CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1277 | L1277L | L2095L | syn | Cta | Tta | 1822 | 1650 | 0.905598 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277L | L2095L | syn | ctA | ctG | 1822 | 149 | 0.0817783 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277L | L2095L | syn | ctA | ctC | 1822 | 17 | 0.00933041 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277L | L2095L | syn | ctA | ctT | 1822 | 6 | 0.00329308 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277I | L2095I | nonsyn | Cta | Ata | 380 | 380 | 1 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del | L2095del | del | CTA | --- | 271 | 271 | 1 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277P | L2095P | nonsyn | cTa | cCa | 45 | 45 | 1 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277Q | L2095Q | nonsyn | cTa | cAa | 37 | 21 | 0.567568 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277Q | L2095Q | nonsyn | cTA | cAG | 37 | 16 | 0.432432 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del1 | L2095del1 | del | ctA | ct- | 11 | 7 | 0.636364 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del1 | L2095del1 | del | Cta | -ta | 11 | 3 | 0.272727 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del1 | L2095del1 | del | CtA | -tT | 11 | 1 | 0.0909091 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del2 | L2095del2 | del | cTA | c-- | 8 | 6 | 0.75 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277del2 | L2095del2 | del | CTa | --a | 8 | 2 | 0.25 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277V | L2095V | nonsyn | Cta | Gta | 7 | 7 | 1 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277F | L2095F | nonsyn | CtA | TtT | 3 | 3 | 1 | 6548-6550 |
ORF1ab/nsp3 | 1277 | L1277R | L2095R | nonsyn | cTa | cGa | 2 | 2 | 1 | 6548-6550 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1650 | 1822 | All | 0.000316 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 149 | 1822 | All | 0.000028 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 17 | 1822 | All | 0.000003 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 6 | 1822 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 390 | 466 | B.1.1.7 | 0.000349 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 75 | 466 | B.1.1.7 | 0.000067 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 466 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 380 | 380 | All | 0.000073 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 271 | 271 | All | 0.000052 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 207 | 207 | AY.34 | 0.020072 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 190 | 202 | AY.4 | 0.000296 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 12 | 202 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 118 | 118 | B.1.1.7 | 0.000106 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 94 | 95 | P.1 | 0.001481 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 95 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 87 | 87 | AY.23 | 0.006068 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 66 | 68 | AY.43 | 0.000292 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 68 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 68 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 59 | 60 | AY.102 | 0.001564 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 60 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 53 | 58 | B.1.617.2 | 0.0002 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 4 | 58 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 58 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 54 | 56 | AY.25 | 0.000325 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 2 | 56 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 53 | 55 | B.1.2 | 0.000467 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 2 | 55 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 45 | 45 | All | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 43 | 43 | B.1.221 | 0.003054 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 40 | 40 | B.1.160 | 0.001248 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 21 | 37 | All | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277Q | cTA | cAG | 16 | 37 | All | 0.000003 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 28 | 29 | AY.44 | 0.00017 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 29 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 29 | 29 | B.1.594 | 0.90625 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 27 | 27 | B.1.1.307 | 0.068354 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 16 | 23 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 7 | 23 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 22 | 23 | B.1.1 | 0.000399 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 23 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 22 | 22 | A.2.5.2 | 0.034591 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 19 | 22 | B.1 | 0.000174 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 22 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 22 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 22 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 20 | 20 | B.1.177.4 | 0.004221 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 17 | 18 | AY.3.1 | 0.001449 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 18 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 17 | 18 | AY.46.6 | 0.001228 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 18 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 17 | 17 | AY.111 | 0.003114 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 12 | 15 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 3 | 15 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 12 | 13 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 13 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 11 | 12 | AY.45 | 0.001339 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 12 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 7 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277del1 | Cta | -ta | 3 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277del1 | CtA | -tT | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 10 | 11 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 11 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 7 | 10 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 3 | 10 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1277 | L1277Q | cTA | cAG | 6 | 9 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 3 | 9 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1277 | L1277Q | cTA | cAG | 8 | 8 | 0.444444 | |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277del2 | CTa | --a | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 8 | 8 | B.1.1.277 | 0.00607 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 5 | 7 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 2 | 7 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 6 | 6 | B.1.351.3 | 0.005259 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 5 | 5 | A.2.4 | 0.016835 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 5 | 5 | B.1.1.263 | 0.007788 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 4 | 4 | B.1.1.46 | 0.017467 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1277 | L1277Q | cTA | cAG | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp3 | 1277 | L1277F | CtA | TtT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1277 | L1277del1 | Cta | -ta | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1277 | L1277del2 | CTa | --a | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | B.1.162 | 0.015075 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | B.1.446 | 0.06 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1277 | L1277R | cTa | cGa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1277 | L1277del1 | CtA | -tT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277Q | cTA | cAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277V | Cta | Gta | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1277 | L1277R | cTa | cGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1277 | L1277del1 | Cta | -ta | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1277 | L1277F | CtA | TtT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.277 | 0.02381 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1277 | L1277L | ctA | ctC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1277 | L1277del1 | ctA | ct- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277del2 | cTA | c-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277F | CtA | TtT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1277 | L1277F | CtA | TtT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1277 | L1277Q | cTa | cAa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1277 | L1277R | cTa | cGa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1277 | L1277I | Cta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1277 | L1277P | cTa | cCa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1277 | L1277L | Cta | Tta | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1277 | L1277del | CTA | --- | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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