CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1274

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31274H1274YH2092YnonsynCacTac24712246960.9993536539-6541
ORF1ab/nsp31274H1274YH2092YnonsynCaCTaT24712160.0006474596539-6541
ORF1ab/nsp31274H1274HH2092HsyncaCcaT129671296716539-6541
ORF1ab/nsp31274H1274delH2092deldelCAC---26326316539-6541
ORF1ab/nsp31274H1274RH2092RnonsyncAccGc20620616539-6541
ORF1ab/nsp31274H1274NH2092NnonsynCacAac13013016539-6541
ORF1ab/nsp31274H1274LH2092LnonsyncAccTc595916539-6541
ORF1ab/nsp31274H1274PH2092PnonsyncAccCc36350.9722226539-6541
ORF1ab/nsp31274H1274PH2092PnonsyncACcCT3610.02777786539-6541
ORF1ab/nsp31274H1274DH2092DnonsynCacGac313116539-6541
ORF1ab/nsp31274H1274QH2092QnonsyncaCcaA29250.8620696539-6541
ORF1ab/nsp31274H1274QH2092QnonsyncaCcaG2940.1379316539-6541
ORF1ab/nsp31274H1274del2H2092del2delCAc--c1580.5333336539-6541
ORF1ab/nsp31274H1274del2H2092del2delcACc--1570.4666676539-6541
ORF1ab/nsp31274H1274del1H2092del1delCac-ac840.56539-6541
ORF1ab/nsp31274H1274del1H2092del1delcaCca-830.3756539-6541
ORF1ab/nsp31274H1274del1H2092del1delcAcc-c810.1256539-6541
ORF1ab/nsp31274H1274CH2092CnonsynCAcTGc2216539-6541
ORF1ab/nsp31274H1274SH2092SnonsynCAcTCc210.56539-6541
ORF1ab/nsp31274H1274SH2092SnonsynCACTCT210.56539-6541
ORF1ab/nsp31274H1274VH2092VnonsynCACGTT210.56539-6541
ORF1ab/nsp31274H1274VH2092VnonsynCAcGTc210.56539-6541
ORF1ab/nsp31274H1274IH2092InonsynCAcATc1116539-6541
ORF1ab/nsp31274H1274KH2092KnonsynCaCAaA1116539-6541

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31274H1274YCacTac2469624712All0.004723
ORF1ab/nsp31274H1274YCaCTaT1624712All0.000003
ORF1ab/nsp31274H1274HcaCcaT1296712967All0.00248
ORF1ab/nsp31274H1274YCacTac1046910471B.1.617.20.03942
ORF1ab/nsp31274H1274YCaCTaT210471B.1.617.20.000008
ORF1ab/nsp31274H1274HcaCcaT39463946P.10.062165
ORF1ab/nsp31274H1274YCacTac22672267AY.300.897111
ORF1ab/nsp31274H1274YCacTac20592060B.1.1.70.001843
ORF1ab/nsp31274H1274YCaCTaT12060B.1.1.70.000001
ORF1ab/nsp31274H1274HcaCcaT12551255B.1.1.70.001124
ORF1ab/nsp31274H1274YCacTac948949AY.40.001475
ORF1ab/nsp31274H1274YCaCTaT1949AY.40.000002
ORF1ab/nsp31274H1274YCacTac820820AY.400.790743
ORF1ab/nsp31274H1274HcaCcaT774774B.1.4260.781029
ORF1ab/nsp31274H1274YCacTac707707B.10.006476
ORF1ab/nsp31274H1274HcaCcaT653653AY.40.001016
ORF1ab/nsp31274H1274HcaCcaT569569AY.250.003422
ORF1ab/nsp31274H1274HcaCcaT513513B.1.1600.015999
ORF1ab/nsp31274H1274YCacTac448448B.1.1270.984615
ORF1ab/nsp31274H1274HcaCcaT436436AY.1030.002707
ORF1ab/nsp31274H1274YCacTac430430Q.30.062364
ORF1ab/nsp31274H1274HcaCcaT382382B.1.1.5190.01517
ORF1ab/nsp31274H1274YCacTac324324B.1.2430.022545
ORF1ab/nsp31274H1274YCacTac306306AY.9.20.011239
ORF1ab/nsp31274H1274YCacTac288288AY.4.20.006246
ORF1ab/nsp31274H1274HcaCcaT277277A.280.732804
ORF1ab/nsp31274H1274HcaCcaT274274B.1.617.20.001032
ORF1ab/nsp31274H1274YCacTac270270AY.430.001196
ORF1ab/nsp31274H1274delCAC---263263All0.00005
ORF1ab/nsp31274H1274YCacTac252252AY.50.005204
ORF1ab/nsp31274H1274YCacTac251251AY.700.052335
ORF1ab/nsp31274H1274HcaCcaT243243AY.200.009444
ORF1ab/nsp31274H1274YCacTac229229B.1.20.002016
ORF1ab/nsp31274H1274YCacTac228228AY.1030.001416
ORF1ab/nsp31274H1274RcAccGc206206All0.000039
ORF1ab/nsp31274H1274HcaCcaT200200AY.880.176835
ORF1ab/nsp31274H1274HcaCcaT198198B.10.001814
ORF1ab/nsp31274H1274HcaCcaT198198B.1.20.001743
ORF1ab/nsp31274H1274YCacTac190190AY.60.007814
ORF1ab/nsp31274H1274YCacTac167167AY.30.001661
ORF1ab/nsp31274H1274HcaCcaT156156B.1.4290.003671
ORF1ab/nsp31274H1274YCacTac139139AY.440.000846
ORF1ab/nsp31274H1274YCacTac131131A0.050697
ORF1ab/nsp31274H1274NCacAac130130All0.000025
ORF1ab/nsp31274H1274delCAC---130130B.1.1.70.000116
ORF1ab/nsp31274H1274YCacTac126126AY.390.003114
ORF1ab/nsp31274H1274HcaCcaT122122AY.440.000743
ORF1ab/nsp31274H1274HcaCcaT122122B.1.36.80.122
ORF1ab/nsp31274H1274YCacTac116116AY.16.10.054511
ORF1ab/nsp31274H1274YCacTac115116AY.610.012049
ORF1ab/nsp31274H1274YCaCTaT1116AY.610.000105
ORF1ab/nsp31274H1274YCacTac110110B.1.1770.001448
ORF1ab/nsp31274H1274YCacTac105105B.1.1600.003275
ORF1ab/nsp31274H1274YCacTac9696AY.680.02628
ORF1ab/nsp31274H1274YCacTac9393B.1.10.001687
ORF1ab/nsp31274H1274HcaCcaT8787AY.70.017052
ORF1ab/nsp31274H1274HcaCcaT8585B.1.2340.011215
ORF1ab/nsp31274H1274HcaCcaT8282B.1.5260.001927
ORF1ab/nsp31274H1274YCacTac8181AY.740.009367
ORF1ab/nsp31274H1274YCacTac8080B.1.5341
ORF1ab/nsp31274H1274HcaCcaT7979AY.1200.002937
ORF1ab/nsp31274H1274YCacTac7577AY.250.000451
ORF1ab/nsp31274H1274YCaCTaT277AY.250.000012
ORF1ab/nsp31274H1274HcaCcaT7676AY.430.000337
ORF1ab/nsp31274H1274YCacTac7274P.10.001134
ORF1ab/nsp31274H1274YCaCTaT274P.10.000032
ORF1ab/nsp31274H1274HcaCcaT7171AY.1190.002507
ORF1ab/nsp31274H1274YCacTac7070AY.1020.001856
ORF1ab/nsp31274H1274HcaCcaT6969AY.30.000686
ORF1ab/nsp31274H1274HcaCcaT6868B.1.1.3480.05414
ORF1ab/nsp31274H1274YCacTac6868B.1.1.5190.0027
ORF1ab/nsp31274H1274HcaCcaT6666B.1.1.100.073579
ORF1ab/nsp31274H1274NCacAac6565AY.40.000101
ORF1ab/nsp31274H1274HcaCcaT6464B.1.1.2140.003549
ORF1ab/nsp31274H1274HcaCcaT6262B.1.10.001125
ORF1ab/nsp31274H1274LcAccTc5959All0.000011
ORF1ab/nsp31274H1274YCacTac5959AY.260.00167
ORF1ab/nsp31274H1274YCacTac5959B.1.3510.001754
ORF1ab/nsp31274H1274HcaCcaT5757AY.330.003806
