CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1269

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31269T1269IT2087InonsynaCaaTa816881650.9996336524-6526
ORF1ab/nsp31269T1269IT2087InonsynaCAaTT816830.0003672876524-6526
ORF1ab/nsp31269T1269TT2087TsynacAacG3372680.7952526524-6526
ORF1ab/nsp31269T1269TT2087TsynacAacT337540.1602376524-6526
ORF1ab/nsp31269T1269TT2087TsynacAacC337150.04451046524-6526
ORF1ab/nsp31269T1269delT2087deldelACA---27527516524-6526
ORF1ab/nsp31269T1269AT2087AnonsynAcaGca898916524-6526
ORF1ab/nsp31269T1269KT2087KnonsynaCaaAa373716524-6526
ORF1ab/nsp31269T1269del2T2087del2delaCAa--141416524-6526
ORF1ab/nsp31269T1269PT2087PnonsynAcaCca6616524-6526
ORF1ab/nsp31269T1269RT2087RnonsynaCaaGa6616524-6526
ORF1ab/nsp31269T1269ST2087SnonsynAcaTca6616524-6526
ORF1ab/nsp31269T1269del1T2087del1delaCaa-a630.56524-6526
ORF1ab/nsp31269T1269del1T2087del1delacAac-610.1666676524-6526
ORF1ab/nsp31269T1269del1T2087del1delACa-Na610.1666676524-6526
ORF1ab/nsp31269T1269del1T2087del1delAca-ca610.1666676524-6526
ORF1ab/nsp31269T1269LT2087LnonsynACaTTa210.56524-6526
ORF1ab/nsp31269T1269LT2087LnonsynACATTG210.56524-6526
ORF1ab/nsp31269T1269VT2087VnonsynACaGTa1116524-6526
ORF1ab/nsp31269T1269QT2087QnonsynACACAG1116524-6526

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31269T1269IaCaaTa81658168All0.001562
ORF1ab/nsp31269T1269IaCAaTT38168All0.000001
ORF1ab/nsp31269T1269IaCaaTa13271327B.1.1.70.001188
ORF1ab/nsp31269T1269IaCaaTa985985B.1.6370.071977
ORF1ab/nsp31269T1269IaCaaTa808808AY.40.001258
ORF1ab/nsp31269T1269IaCaaTa762764B.1.20.00671
ORF1ab/nsp31269T1269IaCAaTT2764B.1.20.000018
ORF1ab/nsp31269T1269IaCaaTa343343B.1.221.10.997093
ORF1ab/nsp31269T1269TacAacG268337All0.000051
ORF1ab/nsp31269T1269TacAacT54337All0.00001
ORF1ab/nsp31269T1269TacAacC15337All0.000003
ORF1ab/nsp31269T1269IaCaaTa320320B.1.617.20.001205
ORF1ab/nsp31269T1269IaCaaTa310310AY.4.20.006723
ORF1ab/nsp31269T1269delACA---275275All0.000053
ORF1ab/nsp31269T1269IaCaaTa219220AY.440.001333
ORF1ab/nsp31269T1269IaCAaTT1220AY.440.000006
ORF1ab/nsp31269T1269IaCaaTa183183AY.250.001101
ORF1ab/nsp31269T1269IaCaaTa136136AY.430.000603
ORF1ab/nsp31269T1269IaCaaTa123123B.10.001127
ORF1ab/nsp31269T1269IaCaaTa114114AY.1030.000708
ORF1ab/nsp31269T1269IaCaaTa108108AY.200.004197
ORF1ab/nsp31269T1269IaCaaTa108108AY.30.001074
ORF1ab/nsp31269T1269IaCaaTa9191AY.470.002831
ORF1ab/nsp31269T1269IaCaaTa9090B.1.1.2140.004991
ORF1ab/nsp31269T1269AAcaGca8989All0.000017
ORF1ab/nsp31269T1269IaCaaTa8484AY.9.20.003085
ORF1ab/nsp31269T1269IaCaaTa8484B.1.1600.00262
ORF1ab/nsp31269T1269IaCaaTa8282B.1.1770.00108
ORF1ab/nsp31269T1269IaCaaTa7676AY.1000.003497
ORF1ab/nsp31269T1269IaCaaTa7575AY.3.10.006394
ORF1ab/nsp31269T1269IaCaaTa7474B.1.3510.0022
ORF1ab/nsp31269T1269TacAacG5173B.1.1.70.000046
ORF1ab/nsp31269T1269TacAacT2173B.1.1.70.000019
ORF1ab/nsp31269T1269TacAacC173B.1.1.70.000001
