CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1270

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31270E1270GE2088GnonsyngAagGa1237123716527-6529
ORF1ab/nsp31270E1270AE2088AnonsyngAagCa3483470.9971266527-6529
ORF1ab/nsp31270E1270AE2088AnonsyngAAgCT34810.002873566527-6529
ORF1ab/nsp31270E1270EE2088EsyngaAgaG27827816527-6529
ORF1ab/nsp31270E1270QE2088QnonsynGaaCaa20120116527-6529
ORF1ab/nsp31270E1270KE2088KnonsynGaaAaa1401390.9928576527-6529
ORF1ab/nsp31270E1270KE2088KnonsynGaAAaG14010.007142866527-6529
ORF1ab/nsp31270E1270DE2088DnonsyngaAgaC127910.7165356527-6529
ORF1ab/nsp31270E1270DE2088DnonsyngaAgaT127360.2834656527-6529
ORF1ab/nsp31270E1270delE2088deldelGAA---10010016527-6529
ORF1ab/nsp31270E1270XE2088XnonsynGaaTaa191916527-6529
ORF1ab/nsp31270E1270VE2088VnonsyngAagTa650.8333336527-6529
ORF1ab/nsp31270E1270VE2088VnonsyngAAgTT610.1666676527-6529
ORF1ab/nsp31270E1270TE2088TnonsynGAaACa430.756527-6529
ORF1ab/nsp31270E1270IE2088InonsynGAAATT420.56527-6529
ORF1ab/nsp31270E1270IE2088InonsynGAaATa420.56527-6529
ORF1ab/nsp31270E1270SE2088SnonsynGAaTCa420.56527-6529
ORF1ab/nsp31270E1270TE2088TnonsynGAAACT410.256527-6529
ORF1ab/nsp31270E1270SE2088SnonsynGAAAGT410.256527-6529
ORF1ab/nsp31270E1270SE2088SnonsynGAATCT410.256527-6529
ORF1ab/nsp31270E1270NE2088NnonsynGaAAaT2216527-6529
ORF1ab/nsp31270E1270del2E2088del2delGAa--a210.56527-6529
ORF1ab/nsp31270E1270del2E2088del2delgAAg--210.56527-6529
ORF1ab/nsp31270E1270YE2088YnonsynGaATaT1116527-6529
ORF1ab/nsp31270E1270LE2088LnonsynGAaTTa1116527-6529
ORF1ab/nsp31270E1270FE2088FnonsynGAATTT1116527-6529
ORF1ab/nsp31270E1270del1E2088del1delgAag-a1116527-6529

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31270E1270GgAagGa12371237All0.000237
ORF1ab/nsp31270E1270GgAagGa795795AY.40.001237
ORF1ab/nsp31270E1270AgAagCa347348All0.000066
ORF1ab/nsp31270E1270AgAAgCT1348All0
ORF1ab/nsp31270E1270EgaAgaG278278All0.000053
ORF1ab/nsp31270E1270AgAagCa217217P.1.140.010373
ORF1ab/nsp31270E1270QGaaCaa201201All0.000038
ORF1ab/nsp31270E1270GgAagGa161161B.1.36.280.925287
ORF1ab/nsp31270E1270QGaaCaa144144B.1.1.70.000129
ORF1ab/nsp31270E1270KGaaAaa139140All0.000027
ORF1ab/nsp31270E1270KGaAAaG1140All0
ORF1ab/nsp31270E1270DgaAgaC91127All0.000017
ORF1ab/nsp31270E1270DgaAgaT36127All0.000007
ORF1ab/nsp31270E1270delGAA---100100All0.000019