ORF1ab/nsp31274H1274YCacTac5757AY.470.001773
ORF1ab/nsp31274H1274YCacTac5757AY.750.003193
ORF1ab/nsp31274H1274HcaCcaT5757B.1.3510.001694
ORF1ab/nsp31274H1274YCacTac5757B.1.5250.00645
ORF1ab/nsp31274H1274YCacTac5656AY.130.009015
ORF1ab/nsp31274H1274HcaCcaT5656B.1.1770.000737
ORF1ab/nsp31274H1274YCacTac5456B.1.4290.001271
ORF1ab/nsp31274H1274YCaCTaT256B.1.4290.000047
ORF1ab/nsp31274H1274YCacTac5454AY.200.002099
ORF1ab/nsp31274H1274RcAccGc5252AY.40.000081
ORF1ab/nsp31274H1274HcaCcaT5050B.1.1.4320.063291
ORF1ab/nsp31274H1274YCacTac4848AY.310.888889
ORF1ab/nsp31274H1274YCacTac4848AY.650.025586
ORF1ab/nsp31274H1274HcaCcaT4747AU.30.099156
ORF1ab/nsp31274H1274LcAccTc4646AY.440.00028
ORF1ab/nsp31274H1274YCacTac4646B.1.5240.064698
ORF1ab/nsp31274H1274YCacTac4646B.1.5260.001081
ORF1ab/nsp31274H1274YCacTac4545P.20.008399
ORF1ab/nsp31274H1274YCacTac4444AY.290.000694
ORF1ab/nsp31274H1274HcaCcaT4343AY.460.004475
ORF1ab/nsp31274H1274YCacTac4343AY.75.10.007753
ORF1ab/nsp31274H1274YCacTac4243B.1.177.860.007705
ORF1ab/nsp31274H1274YCaCTaT143B.1.177.860.000183
ORF1ab/nsp31274H1274YCacTac4242AY.46.60.003033
ORF1ab/nsp31274H1274YCacTac4040AY.340.003879
ORF1ab/nsp31274H1274HcaCcaT4040AY.540.003814
ORF1ab/nsp31274H1274HcaCcaT4040P.1.120.019361
ORF1ab/nsp31274H1274HcaCcaT3939B.1.4270.001969
ORF1ab/nsp31274H1274HcaCcaT3737AY.50.000764
ORF1ab/nsp31274H1274PcAccCc3536All0.000007
ORF1ab/nsp31274H1274PcACcCT136All0
ORF1ab/nsp31274H1274YCacTac3636AY.560.057785
ORF1ab/nsp31274H1274HcaCcaT3434AY.1020.000901
ORF1ab/nsp31274H1274HcaCcaT3333AY.410.0097
ORF1ab/nsp31274H1274YCacTac3333B.1.4270.001666
ORF1ab/nsp31274H1274HcaCcaT3232B.1.619.10.020526
ORF1ab/nsp31274H1274RcAccGc3232B.1.6210.002833
ORF1ab/nsp31274H1274YCacTac3232B.1.910.06639
ORF1ab/nsp31274H1274DCacGac3131All0.000006
ORF1ab/nsp31274H1274YCacTac3131AY.1210.004195
ORF1ab/nsp31274H1274HcaCcaT3131AY.4.20.000672
ORF1ab/nsp31274H1274YCacTac3030AY.590.01589
ORF1ab/nsp31274H1274HcaCcaT3030AZ.10.026019
ORF1ab/nsp31274H1274HcaCcaT3030B.1.2210.002131
ORF1ab/nsp31274H1274QcaCcaA2529All0.000005
ORF1ab/nsp31274H1274QcaCcaG429All0.000001
ORF1ab/nsp31274H1274YCacTac2929AY.9.10.002428
ORF1ab/nsp31274H1274YCacTac2929B.1.1.2840.003115
ORF1ab/nsp31274H1274YCacTac2828AY.490.089457
ORF1ab/nsp31274H1274YCacTac2828B.1.221.30.023333
ORF1ab/nsp31274H1274YCacTac2727AY.540.002574
ORF1ab/nsp31274H1274YCacTac2627D.20.001951
ORF1ab/nsp31274H1274YCaCTaT127D.20.000075
ORF1ab/nsp31274H1274YCacTac2626AY.39.10.00103
ORF1ab/nsp31274H1274HcaCcaT2525AY.270.001618
ORF1ab/nsp31274H1274HcaCcaT2525AY.390.000618
ORF1ab/nsp31274H1274HcaCcaT2525B.1.1.280.007781
ORF1ab/nsp31274H1274HcaCcaT2424B.1.2580.001597
ORF1ab/nsp31274H1274YCacTac2323B.1.2580.001531
ORF1ab/nsp31274H1274HcaCcaT2323P.1.10.007306
ORF1ab/nsp31274H1274HcaCcaT2222AY.1170.001859
ORF1ab/nsp31274H1274YCacTac2222AY.1200.000818
ORF1ab/nsp31274H1274YCacTac2222B.1.1.470.117647
ORF1ab/nsp31274H1274NCacAac2222B.1.20.000194
ORF1ab/nsp31274H1274HcaCcaT2222B.1.214.20.013189
ORF1ab/nsp31274H1274HcaCcaT2222B.1.258.170.002287
ORF1ab/nsp31274H1274YCacTac2222C.370.002553
ORF1ab/nsp31274H1274HcaCcaT2121AY.4.50.002257
ORF1ab/nsp31274H1274RcAccGc2121B.1.1770.000277
ORF1ab/nsp31274H1274YCacTac2121B.1.2631
ORF1ab/nsp31274H1274YCacTac1921B.1.438.10.002038
ORF1ab/nsp31274H1274YCaCTaT221B.1.438.10.000215
ORF1ab/nsp31274H1274YCacTac2020AY.1170.00169
ORF1ab/nsp31274H1274delCAC---2020AY.40.000031
ORF1ab/nsp31274H1274YCacTac2020AY.460.002082
ORF1ab/nsp31274H1274HcaCcaT2020B.1.1.3060.008768
ORF1ab/nsp31274H1274HcaCcaT2020P.1.150.004647
ORF1ab/nsp31274H1274PcAccCc1919AY.40.00003
ORF1ab/nsp31274H1274YCacTac1919AY.450.002312
ORF1ab/nsp31274H1274HcaCcaT1919AY.60.000781
ORF1ab/nsp31274H1274YCacTac1919AY.910.013879
ORF1ab/nsp31274H1274HcaCcaT1919B.1.351.20.005749
ORF1ab/nsp31274H1274YCacTac1818AY.330.001202
ORF1ab/nsp31274H1274HcaCcaT1818AY.470.00056
ORF1ab/nsp31274H1274delCAC---1818B.1.1770.000237
ORF1ab/nsp31274H1274YCacTac1818B.1.177.180.020882
ORF1ab/nsp31274H1274YCacTac1818B.1.5950.004697
ORF1ab/nsp31274H1274RcAccGc1717AY.440.000103
ORF1ab/nsp31274H1274YCacTac1717C.1.20.07234
ORF1ab/nsp31274H1274YCacTac1616AY.520.013029
ORF1ab/nsp31274H1274HcaCcaT1616B.1.3690.004564
ORF1ab/nsp31274H1274HcaCcaT1616B.1.5770.010997
ORF1ab/nsp31274H1274YCacTac1616B.1.619.10.010263
ORF1ab/nsp31274H1274HcaCcaT1616P.1.160.005986
ORF1ab/nsp31274H1274del2CAc--c815All0.000002
ORF1ab/nsp31274H1274del2cACc--715All0.000001
ORF1ab/nsp31274H1274HcaCcaT1515AY.1060.005023
ORF1ab/nsp31274H1274RcAccGc1515AY.1160.004302
ORF1ab/nsp31274H1274YCacTac1515AY.230.001046
ORF1ab/nsp31274H1274HcaCcaT1515AY.290.000237
ORF1ab/nsp31274H1274YCacTac1515AY.420.000603
ORF1ab/nsp31274H1274YCacTac1515AY.550.013761
ORF1ab/nsp31274H1274HcaCcaT1515B.1.1.1570.013699
ORF1ab/nsp31274H1274HcaCcaT1515B.1.177.60.014648
ORF1ab/nsp31274H1274YCacTac1515B.1.351.20.004539
ORF1ab/nsp31274H1274HcaCcaT1515B.1.4090.011719
ORF1ab/nsp31274H1274HcaCcaT1515B.1.6370.001096
ORF1ab/nsp31274H1274YCacTac1414AY.160.005315
ORF1ab/nsp31274H1274YCacTac1414AY.370.004425
ORF1ab/nsp31274H1274HcaCcaT1414B.1.1.1551
ORF1ab/nsp31274H1274YCacTac1414B.1.1.2620.212121
ORF1ab/nsp31274H1274HcaCcaT1414B.1.5960.00122
ORF1ab/nsp31274H1274HcaCcaT1414P.1.140.000669
ORF1ab/nsp31274H1274YCacTac1313AY.580.011797
ORF1ab/nsp31274H1274YCacTac1313AY.980.001027