ORF1ab/nsp31269T1269IaCaaTa7171P.10.001119
ORF1ab/nsp31269T1269IaCaaTa6262AY.260.001755
ORF1ab/nsp31269T1269delACA---5656A.270.092715
ORF1ab/nsp31269T1269IaCaaTa5454AY.1020.001432
ORF1ab/nsp31269T1269IaCaaTa5252B.1.10.000943
ORF1ab/nsp31269T1269IaCaaTa5050B.1.2210.003552
ORF1ab/nsp31269T1269IaCaaTa4949B.1.3110.013454
ORF1ab/nsp31269T1269IaCaaTa4646AY.1200.00171
ORF1ab/nsp31269T1269AAcaGca4646R.10.00414
ORF1ab/nsp31269T1269TacAacG4545B.1.177.350.031099
ORF1ab/nsp31269T1269delACA---3838B.1.1.70.000034
ORF1ab/nsp31269T1269KaCaaAa3737All0.000007
ORF1ab/nsp31269T1269IaCaaTa3737B.1.4290.000871
ORF1ab/nsp31269T1269IaCaaTa3737B.1.6030.393617
ORF1ab/nsp31269T1269IaCaaTa3434B.1.258.170.003535
ORF1ab/nsp31269T1269IaCaaTa3333AZ.20.027094
ORF1ab/nsp31269T1269IaCaaTa3333B.1.2430.002296
ORF1ab/nsp31269T1269TacAacG3131B.1.4090.024219
ORF1ab/nsp31269T1269IaCaaTa3030AY.390.000741
ORF1ab/nsp31269T1269IaCaaTa2929B.1.1.630.011188
ORF1ab/nsp31269T1269IaCaaTa2828B.1.1.5190.001112
ORF1ab/nsp31269T1269TacAacG2426AY.440.000146
ORF1ab/nsp31269T1269TacAacC226AY.440.000012
ORF1ab/nsp31269T1269IaCaaTa2626B.1.1.280.008092
ORF1ab/nsp31269T1269IaCaaTa2424AY.10.009497
ORF1ab/nsp31269T1269IaCaaTa2424B.1.177.750.024974
ORF1ab/nsp31269T1269IaCaaTa2424P.1.140.001147
ORF1ab/nsp31269T1269IaCaaTa2222B.1.360.00321
ORF1ab/nsp31269T1269IaCaaTa2121AY.50.000434
ORF1ab/nsp31269T1269IaCaaTa2121AY.540.002002
ORF1ab/nsp31269T1269IaCaaTa2121B.1.1.3320.65625
ORF1ab/nsp31269T1269IaCaaTa2121B.1.5260.000494
ORF1ab/nsp31269T1269TacAacG2020B.1.1.3690.008925
ORF1ab/nsp31269T1269IaCaaTa2020B.1.6360.134228
ORF1ab/nsp31269T1269IaCaaTa2020C.370.002321
ORF1ab/nsp31269T1269TacAacT1019AY.40.000016
ORF1ab/nsp31269T1269TacAacG919AY.40.000014
ORF1ab/nsp31269T1269delACA---1818AY.30.000179
ORF1ab/nsp31269T1269IaCaaTa1818Q.10.002274
ORF1ab/nsp31269T1269IaCaaTa1717AY.60.000699
ORF1ab/nsp31269T1269IaCaaTa1717AY.980.001343
ORF1ab/nsp31269T1269IaCaaTa1616AY.120.20.020566
ORF1ab/nsp31269T1269KaCaaAa1616B.1.1.70.000014
ORF1ab/nsp31269T1269IaCaaTa1616B.1.5750.004854
ORF1ab/nsp31269T1269IaCaaTa1515AY.420.000603
ORF1ab/nsp31269T1269IaCaaTa1515B.1.4270.000757
ORF1ab/nsp31269T1269del2aCAa--1414All0.000003
ORF1ab/nsp31269T1269delACA---1414AY.50.000289
ORF1ab/nsp31269T1269IaCaaTa1313AY.900.008898
ORF1ab/nsp31269T1269IaCaaTa1313B.1.177.810.002461
ORF1ab/nsp31269T1269TacAacG913B.1.617.20.000034
ORF1ab/nsp31269T1269TacAacC413B.1.617.20.000015
ORF1ab/nsp31269T1269IaCaaTa1212AY.450.00146
ORF1ab/nsp31269T1269TacAacG1212AY.470.000373
ORF1ab/nsp31269T1269IaCaaTa1212AY.5.40.00332
ORF1ab/nsp31269T1269delACA---1212B.1.10.000218
ORF1ab/nsp31269T1269IaCaaTa1212B.1.3690.003423
ORF1ab/nsp31269T1269IaCaaTa1111AY.230.000767
ORF1ab/nsp31269T1269TacAacG1111AY.750.000616
ORF1ab/nsp31269T1269del2aCAa--1111B.1.1.70.00001
ORF1ab/nsp31269T1269IaCaaTa1111B.1.177.770.007988
ORF1ab/nsp31269T1269IaCaaTa1010AY.270.000647
