CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 127

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3127T127IT945InonsynaCtaTt221922180.9995493098-3100
ORF1ab/nsp3127T127IT945InonsynaCTaTC221910.0004506533098-3100
ORF1ab/nsp3127T127NT945NnonsynaCtaAt106410630.999063098-3100
ORF1ab/nsp3127T127NT945NnonsynaCTaAC106410.000939853098-3100
ORF1ab/nsp3127T127TT945TsynacTacC8564630.5408883098-3100
ORF1ab/nsp3127T127TT945TsynacTacG8563790.4427573098-3100
ORF1ab/nsp3127T127TT945TsynacTacA856140.01635513098-3100
ORF1ab/nsp3127T127delT945deldelACT---16016013098-3100
ORF1ab/nsp3127T127AT945AnonsynActGct59580.9830513098-3100
ORF1ab/nsp3127T127AT945AnonsynAcTGcG5910.01694923098-3100
ORF1ab/nsp3127T127KT945KnonsynaCTaAA1270.5833333098-3100
ORF1ab/nsp3127T127KT945KnonsynaCTaAG1250.4166673098-3100
ORF1ab/nsp3127T127PT945PnonsynActCct101013098-3100
ORF1ab/nsp3127T127ST945SnonsynActTct750.7142863098-3100
ORF1ab/nsp3127T127ST945SnonsynaCtaGt720.2857143098-3100
ORF1ab/nsp3127T127del1T945del1delaCta-t320.6666673098-3100
ORF1ab/nsp3127T127RT945RnonsynACtCGt320.6666673098-3100
ORF1ab/nsp3127T127del1T945del1delacTac-310.3333333098-3100
ORF1ab/nsp3127T127RT945RnonsynaCTaGA310.3333333098-3100
ORF1ab/nsp3127T127DT945DnonsynACtGAt1113098-3100
ORF1ab/nsp3127T127CT945CnonsynACtTGt1113098-3100
ORF1ab/nsp3127T127VT945VnonsynACTGTG1113098-3100
ORF1ab/nsp3127T127YT945YnonsynACtTAt1113098-3100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3127T127IaCtaTt22182219All0.000424
ORF1ab/nsp3127T127IaCTaTC12219All0
ORF1ab/nsp3127T127IaCtaTt11331133B.1.3670.897781
ORF1ab/nsp3127T127NaCtaAt10631064All0.000203
ORF1ab/nsp3127T127NaCTaAC11064All0
ORF1ab/nsp3127T127TacTacC463856All0.000089
ORF1ab/nsp3127T127TacTacG379856All0.000072
ORF1ab/nsp3127T127TacTacA14856All0.000003
ORF1ab/nsp3127T127NaCtaAt549549B.1.1.70.000491
ORF1ab/nsp3127T127TacTacC324508B.1.1.70.00029
ORF1ab/nsp3127T127TacTacG181508B.1.1.70.000162
ORF1ab/nsp3127T127TacTacA3508B.1.1.70.000003
ORF1ab/nsp3127T127IaCtaTt404404AY.40.000629
ORF1ab/nsp3127T127NaCtaAt344344AY.330.022972
ORF1ab/nsp3127T127TacTacG162162B.1.1.3720.11157
ORF1ab/nsp3127T127delACT---160160All0.000031
ORF1ab/nsp3127T127IaCtaTt7777B.1.617.20.00029
ORF1ab/nsp3127T127IaCtaTt7575AY.390.001853
ORF1ab/nsp3127T127IaCtaTt6767B.10.000614
ORF1ab/nsp3127T127AActGct5859All0.000011
ORF1ab/nsp3127T127AAcTGcG159All0