ORF1ab/nsp31274H1274HcaCcaT1313B.1.2430.000905
ORF1ab/nsp31274H1274RcAccGc1313B.1.2580.000865
ORF1ab/nsp31274H1274YCacTac1313B.1.4260.013118
ORF1ab/nsp31274H1274YCacTac1313B.1.5170.005551
ORF1ab/nsp31274H1274YCacTac1212AY.270.000777
ORF1ab/nsp31274H1274HcaCcaT1212AY.360.001779
ORF1ab/nsp31274H1274YCacTac1212AY.410.003527
ORF1ab/nsp31274H1274YCacTac1212AY.530.00345
ORF1ab/nsp31274H1274YCacTac1212AY.620.005229
ORF1ab/nsp31274H1274HcaCcaT1212AY.670.005571
ORF1ab/nsp31274H1274YCacTac1212AY.7.10.001352
ORF1ab/nsp31274H1274YCacTac1212B.1.1.610.105263
ORF1ab/nsp31274H1274YCacTac1212B.1.177.120.00182
ORF1ab/nsp31274H1274HcaCcaT1212B.1.177.820.005728
ORF1ab/nsp31274H1274YCacTac1212B.1.5960.001046
ORF1ab/nsp31274H1274HcaCcaT1212B.1.6210.001062
ORF1ab/nsp31274H1274YCacTac1111AY.1190.000388
ORF1ab/nsp31274H1274HcaCcaT1111AY.140.000968
ORF1ab/nsp31274H1274HcaCcaT1111AY.340.001067
ORF1ab/nsp31274H1274DCacGac1111AY.430.000049
ORF1ab/nsp31274H1274HcaCcaT1111AY.750.000616
ORF1ab/nsp31274H1274YCacTac1111P.1.120.005324
ORF1ab/nsp31274H1274YCacTac1010AY.1000.00046
ORF1ab/nsp31274H1274HcaCcaT1010AY.1000.00046
ORF1ab/nsp31274H1274YCacTac1010AY.1180.000626
ORF1ab/nsp31274H1274HcaCcaT1010AY.230.000697
ORF1ab/nsp31274H1274YCacTac1010AY.240.00431
ORF1ab/nsp31274H1274HcaCcaT1010AY.260.000283
ORF1ab/nsp31274H1274YCacTac1010AY.280.018904
ORF1ab/nsp31274H1274NCacAac1010AY.290.000158
ORF1ab/nsp31274H1274YCacTac1010AY.850.004272
ORF1ab/nsp31274H1274YCacTac1010AY.860.008299
ORF1ab/nsp31274H1274HcaCcaT1010AY.980.00079
ORF1ab/nsp31274H1274YCacTac1010AY.98.10.000484
ORF1ab/nsp31274H1274HcaCcaT1010B.1.1.3170.004117
ORF1ab/nsp31274H1274NCacAac1010B.1.1.70.000009
ORF1ab/nsp31274H1274YCacTac1010B.1.177.560.006676
ORF1ab/nsp31274H1274QcaCcaA1010B.1.4160.01269
ORF1ab/nsp31274H1274HcaCcaT1010B.1.5610.00397
ORF1ab/nsp31274H1274YCacTac1010B.1.5670.033333
ORF1ab/nsp31274H1274HcaCcaT1010B.1.617.10.00129
ORF1ab/nsp31274H1274YCacTac1010C.360.009107
ORF1ab/nsp31274H1274YCacTac99AY.1160.002581
ORF1ab/nsp31274H1274YCacTac99AY.190.010262
ORF1ab/nsp31274H1274delCAC---99AY.4.50.000967
ORF1ab/nsp31274H1274HcaCcaT99AY.46.60.00065
ORF1ab/nsp31274H1274YCacTac99AY.670.004178
ORF1ab/nsp31274H1274HcaCcaT99AY.740.001041
ORF1ab/nsp31274H1274YCacTac99P.1.140.00043
ORF1ab/nsp31274H1274YCacTac88AD.20.001752
ORF1ab/nsp31274H1274del1Cac-ac48All0.000001
ORF1ab/nsp31274H1274del1caCca-38All0.000001
ORF1ab/nsp31274H1274del1cAcc-c18All0
ORF1ab/nsp31274H1274delCAC---88AY.430.000035
ORF1ab/nsp31274H1274HcaCcaT88AY.9.20.000294
ORF1ab/nsp31274H1274YCacTac88AY.99.20.000737
ORF1ab/nsp31274H1274HcaCcaT88B.1.1.2840.000859
ORF1ab/nsp31274H1274HcaCcaT88B.1.1.3110.002865
ORF1ab/nsp31274H1274HcaCcaT88B.1.360.001167
ORF1ab/nsp31274H1274YCacTac78B.1.360.001021
ORF1ab/nsp31274H1274YCaCTaT18B.1.360.000146
ORF1ab/nsp31274H1274HcaCcaT88B.1.5250.000905
ORF1ab/nsp31274H1274YCacTac88B.1.5610.003176
ORF1ab/nsp31274H1274YCacTac88B.1.6090.003835
ORF1ab/nsp31274H1274YCacTac88B.1.617.10.001032
ORF1ab/nsp31274H1274YCacTac88C.36.30.004538
ORF1ab/nsp31274H1274HcaCcaT88C.370.000929
ORF1ab/nsp31274H1274YCacTac77AY.1070.003262
ORF1ab/nsp31274H1274RcAccGc77AY.1110.001282
ORF1ab/nsp31274H1274RcAccGc77AY.200.000272
ORF1ab/nsp31274H1274HcaCcaT77AY.370.002212
ORF1ab/nsp31274H1274YCacTac77AY.510.006364
ORF1ab/nsp31274H1274YCacTac77AY.920.002011
ORF1ab/nsp31274H1274HcaCcaT77AY.99.20.000645
ORF1ab/nsp31274H1274YCacTac77B.1.1.2140.000388
ORF1ab/nsp31274H1274YCacTac77B.1.1.4320.008861
ORF1ab/nsp31274H1274YCacTac77B.1.258.170.000728
ORF1ab/nsp31274H1274HcaCcaT77P.20.001306
ORF1ab/nsp31274H1274HcaCcaT66A.23.10.004225
ORF1ab/nsp31274H1274YCacTac66AY.100.00318
ORF1ab/nsp31274H1274HcaCcaT66AY.1130.000854
ORF1ab/nsp31274H1274NCacAac66AY.30.00006
ORF1ab/nsp31274H1274HcaCcaT66AY.3.10.000512
ORF1ab/nsp31274H1274HcaCcaT66AY.450.00073
ORF1ab/nsp31274H1274YCacTac66AY.46.40.000987
ORF1ab/nsp31274H1274HcaCcaT66AY.770.006764
ORF1ab/nsp31274H1274YCacTac66AY.90.000406
ORF1ab/nsp31274H1274HcaCcaT66AY.98.10.000291
ORF1ab/nsp31274H1274YCacTac66AZ.20.004926
ORF1ab/nsp31274H1274NCacAac66B.10.000055
ORF1ab/nsp31274H1274YCacTac66B.1.1.10.00196
ORF1ab/nsp31274H1274HcaCcaT66B.1.1.250.003411
ORF1ab/nsp31274H1274YCacTac66B.1.1.280.001867
ORF1ab/nsp31274H1274YCacTac66B.1.1.3180.001811
ORF1ab/nsp31274H1274HcaCcaT66B.1.1.370.001157
ORF1ab/nsp31274H1274RcAccGc66B.1.1.70.000005
ORF1ab/nsp31274H1274YCacTac66B.1.177.820.002864
ORF1ab/nsp31274H1274YCacTac66B.1.2210.000426
ORF1ab/nsp31274H1274PcAccCc66B.1.36.180.002521
ORF1ab/nsp31274H1274YCacTac66B.1.466.20.002347
ORF1ab/nsp31274H1274YCacTac66B.1.5750.00182
ORF1ab/nsp31274H1274HcaCcaT66B.1.5760.00544
ORF1ab/nsp31274H1274delCAC---66B.1.617.20.000023
ORF1ab/nsp31274H1274YCacTac66B.1.6190.005226
ORF1ab/nsp31274H1274YCacTac66B.1.6280.002114
ORF1ab/nsp31274H1274HcaCcaT66C.180.015544
ORF1ab/nsp31274H1274HcaCcaT66L.30.021277
ORF1ab/nsp31274H1274HcaCcaT66W.30.031579
ORF1ab/nsp31274H1274HcaCcaT55AY.1110.000916
ORF1ab/nsp31274H1274HcaCcaT55AY.1210.000677
ORF1ab/nsp31274H1274HcaCcaT55AY.240.002155
ORF1ab/nsp31274H1274YCacTac55AY.320.002662
ORF1ab/nsp31274H1274HcaCcaT55AY.39.10.000198
ORF1ab/nsp31274H1274YCacTac55AY.480.002326
ORF1ab/nsp31274H1274YCacTac55AY.640.002976
ORF1ab/nsp31274H1274YCacTac55AY.710.002375
ORF1ab/nsp31274H1274YCacTac55AY.800.005643
