CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1274 | H1274Y | H2092Y | nonsyn | Cac | Tac | 24712 | 24696 | 0.999353 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274Y | H2092Y | nonsyn | CaC | TaT | 24712 | 16 | 0.000647459 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274H | H2092H | syn | caC | caT | 12967 | 12967 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del | H2092del | del | CAC | --- | 263 | 263 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274R | H2092R | nonsyn | cAc | cGc | 206 | 206 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274N | H2092N | nonsyn | Cac | Aac | 130 | 130 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274L | H2092L | nonsyn | cAc | cTc | 59 | 59 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274P | H2092P | nonsyn | cAc | cCc | 36 | 35 | 0.972222 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274P | H2092P | nonsyn | cAC | cCT | 36 | 1 | 0.0277778 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274D | H2092D | nonsyn | Cac | Gac | 31 | 31 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274Q | H2092Q | nonsyn | caC | caA | 29 | 25 | 0.862069 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274Q | H2092Q | nonsyn | caC | caG | 29 | 4 | 0.137931 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del2 | H2092del2 | del | CAc | --c | 15 | 8 | 0.533333 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del2 | H2092del2 | del | cAC | c-- | 15 | 7 | 0.466667 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del1 | H2092del1 | del | Cac | -ac | 8 | 4 | 0.5 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del1 | H2092del1 | del | caC | ca- | 8 | 3 | 0.375 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274del1 | H2092del1 | del | cAc | c-c | 8 | 1 | 0.125 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274C | H2092C | nonsyn | CAc | TGc | 2 | 2 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274S | H2092S | nonsyn | CAc | TCc | 2 | 1 | 0.5 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274S | H2092S | nonsyn | CAC | TCT | 2 | 1 | 0.5 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274V | H2092V | nonsyn | CAC | GTT | 2 | 1 | 0.5 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274V | H2092V | nonsyn | CAc | GTc | 2 | 1 | 0.5 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274I | H2092I | nonsyn | CAc | ATc | 1 | 1 | 1 | 6539-6541 |
ORF1ab/nsp3 | 1274 | H1274K | H2092K | nonsyn | CaC | AaA | 1 | 1 | 1 | 6539-6541 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 24696 | 24712 | All | 0.004723 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 16 | 24712 | All | 0.000003 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 12967 | 12967 | All | 0.00248 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10469 | 10471 | B.1.617.2 | 0.03942 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 2 | 10471 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3946 | 3946 | P.1 | 0.062165 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2267 | 2267 | AY.30 | 0.897111 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2059 | 2060 | B.1.1.7 | 0.001843 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 2060 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1255 | 1255 | B.1.1.7 | 0.001124 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 948 | 949 | AY.4 | 0.001475 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 949 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 820 | 820 | AY.40 | 0.790743 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 774 | 774 | B.1.426 | 0.781029 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 707 | 707 | B.1 | 0.006476 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 653 | 653 | AY.4 | 0.001016 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 569 | 569 | AY.25 | 0.003422 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 513 | 513 | B.1.160 | 0.015999 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 448 | 448 | B.1.127 | 0.984615 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 436 | 436 | AY.103 | 0.002707 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 430 | 430 | Q.3 | 0.062364 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 382 | 382 | B.1.1.519 | 0.01517 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 324 | 324 | B.1.243 | 0.022545 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 306 | 306 | AY.9.2 | 0.011239 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 288 | 288 | AY.4.2 | 0.006246 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 277 | 277 | A.28 | 0.732804 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 274 | 274 | B.1.617.2 | 0.001032 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 270 | 270 | AY.43 | 0.001196 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 263 | 263 | All | 0.00005 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 252 | 252 | AY.5 | 0.005204 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 251 | 251 | AY.70 | 0.052335 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 243 | 243 | AY.20 | 0.009444 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 229 | 229 | B.1.2 | 0.002016 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 228 | 228 | AY.103 | 0.001416 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 206 | 206 | All | 0.000039 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 200 | 200 | AY.88 | 0.176835 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 198 | 198 | B.1 | 0.001814 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 198 | 198 | B.1.2 | 0.001743 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 190 | 190 | AY.6 | 0.007814 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 167 | 167 | AY.3 | 0.001661 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 156 | 156 | B.1.429 | 0.003671 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 139 | 139 | AY.44 | 0.000846 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 131 | 131 | A | 0.050697 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 130 | 130 | All | 0.000025 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 130 | 130 | B.1.1.7 | 0.000116 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 126 | 126 | AY.39 | 0.003114 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 122 | 122 | AY.44 | 0.000743 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 122 | 122 | B.1.36.8 | 