CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1261

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31261P1261SP2079SnonsynCcaTca417041680.999526500-6502
ORF1ab/nsp31261P1261SP2079SnonsynCcATcT417010.0002398086500-6502
ORF1ab/nsp31261P1261SP2079SnonsynCcATcG417010.0002398086500-6502
ORF1ab/nsp31261P1261LP2079LnonsyncCacTa203020270.9985226500-6502
ORF1ab/nsp31261P1261LP2079LnonsynCCaTTa203030.001477836500-6502
ORF1ab/nsp31261P1261PP2079PsynccAccG3261690.5184056500-6502
ORF1ab/nsp31261P1261PP2079PsynccAccT326800.2453996500-6502
ORF1ab/nsp31261P1261PP2079PsynccAccC326770.2361966500-6502
ORF1ab/nsp31261P1261QP2079QnonsyncCacAa1691680.9940836500-6502
ORF1ab/nsp31261P1261QP2079QnonsyncCAcAG16910.005917166500-6502
ORF1ab/nsp31261P1261TP2079TnonsynCcaAca1051030.9809526500-6502
ORF1ab/nsp31261P1261TP2079TnonsynCcAAcC10510.009523816500-6502
ORF1ab/nsp31261P1261TP2079TnonsynCcAAcT10510.009523816500-6502
ORF1ab/nsp31261P1261delP2079deldelCCA---343416500-6502
ORF1ab/nsp31261P1261RP2079RnonsyncCacGa101016500-6502
ORF1ab/nsp31261P1261KP2079KnonsynCCaAAa2216500-6502
ORF1ab/nsp31261P1261del1P2079del1delCca-ca210.56500-6502
ORF1ab/nsp31261P1261del1P2079del1delccAcc-210.56500-6502
ORF1ab/nsp31261P1261GP2079GnonsynCCaGGa1116500-6502
ORF1ab/nsp31261P1261HP2079HnonsyncCAcAT1116500-6502
ORF1ab/nsp31261P1261NP2079NnonsynCCAAAT1116500-6502
ORF1ab/nsp31261P1261AP2079AnonsynCcaGca1116500-6502

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31261P1261SCcaTca41684170All0.000797
ORF1ab/nsp31261P1261SCcATcT14170All0
ORF1ab/nsp31261P1261SCcATcG14170All0
ORF1ab/nsp31261P1261LcCacTa20272030All0.000388
ORF1ab/nsp31261P1261LCCaTTa32030All0.000001
ORF1ab/nsp31261P1261LcCacTa521521B.1.1.70.000466
ORF1ab/nsp31261P1261SCcaTca412412AY.250.002478
ORF1ab/nsp31261P1261SCcaTca402402B.1.617.20.001514
ORF1ab/nsp31261P1261LcCacTa349349B.1.5960.030411
ORF1ab/nsp31261P1261SCcaTca341341B.1.1.70.000305
ORF1ab/nsp31261P1261PccAccG169326All0.000032
ORF1ab/nsp31261P1261PccAccT80326All0.000015
ORF1ab/nsp31261P1261PccAccC77326All0.000015
ORF1ab/nsp31261P1261SCcaTca324325AY.430.001435
ORF1ab/nsp31261P1261SCcATcG1325AY.430.000004
ORF1ab/nsp31261P1261SCcaTca283283AY.40.00044
ORF1ab/nsp31261P1261SCcaTca240240B.1.438.10.025743
ORF1ab/nsp31261P1261LcCacTa210210AY.46.40.034545