ORF1ab/nsp31274H1274YCacTac55AY.840.002187
ORF1ab/nsp31274H1274delCAC---55B.1.10.000091
ORF1ab/nsp31274H1274YCacTac55B.1.1.2220.00102
ORF1ab/nsp31274H1274HcaCcaT55B.1.1.3260.008803
ORF1ab/nsp31274H1274YCacTac55B.1.1.330.002104
ORF1ab/nsp31274H1274HcaCcaT55B.1.1.4120.038168
ORF1ab/nsp31274H1274HcaCcaT55B.1.1.4160.004525
ORF1ab/nsp31274H1274YCacTac55B.1.177.670.038168
ORF1ab/nsp31274H1274YCacTac55B.1.177.80.003762
ORF1ab/nsp31274H1274YCacTac55B.1.36.10.005701
ORF1ab/nsp31274H1274HcaCcaT55B.1.36.290.002587
ORF1ab/nsp31274H1274HcaCcaT55B.1.5750.001517
ORF1ab/nsp31274H1274DCacGac55B.1.617.20.000019
ORF1ab/nsp31274H1274YCacTac55Q.80.000825
ORF1ab/nsp31274H1274HcaCcaT55R.10.00045
ORF1ab/nsp31274H1274HcaCcaT44A.190.037736
ORF1ab/nsp31274H1274HcaCcaT44AD.20.000876
ORF1ab/nsp31274H1274YCacTac44AY.1040.007937
ORF1ab/nsp31274H1274YCacTac44AY.1060.00134
ORF1ab/nsp31274H1274YCacTac44AY.1100.000451
ORF1ab/nsp31274H1274YCacTac44AY.140.000352
ORF1ab/nsp31274H1274YCacTac44AY.380.001997
ORF1ab/nsp31274H1274QcaCcaG24AY.40.000003
ORF1ab/nsp31274H1274QcaCcaA24AY.40.000003
ORF1ab/nsp31274H1274YCacTac44AY.4.2.10.000596
ORF1ab/nsp31274H1274HcaCcaT44AY.420.000161
ORF1ab/nsp31274H1274HcaCcaT44AY.46.20.002541
ORF1ab/nsp31274H1274YCacTac44AY.5.40.001107
ORF1ab/nsp31274H1274HcaCcaT44AY.7.10.000451
ORF1ab/nsp31274H1274YCacTac44AY.7.20.002237
ORF1ab/nsp31274H1274YCacTac44AY.730.002661
ORF1ab/nsp31274H1274YCacTac44AY.770.00451
ORF1ab/nsp31274H1274HcaCcaT44AY.9.10.000335
ORF1ab/nsp31274H1274delCAC---44B.10.000037
ORF1ab/nsp31274H1274HcaCcaT44B.1.1.10.001307
ORF1ab/nsp31274H1274HcaCcaT44B.1.1.2090.035714
ORF1ab/nsp31274H1274HcaCcaT44B.1.1.2220.000816
ORF1ab/nsp31274H1274YCacTac44B.1.1.370.000771
ORF1ab/nsp31274H1274HcaCcaT44B.1.1.5210.02139
ORF1ab/nsp31274H1274DCacGac44B.1.1.70.000004
ORF1ab/nsp31274H1274del1Cac-ac34B.1.1.70.000003
ORF1ab/nsp31274H1274del1cAcc-c14B.1.1.70.000001
ORF1ab/nsp31274H1274YCacTac44B.1.1.700.001364
ORF1ab/nsp31274H1274YCacTac44B.1.1700.017241
ORF1ab/nsp31274H1274HcaCcaT44B.1.177.40.000844
ORF1ab/nsp31274H1274YCacTac44B.1.177.420.003578
ORF1ab/nsp31274H1274HcaCcaT44B.1.177.600.000874
ORF1ab/nsp31274H1274HcaCcaT44B.1.177.70.000659
ORF1ab/nsp31274H1274YCacTac44B.1.2140.014652
ORF1ab/nsp31274H1274YCacTac44B.1.258.30.0067
ORF1ab/nsp31274H1274HcaCcaT44B.1.3610.005155
ORF1ab/nsp31274H1274YCacTac44B.1.3980.011905
ORF1ab/nsp31274H1274YCacTac44B.1.466.10.028777
ORF1ab/nsp31274H1274NCacAac44B.1.5750.001214
ORF1ab/nsp31274H1274HcaCcaT44D.20.0003
ORF1ab/nsp31274H1274RcAccGc44P.10.000063
ORF1ab/nsp31274H1274YCacTac44P.1.20.004624
ORF1ab/nsp31274H1274YCacTac44P.1.70.001277
ORF1ab/nsp31274H1274YCacTac44P.60.012579
ORF1ab/nsp31274H1274HcaCcaT44Q.40.001819
ORF1ab/nsp31274H1274YCacTac44R.10.00036
ORF1ab/nsp31274H1274HcaCcaT33A0.001161
ORF1ab/nsp31274H1274HcaCcaT33A.2.50.001497
ORF1ab/nsp31274H1274DCacGac33AY.1000.000138
ORF1ab/nsp31274H1274HcaCcaT33AY.1080.003308
ORF1ab/nsp31274H1274YCacTac33AY.1130.000427
ORF1ab/nsp31274H1274YCacTac33AY.1140.000693
ORF1ab/nsp31274H1274YCacTac33AY.210.005693
ORF1ab/nsp31274H1274RcAccGc33AY.230.000209
ORF1ab/nsp31274H1274QcaCcaA33AY.250.000018
ORF1ab/nsp31274H1274delCAC---33AY.250.000018
ORF1ab/nsp31274H1274delCAC---33AY.290.000047
ORF1ab/nsp31274H1274YCacTac33AY.3.10.000256
ORF1ab/nsp31274H1274HcaCcaT33AY.4.40.001227
ORF1ab/nsp31274H1274DCacGac33AY.50.000062
ORF1ab/nsp31274H1274YCacTac33AY.500.002398
ORF1ab/nsp31274H1274HcaCcaT33AY.610.000314
ORF1ab/nsp31274H1274HcaCcaT33AY.720.004082
ORF1ab/nsp31274H1274YCacTac33AY.780.004622
ORF1ab/nsp31274H1274YCacTac33AY.80.001818
ORF1ab/nsp31274H1274YCacTac33B0.000383
ORF1ab/nsp31274H1274RcAccGc33B.10.000027
ORF1ab/nsp31274H1274YCacTac33B.1.1.1700.003741
ORF1ab/nsp31274H1274HcaCcaT33B.1.1.2160.002671
ORF1ab/nsp31274H1274YCacTac33B.1.1.500.002037
ORF1ab/nsp31274H1274HcaCcaT33B.1.1.5260.010638
ORF1ab/nsp31274H1274YCacTac33B.1.1.710.018182
ORF1ab/nsp31274H1274YCacTac33B.1.1570.008955
ORF1ab/nsp31274H1274delCAC---33B.1.1600.000094
ORF1ab/nsp31274H1274HcaCcaT33B.1.177.180.00348
ORF1ab/nsp31274H1274delCAC---33B.1.177.40.000633
ORF1ab/nsp31274H1274YCacTac33B.1.214.20.001799
ORF1ab/nsp31274H1274YCacTac33B.1.2250.046154
ORF1ab/nsp31274H1274YCacTac33B.1.2340.000396
ORF1ab/nsp31274H1274YCacTac33B.1.3400.012876
ORF1ab/nsp31274H1274HcaCcaT33B.1.36.170.001482
ORF1ab/nsp31274H1274delCAC---33B.1.36.170.001482
ORF1ab/nsp31274H1274HcaCcaT33B.1.36.360.001806
ORF1ab/nsp31274H1274YCacTac33B.1.3750.002459
ORF1ab/nsp31274H1274YCacTac33B.1.4000.001287
ORF1ab/nsp31274H1274HcaCcaT33B.1.4000.001287
ORF1ab/nsp31274H1274YCacTac33B.1.5680.003333
ORF1ab/nsp31274H1274HcaCcaT33B.1.6090.001438
ORF1ab/nsp31274H1274LcAccTc33B.1.617.20.000011
ORF1ab/nsp31274H1274RcAccGc33B.1.617.20.000011
ORF1ab/nsp31274H1274HcaCcaT33B.1.6230.001609
ORF1ab/nsp31274H1274YCacTac33B.1.6370.000219
ORF1ab/nsp31274H1274YCacTac33C.160.003181
ORF1ab/nsp31274H1274YCacTac33C.170.166667
ORF1ab/nsp31274H1274HcaCcaT33C.230.017442
ORF1ab/nsp31274H1274HcaCcaT33C.36.30.001702
ORF1ab/nsp31274H1274YCacTac33P.1.100.000808
ORF1ab/nsp31274H1274YCacTac33P.1.150.000697
ORF1ab/nsp31274H1274HcaCcaT33P.1.70.000958
ORF1ab/nsp31274H1274HcaCcaT33Q.30.000435
ORF1ab/nsp31274H1274YCacTac22A.2.50.000998
ORF1ab/nsp31274H1274LcAccTc22A.2.50.000998
ORF1ab/nsp31274H1274CCAcTGc22All0
