221.2 | 0.068273 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 16 | 16 | AY.15 | 0.035556 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 15 | 15 | AY.34 | 0.001454 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 14 | 14 | Q.8 | 0.002309 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 13 | 13 | AY.83 | 0.022414 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 12 | 12 | AY.47 | 0.000373 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 11 | 11 | B.1.1.147 | 1 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 11 | 11 | B.1.1.159 | 0.051402 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 10 | 10 | C.16 | 0.010604 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 8 | 8 | AY.105 | 0.005145 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 8 | 8 | AY.14 | 0.000704 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 7 | 7 | AY.74 | 0.00081 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 6 | 6 | B.1.1.355 | 0.092308 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | B.1.346 | 0.007864 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | B.1.36.22 | 0.007246 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 6 | 6 | N.5 | 0.010601 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 5 | 5 | AY.95 | 0.003805 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | B.1.1.376 | 0.029762 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | B.1.206 | 0.004078 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.530 | 0.021429 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1283 | D1283K | GaC | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1283 | D1283H | GaC | CaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1283 | D1283Q | GaC | CaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1283 | D1283Q | GaC | CaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283K | GaC | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283del2 | gAC | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283del1 | Gac | -ac | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283del1 | gaC | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1283 | D1283del2 | gAC | g-- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.1.109 | 0.08 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.13 | 0.004751 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 2 | 2 | B.1.166 | 0.016949 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.573 | 0.012195 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | C.8 | 0.008929 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp3 | 1283 | D1283S | GAc | AGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283P | GAc | CCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283L | GAC | TTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283F | GAC | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1283 | D1283L | GAC | TTG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1283 | D1283P | GAc | CCc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.160 | 0.02381 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1283 | D1283F | GAC | TTT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1283 | D1283del1 | gaC | ga- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283S | GAc | AGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283V | gAc | gTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1283 | D1283H | Gac | Cac | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 1283 | D1283A | gAc | gCc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1283 | D1283G | gAc | gGc | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1283 | D1283V | gAC | gTA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1283 | D1283del1 | Gac | -ac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1283 | D1283N | Gac | Aac | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1283 | D1283Y | Gac | Tac | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1283 | D1283E | gaC | gaG | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1283 | D1283D | gaC | gaT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1283 | D1283del | GAC | --- | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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