ORF1ab/nsp31261P1261SCcaTca201201B.1.4480.527559
ORF1ab/nsp31261P1261QcCacAa168169All0.000032
ORF1ab/nsp31261P1261QcCAcAG1169All0
ORF1ab/nsp31261P1261SCcaTca169169B.1.20.001488
ORF1ab/nsp31261P1261SCcaTca167167AY.740.019313
ORF1ab/nsp31261P1261SCcaTca162163B.10.001484
ORF1ab/nsp31261P1261SCcATcT1163B.10.000009
ORF1ab/nsp31261P1261QcCacAa114114AY.7.10.012848
ORF1ab/nsp31261P1261TCcaAca103105All0.00002
ORF1ab/nsp31261P1261TCcAAcT1105All0
ORF1ab/nsp31261P1261TCcAAcC1105All0
ORF1ab/nsp31261P1261LcCacTa100101AY.1030.000621
ORF1ab/nsp31261P1261LCCaTTa1101AY.1030.000006
ORF1ab/nsp31261P1261SCcaTca9898B.1.2430.006819
ORF1ab/nsp31261P1261LcCacTa9595B.10.00087
ORF1ab/nsp31261P1261SCcaTca8484B.1.5260.001974
ORF1ab/nsp31261P1261LcCacTa8080AY.50.001652
ORF1ab/nsp31261P1261TCcaAca7474B.1.10.001342
ORF1ab/nsp31261P1261LcCacTa7474B.1.20.000652
ORF1ab/nsp31261P1261LcCacTa7474B.1.617.20.000279
ORF1ab/nsp31261P1261LcCacTa7272AY.40.000112
ORF1ab/nsp31261P1261SCcaTca7171AY.1020.001882
ORF1ab/nsp31261P1261PccAccC5866AY.290.000915
ORF1ab/nsp31261P1261PccAccT566AY.290.000079
ORF1ab/nsp31261P1261PccAccG366AY.290.000047
ORF1ab/nsp31261P1261LcCacTa5454AY.430.000239
ORF1ab/nsp31261P1261SCcaTca5151P.10.000803
ORF1ab/nsp31261P1261SCcaTca5050B.1.4270.002525
ORF1ab/nsp31261P1261SCcaTca4949B.1.1.5190.001946
ORF1ab/nsp31261P1261SCcaTca4747AY.100.024907
ORF1ab/nsp31261P1261SCcaTca4646B.1.1770.000606
ORF1ab/nsp31261P1261SCcaTca4444AY.1030.000273
ORF1ab/nsp31261P1261SCcaTca4444AY.440.000268
ORF1ab/nsp31261P1261SCcaTca4040AY.340.003879
ORF1ab/nsp31261P1261SCcaTca3939B.1.1.3940.95122
ORF1ab/nsp31261P1261SCcaTca3838B.1.4010.311475
ORF1ab/nsp31261P1261delCCA---3434All0.000007
ORF1ab/nsp31261P1261SCcaTca3131AY.290.000489
ORF1ab/nsp31261P1261PccAccG2231B.1.1.70.00002
ORF1ab/nsp31261P1261PccAccT931B.1.1.70.000008
ORF1ab/nsp31261P1261LcCacTa3131B.1.258.170.003223
ORF1ab/nsp31261P1261SCcaTca3030AY.490.095847
ORF1ab/nsp31261P1261SCcaTca2929AY.30.000288
ORF1ab/nsp31261P1261LcCacTa2828AY.4.2.10.004172
ORF1ab/nsp31261P1261LcCacTa2526P.10.000394
ORF1ab/nsp31261P1261LCCaTTa126P.10.000016
ORF1ab/nsp31261P1261SCcaTca2424AY.230.001674
ORF1ab/nsp31261P1261SCcaTca2424B.1.5960.002091
ORF1ab/nsp31261P1261PccAccG2323B.1.36.220.027778
ORF1ab/nsp31261P1261SCcaTca2222B.1.6090.010547
ORF1ab/nsp31261P1261LcCacTa2121AY.440.000128