0.122 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 116 | 116 | AY.16.1 | 0.054511 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 115 | 116 | AY.61 | 0.012049 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 116 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 110 | 110 | B.1.177 | 0.001448 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 105 | 105 | B.1.160 | 0.003275 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 96 | 96 | AY.68 | 0.02628 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 93 | 93 | B.1.1 | 0.001687 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 87 | 87 | AY.7 | 0.017052 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 85 | 85 | B.1.234 | 0.011215 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 82 | 82 | B.1.526 | 0.001927 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 81 | 81 | AY.74 | 0.009367 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 80 | 80 | B.1.534 | 1 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 79 | 79 | AY.120 | 0.002937 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 75 | 77 | AY.25 | 0.000451 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 2 | 77 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 76 | 76 | AY.43 | 0.000337 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 72 | 74 | P.1 | 0.001134 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 2 | 74 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 71 | 71 | AY.119 | 0.002507 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 70 | 70 | AY.102 | 0.001856 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 69 | 69 | AY.3 | 0.000686 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 68 | 68 | B.1.1.348 | 0.05414 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 68 | 68 | B.1.1.519 | 0.0027 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 66 | 66 | B.1.1.10 | 0.073579 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 65 | 65 | AY.4 | 0.000101 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 64 | 64 | B.1.1.214 | 0.003549 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 62 | 62 | B.1.1 | 0.001125 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 59 | 59 | All | 0.000011 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 59 | 59 | AY.26 | 0.00167 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 59 | 59 | B.1.351 | 0.001754 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 57 | 57 | AY.33 | 0.003806 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 57 | 57 | AY.47 | 0.001773 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 57 | 57 | AY.75 | 0.003193 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 57 | 57 | B.1.351 | 0.001694 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 57 | 57 | B.1.525 | 0.00645 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 56 | 56 | AY.13 | 0.009015 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 56 | 56 | B.1.177 | 0.000737 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 54 | 56 | B.1.429 | 0.001271 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 2 | 56 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 54 | 54 | AY.20 | 0.002099 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 50 | 50 | B.1.1.432 | 0.063291 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 48 | 48 | AY.31 | 0.888889 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 48 | 48 | AY.65 | 0.025586 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 47 | 47 | AU.3 | 0.099156 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 46 | 46 | AY.44 | 0.00028 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 46 | 46 | B.1.524 | 0.064698 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 46 | 46 | B.1.526 | 0.001081 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 45 | 45 | P.2 | 0.008399 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 44 | 44 | AY.29 | 0.000694 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 43 | 43 | AY.46 | 0.004475 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 43 | 43 | AY.75.1 | 0.007753 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 42 | 43 | B.1.177.86 | 0.007705 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 43 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 42 | 42 | AY.46.6 | 0.003033 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 40 | 40 | AY.34 | 0.003879 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 40 | 40 | AY.54 | 0.003814 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 40 | 40 | P.1.12 | 0.019361 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 39 | 39 | B.1.427 | 0.001969 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 37 | 37 | AY.5 | 0.000764 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 35 | 36 | All | 0.000007 |
ORF1ab/nsp3 | 1274 | H1274P | cAC | cCT | 1 | 36 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 36 | 36 | AY.56 | 0.057785 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 34 | 34 | AY.102 | 0.000901 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 33 | 33 | AY.41 | 0.0097 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 33 | 33 | B.1.427 | 0.001666 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 32 | 32 | B.1.619.1 | 0.020526 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 32 | 32 | B.1.621 | 0.002833 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 32 | 32 | B.1.91 | 0.06639 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 31 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 31 | 31 | AY.121 | 0.004195 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 31 | 31 | AY.4.2 | 0.000672 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 30 | 30 | AY.59 | 0.01589 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 30 | 30 | AZ.1 | 0.026019 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 30 | 30 | B.1.221 | 0.002131 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 25 | 29 | All | 0.000005 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caG | 4 | 29 | All | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 29 | 29 | AY.9.1 | 0.002428 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 29 | 29 | B.1.1.284 | 0.003115 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 28 | 28 | AY.49 | 0.089457 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 28 | 28 | B.1.221.3 | 0.023333 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 