ORF1ab/nsp31269T1269delACA---1010AY.40.000016
ORF1ab/nsp31269T1269IaCaaTa1010AY.99.20.000922
ORF1ab/nsp31269T1269IaCaaTa1010B.1.1280.006353
ORF1ab/nsp31269T1269IaCaaTa1010B.1.160.140.021186
ORF1ab/nsp31269T1269IaCaaTa1010B.1.4330.031949
ORF1ab/nsp31269T1269delACA---1010B.1.5950.00261
ORF1ab/nsp31269T1269IaCaaTa1010B.1.5960.000871
ORF1ab/nsp31269T1269IaCaaTa1010P.1.120.00484
ORF1ab/nsp31269T1269delACA---99AS.20.140625
ORF1ab/nsp31269T1269IaCaaTa99AY.4.50.000967
ORF1ab/nsp31269T1269IaCaaTa99AY.820.012212
ORF1ab/nsp31269T1269IaCaaTa99AY.9.10.000754
ORF1ab/nsp31269T1269IaCaaTa99B.1.2410.007305
ORF1ab/nsp31269T1269IaCaaTa99B.1.36.170.004447
ORF1ab/nsp31269T1269delACA---99B.1.3980.026786
ORF1ab/nsp31269T1269IaCaaTa99B.1.5250.001018
ORF1ab/nsp31269T1269IaCaaTa88AY.1190.000282
ORF1ab/nsp31269T1269IaCaaTa88AY.290.000126
ORF1ab/nsp31269T1269IaCaaTa88AY.90.000541
ORF1ab/nsp31269T1269IaCaaTa88B.1.1.2220.001632
ORF1ab/nsp31269T1269IaCaaTa88B.1.1.370.001543
ORF1ab/nsp31269T1269delACA---88B.1.20.00007
ORF1ab/nsp31269T1269IaCaaTa88B.1.5490.057554
ORF1ab/nsp31269T1269IaCaaTa88P.1.10.002541
ORF1ab/nsp31269T1269AAcaGca77AY.250.000042
ORF1ab/nsp31269T1269TacAacC57AY.290.000079
ORF1ab/nsp31269T1269TacAacG27AY.290.000032
ORF1ab/nsp31269T1269IaCaaTa77AY.770.007892
ORF1ab/nsp31269T1269TacAacG77B.1.177.420.006261
ORF1ab/nsp31269T1269IaCaaTa77B.1.177.600.001529
ORF1ab/nsp31269T1269delACA---77B.1.3510.000208
ORF1ab/nsp31269T1269IaCaaTa77B.1.4280.007143
ORF1ab/nsp31269T1269delACA---77B.1.617.20.000026
ORF1ab/nsp31269T1269TacAacT67B.1.6370.000438
ORF1ab/nsp31269T1269TacAacG17B.1.6370.000073
ORF1ab/nsp31269T1269delACA---77P.10.00011
ORF1ab/nsp31269T1269IaCaaTa77P.1.70.002235
ORF1ab/nsp31269T1269IaCaaTa77P.60.022013
ORF1ab/nsp31269T1269SAcaTca66All0.000001
ORF1ab/nsp31269T1269RaCaaGa66All0.000001
ORF1ab/nsp31269T1269PAcaCca66All0.000001
ORF1ab/nsp31269T1269del1aCaa-a36All0.000001
ORF1ab/nsp31269T1269del1acAac-16All0
ORF1ab/nsp31269T1269del1ACa-Na16All0
ORF1ab/nsp31269T1269del1Aca-ca16All0
ORF1ab/nsp31269T1269IaCaaTa66AY.98.10.000291
ORF1ab/nsp31269T1269IaCaaTa66B.1.1.1700.007481
ORF1ab/nsp31269T1269IaCaaTa66B.1.1.1940.029703
ORF1ab/nsp31269T1269TacAacG56B.1.20.000044
ORF1ab/nsp31269T1269TacAacC16B.1.20.000009
ORF1ab/nsp31269T1269IaCaaTa66B.1.214.20.003597
ORF1ab/nsp31269T1269IaCaaTa66B.1.36.290.003104
ORF1ab/nsp31269T1269delACA---66B.1.5800.02439
ORF1ab/nsp31269T1269IaCaaTa55A0.001935
ORF1ab/nsp31269T1269IaCaaTa55AY.360.000741
ORF1ab/nsp31269T1269IaCaaTa55AY.380.002496
ORF1ab/nsp31269T1269IaCaaTa55AY.39.10.000198
ORF1ab/nsp31269T1269IaCaaTa55AY.460.00052
ORF1ab/nsp31269T1269KaCaaAa55AY.46.60.000361
ORF1ab/nsp31269T1269IaCaaTa55AY.710.002375
ORF1ab/nsp31269T1269delACA---55B.1.1770.000066
ORF1ab/nsp31269T1269IaCaaTa55B.1.36.80.005
ORF1ab/nsp31269T1269AAcaGca55B.1.617.20.000019
ORF1ab/nsp31269T1269IaCaaTa55C.36.20.172414
ORF1ab/nsp31269T1269RaCaaGa55C.370.00058
