CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 127 | T127I | T945I | nonsyn | aCt | aTt | 2219 | 2218 | 0.999549 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127I | T945I | nonsyn | aCT | aTC | 2219 | 1 | 0.000450653 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127N | T945N | nonsyn | aCt | aAt | 1064 | 1063 | 0.99906 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127N | T945N | nonsyn | aCT | aAC | 1064 | 1 | 0.00093985 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127T | T945T | syn | acT | acC | 856 | 463 | 0.540888 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127T | T945T | syn | acT | acG | 856 | 379 | 0.442757 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127T | T945T | syn | acT | acA | 856 | 14 | 0.0163551 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127del | T945del | del | ACT | --- | 160 | 160 | 1 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127A | T945A | nonsyn | Act | Gct | 59 | 58 | 0.983051 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127A | T945A | nonsyn | AcT | GcG | 59 | 1 | 0.0169492 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127K | T945K | nonsyn | aCT | aAA | 12 | 7 | 0.583333 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127K | T945K | nonsyn | aCT | aAG | 12 | 5 | 0.416667 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127P | T945P | nonsyn | Act | Cct | 10 | 10 | 1 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127S | T945S | nonsyn | Act | Tct | 7 | 5 | 0.714286 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127S | T945S | nonsyn | aCt | aGt | 7 | 2 | 0.285714 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127del1 | T945del1 | del | aCt | a-t | 3 | 2 | 0.666667 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127R | T945R | nonsyn | ACt | CGt | 3 | 2 | 0.666667 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127del1 | T945del1 | del | acT | ac- | 3 | 1 | 0.333333 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127R | T945R | nonsyn | aCT | aGA | 3 | 1 | 0.333333 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127D | T945D | nonsyn | ACt | GAt | 1 | 1 | 1 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127C | T945C | nonsyn | ACt | TGt | 1 | 1 | 1 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127V | T945V | nonsyn | ACT | GTG | 1 | 1 | 1 | 3098-3100 |
ORF1ab/nsp3 | 127 | T127Y | T945Y | nonsyn | ACt | TAt | 1 | 1 | 1 | 3098-3100 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2218 | 2219 | All | 0.000424 |
ORF1ab/nsp3 | 127 | T127I | aCT | aTC | 1 | 2219 | All | 0 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1133 | 1133 | B.1.367 | 0.897781 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1063 | 1064 | All | 0.000203 |
ORF1ab/nsp3 | 127 | T127N | aCT | aAC | 1 | 1064 | All | 0 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 463 | 856 | All | 0.000089 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 379 | 856 | All | 0.000072 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 14 | 856 | All | 0.000003 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 549 | 549 | B.1.1.7 | 0.000491 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 324 | 508 | B.1.1.7 | 0.00029 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 181 | 508 | B.1.1.7 | 0.000162 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 3 | 508 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 404 | 404 | AY.4 | 0.000629 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 344 | 344 | AY.33 | 0.022972 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 162 | 162 | B.1.1.372 | 0.11157 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 160 | 160 | All | 0.000031 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 77 | 77 | B.1.617.2 | 0.00029 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 75 | 75 | AY.39 | 0.001853 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 67 | 67 | B.1 | 0.000614 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 58 | 59 | All | 0.000011 |
ORF1ab/nsp3 | 127 | T127A | AcT | GcG | 1 | 59 | All | 0 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 53 | 53 | AY.3 | 0.000527 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 46 | 46 | AY.26 | 0.001302 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 35 | 35 | AY.103 | 0.000217 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 29 | 30 | AY.26 | 0.000821 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 30 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 30 | 30 | B.1.177.12 | 0.004551 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 28 | 28 | B.1.621.1 | 0.014163 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 17 | 17 | AE.8 | 0.008313 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 10 | 16 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 6 | 16 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 15 | 15 | A.22 | 1 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAA | 7 | 12 | All | 0.000001 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAG | 5 | 12 | All | 0.000001 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 11 | 11 | B.1.619 | 0.009582 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 10 | 10 | AY.34 | 0.00097 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 4 | 9 | B.1 | 0.000037 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 3 | 9 | B.1 | 0.000027 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 2 | 9 | B.1 | 0.000018 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 127 | T127S | Act | Tct | 5 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 127 | T127S | aCt | aGt | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 7 | 7 | AY.2 | 0.002493 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 6 | 7 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 7 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 5 | 6 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 6 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 4 | 6 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 2 | 6 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp3 | 127 | T127N | aCT | aAC | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 5 | 5 | AY.7 | 0.00098 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 127 | T127K | aCT | aAG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 127 | T127K | aCT | aAA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 127 | T127S | Act | Tct | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 127 | T127S | aCt | aGt | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAA | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 4 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 127 | T127I | aCT | aTC | 1 | 4 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 4 | 4 | B.1.619.1 | 0.002566 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 127 | T127R | ACt | CGt | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 127 | T127R | aCT | aGA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 127 | T127del1 | aCt | a-t | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 127 | T127R | ACt | CGt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 127 | T127del1 | acT | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 127 | T127R | aCT | aGA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 3 | 3 | B.1.1.15 | 0.040541 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 127 | T127A | AcT | GcG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 127 | T127T | acT | acA | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 127 | T127S | aCt | aGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | A.18 | 0.05 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 127 | T127V | ACT | GTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 127 | T127D | ACt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 127 | T127C | ACt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 127 | T127Y | ACt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 127 | T127C | ACt | TGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 127 | T127D | ACt | GAt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 127 | T127V | ACT | GTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 127 | T127del1 | aCt | a-t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 127 | T127Y | ACt | TAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAG | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 127 | T127K | aCT | aAG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 127 | T127S | Act | Tct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 127 | T127del1 | acT | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 127 | T127del1 | aCt | a-t | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 127 | T127S | Act | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 127 | T127P | Act | Cct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 127 | T127A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 127 | T127N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 127 | T127del | ACT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 127 | T127I | aCt | aTt | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 127 | T127T | acT | acC | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 127 | T127T | acT | acG | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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