ORF1ab/nsp31270E1270EgaAgaG6565B.1.1.70.000058
ORF1ab/nsp31270E1270AgAagCa6363B.1.1.70.000056
ORF1ab/nsp31270E1270GgAagGa6161AY.440.000371
ORF1ab/nsp31270E1270QGaaCaa4646B.1.6370.003361
ORF1ab/nsp31270E1270delGAA---4040B.1.1.70.000036
ORF1ab/nsp31270E1270DgaAgaC3333B.1.1.2140.00183
ORF1ab/nsp31270E1270GgAagGa3232AY.1030.000199
ORF1ab/nsp31270E1270EgaAgaG3131AY.9.20.001139
ORF1ab/nsp31270E1270GgAagGa3131B.1.617.20.000117
ORF1ab/nsp31270E1270KGaaAaa2424B.10.00022
ORF1ab/nsp31270E1270GgAagGa2323B.1.1.70.000021
ORF1ab/nsp31270E1270EgaAgaG2020AY.40.000031
ORF1ab/nsp31270E1270XGaaTaa1919All0.000004
ORF1ab/nsp31270E1270GgAagGa1919AY.1000.000874
ORF1ab/nsp31270E1270EgaAgaG1818AY.440.00011
ORF1ab/nsp31270E1270EgaAgaG1818P.1.120.008712
ORF1ab/nsp31270E1270EgaAgaG1616AY.30.000159
ORF1ab/nsp31270E1270DgaAgaC1116B.10.000101
ORF1ab/nsp31270E1270DgaAgaT516B.10.000046
ORF1ab/nsp31270E1270KGaaAaa1515AY.390.000371
ORF1ab/nsp31270E1270DgaAgaC1015B.1.1.70.000009
ORF1ab/nsp31270E1270DgaAgaT515B.1.1.70.000004
ORF1ab/nsp31270E1270KGaaAaa1515B.1.3060.085714
ORF1ab/nsp31270E1270DgaAgaT1314AY.250.000078
ORF1ab/nsp31270E1270DgaAgaC114AY.250.000006
ORF1ab/nsp31270E1270AgAagCa1414AY.40.000022
ORF1ab/nsp31270E1270AgAagCa1414B.1.1.2280.042683
ORF1ab/nsp31270E1270DgaAgaC1111AY.40.000017
ORF1ab/nsp31270E1270DgaAgaC1111AY.650.005864
ORF1ab/nsp31270E1270EgaAgaG1111B.1.10.0002
ORF1ab/nsp31270E1270AgAagCa1111B.1.1600.000343
ORF1ab/nsp31270E1270EgaAgaG1111B.1.2410.008929
ORF1ab/nsp31270E1270KGaaAaa1010AY.30.000099
ORF1ab/nsp31270E1270GgAagGa99B.1.10.000163
ORF1ab/nsp31270E1270KGaaAaa99B.1.1.500.00611
ORF1ab/nsp31270E1270delGAA---99B.1.3980.026786
ORF1ab/nsp31270E1270EgaAgaG88AY.470.000249
ORF1ab/nsp31270E1270KGaaAaa88B.1.1.70.000007
ORF1ab/nsp31270E1270GgAagGa88B.1.160.280.023392
ORF1ab/nsp31270E1270GgAagGa88P.10.000126
ORF1ab/nsp31270E1270AgAagCa77AY.1030.000043
ORF1ab/nsp31270E1270delGAA---77AY.40.000011
ORF1ab/nsp31270E1270GgAagGa77AY.430.000031
ORF1ab/nsp31270E1270GgAagGa77P.1.170.001132
ORF1ab/nsp31270E1270VgAagTa56All0.000001
ORF1ab/nsp31270E1270VgAAgTT16All0
ORF1ab/nsp31270E1270GgAagGa66AY.200.000233
ORF1ab/nsp31270E1270KGaaAaa66AY.40.000009
ORF1ab/nsp31270E1270KGaaAaa66AY.430.000027
ORF1ab/nsp31270E1270KGaaAaa66AY.440.000037
ORF1ab/nsp31270E1270QGaaCaa66AY.470.000187
ORF1ab/nsp31270E1270GgAagGa66B.10.000055