ORF1ab/nsp31274H1274SCACTCT12All0
ORF1ab/nsp31274H1274VCAcGTc12All0
ORF1ab/nsp31274H1274VCACGTT12All0
ORF1ab/nsp31274H1274SCAcTCc12All0
ORF1ab/nsp31274H1274YCacTac22AY.1050.001286
ORF1ab/nsp31274H1274YCacTac22AY.1090.001479
ORF1ab/nsp31274H1274HcaCcaT22AY.1100.000225
ORF1ab/nsp31274H1274YCacTac22AY.1110.000366
ORF1ab/nsp31274H1274CCAcTGc22AY.120.000632
ORF1ab/nsp31274H1274YCacTac22AY.120.000632
ORF1ab/nsp31274H1274YCacTac22AY.120.20.002571
ORF1ab/nsp31274H1274HcaCcaT22AY.16.10.00094
ORF1ab/nsp31274H1274YCacTac22AY.29.10.000441
ORF1ab/nsp31274H1274YCacTac22AY.360.000296
ORF1ab/nsp31274H1274YCacTac22AY.39.20.003082
ORF1ab/nsp31274H1274YCacTac22AY.4.50.000215
ORF1ab/nsp31274H1274YCacTac22AY.46.20.001271
ORF1ab/nsp31274H1274HcaCcaT22AY.46.30.001867
ORF1ab/nsp31274H1274HcaCcaT22AY.480.00093
ORF1ab/nsp31274H1274YCacTac22AY.5.30.000675
ORF1ab/nsp31274H1274HcaCcaT22AY.5.30.000675
ORF1ab/nsp31274H1274HcaCcaT22AY.550.001835
ORF1ab/nsp31274H1274YCacTac22AY.570.001312
ORF1ab/nsp31274H1274HcaCcaT22AY.820.002714
ORF1ab/nsp31274H1274HcaCcaT22AY.890.009804
ORF1ab/nsp31274H1274HcaCcaT22AY.9.2.10.003953
ORF1ab/nsp31274H1274HcaCcaT22AY.950.001522
ORF1ab/nsp31274H1274YCacTac22AZ.10.001735
ORF1ab/nsp31274H1274HcaCcaT22B0.000256
ORF1ab/nsp31274H1274NCacAac22B.1.10.000036
ORF1ab/nsp31274H1274YCacTac22B.1.1.100.00223
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.1760.000879
ORF1ab/nsp31274H1274YCacTac22B.1.1.1810.009091
ORF1ab/nsp31274H1274RcAccGc22B.1.1.2300.018349
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.2410.004141
ORF1ab/nsp31274H1274YCacTac22B.1.1.2650.006309
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.2790.002242
ORF1ab/nsp31274H1274VCACGTT12B.1.1.3060.000438
ORF1ab/nsp31274H1274VCAcGTc12B.1.1.3060.000438
ORF1ab/nsp31274H1274YCacTac22B.1.1.3110.000716
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.330.000842
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.3680.006173
ORF1ab/nsp31274H1274YCacTac22B.1.1.3680.006173
ORF1ab/nsp31274H1274del2cACc--12B.1.1.370.000193
ORF1ab/nsp31274H1274del2CAc--c12B.1.1.370.000193
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.3720.001377
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.380.117647
ORF1ab/nsp31274H1274YCacTac22B.1.1.3890.012121
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.3890.012121
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.390.001019
ORF1ab/nsp31274H1274YCacTac22B.1.1.390.001019
ORF1ab/nsp31274H1274YCacTac22B.1.1.3970.004505
ORF1ab/nsp31274H1274YCacTac22B.1.1.4340.000697
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.4480.004065
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.5280.009615
ORF1ab/nsp31274H1274HcaCcaT22B.1.1.540.006042
ORF1ab/nsp31274H1274PcAccCc22B.1.1.70.000002
ORF1ab/nsp31274H1274del2cACc--22B.1.1.70.000002
ORF1ab/nsp31274H1274YCacTac22B.1.110.30.001437
ORF1ab/nsp31274H1274HcaCcaT22B.1.130.004751
ORF1ab/nsp31274H1274YCacTac22B.1.1470.001512
ORF1ab/nsp31274H1274HcaCcaT22B.1.1470.001512
ORF1ab/nsp31274H1274HcaCcaT22B.1.1570.00597
ORF1ab/nsp31274H1274YCacTac22B.1.177.240.002591
ORF1ab/nsp31274H1274YCacTac22B.1.177.40.000422
ORF1ab/nsp31274H1274YCacTac22B.1.177.440.001038
ORF1ab/nsp31274H1274HcaCcaT22B.1.177.650.001331
ORF1ab/nsp31274H1274delCAC---22B.1.177.70.00033
ORF1ab/nsp31274H1274YCacTac22B.1.177.730.001133
ORF1ab/nsp31274H1274HcaCcaT22B.1.177.810.000379
ORF1ab/nsp31274H1274YCacTac22B.1.177.810.000379
ORF1ab/nsp31274H1274HcaCcaT22B.1.177.860.000367
ORF1ab/nsp31274H1274YCacTac22B.1.177.890.04878
ORF1ab/nsp31274H1274HcaCcaT22B.1.1890.008584
ORF1ab/nsp31274H1274QcaCcaA22B.1.214.30.014286
ORF1ab/nsp31274H1274YCacTac22B.1.2320.001075
ORF1ab/nsp31274H1274HcaCcaT22B.1.2390.002442
ORF1ab/nsp31274H1274YCacTac22B.1.2400.000431
ORF1ab/nsp31274H1274HcaCcaT22B.1.2400.000431
ORF1ab/nsp31274H1274RcAccGc22B.1.2400.000431
ORF1ab/nsp31274H1274HcaCcaT22B.1.2410.001623
ORF1ab/nsp31274H1274YCacTac22B.1.2650.002541
ORF1ab/nsp31274H1274YCacTac22B.1.3130.013158
ORF1ab/nsp31274H1274HcaCcaT22B.1.3200.002491
ORF1ab/nsp31274H1274RcAccGc22B.1.3510.000059
ORF1ab/nsp31274H1274YCacTac22B.1.3560.003454
ORF1ab/nsp31274H1274HcaCcaT22B.1.362.20.009434
ORF1ab/nsp31274H1274HcaCcaT22B.1.3750.001639
ORF1ab/nsp31274H1274YCacTac22B.1.3960.001411
ORF1ab/nsp31274H1274HcaCcaT22B.1.3990.003868
ORF1ab/nsp31274H1274HcaCcaT22B.1.466.20.000782
ORF1ab/nsp31274H1274HcaCcaT22B.1.4990.002101
ORF1ab/nsp31274H1274HcaCcaT22B.1.5090.001732
ORF1ab/nsp31274H1274YCacTac22B.1.5090.001732
ORF1ab/nsp31274H1274YCacTac22B.1.5600.009259
ORF1ab/nsp31274H1274YCacTac22B.1.5650.001621
ORF1ab/nsp31274H1274HcaCcaT22B.1.5820.000981
ORF1ab/nsp31274H1274HcaCcaT22B.1.5950.000522
ORF1ab/nsp31274H1274YCacTac22B.1.5990.007299
ORF1ab/nsp31274H1274HcaCcaT22B.1.6120.005305
ORF1ab/nsp31274H1274QcaCcaA22B.1.617.20.000008
ORF1ab/nsp31274H1274HcaCcaT22B.1.6190.001742
ORF1ab/nsp31274H1274delCAC---22B.1.6210.000177
ORF1ab/nsp31274H1274YCacTac22B.1.6210.000177
ORF1ab/nsp31274H1274YCacTac22B.1.6250.004706
ORF1ab/nsp31274H1274YCacTac22B.1.88.10.009615
ORF1ab/nsp31274H1274HcaCcaT22B.450.007663
ORF1ab/nsp31274H1274HcaCcaT22N.50.003534
ORF1ab/nsp31274H1274HcaCcaT22P.1.100.000539
ORF1ab/nsp31274H1274YCacTac22P.1.170.000324
ORF1ab/nsp31274H1274PcAccCc22P.1.70.000639
ORF1ab/nsp31274H1274YCacTac22P.30.00319