ORF1ab/nsp31269T1269IaCaaTa55D.20.000375
ORF1ab/nsp31269T1269delACA---44AY.1030.000025
ORF1ab/nsp31269T1269TacAacT44AY.1170.000338
ORF1ab/nsp31269T1269TacAacG44AY.1180.000251
ORF1ab/nsp31269T1269IaCaaTa44AY.1210.000541
ORF1ab/nsp31269T1269TacAacG44AY.430.000018
ORF1ab/nsp31269T1269IaCaaTa44AY.46.60.000289
ORF1ab/nsp31269T1269IaCaaTa44AY.610.000419
ORF1ab/nsp31269T1269IaCaaTa44AY.750.000224
ORF1ab/nsp31269T1269IaCaaTa44B0.000511
ORF1ab/nsp31269T1269delACA---44B.10.000037
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.2630.006231
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.390.002039
ORF1ab/nsp31269T1269AAcaGca44B.1.1.70.000004
ORF1ab/nsp31269T1269IaCaaTa44B.1.1.700.001364
ORF1ab/nsp31269T1269IaCaaTa44B.1.160.280.011696
ORF1ab/nsp31269T1269IaCaaTa44B.1.2580.000266
ORF1ab/nsp31269T1269IaCaaTa44B.1.258.110.001585
ORF1ab/nsp31269T1269IaCaaTa44B.1.4700.005618
ORF1ab/nsp31269T1269IaCaaTa44B.1.617.10.000516
ORF1ab/nsp31269T1269IaCaaTa44B.1.6210.000354
ORF1ab/nsp31269T1269IaCaaTa44P.1.170.000647
ORF1ab/nsp31269T1269IaCaaTa44Q.40.001819
ORF1ab/nsp31269T1269TacAacG33AY.1030.000019
ORF1ab/nsp31269T1269IaCaaTa33AY.1080.003308
ORF1ab/nsp31269T1269IaCaaTa33AY.240.001293
ORF1ab/nsp31269T1269TacAacG23AY.250.000012
ORF1ab/nsp31269T1269TacAacC13AY.250.000006
ORF1ab/nsp31269T1269delACA---33AY.290.000047
ORF1ab/nsp31269T1269IaCaaTa33AY.330.0002
ORF1ab/nsp31269T1269IaCaaTa33AY.340.000291
ORF1ab/nsp31269T1269IaCaaTa33AY.46.20.001906
ORF1ab/nsp31269T1269PAcaCca33B.10.000027
ORF1ab/nsp31269T1269TacAacT23B.10.000018
ORF1ab/nsp31269T1269TacAacG13B.10.000009
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.10.00098
ORF1ab/nsp31269T1269TacAacT33B.1.1.1530.003286
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.250.001706
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.2910.002227
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.3180.000905
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.330.001263
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.3540.013158
ORF1ab/nsp31269T1269IaCaaTa33B.1.1.4480.006098
ORF1ab/nsp31269T1269IaCaaTa33B.1.1110.003525
ORF1ab/nsp31269T1269TacAacG33B.1.1770.00004
ORF1ab/nsp31269T1269IaCaaTa33B.1.1950.015075
ORF1ab/nsp31269T1269IaCaaTa33B.1.2390.003663
ORF1ab/nsp31269T1269IaCaaTa33B.1.36.380.004926
ORF1ab/nsp31269T1269IaCaaTa33B.1.4740.005703
ORF1ab/nsp31269T1269IaCaaTa33B.1.4970.000944
ORF1ab/nsp31269T1269IaCaaTa33B.1.564.10.004732
ORF1ab/nsp31269T1269IaCaaTa33B.1.6230.001609
ORF1ab/nsp31269T1269IaCaaTa33Q.80.000495
ORF1ab/nsp31269T1269IaCaaTa33R.10.00027
ORF1ab/nsp31269T1269IaCaaTa22A.10.000564
ORF1ab/nsp31269T1269LACATTG12All0
ORF1ab/nsp31269T1269LACaTTa12All0
ORF1ab/nsp31269T1269delACA---22AY.1010.000981
ORF1ab/nsp31269T1269IaCaaTa22AY.1060.00067
ORF1ab/nsp31269T1269IaCaaTa22AY.1170.000169
ORF1ab/nsp31269T1269IaCaaTa22AY.120.000632
ORF1ab/nsp31269T1269IaCaaTa22AY.130.000322