ORF1ab/nsp31261P1261QcCacAa2020AY.30.000199
ORF1ab/nsp31261P1261SCcaTca2020B.1.10.000363
ORF1ab/nsp31261P1261LcCacTa1919AY.250.000114
ORF1ab/nsp31261P1261PccAccT1819AY.390.000445
ORF1ab/nsp31261P1261PccAccG119AY.390.000025
ORF1ab/nsp31261P1261PccAccT1419B.1.2580.000932
ORF1ab/nsp31261P1261PccAccG519B.1.2580.000333
ORF1ab/nsp31261P1261PccAccG1718AY.1030.000106
ORF1ab/nsp31261P1261PccAccT118AY.1030.000006
ORF1ab/nsp31261P1261PccAccG1818AY.340.001745
ORF1ab/nsp31261P1261SCcaTca1818AY.390.000445
ORF1ab/nsp31261P1261SCcaTca1818AY.470.00056
ORF1ab/nsp31261P1261SCcaTca1818R.10.00162
ORF1ab/nsp31261P1261SCcaTca1717B.1.1.1760.007469
ORF1ab/nsp31261P1261SCcaTca1616B.1.4220.012998
ORF1ab/nsp31261P1261SCcaTca1515B.1.3110.004119
ORF1ab/nsp31261P1261SCcaTca1515B.1.6370.001096
ORF1ab/nsp31261P1261SCcaTca1414AY.50.000289
ORF1ab/nsp31261P1261SCcaTca1313AY.140.001144
ORF1ab/nsp31261P1261SCcaTca1313AY.200.000505
ORF1ab/nsp31261P1261SCcaTca1212AY.1000.000552
ORF1ab/nsp31261P1261SCcaTca1212AY.610.001257
ORF1ab/nsp31261P1261PccAccG612B.1.20.000053
ORF1ab/nsp31261P1261PccAccT612B.1.20.000053
ORF1ab/nsp31261P1261SCcaTca1212B.1.2400.002587
ORF1ab/nsp31261P1261LcCacTa1212B.1.36.380.019704
ORF1ab/nsp31261P1261SCcaTca1111AY.1180.000689
ORF1ab/nsp31261P1261SCcaTca1111B.1.3510.000327
ORF1ab/nsp31261P1261SCcaTca1111B.1.360.001605
ORF1ab/nsp31261P1261LcCacTa1111B.1.4290.000259
ORF1ab/nsp31261P1261PccAccC1111B.1.5090.009524
ORF1ab/nsp31261P1261PccAccG911B.1.617.20.000034
ORF1ab/nsp31261P1261PccAccT111B.1.617.20.000004
ORF1ab/nsp31261P1261PccAccC111B.1.617.20.000004
ORF1ab/nsp31261P1261RcCacGa1010All0.000002
ORF1ab/nsp31261P1261SCcaTca1010AY.4.20.000217
ORF1ab/nsp31261P1261PccAccG1010AY.470.000311
ORF1ab/nsp31261P1261QcCacAa910AY.98.10.000436
ORF1ab/nsp31261P1261QcCAcAG110AY.98.10.000048
ORF1ab/nsp31261P1261SCcaTca1010P.1.150.002323
ORF1ab/nsp31261P1261LcCacTa99AY.200.00035
ORF1ab/nsp31261P1261SCcaTca99AY.460.000937
ORF1ab/nsp31261P1261delCCA---99B.1.1.70.000008
ORF1ab/nsp31261P1261SCcaTca99B.1.5820.004416
ORF1ab/nsp31261P1261PccAccG58AY.40.000008
ORF1ab/nsp31261P1261PccAccT28AY.40.000003
ORF1ab/nsp31261P1261PccAccC18AY.40.000002
ORF1ab/nsp31261P1261LcCacTa88B.1.1.330.003367
ORF1ab/nsp31261P1261LcCacTa88B.1.1770.000105
ORF1ab/nsp31261P1261SCcaTca88B.1.3690.002282
ORF1ab/nsp31261P1261PccAccG77AY.1020.000186