ORF1ab/nsp3127T127IaCtaTt5353AY.30.000527
ORF1ab/nsp3127T127IaCtaTt4646AY.260.001302
ORF1ab/nsp3127T127delACT---4242B.1.617.20.000158
ORF1ab/nsp3127T127IaCtaTt4040B.1.10.000726
ORF1ab/nsp3127T127IaCtaTt3737B.1.1.70.000033
ORF1ab/nsp3127T127IaCtaTt3535AY.1030.000217
ORF1ab/nsp3127T127TacTacC2930AY.260.000821
ORF1ab/nsp3127T127TacTacG130AY.260.000028
ORF1ab/nsp3127T127TacTacC3030B.1.177.120.004551
ORF1ab/nsp3127T127IaCtaTt2828AY.250.000168
ORF1ab/nsp3127T127IaCtaTt2828B.1.621.10.014163
ORF1ab/nsp3127T127IaCtaTt2727B.1.1600.000842
ORF1ab/nsp3127T127NaCtaAt2525AY.40.000039
ORF1ab/nsp3127T127delACT---1818AY.40.000028
ORF1ab/nsp3127T127IaCtaTt1717AE.80.008313
ORF1ab/nsp3127T127NaCtaAt1717AY.610.001781
ORF1ab/nsp3127T127TacTacG1016B.1.617.20.000038
ORF1ab/nsp3127T127TacTacC616B.1.617.20.000023
ORF1ab/nsp3127T127NaCtaAt1515A.221
ORF1ab/nsp3127T127IaCtaTt1414AY.440.000085
ORF1ab/nsp3127T127IaCtaTt1414B0.001789
ORF1ab/nsp3127T127AActGct1414B.1.20.000123
ORF1ab/nsp3127T127delACT---1313AY.1000.000598
ORF1ab/nsp3127T127KaCTaAA712All0.000001
ORF1ab/nsp3127T127KaCTaAG512All0.000001
ORF1ab/nsp3127T127AActGct1111B.1.1.70.00001
ORF1ab/nsp3127T127IaCtaTt1111B.1.20.000097
ORF1ab/nsp3127T127delACT---1111B.1.3110.00302
ORF1ab/nsp3127T127TacTacC1111B.1.6190.009582
ORF1ab/nsp3127T127PActCct1010All0.000002
ORF1ab/nsp3127T127IaCtaTt1010AY.1020.000265
ORF1ab/nsp3127T127NaCtaAt1010AY.340.00097
ORF1ab/nsp3127T127NaCtaAt1010B.1.617.20.000038
ORF1ab/nsp3127T127TacTacC49B.10.000037
ORF1ab/nsp3127T127TacTacA39B.10.000027
ORF1ab/nsp3127T127TacTacG29B.10.000018
ORF1ab/nsp3127T127TacTacC88AY.9.20.000294
ORF1ab/nsp3127T127SActTct57All0.000001
ORF1ab/nsp3127T127SaCtaGt27All0
ORF1ab/nsp3127T127NaCtaAt77AY.20.002493
ORF1ab/nsp3127T127TacTacG67AY.250.000036
ORF1ab/nsp3127T127TacTacC17AY.250.000006
ORF1ab/nsp3127T127delACT---66AY.1200.000223
ORF1ab/nsp3127T127NaCtaAt66AY.200.000233
ORF1ab/nsp3127T127TacTacC56AY.30.00005
ORF1ab/nsp3127T127TacTacG16AY.30.00001
ORF1ab/nsp3127T127TacTacC46AY.40.000006
ORF1ab/nsp3127T127TacTacG26AY.40.000003
ORF1ab/nsp3127T127delACT---66AY.4.40.002455
ORF1ab/nsp3127T127NaCtaAt56B.10.000046
ORF1ab/nsp3127T127NaCTaAC16B.10.000009
ORF1ab/nsp3127T127delACT---66B.1.1.70.000005
ORF1ab/nsp3127T127IaCtaTt66B.1.5260.000141
ORF1ab/nsp3127T127AActGct66B.1.617.20.000023
ORF1ab/nsp3127T127TacTacA350.166667
ORF1ab/nsp3127T127TacTacG250.111111