ORF1ab/nsp31269T1269TacAacG22AY.140.000176
ORF1ab/nsp31269T1269IaCaaTa22AY.160.000759
ORF1ab/nsp31269T1269delACA---22AY.250.000012
ORF1ab/nsp31269T1269IaCaaTa22AY.320.001065
ORF1ab/nsp31269T1269AAcaGca22AY.320.001065
ORF1ab/nsp31269T1269IaCaaTa22AY.350.000466
ORF1ab/nsp31269T1269AAcaGca22AY.390.000049
ORF1ab/nsp31269T1269AAcaGca22AY.4.20.000043
ORF1ab/nsp31269T1269delACA---22AY.4.50.000215
ORF1ab/nsp31269T1269delACA---22AY.430.000009
ORF1ab/nsp31269T1269AAcaGca22AY.440.000012
ORF1ab/nsp31269T1269delACA---22AY.440.000012
ORF1ab/nsp31269T1269TacAacG22AY.46.60.000144
ORF1ab/nsp31269T1269IaCaaTa22AY.5.30.000675
ORF1ab/nsp31269T1269IaCaaTa22AY.560.00321
ORF1ab/nsp31269T1269IaCaaTa22AY.75.10.000361
ORF1ab/nsp31269T1269KaCaaAa22B.10.000018
ORF1ab/nsp31269T1269SAcaTca22B.10.000018
ORF1ab/nsp31269T1269TacAacG22B.1.10.000036
ORF1ab/nsp31269T1269IaCaaTa22B.1.1.2650.006309
ORF1ab/nsp31269T1269delACA---22B.1.1.3770.002762
ORF1ab/nsp31269T1269delACA---22B.1.1.5190.000079
ORF1ab/nsp31269T1269del1ACa-Na12B.1.1.70.000001
ORF1ab/nsp31269T1269del1acAac-12B.1.1.70.000001
ORF1ab/nsp31269T1269IaCaaTa22B.1.1.890.012121
ORF1ab/nsp31269T1269IaCaaTa22B.1.110.30.001437
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.150.001262
ORF1ab/nsp31269T1269KaCaaAa22B.1.177.50.002484
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.70.00033
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.80.001505
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.860.000367
ORF1ab/nsp31269T1269IaCaaTa22B.1.177.870.001456
ORF1ab/nsp31269T1269AAcaGca22B.1.2210.000142
ORF1ab/nsp31269T1269IaCaaTa22B.1.2340.000264
ORF1ab/nsp31269T1269IaCaaTa22B.1.2400.000431
ORF1ab/nsp31269T1269delACA---22B.1.2400.000431
ORF1ab/nsp31269T1269IaCaaTa22B.1.3490.00143
ORF1ab/nsp31269T1269IaCaaTa22B.1.36.310.003503
ORF1ab/nsp31269T1269IaCaaTa22B.1.3850.021277
ORF1ab/nsp31269T1269IaCaaTa22B.1.466.20.000782
ORF1ab/nsp31269T1269IaCaaTa22B.1.4990.002101
ORF1ab/nsp31269T1269IaCaaTa22B.1.5240.002813
ORF1ab/nsp31269T1269delACA---22B.1.5260.000047
ORF1ab/nsp31269T1269IaCaaTa22B.1.6090.000959
ORF1ab/nsp31269T1269KaCaaAa22B.1.617.20.000008
ORF1ab/nsp31269T1269IaCaaTa22B.1.6220.025974
ORF1ab/nsp31269T1269AAcaGca22B.1.6360.013423
ORF1ab/nsp31269T1269IaCaaTa22C.1.20.008511
ORF1ab/nsp31269T1269IaCaaTa22C.350.001548
ORF1ab/nsp31269T1269IaCaaTa22C.36.30.001134
ORF1ab/nsp31269T1269IaCaaTa22P.20.000373
ORF1ab/nsp31269T1269IaCaaTa11A.2.50.000499
ORF1ab/nsp31269T1269delACA---11A.280.002646
ORF1ab/nsp31269T1269IaCaaTa11AD.20.000219
ORF1ab/nsp31269T1269IaCaaTa11AK.10.012658
ORF1ab/nsp31269T1269QACACAG11All0
ORF1ab/nsp31269T1269VACaGTa11All0
ORF1ab/nsp31269T1269IaCaaTa11AT.10.005128
ORF1ab/nsp31269T1269IaCaaTa11AU.20.002421
ORF1ab/nsp31269T1269delACA---11AU.30.00211
ORF1ab/nsp31269T1269AAcaGca11AY.1000.000046
ORF1ab/nsp31269T1269TacAacG11AY.1020.000027
ORF1ab/nsp31269T1269IaCaaTa11AY.1070.000466