ORF1ab/nsp31270E1270EgaAgaG66B.1.1.440.014458
ORF1ab/nsp31270E1270delGAA---66B.1.617.20.000023
ORF1ab/nsp31270E1270EgaAgaG55AY.1030.000031
ORF1ab/nsp31270E1270EgaAgaG55AY.1180.000313
ORF1ab/nsp31270E1270EgaAgaG55AY.450.000608
ORF1ab/nsp31270E1270GgAagGa55B.1.1.1410.01006
ORF1ab/nsp31270E1270delGAA---55B.1.1770.000066
ORF1ab/nsp31270E1270KGaaAaa55B.1.20.000044
ORF1ab/nsp31270E1270EgaAgaG55B.1.5610.001985
ORF1ab/nsp31270E1270GgAagGa55C.370.00058
ORF1ab/nsp31270E1270DgaAgaT55P.10.000079
ORF1ab/nsp31270E1270TGAaACa34All0.000001
ORF1ab/nsp31270E1270IGAaATa24All0
ORF1ab/nsp31270E1270SGAaTCa24All0
ORF1ab/nsp31270E1270IGAAATT24All0
ORF1ab/nsp31270E1270SGAATCT14All0
ORF1ab/nsp31270E1270SGAAAGT14All0
ORF1ab/nsp31270E1270TGAAACT14All0
ORF1ab/nsp31270E1270GgAagGa44AY.390.000099
ORF1ab/nsp31270E1270EgaAgaG44AY.390.000099
ORF1ab/nsp31270E1270EgaAgaG44B.10.000037
ORF1ab/nsp31270E1270XGaaTaa44B.10.000037
ORF1ab/nsp31270E1270AgAagCa44B.1.1.3170.001647
ORF1ab/nsp31270E1270GgAagGa44B.1.1650.047619
ORF1ab/nsp31270E1270EgaAgaG33AY.250.000018
ORF1ab/nsp31270E1270GgAagGa33AY.250.000018
ORF1ab/nsp31270E1270KGaaAaa33AY.250.000018
ORF1ab/nsp31270E1270delGAA---33AY.290.000047
ORF1ab/nsp31270E1270AgAagCa33AY.390.000074
ORF1ab/nsp31270E1270delGAA---33AY.4.50.000322
ORF1ab/nsp31270E1270EgaAgaG33AY.430.000013
ORF1ab/nsp31270E1270DgaAgaC33AY.430.000013
ORF1ab/nsp31270E1270EgaAgaG33AY.90.000203
ORF1ab/nsp31270E1270AgAagCa33AY.98.10.000145
ORF1ab/nsp31270E1270delGAA---33B.10.000027
ORF1ab/nsp31270E1270VgAagTa33B.10.000027
ORF1ab/nsp31270E1270KGaaAaa33B.1.10.000054
ORF1ab/nsp31270E1270delGAA---33B.1.10.000054
ORF1ab/nsp31270E1270DgaAgaC23B.1.10.000036
ORF1ab/nsp31270E1270DgaAgaT13B.1.10.000018
ORF1ab/nsp31270E1270GgAagGa33B.1.1.2940.003797
ORF1ab/nsp31270E1270EgaAgaG33B.1.1.4270.428571
ORF1ab/nsp31270E1270GgAagGa33B.1.20.000026
ORF1ab/nsp31270E1270EgaAgaG33B.1.20.000026
ORF1ab/nsp31270E1270EgaAgaG33B.1.3510.000089
ORF1ab/nsp31270E1270GgAagGa33B.1.360.000438
ORF1ab/nsp31270E1270KGaaAaa33B.1.3980.008929
ORF1ab/nsp31270E1270KGaaAaa33C.370.000348
ORF1ab/nsp31270E1270NGaAAaT22All0
ORF1ab/nsp31270E1270del2gAAg--12All0
ORF1ab/nsp31270E1270del2GAa--a12All0
ORF1ab/nsp31270E1270DgaAgaC22AY.1000.000092
ORF1ab/nsp31270E1270KGaaAaa22AY.1030.000012
ORF1ab/nsp31270E1270GgAagGa22AY.1200.000074
ORF1ab/nsp31270E1270delGAA---22AY.250.000012