ORF1ab/nsp31274H1274YCacTac22Q.10.000253
ORF1ab/nsp31274H1274HcaCcaT22Q.10.000253
ORF1ab/nsp31274H1274HcaCcaT22Q.80.00033
ORF1ab/nsp31274H1274SCAcTCc110.055556
ORF1ab/nsp31274H1274YCacTac110.055556
ORF1ab/nsp31274H1274PcAccCc110.055556
ORF1ab/nsp31274H1274YCacTac11A.20.000662
ORF1ab/nsp31274H1274PcAccCc11A.2.40.003367
ORF1ab/nsp31274H1274HcaCcaT11A.2.5.20.001572
ORF1ab/nsp31274H1274HcaCcaT11A.2.5.30.010309
ORF1ab/nsp31274H1274HcaCcaT11AB.10.008197
ORF1ab/nsp31274H1274QcaCcaA11AF.10.037037
ORF1ab/nsp31274H1274HcaCcaT11AH.30.003802
ORF1ab/nsp31274H1274KCaCAaA11All0
ORF1ab/nsp31274H1274ICAcATc11All0
ORF1ab/nsp31274H1274YCacTac11AM.40.003571
ORF1ab/nsp31274H1274HcaCcaT11AP.10.001502
ORF1ab/nsp31274H1274YCacTac11AP.10.001502
ORF1ab/nsp31274H1274YCacTac11AU.10.001266
ORF1ab/nsp31274H1274YCacTac11AU.30.00211
ORF1ab/nsp31274H1274HcaCcaT11AV.10.005051
ORF1ab/nsp31274H1274HcaCcaT11AY.100.00053
ORF1ab/nsp31274H1274HcaCcaT11AY.1010.00049
ORF1ab/nsp31274H1274LcAccTc11AY.1020.000027
ORF1ab/nsp31274H1274QcaCcaA11AY.1020.000027
ORF1ab/nsp31274H1274PcAccCc11AY.1030.000006
ORF1ab/nsp31274H1274RcAccGc11AY.1030.000006
ORF1ab/nsp31274H1274HcaCcaT11AY.1040.001984
ORF1ab/nsp31274H1274HcaCcaT11AY.1050.000643
ORF1ab/nsp31274H1274YCacTac11AY.1080.001103
ORF1ab/nsp31274H1274YCacTac11AY.110.001339
ORF1ab/nsp31274H1274HcaCcaT11AY.1140.000231
ORF1ab/nsp31274H1274HcaCcaT11AY.1160.000287
ORF1ab/nsp31274H1274HcaCcaT11AY.1180.000063
ORF1ab/nsp31274H1274LcAccTc11AY.1180.000063
ORF1ab/nsp31274H1274HcaCcaT11AY.120.000316
ORF1ab/nsp31274H1274delCAC---11AY.1200.000037
ORF1ab/nsp31274H1274NCacAac11AY.1200.000037
ORF1ab/nsp31274H1274del2cACc--11AY.1200.000037
ORF1ab/nsp31274H1274HcaCcaT11AY.120.20.001285
ORF1ab/nsp31274H1274HcaCcaT11AY.120.2.10.000498
ORF1ab/nsp31274H1274HcaCcaT11AY.160.00038
ORF1ab/nsp31274H1274HcaCcaT11AY.190.00114
ORF1ab/nsp31274H1274delCAC---11AY.190.00114
ORF1ab/nsp31274H1274HcaCcaT11AY.20.000356
ORF1ab/nsp31274H1274YCacTac11AY.23.10.000417
ORF1ab/nsp31274H1274del1caCca-11AY.250.000006
ORF1ab/nsp31274H1274RcAccGc11AY.250.000006
ORF1ab/nsp31274H1274RcAccGc11AY.260.000028
ORF1ab/nsp31274H1274RcAccGc11AY.290.000016
ORF1ab/nsp31274H1274LcAccTc11AY.30.00001
ORF1ab/nsp31274H1274DCacGac11AY.30.00001
ORF1ab/nsp31274H1274HcaCcaT11AY.320.000532
ORF1ab/nsp31274H1274YCacTac11AY.34.10.00051
ORF1ab/nsp31274H1274HcaCcaT11AY.34.10.00051
ORF1ab/nsp31274H1274delCAC---11AY.350.000233
ORF1ab/nsp31274H1274RcAccGc11AY.360.000148
ORF1ab/nsp31274H1274del1caCca-11AY.390.000025
ORF1ab/nsp31274H1274RcAccGc11AY.390.000025
ORF1ab/nsp31274H1274DCacGac11AY.40.000002
ORF1ab/nsp31274H1274del2CAc--c11AY.40.000002
ORF1ab/nsp31274H1274PcAccCc11AY.4.20.000022
ORF1ab/nsp31274H1274HcaCcaT11AY.4.2.10.000149
ORF1ab/nsp31274H1274HcaCcaT11AY.4.30.000842
ORF1ab/nsp31274H1274RcAccGc11AY.430.000004
ORF1ab/nsp31274H1274DCacGac11AY.440.000006
ORF1ab/nsp31274H1274delCAC---11AY.460.000104
ORF1ab/nsp31274H1274HcaCcaT11AY.46.10.001027
ORF1ab/nsp31274H1274delCAC---11AY.46.20.000635
ORF1ab/nsp31274H1274YCacTac11AY.46.50.000198
ORF1ab/nsp31274H1274HcaCcaT11AY.46.50.000198
ORF1ab/nsp31274H1274RcAccGc11AY.50.000021
ORF1ab/nsp31274H1274PcAccCc11AY.50.000021
ORF1ab/nsp31274H1274delCAC---11AY.50.000021
ORF1ab/nsp31274H1274HcaCcaT11AY.530.000288
ORF1ab/nsp31274H1274HcaCcaT11AY.570.000656
ORF1ab/nsp31274H1274delCAC---11AY.60.000041
ORF1ab/nsp31274H1274RcAccGc11AY.60.000041
ORF1ab/nsp31274H1274delCAC---11AY.600.000938
ORF1ab/nsp31274H1274YCacTac11AY.600.000938
ORF1ab/nsp31274H1274YCacTac11AY.630.000387
ORF1ab/nsp31274H1274delCAC---11AY.660.00107
ORF1ab/nsp31274H1274NCacAac11AY.690.000187
ORF1ab/nsp31274H1274YCacTac11AY.690.000187
ORF1ab/nsp31274H1274HcaCcaT11AY.7.20.000559
ORF1ab/nsp31274H1274HcaCcaT11AY.700.000209
ORF1ab/nsp31274H1274RcAccGc11AY.710.000475
ORF1ab/nsp31274H1274HcaCcaT11AY.710.000475
ORF1ab/nsp31274H1274delCAC---11AY.720.001361
ORF1ab/nsp31274H1274delCAC---11AY.75.10.00018
ORF1ab/nsp31274H1274HcaCcaT11AY.75.10.00018
ORF1ab/nsp31274H1274HcaCcaT11AY.780.001541
ORF1ab/nsp31274H1274YCacTac11AY.790.001211
ORF1ab/nsp31274H1274HcaCcaT11AY.790.001211
ORF1ab/nsp31274H1274del2CAc--c11AY.790.001211
ORF1ab/nsp31274H1274YCacTac11AY.810.001992
ORF1ab/nsp31274H1274YCacTac11AY.830.001724
ORF1ab/nsp31274H1274HcaCcaT11AY.840.000437
ORF1ab/nsp31274H1274YCacTac11AY.870.000833
ORF1ab/nsp31274H1274YCacTac11AY.880.000884
ORF1ab/nsp31274H1274HcaCcaT11AY.90.000068
ORF1ab/nsp31274H1274delCAC---11AY.90.000068
ORF1ab/nsp31274H1274HcaCcaT11AY.910.00073
ORF1ab/nsp31274H1274HcaCcaT11AY.920.000287
ORF1ab/nsp31274H1274HcaCcaT11AY.930.000273
ORF1ab/nsp31274H1274YCacTac11AY.950.000761
ORF1ab/nsp31274H1274QcaCcaA11AY.980.000079
ORF1ab/nsp31274H1274YCacTac11AY.990.001049
ORF1ab/nsp31274H1274HcaCcaT11AY.990.001049
ORF1ab/nsp31274H1274YCacTac11AY.99.10.001553
ORF1ab/nsp31274H1274NCacAac11AY.99.20.000092
ORF1ab/nsp31274H1274HcaCcaT11AZ.20.000821
ORF1ab/nsp31274H1274del2CAc--c11B.10.000009
ORF1ab/nsp31274H1274LcAccTc11B.10.000009
ORF1ab/nsp31274H1274YCacTac11B.1.1.1110.014706
ORF1ab/nsp31274H1274YCacTac11B.1.1.1330.008475
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.1410.002012
ORF1ab/nsp31274H1274YCacTac11B.1.1.1590.004673
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.1630.007634
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.1800.010753