ORF1ab/nsp3127T127NaCtaAt55AY.1030.000031
ORF1ab/nsp3127T127IaCtaTt55AY.610.000524
ORF1ab/nsp3127T127TacTacC55AY.70.00098
ORF1ab/nsp3127T127delACT---55B.10.000046
ORF1ab/nsp3127T127NaCtaAt55B.1.10.000091
ORF1ab/nsp3127T127TacTacC55B.1.20.000044
ORF1ab/nsp3127T127delACT---440.222222
ORF1ab/nsp3127T127KaCTaAG240.111111
ORF1ab/nsp3127T127KaCTaAA240.111111
ORF1ab/nsp3127T127AActGct44AY.1140.000924
ORF1ab/nsp3127T127SActTct34AY.40.000005
ORF1ab/nsp3127T127SaCtaGt14AY.40.000002
ORF1ab/nsp3127T127TacTacA44B.1.2210.000284
ORF1ab/nsp3127T127NaCtaAt44B.1.2210.000284
ORF1ab/nsp3127T127KaCTaAA44B.1.2210.000284
ORF1ab/nsp3127T127IaCtaTt44B.1.2430.000278
ORF1ab/nsp3127T127IaCtaTt34B.1.3510.000089
ORF1ab/nsp3127T127IaCTaTC14B.1.3510.00003
ORF1ab/nsp3127T127delACT---44B.1.5260.000094
ORF1ab/nsp3127T127IaCtaTt44B.1.619.10.002566
ORF1ab/nsp3127T127NaCtaAt44B.1.621.10.002023
ORF1ab/nsp3127T127IaCtaTt44P.10.000063
ORF1ab/nsp3127T127NaCtaAt330.166667
ORF1ab/nsp3127T127RACtCGt230.111111
ORF1ab/nsp3127T127RaCTaGA130.055556
ORF1ab/nsp3127T127del1aCta-t23All0
ORF1ab/nsp3127T127RACtCGt23All0
ORF1ab/nsp3127T127del1acTac-13All0
ORF1ab/nsp3127T127RaCTaGA13All0
ORF1ab/nsp3127T127IaCtaTt33AY.1190.000106
ORF1ab/nsp3127T127delACT---33AY.230.000209
ORF1ab/nsp3127T127AActGct33AY.250.000018
ORF1ab/nsp3127T127TacTacC33AY.290.000047
ORF1ab/nsp3127T127AActGct33AY.30.00003
ORF1ab/nsp3127T127NaCtaAt33AY.350.000699
ORF1ab/nsp3127T127IaCtaTt33AY.430.000013
ORF1ab/nsp3127T127NaCtaAt33AY.440.000018
ORF1ab/nsp3127T127AActGct33AY.440.000018
ORF1ab/nsp3127T127NaCtaAt33AY.450.000365
ORF1ab/nsp3127T127IaCtaTt33AY.540.000286
ORF1ab/nsp3127T127IaCtaTt33AY.9.20.00011
ORF1ab/nsp3127T127TacTacG23B.1.10.000036
ORF1ab/nsp3127T127TacTacC13B.1.10.000018
ORF1ab/nsp3127T127PActCct33B.1.1.150.040541
ORF1ab/nsp3127T127IaCtaTt33B.1.1.1890.004539
ORF1ab/nsp3127T127NaCtaAt33B.1.1.2940.003797
ORF1ab/nsp3127T127delACT---33B.1.1.330.001263
ORF1ab/nsp3127T127IaCtaTt33B.1.1770.00004
ORF1ab/nsp3127T127delACT---33B.1.20.000026
ORF1ab/nsp3127T127IaCtaTt33B.1.2580.0002
ORF1ab/nsp3127T127delACT---33B.1.5750.00091
ORF1ab/nsp3127T127IaCtaTt33B.1.6210.000266
ORF1ab/nsp3127T127IaCtaTt33D.20.000225
ORF1ab/nsp3127T127IaCtaTt22AY.1140.000462
ORF1ab/nsp3127T127IaCtaTt22AY.1210.000271
ORF1ab/nsp3127T127IaCtaTt22AY.340.000194
ORF1ab/nsp3127T127TacTacC22AY.340.000194
