CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1261 | P1261S | P2079S | nonsyn | Cca | Tca | 4170 | 4168 | 0.99952 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261S | P2079S | nonsyn | CcA | TcT | 4170 | 1 | 0.000239808 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261S | P2079S | nonsyn | CcA | TcG | 4170 | 1 | 0.000239808 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261L | P2079L | nonsyn | cCa | cTa | 2030 | 2027 | 0.998522 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261L | P2079L | nonsyn | CCa | TTa | 2030 | 3 | 0.00147783 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261P | P2079P | syn | ccA | ccG | 326 | 169 | 0.518405 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261P | P2079P | syn | ccA | ccT | 326 | 80 | 0.245399 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261P | P2079P | syn | ccA | ccC | 326 | 77 | 0.236196 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261Q | P2079Q | nonsyn | cCa | cAa | 169 | 168 | 0.994083 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261Q | P2079Q | nonsyn | cCA | cAG | 169 | 1 | 0.00591716 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261T | P2079T | nonsyn | Cca | Aca | 105 | 103 | 0.980952 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261T | P2079T | nonsyn | CcA | AcC | 105 | 1 | 0.00952381 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261T | P2079T | nonsyn | CcA | AcT | 105 | 1 | 0.00952381 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261del | P2079del | del | CCA | --- | 34 | 34 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261R | P2079R | nonsyn | cCa | cGa | 10 | 10 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261K | P2079K | nonsyn | CCa | AAa | 2 | 2 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261del1 | P2079del1 | del | Cca | -ca | 2 | 1 | 0.5 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261del1 | P2079del1 | del | ccA | cc- | 2 | 1 | 0.5 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261G | P2079G | nonsyn | CCa | GGa | 1 | 1 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261H | P2079H | nonsyn | cCA | cAT | 1 | 1 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261N | P2079N | nonsyn | CCA | AAT | 1 | 1 | 1 | 6500-6502 |
ORF1ab/nsp3 | 1261 | P1261A | P2079A | nonsyn | Cca | Gca | 1 | 1 | 1 | 6500-6502 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4168 | 4170 | All | 0.000797 |
ORF1ab/nsp3 | 1261 | P1261S | CcA | TcT | 1 | 4170 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261S | CcA | TcG | 1 | 4170 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2027 | 2030 | All | 0.000388 |
ORF1ab/nsp3 | 1261 | P1261L | CCa | TTa | 3 | 2030 | All | 0.000001 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 521 | 521 | B.1.1.7 | 0.000466 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 412 | 412 | AY.25 | 0.002478 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 402 | 402 | B.1.617.2 | 0.001514 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 349 | 349 | B.1.596 | 0.030411 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 341 | 341 | B.1.1.7 | 0.000305 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 169 | 326 | All | 0.000032 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 80 | 326 | All | 0.000015 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 77 | 326 | All | 0.000015 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 324 | 325 | AY.43 | 0.001435 |
ORF1ab/nsp3 | 1261 | P1261S | CcA | TcG | 1 | 325 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 283 | 283 | AY.4 | 0.00044 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 240 | 240 | B.1.438.1 | 0.025743 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 210 | 210 | AY.46.4 | 0.034545 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 201 | 201 | B.1.448 | 0.527559 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 168 | 169 | All | 0.000032 |
ORF1ab/nsp3 | 1261 | P1261Q | cCA | cAG | 1 | 169 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 169 | 169 | B.1.2 | 0.001488 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 167 | 167 | AY.74 | 0.019313 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 162 | 163 | B.1 | 0.001484 |
ORF1ab/nsp3 | 1261 | P1261S | CcA | TcT | 1 | 163 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 114 | 114 | AY.7.1 | 0.012848 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 103 | 105 | All | 0.00002 |
ORF1ab/nsp3 | 1261 | P1261T | CcA | AcT | 1 | 105 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261T | CcA | AcC | 1 | 105 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 100 | 101 | AY.103 | 0.000621 |
ORF1ab/nsp3 | 1261 | P1261L | CCa | TTa | 1 | 101 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 98 | 98 | B.1.243 | 0.006819 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 95 | 95 | B.1 | 0.00087 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 84 | 84 | B.1.526 | 0.001974 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 80 | 80 | AY.5 | 0.001652 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 74 | 74 | B.1.1 | 0.001342 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 74 | 74 | B.1.2 | 0.000652 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 74 | 74 | B.1.617.2 | 0.000279 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 71 | 71 | AY.102 | 0.001882 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 58 | 66 | AY.29 | 0.000915 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 5 | 66 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 3 | 66 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 54 | 54 | AY.43 | 0.000239 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 51 | 51 | P.1 | 0.000803 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 50 | 50 | B.1.427 | 0.002525 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 49 | 49 | B.1.1.519 | 0.001946 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 47 | 47 | AY.10 | 0.024907 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 46 | 46 | B.1.177 | 0.000606 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 44 | 44 | AY.103 | 0.000273 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 44 | 44 | AY.44 | 0.000268 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 40 | 40 | AY.34 | 0.003879 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 39 | 39 | B.1.1.394 | 0.95122 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 38 | 38 | B.1.401 | 0.311475 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 34 | 34 | All | 0.000007 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 22 | 31 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 9 | 31 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 31 | 31 | B.1.258.17 | 0.003223 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 30 | 30 | AY.49 | 0.095847 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 28 | 28 | AY.4.2.1 | 0.004172 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 25 | 26 | P.1 | 0.000394 |
ORF1ab/nsp3 | 1261 | P1261L | CCa | TTa | 1 | 26 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 24 | 24 | AY.23 | 0.001674 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 24 | 24 | B.1.596 | 0.002091 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 23 | 23 | B.1.36.22 | 0.027778 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 22 | 22 | B.1.609 | 0.010547 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 18 | 19 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 19 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 14 | 19 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 5 | 19 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 17 | 18 | AY.103 | 0.000106 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 18 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 18 | 18 | AY.34 | 0.001745 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 18 | 18 | R.1 | 0.00162 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 17 | 17 | B.1.1.176 | 0.007469 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 16 | 16 | B.1.422 | 0.012998 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 15 | 15 | B.1.311 | 0.004119 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 13 | 13 | AY.14 | 0.001144 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 6 | 12 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 6 | 12 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 12 | 12 | B.1.240 | 0.002587 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 12 | 12 | B.1.36.38 | 0.019704 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 11 | 11 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 11 | 11 | B.1.509 | 0.009524 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 9 | 10 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 1261 | P1261Q | cCA | cAG | 1 | 10 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 9 | 9 | B.1.582 | 0.004416 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 5 | 8 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 2 | 8 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 7 | 7 | B | 0.000895 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | B.1.1.372 | 0.004821 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | B.1.177.9 | 0.009321 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | B.1.177.43 | 0.008863 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 5 | 5 | A.19 | 0.04717 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | AY.78 | 0.006163 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | B.1.177.85 | 0.021739 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | B.1.214.3 | 0.028571 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 4 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1261 | P1261L | CCa | TTa | 1 | 4 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 4 | 4 | B.28 | 0.013115 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 4 | 4 | N.4 | 0.017021 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AE.8 | 0.001467 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261T | CcA | AcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1261 | P1261K | CCa | AAa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261del1 | ccA | cc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261del1 | Cca | -ca | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | B.1.177.79 | 0.004684 |
ORF1ab/nsp3 | 1261 | P1261del1 | ccA | cc- | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261del1 | Cca | -ca | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | B.1.243.2 | 0.028986 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.319 | 0.006098 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1261 | P1261K | CCa | AAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261H | cCA | cAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261N | CCA | AAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp3 | 1261 | P1261N | CCA | AAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261G | CCa | GGa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261A | Cca | Gca | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261H | cCA | cAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1261 | P1261R | cCa | cGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261T | CcA | AcC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261K | CCa | AAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1261 | P1261G | CCa | GGa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1261 | P1261Q | cCa | cAa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1261 | P1261T | Cca | Aca | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1261 | P1261del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1261 | P1261A | Cca | Gca | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1261 | P1261L | cCa | cTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1261 | P1261S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1261 | P1261P | ccA | ccG | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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