ORF1ab/nsp31270E1270GgAagGa22AY.260.000057
ORF1ab/nsp31270E1270GgAagGa22AY.30.00002
ORF1ab/nsp31270E1270XGaaTaa22AY.40.000003
ORF1ab/nsp31270E1270delGAA---22AY.430.000009
ORF1ab/nsp31270E1270delGAA---22AY.460.000208
ORF1ab/nsp31270E1270AgAagCa22B.10.000018
ORF1ab/nsp31270E1270XGaaTaa22B.1.10.000036
ORF1ab/nsp31270E1270VgAagTa12B.1.10.000018
ORF1ab/nsp31270E1270IGAaATa12B.1.10.000018
ORF1ab/nsp31270E1270IGAAATT12B.1.10.000018
ORF1ab/nsp31270E1270SGAaTCa12B.1.10.000018
ORF1ab/nsp31270E1270TGAAACT12B.1.10.000018
ORF1ab/nsp31270E1270AgAAgCT12B.1.10.000018
ORF1ab/nsp31270E1270AgAagCa12B.1.10.000018
ORF1ab/nsp31270E1270VgAAgTT12B.1.10.000018
ORF1ab/nsp31270E1270SGAATCT12B.1.10.000018
ORF1ab/nsp31270E1270TGAaACa12B.1.10.000018
ORF1ab/nsp31270E1270GgAagGa22B.1.1.5190.000079
ORF1ab/nsp31270E1270del2gAAg--12B.1.1.70.000001
ORF1ab/nsp31270E1270del2GAa--a12B.1.1.70.000001
ORF1ab/nsp31270E1270GgAagGa22B.1.1770.000026
ORF1ab/nsp31270E1270DgaAgaT22B.1.177.750.002081
ORF1ab/nsp31270E1270EgaAgaG22B.1.2580.000133
ORF1ab/nsp31270E1270EgaAgaG22B.1.258.170.000208
ORF1ab/nsp31270E1270GgAagGa22B.1.3510.000059
ORF1ab/nsp31270E1270KGaaAaa22B.1.5250.000226
ORF1ab/nsp31270E1270AgAagCa22B.1.617.20.000008
ORF1ab/nsp31270E1270EgaAgaG22B.1.617.20.000008
ORF1ab/nsp31270E1270DgaAgaC12B.1.617.20.000004
ORF1ab/nsp31270E1270DgaAgaT12B.1.617.20.000004
ORF1ab/nsp31270E1270EgaAgaG22P.10.000032
ORF1ab/nsp31270E1270KGaaAaa11A0.000387
ORF1ab/nsp31270E1270QGaaCaa11A.10.000282
ORF1ab/nsp31270E1270GgAagGa11A.20.000662
ORF1ab/nsp31270E1270DgaAgaT11A.2.40.003367
ORF1ab/nsp31270E1270delGAA---11A.280.002646
ORF1ab/nsp31270E1270DgaAgaC11AD.20.000219
ORF1ab/nsp31270E1270FGAATTT11All0
ORF1ab/nsp31270E1270LGAaTTa11All0
ORF1ab/nsp31270E1270YGaATaT11All0
ORF1ab/nsp31270E1270del1gAag-a11All0
ORF1ab/nsp31270E1270DgaAgaC11AY.1020.000027
ORF1ab/nsp31270E1270GgAagGa11AY.1020.000027
ORF1ab/nsp31270E1270XGaaTaa11AY.1030.000006
ORF1ab/nsp31270E1270EgaAgaG11AY.1100.000113
ORF1ab/nsp31270E1270XGaaTaa11AY.1130.000142
ORF1ab/nsp31270E1270EgaAgaG11AY.1140.000231
ORF1ab/nsp31270E1270GgAagGa11AY.1170.000085
ORF1ab/nsp31270E1270KGaaAaa11AY.1190.000035
ORF1ab/nsp31270E1270DgaAgaC11AY.1190.000035
ORF1ab/nsp31270E1270AgAagCa11AY.120.000316
ORF1ab/nsp31270E1270delGAA---11AY.1200.000037
ORF1ab/nsp31270E1270EgaAgaG11AY.1200.000037