ORF1ab/nsp3127T127delACT---22AY.34.10.00102
ORF1ab/nsp3127T127IaCtaTt22AY.370.000632
ORF1ab/nsp3127T127AActGct22AY.390.000049
ORF1ab/nsp3127T127delACT---22AY.430.000009
ORF1ab/nsp3127T127NaCtaAt22AY.430.000009
ORF1ab/nsp3127T127TacTacC12AY.430.000004
ORF1ab/nsp3127T127AAcTGcG12AY.430.000004
ORF1ab/nsp3127T127TacTacG12AY.430.000004
ORF1ab/nsp3127T127AActGct12AY.430.000004
ORF1ab/nsp3127T127TacTacC12AY.440.000006
ORF1ab/nsp3127T127TacTacG12AY.440.000006
ORF1ab/nsp3127T127NaCtaAt22AY.550.001835
ORF1ab/nsp3127T127NaCtaAt22AY.75.10.000361
ORF1ab/nsp3127T127delACT---22AY.90.000135
ORF1ab/nsp3127T127NaCtaAt22AY.98.10.000097
ORF1ab/nsp3127T127KaCTaAG12B.10.000009
ORF1ab/nsp3127T127KaCTaAA12B.10.000009
ORF1ab/nsp3127T127IaCtaTt22B.1.1.10.000653
ORF1ab/nsp3127T127AActGct22B.1.1.3180.000604
ORF1ab/nsp3127T127delACT---22B.1.1.3480.001592
ORF1ab/nsp3127T127AActGct22B.1.1.5190.000079
ORF1ab/nsp3127T127NaCtaAt22B.1.1600.000062
ORF1ab/nsp3127T127TacTacA12B.1.1600.000031
ORF1ab/nsp3127T127TacTacG12B.1.1600.000031
ORF1ab/nsp3127T127NaCtaAt22B.1.1770.000026
ORF1ab/nsp3127T127NaCtaAt22B.1.20.000018
ORF1ab/nsp3127T127NaCtaAt22B.1.3510.000059
ORF1ab/nsp3127T127delACT---22B.1.5170.000854
ORF1ab/nsp3127T127IaCtaTt22B.1.5960.000174
ORF1ab/nsp3127T127NaCtaAt22B.1.617.10.000258
ORF1ab/nsp3127T127PActCct22B.1.617.20.000008
ORF1ab/nsp3127T127NaCtaAt22B.1.6210.000177
ORF1ab/nsp3127T127IaCtaTt22B.1.6370.000146
ORF1ab/nsp3127T127delACT---22N.60.014184
ORF1ab/nsp3127T127TacTacC22P.10.000032
ORF1ab/nsp3127T127delACT---22P.10.000032
ORF1ab/nsp3127T127TacTacG22P.1.140.000096
ORF1ab/nsp3127T127TacTacC22P.1.150.000465
ORF1ab/nsp3127T127SaCtaGt110.055556
ORF1ab/nsp3127T127NaCtaAt11A0.000387
ORF1ab/nsp3127T127IaCtaTt11A.180.05
ORF1ab/nsp3127T127IaCtaTt11A.2.50.000499
ORF1ab/nsp3127T127TacTacC11A.23.10.000704
ORF1ab/nsp3127T127VACTGTG11All0
ORF1ab/nsp3127T127DACtGAt11All0
ORF1ab/nsp3127T127CACtTGt11All0
ORF1ab/nsp3127T127YACtTAt11All0
ORF1ab/nsp3127T127IaCtaTt11AY.10.000396
ORF1ab/nsp3127T127IaCtaTt11AY.1010.00049
ORF1ab/nsp3127T127TacTacG11AY.1020.000027
ORF1ab/nsp3127T127AActGct11AY.1030.000006
ORF1ab/nsp3127T127delACT---11AY.1030.000006
ORF1ab/nsp3127T127PActCct11AY.1030.000006
ORF1ab/nsp3127T127IaCtaTt11AY.1050.000643
ORF1ab/nsp3127T127IaCtaTt11AY.1130.000142
ORF1ab/nsp3127T127TacTacC11AY.1130.000142
ORF1ab/nsp3127T127IaCtaTt11AY.1160.000287