ORF1ab/nsp31274H1274LcAccTc11B.1.1.1890.001513
ORF1ab/nsp31274H1274YCacTac11B.1.1.2030.016949
ORF1ab/nsp31274H1274YCacTac11B.1.1.2050.003717
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.2070.001182
ORF1ab/nsp31274H1274RcAccGc11B.1.1.2140.000055
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.2210.010101
ORF1ab/nsp31274H1274YCacTac11B.1.1.2690.001353
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.2770.000759
ORF1ab/nsp31274H1274YCacTac11B.1.1.2800.003086
ORF1ab/nsp31274H1274YCacTac11B.1.1.3030.002762
ORF1ab/nsp31274H1274YCacTac11B.1.1.3060.000438
ORF1ab/nsp31274H1274YCacTac11B.1.1.3070.002532
ORF1ab/nsp31274H1274delCAC---11B.1.1.3110.000358
ORF1ab/nsp31274H1274delCAC---11B.1.1.3120.001912
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.3160.000925
ORF1ab/nsp31274H1274YCacTac11B.1.1.3170.000412
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.3240.052632
ORF1ab/nsp31274H1274YCacTac11B.1.1.3330.001076
ORF1ab/nsp31274H1274YCacTac11B.1.1.3350.012987
ORF1ab/nsp31274H1274YCacTac11B.1.1.3480.000796
ORF1ab/nsp31274H1274delCAC---11B.1.1.3480.000796
ORF1ab/nsp31274H1274YCacTac11B.1.1.3510.002793
ORF1ab/nsp31274H1274YCacTac11B.1.1.3540.004386
ORF1ab/nsp31274H1274YCacTac11B.1.1.3550.015385
ORF1ab/nsp31274H1274delCAC---11B.1.1.3610.045455
ORF1ab/nsp31274H1274YCacTac11B.1.1.3690.000446
ORF1ab/nsp31274H1274delCAC---11B.1.1.370.000193
ORF1ab/nsp31274H1274YCacTac11B.1.1.3720.000689
ORF1ab/nsp31274H1274YCacTac11B.1.1.3740.002375
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.3770.001381
ORF1ab/nsp31274H1274delCAC---11B.1.1.390.00051
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.3980.003226
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4070.041667
ORF1ab/nsp31274H1274delCAC---11B.1.1.4090.002833
ORF1ab/nsp31274H1274YCacTac11B.1.1.4090.002833
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4090.002833
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4170.002703
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4180.022727
ORF1ab/nsp31274H1274QcaCcaA11B.1.1.4200.001006
ORF1ab/nsp31274H1274YCacTac11B.1.1.4200.001006
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4200.001006
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4340.000349
ORF1ab/nsp31274H1274RcAccGc11B.1.1.4340.000349
ORF1ab/nsp31274H1274delCAC---11B.1.1.440.00241
ORF1ab/nsp31274H1274YCacTac11B.1.1.4420.018519
ORF1ab/nsp31274H1274YCacTac11B.1.1.4480.002033
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.4640.001473
ORF1ab/nsp31274H1274YCacTac11B.1.1.4870.005587
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.5070.008696
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.5170.006803
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.5180.006329
ORF1ab/nsp31274H1274YCacTac11B.1.1.5180.006329
ORF1ab/nsp31274H1274QcaCcaA11B.1.1.5190.00004
ORF1ab/nsp31274H1274YCacTac11B.1.1.5230.001563
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.5230.001563
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.580.005376
ORF1ab/nsp31274H1274YCacTac11B.1.1.630.000386
ORF1ab/nsp31274H1274QcaCcaG11B.1.1.70.000001
ORF1ab/nsp31274H1274LcAccTc11B.1.1.70.000001
ORF1ab/nsp31274H1274ICAcATc11B.1.1.70.000001
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.700.000341
ORF1ab/nsp31274H1274YCacTac11B.1.1.740.00431
ORF1ab/nsp31274H1274HcaCcaT11B.1.1.890.006061
ORF1ab/nsp31274H1274YCacTac11B.1.1.990.02381
ORF1ab/nsp31274H1274YCacTac11B.1.1080.005814
ORF1ab/nsp31274H1274YCacTac11B.1.1110.001175
ORF1ab/nsp31274H1274YCacTac11B.1.1260.001276
ORF1ab/nsp31274H1274YCacTac11B.1.1280.000635
ORF1ab/nsp31274H1274HcaCcaT11B.1.1280.000635
ORF1ab/nsp31274H1274YCacTac11B.1.1510.011111
ORF1ab/nsp31274H1274YCacTac11B.1.160.140.002119
ORF1ab/nsp31274H1274YCacTac11B.1.160.260.002421
ORF1ab/nsp31274H1274HcaCcaT11B.1.160.300.002976
ORF1ab/nsp31274H1274QcaCcaA11B.1.1770.000013
ORF1ab/nsp31274H1274del2cACc--11B.1.1770.000013
ORF1ab/nsp31274H1274LcAccTc11B.1.1770.000013
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.100.000878
ORF1ab/nsp31274H1274delCAC---11B.1.177.110.001698
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.150.000631
ORF1ab/nsp31274H1274delCAC---11B.1.177.150.000631
ORF1ab/nsp31274H1274YCacTac11B.1.177.160.000664
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.160.000664
ORF1ab/nsp31274H1274del2cACc--11B.1.177.170.000821
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.210.000076
ORF1ab/nsp31274H1274YCacTac11B.1.177.210.000076
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.420.000894
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.460.000918
ORF1ab/nsp31274H1274YCacTac11B.1.177.460.000918
ORF1ab/nsp31274H1274delCAC---11B.1.177.510.004566
ORF1ab/nsp31274H1274YCacTac11B.1.177.540.000606
ORF1ab/nsp31274H1274delCAC---11B.1.177.540.000606
ORF1ab/nsp31274H1274RcAccGc11B.1.177.560.000668
ORF1ab/nsp31274H1274delCAC---11B.1.177.570.000281
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.570.000281
ORF1ab/nsp31274H1274YCacTac11B.1.177.570.000281
ORF1ab/nsp31274H1274YCacTac11B.1.177.600.000218
ORF1ab/nsp31274H1274delCAC---11B.1.177.600.000218
ORF1ab/nsp31274H1274delCAC---11B.1.177.630.002703
ORF1ab/nsp31274H1274del2cACc--11B.1.177.70.000165
ORF1ab/nsp31274H1274NCacAac11B.1.177.70.000165