27 | 27 | AY.54 | 0.002574 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 26 | 27 | D.2 | 0.001951 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 27 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 26 | 26 | AY.39.1 | 0.00103 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 25 | 25 | AY.27 | 0.001618 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 25 | 25 | B.1.1.28 | 0.007781 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 24 | 24 | B.1.258 | 0.001597 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 23 | 23 | B.1.258 | 0.001531 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 23 | 23 | P.1.1 | 0.007306 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 22 | 22 | AY.117 | 0.001859 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 22 | 22 | AY.120 | 0.000818 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 22 | 22 | B.1.1.47 | 0.117647 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 22 | 22 | B.1.214.2 | 0.013189 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 22 | 22 | B.1.258.17 | 0.002287 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 22 | 22 | C.37 | 0.002553 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 21 | 21 | AY.4.5 | 0.002257 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 21 | 21 | B.1.263 | 1 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 19 | 21 | B.1.438.1 | 0.002038 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 2 | 21 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 20 | 20 | AY.117 | 0.00169 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 20 | 20 | AY.46 | 0.002082 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 20 | 20 | B.1.1.306 | 0.008768 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 20 | 20 | P.1.15 | 0.004647 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 19 | 19 | AY.6 | 0.000781 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 19 | 19 | AY.91 | 0.013879 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 19 | 19 | B.1.351.2 | 0.005749 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 18 | 18 | B.1.177.18 | 0.020882 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 18 | 18 | B.1.595 | 0.004697 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 17 | 17 | C.1.2 | 0.07234 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 16 | 16 | AY.52 | 0.013029 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 16 | 16 | B.1.369 | 0.004564 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 16 | 16 | B.1.577 | 0.010997 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 16 | 16 | B.1.619.1 | 0.010263 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 16 | 16 | P.1.16 | 0.005986 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 8 | 15 | All | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 7 | 15 | All | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | AY.106 | 0.005023 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 15 | 15 | AY.116 | 0.004302 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 15 | 15 | AY.23 | 0.001046 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 15 | 15 | AY.55 | 0.013761 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | B.1.1.157 | 0.013699 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | B.1.177.6 | 0.014648 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 15 | 15 | B.1.351.2 | 0.004539 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | B.1.409 | 0.011719 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 14 | 14 | AY.16 | 0.005315 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 14 | 14 | AY.37 | 0.004425 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 14 | 14 | B.1.1.155 | 1 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 14 | 14 | B.1.1.262 | 0.212121 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 13 | 13 | AY.58 | 0.011797 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 13 | 13 | AY.98 | 0.001027 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 13 | 13 | B.1.426 | 0.013118 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 13 | 13 | B.1.517 | 0.005551 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | AY.41 | 0.003527 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | AY.53 | 0.00345 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | AY.62 | 0.005229 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 12 | 12 | AY.67 | 0.005571 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | AY.7.1 | 0.001352 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | B.1.1.61 | 0.105263 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | B.1.177.12 | 0.00182 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 12 | 12 | B.1.177.82 | 0.005728 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 11 | 11 | AY.14 | 0.000968 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 11 | 11 | AY.34 | 0.001067 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.24 | 0.00431 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.28 | 0.018904 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.85 | 0.004272 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.86 | 0.008299 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | B.1.1.317 | 0.004117 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | B.1.177.56 | 0.006676 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 10 | 10 | B.1.416 | 0.01269 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | B.1.561 | 0.00397 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | B.1.567 | 0.033333 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 10 | 10 | C.36 | 0.009107 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 9 | 9 | AY.116 | 0.002581 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 9 | 9 | AY.19 | 0.010262 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 9 | 9 | AY.67 | 0.004178 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | AD.2 | 0.001752 |