ORF1ab/nsp31269T1269AAcaGca11AY.1090.00074
ORF1ab/nsp31269T1269delACA---11AY.1100.000113
ORF1ab/nsp31269T1269IaCaaTa11AY.1160.000287
ORF1ab/nsp31269T1269delACA---11AY.1160.000287
ORF1ab/nsp31269T1269AAcaGca11AY.1180.000063
ORF1ab/nsp31269T1269IaCaaTa11AY.1180.000063
ORF1ab/nsp31269T1269delACA---11AY.1200.000037
ORF1ab/nsp31269T1269delACA---11AY.1210.000135
ORF1ab/nsp31269T1269IaCaaTa11AY.140.000088
ORF1ab/nsp31269T1269IaCaaTa11AY.190.00114
ORF1ab/nsp31269T1269IaCaaTa11AY.20.000356
ORF1ab/nsp31269T1269delACA---11AY.200.000039
ORF1ab/nsp31269T1269TacAacG11AY.200.000039
ORF1ab/nsp31269T1269AAcaGca11AY.260.000028
ORF1ab/nsp31269T1269delACA---11AY.260.000028
ORF1ab/nsp31269T1269IaCaaTa11AY.300.000396
ORF1ab/nsp31269T1269TacAacG11AY.330.000067
ORF1ab/nsp31269T1269delACA---11AY.330.000067
ORF1ab/nsp31269T1269TacAacG11AY.390.000025
ORF1ab/nsp31269T1269AAcaGca11AY.39.10.00004
ORF1ab/nsp31269T1269KaCaaAa11AY.40.000002
ORF1ab/nsp31269T1269RaCaaGa11AY.40.000002
ORF1ab/nsp31269T1269AAcaGca11AY.40.000002
ORF1ab/nsp31269T1269SAcaTca11AY.4.20.000022
ORF1ab/nsp31269T1269KaCaaAa11AY.4.20.000022
ORF1ab/nsp31269T1269TacAacG11AY.4.2.10.000149
ORF1ab/nsp31269T1269del2aCAa--11AY.4.50.000107
ORF1ab/nsp31269T1269TacAacT11AY.420.00004
ORF1ab/nsp31269T1269AAcaGca11AY.430.000004
ORF1ab/nsp31269T1269KaCaaAa11AY.430.000004
ORF1ab/nsp31269T1269IaCaaTa11AY.46.40.000165
ORF1ab/nsp31269T1269IaCaaTa11AY.46.50.000198
ORF1ab/nsp31269T1269delACA---11AY.46.60.000072
ORF1ab/nsp31269T1269IaCaaTa11AY.480.000465
ORF1ab/nsp31269T1269TacAacG11AY.50.000021
ORF1ab/nsp31269T1269TacAacG11AY.510.000909
ORF1ab/nsp31269T1269TacAacG11AY.540.000095
ORF1ab/nsp31269T1269delACA---11AY.540.000095
ORF1ab/nsp31269T1269IaCaaTa11AY.550.000917
ORF1ab/nsp31269T1269IaCaaTa11AY.590.00053
ORF1ab/nsp31269T1269IaCaaTa11AY.650.000533
ORF1ab/nsp31269T1269delACA---11AY.660.00107
ORF1ab/nsp31269T1269IaCaaTa11AY.680.000274
ORF1ab/nsp31269T1269IaCaaTa11AY.70.000196
ORF1ab/nsp31269T1269IaCaaTa11AY.700.000209
ORF1ab/nsp31269T1269delACA---11AY.720.001361
ORF1ab/nsp31269T1269IaCaaTa11AY.740.000116
ORF1ab/nsp31269T1269delACA---11AY.750.000056
ORF1ab/nsp31269T1269IaCaaTa11AY.790.001211
ORF1ab/nsp31269T1269delACA---11AY.840.000437
ORF1ab/nsp31269T1269KaCaaAa11AY.870.000833
ORF1ab/nsp31269T1269IaCaaTa11AY.880.000884
ORF1ab/nsp31269T1269del2aCAa--11AY.90.000068
ORF1ab/nsp31269T1269IaCaaTa11AY.920.000287
ORF1ab/nsp31269T1269AAcaGca11AY.980.000079
ORF1ab/nsp31269T1269TacAacG11AY.980.000079
ORF1ab/nsp31269T1269AAcaGca11B.10.000009
ORF1ab/nsp31269T1269KaCaaAa11B.1.10.000018
ORF1ab/nsp31269T1269SAcaTca11B.1.10.000018
ORF1ab/nsp31269T1269LACaTTa11B.1.10.000018
ORF1ab/nsp31269T1269AAcaGca11B.1.1.10.000327
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1280.007092
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1690.018182
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1740.003378