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.700.005917
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.720.00339
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.730.000566
ORF1ab/nsp31274H1274YCacTac11B.1.177.750.001041
ORF1ab/nsp31274H1274HcaCcaT11B.1.177.770.000726
ORF1ab/nsp31274H1274delCAC---11B.1.177.830.001481
ORF1ab/nsp31274H1274delCAC---11B.1.177.870.000728
ORF1ab/nsp31274H1274LcAccTc11B.1.177.90.001332
ORF1ab/nsp31274H1274YCacTac11B.1.1990.004132
ORF1ab/nsp31274H1274RcAccGc11B.1.20.000009
ORF1ab/nsp31274H1274YCacTac11B.1.2060.000816
ORF1ab/nsp31274H1274PcACcCT11B.1.2100.002132
ORF1ab/nsp31274H1274YCacTac11B.1.214.10.02
ORF1ab/nsp31274H1274HcaCcaT11B.1.220.001318
ORF1ab/nsp31274H1274delCAC---11B.1.221.10.002907
ORF1ab/nsp31274H1274HcaCcaT11B.1.221.30.000833
ORF1ab/nsp31274H1274delCAC---11B.1.2580.000067
ORF1ab/nsp31274H1274delCAC---11B.1.258.100.011364
ORF1ab/nsp31274H1274YCacTac11B.1.258.110.000396
ORF1ab/nsp31274H1274HcaCcaT11B.1.258.30.001675
ORF1ab/nsp31274H1274HcaCcaT11B.1.2760.016949
ORF1ab/nsp31274H1274YCacTac11B.1.3110.000275
ORF1ab/nsp31274H1274YCacTac11B.1.3150.006061
ORF1ab/nsp31274H1274YCacTac11B.1.3200.001245
ORF1ab/nsp31274H1274YCacTac11B.1.3240.001605
ORF1ab/nsp31274H1274HcaCcaT11B.1.3490.000715
ORF1ab/nsp31274H1274HcaCcaT11B.1.351.50.0006
ORF1ab/nsp31274H1274RcAccGc11B.1.36.160.001425
ORF1ab/nsp31274H1274HcaCcaT11B.1.36.180.00042
ORF1ab/nsp31274H1274YCacTac11B.1.36.240.006173
ORF1ab/nsp31274H1274HcaCcaT11B.1.36.260.002857
ORF1ab/nsp31274H1274YCacTac11B.1.36.270.000763
ORF1ab/nsp31274H1274YCacTac11B.1.36.280.005747
ORF1ab/nsp31274H1274YCacTac11B.1.36.290.000517
ORF1ab/nsp31274H1274HcaCcaT11B.1.36.310.001751
ORF1ab/nsp31274H1274YCacTac11B.1.36.390.002217
ORF1ab/nsp31274H1274YCacTac11B.1.36.90.003215
ORF1ab/nsp31274H1274del2CAc--c11B.1.3620.001541
ORF1ab/nsp31274H1274HcaCcaT11B.1.3670.000792
ORF1ab/nsp31274H1274YCacTac11B.1.3770.004566
ORF1ab/nsp31274H1274delCAC---11B.1.3890.001002
ORF1ab/nsp31274H1274YCacTac11B.1.3990.001934
ORF1ab/nsp31274H1274YCacTac11B.1.400.10.015152
ORF1ab/nsp31274H1274delCAC---11B.1.4090.000781
ORF1ab/nsp31274H1274YCacTac11B.1.415.10.007576
ORF1ab/nsp31274H1274HcaCcaT11B.1.4200.010417
ORF1ab/nsp31274H1274HcaCcaT11B.1.4220.000812
ORF1ab/nsp31274H1274RcAccGc11B.1.4280.00102
ORF1ab/nsp31274H1274del2CAc--c11B.1.4290.000024
ORF1ab/nsp31274H1274RcAccGc11B.1.438.10.000107
ORF1ab/nsp31274H1274HcaCcaT11B.1.438.20.019231
ORF1ab/nsp31274H1274HcaCcaT11B.1.4410.009615
ORF1ab/nsp31274H1274YCacTac11B.1.4590.004082
ORF1ab/nsp31274H1274YCacTac11B.1.4620.007246
ORF1ab/nsp31274H1274HcaCcaT11B.1.4690.00361
ORF1ab/nsp31274H1274YCacTac11B.1.4700.001404
ORF1ab/nsp31274H1274YCacTac11B.1.4970.000315
ORF1ab/nsp31274H1274YCacTac11B.1.4990.00105
ORF1ab/nsp31274H1274HcaCcaT11B.1.5110.034483
ORF1ab/nsp31274H1274HcaCcaT11B.1.5230.002451
ORF1ab/nsp31274H1274QcaCcaG11B.1.5260.000024
ORF1ab/nsp31274H1274HcaCcaT11B.1.5270.003704
ORF1ab/nsp31274H1274YCacTac11B.1.5300.007143
ORF1ab/nsp31274H1274YCacTac11B.1.5440.006024
ORF1ab/nsp31274H1274YCacTac11B.1.5510.00129
ORF1ab/nsp31274H1274YCacTac11B.1.5640.000426
ORF1ab/nsp31274H1274HcaCcaT11B.1.5640.000426
ORF1ab/nsp31274H1274KCaCAaA11B.1.5770.000687
ORF1ab/nsp31274H1274YCacTac11B.1.5820.000491
ORF1ab/nsp31274H1274HcaCcaT11B.1.5880.00091
ORF1ab/nsp31274H1274YCacTac11B.1.5880.00091
ORF1ab/nsp31274H1274HcaCcaT11B.1.5900.004545
ORF1ab/nsp31274H1274HcaCcaT11B.1.6060.006024
ORF1ab/nsp31274H1274del1caCca-11B.1.617.10.000129
ORF1ab/nsp31274H1274DCacGac11B.1.617.10.000129
ORF1ab/nsp31274H1274NCacAac11B.1.617.20.000004
ORF1ab/nsp31274H1274del2CAc--c11B.1.617.20.000004
ORF1ab/nsp31274H1274del1Cac-ac11B.1.617.20.000004
ORF1ab/nsp31274H1274HcaCcaT11B.1.617.30.002985
ORF1ab/nsp31274H1274delCAC---11B.1.617.30.002985
ORF1ab/nsp31274H1274del2CAc--c11B.1.6200.000946
ORF1ab/nsp31274H1274YCacTac11B.1.6200.000946
ORF1ab/nsp31274H1274YCacTac11B.1.621.10.000506
ORF1ab/nsp31274H1274HcaCcaT11B.1.6250.002353
ORF1ab/nsp31274H1274delCAC---11B.1.6300.005236
ORF1ab/nsp31274H1274HcaCcaT11B.1.6340.003425
ORF1ab/nsp31274H1274YCacTac11B.1.9.50.005682
ORF1ab/nsp31274H1274HcaCcaT11B.3.10.001658
ORF1ab/nsp31274H1274YCacTac11B.310.003731
ORF1ab/nsp31274H1274delCAC---11B.340.013699
ORF1ab/nsp31274H1274HcaCcaT11B.4.50.011905
ORF1ab/nsp31274H1274HcaCcaT11B.400.000364
ORF1ab/nsp31274H1274HcaCcaT11B.60.00091
ORF1ab/nsp31274H1274HcaCcaT11C.10.002392
ORF1ab/nsp31274H1274YCacTac11C.10.002392
ORF1ab/nsp31274H1274YCacTac11C.180.002591
ORF1ab/nsp31274H1274YCacTac11C.300.001727
ORF1ab/nsp31274H1274SCACTCT11C.350.000774
ORF1ab/nsp31274H1274delCAC---11C.360.000911
ORF1ab/nsp31274H1274YCacTac11C.400.027778
ORF1ab/nsp31274H1274YCacTac11D.30.005917
ORF1ab/nsp31274H1274YCacTac11N.50.001767
ORF1ab/nsp31274H1274DCacGac11P.10.000016
ORF1ab/nsp31274H1274delCAC---11P.10.000016
ORF1ab/nsp31274H1274PcAccCc11P.10.000016
ORF1ab/nsp31274H1274delCAC---11P.1.10.000318
ORF1ab/nsp31274H1274HcaCcaT11P.1.10.10.00813
ORF1ab/nsp31274H1274HcaCcaT11P.1.90.004808
ORF1ab/nsp31274H1274YCacTac11P.70.004367
ORF1ab/nsp31274H1274delCAC---11Q.10.000126
ORF1ab/nsp31274H1274delCAC---11Q.20.000613
ORF1ab/nsp31274H1274HcaCcaT11Q.20.000613
ORF1ab/nsp31274H1274YCacTac11Q.40.000455
ORF1ab/nsp31274H1274delCAC---11U.30.003861
ORF1ab/nsp31274H1274delCAC---11W.40.001351