ORF1ab/nsp3 | 1274 | H1274del1 | Cac | -ac | 4 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274del1 | caC | ca- | 3 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274del1 | cAc | c-c | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | B.1.1.311 | 0.002865 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 8 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1274 | H1274Y | CaC | TaT | 1 | 8 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | B.1.561 | 0.003176 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | B.1.609 | 0.003835 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 8 | 8 | C.36.3 | 0.004538 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | AY.107 | 0.003262 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | AY.51 | 0.006364 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | B.1.1.432 | 0.008861 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | AY.10 | 0.00318 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.177.82 | 0.002864 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | B.1.576 | 0.00544 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.619 | 0.005226 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | C.18 | 0.015544 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | L.3 | 0.021277 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 6 | 6 | W.3 | 0.031579 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.64 | 0.002976 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.80 | 0.005643 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | B.1.1.326 | 0.008803 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | B.1.1.412 | 0.038168 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | B.1.177.67 | 0.038168 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | B.1.177.8 | 0.003762 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | A.19 | 0.037736 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caG | 2 | 4 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 2 | 4 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.1.209 | 0.035714 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.1.521 | 0.02139 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1274 | H1274del1 | Cac | -ac | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1274 | H1274del1 | cAc | c-c | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.170 | 0.017241 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.177.42 | 0.003578 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.214 | 0.014652 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.258.3 | 0.0067 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | B.1.361 | 0.005155 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.398 | 0.011905 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | B.1.466.1 | 0.028777 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | P.6 | 0.012579 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.21 | 0.005693 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.50 | 0.002398 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.1.71 | 0.018182 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.177.18 | 0.00348 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.225 | 0.046154 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.340 | 0.012876 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | C.17 | 0.166667 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | C.23 | 0.017442 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1274 | H1274C | CAc | TGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274S | CAC | TCT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274V | CAc | GTc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274V | CAC | GTT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274S | CAc | TCc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1274 | H1274C | CAc | TGc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.181 | 0.009091 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp3 | 1274 | H1274V | CAC | GTT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1274 | H1274V | CAc | GTc | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 1 | 2 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 2 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.38 | 0.117647 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.13 | 0.004751 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.177.89 | 0.04878 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 2 | 2 | B.1.214.3 | 0.014286 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.313 | 0.013158 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.362.2 | 0.009434 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | B.1.88.1 | 0.009615 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1274 | H1274S | CAc | TCc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AB.1 | 0.008197 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | AF.1 | 0.037037 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1274 | H1274K | CaC | AaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274I | CAc | ATc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1274 | H1274del1 | caC | ca- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1274 | H1274del1 | caC | ca- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.111 | 0.014706 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274I | CAc | ATc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.151 | 0.011111 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1274 | H1274del2 | cAC | c-- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.70 | 0.005917 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1274 | H1274L | cAc | cTc | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1274 | H1274P | cAC | cCT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1274 | H1274R | cAc | cGc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.438.2 | 0.019231 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1274 | H1274Q | caC | caG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1274 | H1274K | CaC | AaA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1274 | H1274del1 | caC | ca- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1274 | H1274N | Cac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1274 | H1274del1 | Cac | -ac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1274 | H1274del2 | CAc | --c | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1274 | H1274S | CAC | TCT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1274 | H1274D | Cac | Gac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1274 | H1274P | cAc | cCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1274 | H1274H | caC | caT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1274 | H1274Y | Cac | Tac | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1274 | H1274del | CAC | --- | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|