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1760.000439
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.1890.001513
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2070.001182
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2280.003049
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2410.00207
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2530.002506
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2790.001121
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2840.000107
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.2980.000862
ORF1ab/nsp31269T1269delACA---11B.1.1.3000.010753
ORF1ab/nsp31269T1269TacAacT11B.1.1.3060.000438
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3160.000925
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp31269T1269delACA---11B.1.1.3480.000796
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp31269T1269SAcaTca11B.1.1.3680.003086
ORF1ab/nsp31269T1269AAcaGca11B.1.1.3680.003086
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.3720.000689
ORF1ab/nsp31269T1269delACA---11B.1.1.3750.011905
ORF1ab/nsp31269T1269delACA---11B.1.1.4010.066667
ORF1ab/nsp31269T1269SAcaTca11B.1.1.4090.002833
ORF1ab/nsp31269T1269delACA---11B.1.1.4090.002833
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.4320.001266
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.500.000679
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.5060.037037
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.5070.008696
ORF1ab/nsp31269T1269PAcaCca11B.1.1.70.000001
ORF1ab/nsp31269T1269IaCaaTa11B.1.1.80.003584
ORF1ab/nsp31269T1269delACA---11B.1.1600.000031
ORF1ab/nsp31269T1269TacAacG11B.1.1600.000031
ORF1ab/nsp31269T1269PAcaCca11B.1.1670.007812
ORF1ab/nsp31269T1269del1aCaa-a11B.1.1770.000013
ORF1ab/nsp31269T1269AAcaGca11B.1.1770.000013
ORF1ab/nsp31269T1269KaCaaAa11B.1.1770.000013
ORF1ab/nsp31269T1269del2aCAa--11B.1.1770.000013
ORF1ab/nsp31269T1269KaCaaAa11B.1.177.150.000631
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.160.000664
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.20.004545
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.210.000076
ORF1ab/nsp31269T1269KaCaaAa11B.1.177.380.010417
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.430.001477
ORF1ab/nsp31269T1269TacAacG11B.1.177.480.003125
ORF1ab/nsp31269T1269delACA---11B.1.177.510.004566
ORF1ab/nsp31269T1269TacAacG11B.1.177.560.000668
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.580.001332
ORF1ab/nsp31269T1269del1aCaa-a11B.1.177.630.002703
ORF1ab/nsp31269T1269TacAacT11B.1.177.650.000665
ORF1ab/nsp31269T1269IaCaaTa11B.1.177.730.000566
ORF1ab/nsp31269T1269delACA---11B.1.177.830.001481
ORF1ab/nsp31269T1269IaCaaTa11B.1.1820.007246
ORF1ab/nsp31269T1269KaCaaAa11B.1.20.000009
ORF1ab/nsp31269T1269IaCaaTa11B.1.2060.000816
ORF1ab/nsp31269T1269IaCaaTa11B.1.230.006061