ORF1ab/nsp3127T127TacTacC11AY.1160.000287
ORF1ab/nsp3127T127AActGct11AY.1170.000085
ORF1ab/nsp3127T127IaCtaTt11AY.120.000316
ORF1ab/nsp3127T127CACtTGt11AY.1200.000037
ORF1ab/nsp3127T127IaCtaTt11AY.1200.000037
ORF1ab/nsp3127T127IaCtaTt11AY.160.00038
ORF1ab/nsp3127T127delACT---11AY.250.000006
ORF1ab/nsp3127T127TacTacC11AY.270.000065
ORF1ab/nsp3127T127IaCtaTt11AY.290.000016
ORF1ab/nsp3127T127NaCtaAt11AY.290.000016
ORF1ab/nsp3127T127delACT---11AY.30.00001
ORF1ab/nsp3127T127delACT---11AY.300.000396
ORF1ab/nsp3127T127delACT---11AY.330.000067
ORF1ab/nsp3127T127IaCtaTt11AY.34.10.00051
ORF1ab/nsp3127T127delACT---11AY.390.000025
ORF1ab/nsp3127T127IaCtaTt11AY.39.10.00004
ORF1ab/nsp3127T127PActCct11AY.40.000002
ORF1ab/nsp3127T127AActGct11AY.40.000002
ORF1ab/nsp3127T127TacTacC11AY.4.20.000022
ORF1ab/nsp3127T127NaCtaAt11AY.4.20.000022
ORF1ab/nsp3127T127TacTacC11AY.460.000104
ORF1ab/nsp3127T127IaCtaTt11AY.470.000031
ORF1ab/nsp3127T127delACT---11AY.470.000031
ORF1ab/nsp3127T127IaCtaTt11AY.50.000021
ORF1ab/nsp3127T127delACT---11AY.50.000021
ORF1ab/nsp3127T127NaCtaAt11AY.500.000799
ORF1ab/nsp3127T127IaCtaTt11AY.590.00053
ORF1ab/nsp3127T127IaCtaTt11AY.60.000041
ORF1ab/nsp3127T127NaCtaAt11AY.60.000041
ORF1ab/nsp3127T127TacTacC11AY.610.000105
ORF1ab/nsp3127T127IaCtaTt11AY.650.000533
ORF1ab/nsp3127T127IaCtaTt11AY.690.000187
ORF1ab/nsp3127T127NaCtaAt11AY.690.000187
ORF1ab/nsp3127T127IaCtaTt11AY.700.000209
ORF1ab/nsp3127T127NaCtaAt11AY.730.000665
ORF1ab/nsp3127T127IaCtaTt11AY.840.000437
ORF1ab/nsp3127T127TacTacC11AY.840.000437
ORF1ab/nsp3127T127PActCct11AY.9.10.000084
ORF1ab/nsp3127T127NaCtaAt11AY.9.20.000037
ORF1ab/nsp3127T127NaCtaAt11AY.900.000684
ORF1ab/nsp3127T127TacTacC11AY.910.00073
ORF1ab/nsp3127T127NaCtaAt11AY.980.000079
ORF1ab/nsp3127T127DACtGAt11AY.990.001049
ORF1ab/nsp3127T127NaCtaAt11B0.000128
ORF1ab/nsp3127T127delACT---11B.1.10.000018
ORF1ab/nsp3127T127VACTGTG11B.1.10.000018
ORF1ab/nsp3127T127delACT---11B.1.1.1450.037037
ORF1ab/nsp3127T127NaCtaAt11B.1.1.1610.003534
ORF1ab/nsp3127T127IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp3127T127IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp3127T127delACT---11B.1.1.2840.000107
ORF1ab/nsp3127T127IaCtaTt11B.1.1.4320.001266
ORF1ab/nsp3127T127IaCtaTt11B.1.1.4340.000349
ORF1ab/nsp3127T127IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp3127T127IaCtaTt11B.1.1.540.003021