ORF1ab/nsp31270E1270GgAagGa11AY.160.00038
ORF1ab/nsp31270E1270GgAagGa11AY.20.000356
ORF1ab/nsp31270E1270EgaAgaG11AY.230.00007
ORF1ab/nsp31270E1270GgAagGa11AY.270.000065
ORF1ab/nsp31270E1270AgAagCa11AY.340.000097
ORF1ab/nsp31270E1270delGAA---11AY.350.000233
ORF1ab/nsp31270E1270QGaaCaa11AY.390.000025
ORF1ab/nsp31270E1270DgaAgaC11AY.390.000025
ORF1ab/nsp31270E1270EgaAgaG11AY.39.10.00004
ORF1ab/nsp31270E1270TGAaACa11AY.440.000006
ORF1ab/nsp31270E1270AgAagCa11AY.440.000006
ORF1ab/nsp31270E1270KGaaAaa11AY.46.60.000072
ORF1ab/nsp31270E1270GgAagGa11AY.46.60.000072
ORF1ab/nsp31270E1270GgAagGa11AY.470.000031
ORF1ab/nsp31270E1270DgaAgaT11AY.550.000917
ORF1ab/nsp31270E1270KGaaAaa11AY.60.000041
ORF1ab/nsp31270E1270delGAA---11AY.660.00107
ORF1ab/nsp31270E1270delGAA---11AY.720.001361
ORF1ab/nsp31270E1270delGAA---11AY.75.10.00018
ORF1ab/nsp31270E1270delGAA---11AY.90.000068
ORF1ab/nsp31270E1270KGaaAaa11AY.910.00073
ORF1ab/nsp31270E1270EgaAgaG11AY.99.20.000092
ORF1ab/nsp31270E1270SGAaTCa11B.10.000009
ORF1ab/nsp31270E1270TGAaACa11B.10.000009
ORF1ab/nsp31270E1270NGaAAaT11B.10.000009
ORF1ab/nsp31270E1270IGAaATa11B.10.000009
ORF1ab/nsp31270E1270YGaATaT11B.1.10.000018
ORF1ab/nsp31270E1270LGAaTTa11B.1.10.000018
ORF1ab/nsp31270E1270NGaAAaT11B.1.10.000018
ORF1ab/nsp31270E1270FGAATTT11B.1.10.000018
ORF1ab/nsp31270E1270GgAagGa11B.1.1.1210.002427
ORF1ab/nsp31270E1270EgaAgaG11B.1.1.1610.003534
ORF1ab/nsp31270E1270EgaAgaG11B.1.1.280.000311
ORF1ab/nsp31270E1270delGAA---11B.1.1.3480.000796
ORF1ab/nsp31270E1270KGaaAaa11B.1.1.370.000193
ORF1ab/nsp31270E1270delGAA---11B.1.1.4090.002833
ORF1ab/nsp31270E1270KGaaAaa11B.1.1.4090.002833
ORF1ab/nsp31270E1270EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp31270E1270del1gAag-a11B.1.1.70.000001
ORF1ab/nsp31270E1270KGaaAaa11B.1.1390.000733
ORF1ab/nsp31270E1270GgAagGa11B.1.1600.000031
ORF1ab/nsp31270E1270XGaaTaa11B.1.1600.000031
ORF1ab/nsp31270E1270delGAA---11B.1.1600.000031
ORF1ab/nsp31270E1270XGaaTaa11B.1.1770.000013
ORF1ab/nsp31270E1270AgAagCa11B.1.1770.000013
ORF1ab/nsp31270E1270EgaAgaG11B.1.177.120.000152
ORF1ab/nsp31270E1270delGAA---11B.1.177.510.004566
ORF1ab/nsp31270E1270GgAagGa11B.1.177.540.000606
ORF1ab/nsp31270E1270KGaaAaa11B.1.177.810.000189
ORF1ab/nsp31270E1270delGAA---11B.1.177.830.001481
ORF1ab/nsp31270E1270QGaaCaa11B.1.20.000009