ORF1ab/nsp31269T1269IaCaaTa11B.1.2320.000537
ORF1ab/nsp31269T1269IaCaaTa11B.1.2370.004975
ORF1ab/nsp31269T1269KaCaaAa11B.1.2400.000216
ORF1ab/nsp31269T1269TacAacG11B.1.2430.00007
ORF1ab/nsp31269T1269IaCaaTa11B.1.2790.000514
ORF1ab/nsp31269T1269IaCaaTa11B.1.3200.001245
ORF1ab/nsp31269T1269IaCaaTa11B.1.3240.001605
ORF1ab/nsp31269T1269IaCaaTa11B.1.3290.000608
ORF1ab/nsp31269T1269IaCaaTa11B.1.351.20.000303
ORF1ab/nsp31269T1269del1aCaa-a11B.1.360.000146
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.180.00042
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.220.001208
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.70.004
ORF1ab/nsp31269T1269IaCaaTa11B.1.36.90.003215
ORF1ab/nsp31269T1269IaCaaTa11B.1.3670.000792
ORF1ab/nsp31269T1269IaCaaTa11B.1.3890.001002
ORF1ab/nsp31269T1269IaCaaTa11B.1.3970.004854
ORF1ab/nsp31269T1269IaCaaTa11B.1.4000.000429
ORF1ab/nsp31269T1269IaCaaTa11B.1.4010.008197
ORF1ab/nsp31269T1269IaCaaTa11B.1.4040.001302
ORF1ab/nsp31269T1269delACA---11B.1.4090.000781
ORF1ab/nsp31269T1269TacAacG11B.1.4270.00005
ORF1ab/nsp31269T1269delACA---11B.1.4290.000024
ORF1ab/nsp31269T1269AAcaGca11B.1.4290.000024
ORF1ab/nsp31269T1269TacAacG11B.1.438.10.000107
ORF1ab/nsp31269T1269TacAacT11B.1.4560.003268
ORF1ab/nsp31269T1269TacAacT11B.1.4710.002732
ORF1ab/nsp31269T1269IaCaaTa11B.1.4800.002488
ORF1ab/nsp31269T1269TacAacC11B.1.5260.000024
ORF1ab/nsp31269T1269IaCaaTa11B.1.5510.00129
ORF1ab/nsp31269T1269TacAacT11B.1.5640.000426
ORF1ab/nsp31269T1269IaCaaTa11B.1.5650.00081
ORF1ab/nsp31269T1269IaCaaTa11B.1.5670.003333
ORF1ab/nsp31269T1269del1Aca-ca11B.1.5960.000087
ORF1ab/nsp31269T1269IaCaaTa11B.1.6120.002653
ORF1ab/nsp31269T1269AAcaGca11B.1.617.10.000129
ORF1ab/nsp31269T1269QACACAG11B.1.617.20.000004
ORF1ab/nsp31269T1269TacAacG11B.1.6210.000089
ORF1ab/nsp31269T1269IaCaaTa11B.1.621.10.000506
ORF1ab/nsp31269T1269IaCaaTa11B.1.6280.000352
ORF1ab/nsp31269T1269delACA---11B.1.6300.005236
ORF1ab/nsp31269T1269VACaGTa11B.1.6370.000073
ORF1ab/nsp31269T1269delACA---11B.1.6370.000073
ORF1ab/nsp31269T1269IaCaaTa11B.400.000364
ORF1ab/nsp31269T1269PAcaCca11B.60.00091
ORF1ab/nsp31269T1269delACA---11C.160.00106
ORF1ab/nsp31269T1269IaCaaTa11C.20.016129
ORF1ab/nsp31269T1269AAcaGca11C.350.000774
ORF1ab/nsp31269T1269TacAacG11C.350.000774
ORF1ab/nsp31269T1269delACA---11C.360.000911
ORF1ab/nsp31269T1269TacAacT11C.370.000116
ORF1ab/nsp31269T1269IaCaaTa11C.37.10.002618
ORF1ab/nsp31269T1269IaCaaTa11C.40.01
ORF1ab/nsp31269T1269delACA---11D.20.000075
ORF1ab/nsp31269T1269IaCaaTa11D.50.004975
ORF1ab/nsp31269T1269IaCaaTa11N.50.001767
ORF1ab/nsp31269T1269LACATTG11P.10.000016
ORF1ab/nsp31269T1269IaCaaTa11P.1.150.000232
ORF1ab/nsp31269T1269IaCaaTa11P.1.160.000374
ORF1ab/nsp31269T1269TacAacT11P.1.20.001156
ORF1ab/nsp31269T1269IaCaaTa11P.70.004367
ORF1ab/nsp31269T1269IaCaaTa11Q.70.001111
ORF1ab/nsp31269T1269TacAacG11Q.80.000165
ORF1ab/nsp31269T1269IaCaaTa11W.30.005263