ORF1ab/nsp3127T127del1aCta-t11B.1.1.70.000001
ORF1ab/nsp3127T127YACtTAt11B.1.1.70.000001
ORF1ab/nsp3127T127NaCtaAt11B.1.1390.000733
ORF1ab/nsp3127T127KaCTaAG11B.1.1570.002985
ORF1ab/nsp3127T127KaCTaAG11B.1.1600.000031
ORF1ab/nsp3127T127AActGct11B.1.1770.000013
ORF1ab/nsp3127T127NaCtaAt11B.1.177.100.000878
ORF1ab/nsp3127T127IaCtaTt11B.1.177.110.001698
ORF1ab/nsp3127T127delACT---11B.1.177.150.000631
ORF1ab/nsp3127T127NaCtaAt11B.1.177.150.000631
ORF1ab/nsp3127T127delACT---11B.1.177.530.002392
ORF1ab/nsp3127T127IaCtaTt11B.1.177.60.000977
ORF1ab/nsp3127T127IaCtaTt11B.1.177.600.000218
ORF1ab/nsp3127T127TacTacG11B.1.177.620.001192
ORF1ab/nsp3127T127IaCtaTt11B.1.177.860.000183
ORF1ab/nsp3127T127PActCct11B.1.20.000009
ORF1ab/nsp3127T127SActTct11B.1.20.000009
ORF1ab/nsp3127T127del1acTac-11B.1.20.000009
ORF1ab/nsp3127T127IaCtaTt11B.1.2140.003663
ORF1ab/nsp3127T127del1aCta-t11B.1.214.20.0006
ORF1ab/nsp3127T127TacTacC11B.1.2430.00007
ORF1ab/nsp3127T127delACT---11B.1.2580.000067
ORF1ab/nsp3127T127NaCtaAt11B.1.3360.002439
ORF1ab/nsp3127T127TacTacC11B.1.3510.00003
ORF1ab/nsp3127T127AActGct11B.1.3510.00003
ORF1ab/nsp3127T127IaCtaTt11B.1.36.170.000494
ORF1ab/nsp3127T127TacTacC11B.1.36.180.00042
ORF1ab/nsp3127T127NaCtaAt11B.1.36.290.000517
ORF1ab/nsp3127T127AActGct11B.1.3620.001541
ORF1ab/nsp3127T127NaCtaAt11B.1.3690.000285
ORF1ab/nsp3127T127TacTacC11B.1.3770.004566
ORF1ab/nsp3127T127TacTacC11B.1.3960.000706
ORF1ab/nsp3127T127NaCtaAt11B.1.4040.001302
ORF1ab/nsp3127T127delACT---11B.1.416.10.001563
ORF1ab/nsp3127T127TacTacC11B.1.4270.00005
ORF1ab/nsp3127T127delACT---11B.1.4290.000024
ORF1ab/nsp3127T127IaCtaTt11B.1.5250.000113
ORF1ab/nsp3127T127NaCtaAt11B.1.5260.000024
ORF1ab/nsp3127T127delACT---11B.1.5610.000397
ORF1ab/nsp3127T127NaCtaAt11B.1.5760.000907
ORF1ab/nsp3127T127TacTacG11B.1.5760.000907
ORF1ab/nsp3127T127TacTacC11B.1.5820.000491
ORF1ab/nsp3127T127SActTct11B.1.617.20.000004
ORF1ab/nsp3127T127PActCct11B.1.6210.000089
ORF1ab/nsp3127T127delACT---11B.1.6210.000089
ORF1ab/nsp3127T127TacTacC11C.36.30.000567
ORF1ab/nsp3127T127AActGct11C.370.000116
ORF1ab/nsp3127T127TacTacC11C.370.000116
ORF1ab/nsp3127T127NaCtaAt11P.10.000016
ORF1ab/nsp3127T127delACT---11P.1.10.000318
ORF1ab/nsp3127T127IaCtaTt11P.50.013699
ORF1ab/nsp3127T127TacTacG11Q.10.000126
ORF1ab/nsp3127T127TacTacC11Q.70.001111
ORF1ab/nsp3127T127TacTacG11W.30.005263