ORF1ab/nsp31270E1270DgaAgaT11B.1.20.000009
ORF1ab/nsp31270E1270XGaaTaa11B.1.20.000009
ORF1ab/nsp31270E1270KGaaAaa11B.1.2210.000071
ORF1ab/nsp31270E1270XGaaTaa11B.1.2210.000071
ORF1ab/nsp31270E1270KGaaAaa11B.1.2430.00007
ORF1ab/nsp31270E1270EgaAgaG11B.1.3430.020833
ORF1ab/nsp31270E1270EgaAgaG11B.1.3490.000715
ORF1ab/nsp31270E1270EgaAgaG11B.1.360.000146
ORF1ab/nsp31270E1270KGaaAaa11B.1.36.290.000517
ORF1ab/nsp31270E1270EgaAgaG11B.1.3990.001934
ORF1ab/nsp31270E1270delGAA---11B.1.4090.000781
ORF1ab/nsp31270E1270KGaaAaa11B.1.4270.00005
ORF1ab/nsp31270E1270GgAagGa11B.1.4270.00005
ORF1ab/nsp31270E1270DgaAgaT11B.1.4290.000024
ORF1ab/nsp31270E1270XGaaTaa11B.1.4290.000024
ORF1ab/nsp31270E1270DgaAgaC11B.1.438.10.000107
ORF1ab/nsp31270E1270XGaaTaa11B.1.4990.00105
ORF1ab/nsp31270E1270AgAagCa11B.1.5250.000113
ORF1ab/nsp31270E1270EgaAgaG11B.1.5260.000024
ORF1ab/nsp31270E1270GgAagGa11B.1.5330.009615
ORF1ab/nsp31270E1270KGaaAaa11B.1.5750.000303
ORF1ab/nsp31270E1270GgAagGa11B.1.575.10.002439
ORF1ab/nsp31270E1270KGaaAaa11B.1.5770.000687
ORF1ab/nsp31270E1270KGaaAaa11B.1.5950.000261
ORF1ab/nsp31270E1270XGaaTaa11B.1.5960.000087
ORF1ab/nsp31270E1270GgAagGa11B.1.6090.000479
ORF1ab/nsp31270E1270KGaaAaa11B.1.617.20.000004
ORF1ab/nsp31270E1270XGaaTaa11B.1.617.20.000004
ORF1ab/nsp31270E1270IGAAATT11B.1.617.20.000004
ORF1ab/nsp31270E1270delGAA---11B.1.6300.005236
ORF1ab/nsp31270E1270GgAagGa11B.1.6320.006711
ORF1ab/nsp31270E1270GgAagGa11B.230.002924
ORF1ab/nsp31270E1270GgAagGa11B.40.002208
ORF1ab/nsp31270E1270QGaaCaa11C.10.002392
ORF1ab/nsp31270E1270GgAagGa11C.120.007194
ORF1ab/nsp31270E1270KGaAAaG11C.350.000774
ORF1ab/nsp31270E1270delGAA---11C.360.000911
ORF1ab/nsp31270E1270QGaaCaa11C.360.000911
ORF1ab/nsp31270E1270VgAagTa11D.20.000075
ORF1ab/nsp31270E1270SGAAAGT11P.10.000016
ORF1ab/nsp31270E1270KGaaAaa11P.10.000016
ORF1ab/nsp31270E1270EgaAgaG11P.1.10.000318
ORF1ab/nsp31270E1270KGaaAaa11P.1.100.000269
ORF1ab/nsp31270E1270GgAagGa11P.1.140.000048
ORF1ab/nsp31270E1270EgaAgaG11P.1.150.000232
ORF1ab/nsp31270E1270EgaAgaG11P.20.000187
ORF1ab/nsp31270E1270AgAagCa11P.20.000187
ORF1ab/nsp31270E1270EgaAgaG11P.30.001595
ORF1ab/nsp31270E1270GgAagGa11Q.30.000145
ORF1ab/nsp31270E1270GgAagGa11Q.80.000165
ORF1ab/nsp31270E1270XGaaTaa11Q.80.000165
ORF1ab/nsp31270E1270DgaAgaC11Q.80.000165
ORF1ab/nsp31270E1270EgaAgaG11R.10.00009