ORF1ab/nsp31261P1261LcCacTa77AY.1020.000186
ORF1ab/nsp31261P1261SCcaTca77AY.1170.000592
ORF1ab/nsp31261P1261SCcaTca77AY.1200.00026
ORF1ab/nsp31261P1261SCcaTca77AY.260.000198
ORF1ab/nsp31261P1261SCcaTca77AY.750.000392
ORF1ab/nsp31261P1261LcCacTa77B0.000895
ORF1ab/nsp31261P1261SCcaTca77B.1.1.3720.004821
ORF1ab/nsp31261P1261SCcaTca77B.1.177.90.009321
ORF1ab/nsp31261P1261SCcaTca77B.1.4290.000165
ORF1ab/nsp31261P1261LcCacTa77B.1.617.10.000903
ORF1ab/nsp31261P1261SCcaTca66AY.1130.000854
ORF1ab/nsp31261P1261LcCacTa66AY.460.000624
ORF1ab/nsp31261P1261LcCacTa66B.1.10.000109
ORF1ab/nsp31261P1261LcCacTa66B.1.1.5190.000238
ORF1ab/nsp31261P1261LcCacTa66B.1.1600.000187
ORF1ab/nsp31261P1261LcCacTa66B.1.177.430.008863
ORF1ab/nsp31261P1261LcCacTa66B.1.3110.001647
ORF1ab/nsp31261P1261SCcaTca66B.1.6210.000531
ORF1ab/nsp31261P1261SCcaTca66P.1.70.001916
ORF1ab/nsp31261P1261SCcaTca55A.190.04717
ORF1ab/nsp31261P1261LcCacTa55AY.1190.000177
ORF1ab/nsp31261P1261TCcaAca55AY.4.20.000108
ORF1ab/nsp31261P1261LcCacTa55B.1.1.2140.000277
ORF1ab/nsp31261P1261SCcaTca55B.1.1.630.001929
ORF1ab/nsp31261P1261PccAccT55B.1.6210.000443
ORF1ab/nsp31261P1261SCcaTca55P.1.140.000239
ORF1ab/nsp31261P1261PccAccG55R.10.00045
ORF1ab/nsp31261P1261LcCacTa44AY.1170.000338
ORF1ab/nsp31261P1261LcCacTa44AY.230.000279
ORF1ab/nsp31261P1261SCcaTca44AY.360.000593
ORF1ab/nsp31261P1261SCcaTca44AY.39.10.000158
ORF1ab/nsp31261P1261SCcaTca44AY.4.50.00043
ORF1ab/nsp31261P1261SCcaTca44AY.450.000487
ORF1ab/nsp31261P1261SCcaTca44AY.530.00115
ORF1ab/nsp31261P1261LcCacTa44AY.780.006163
ORF1ab/nsp31261P1261SCcaTca44AY.99.20.000369
ORF1ab/nsp31261P1261SCcaTca44B.1.1.1530.004381
ORF1ab/nsp31261P1261LcCacTa44B.1.177.850.021739
ORF1ab/nsp31261P1261SCcaTca44B.1.214.30.028571
ORF1ab/nsp31261P1261SCcaTca44B.1.36.290.002069
ORF1ab/nsp31261P1261LcCacTa34B.1.438.10.000322
ORF1ab/nsp31261P1261LCCaTTa14B.1.438.10.000107
ORF1ab/nsp31261P1261SCcaTca44B.1.5250.000453
ORF1ab/nsp31261P1261PccAccG44B.1.5260.000094
ORF1ab/nsp31261P1261SCcaTca44B.1.5950.001044
ORF1ab/nsp31261P1261QcCacAa44B.1.6090.001918
ORF1ab/nsp31261P1261LcCacTa44B.1.6210.000354
ORF1ab/nsp31261P1261PccAccG44B.280.013115
ORF1ab/nsp31261P1261LcCacTa44N.40.017021
ORF1ab/nsp31261P1261PccAccT44P.10.000063
ORF1ab/nsp31261P1261delCCA---44P.1.140.000191
ORF1ab/nsp31261P1261SCcaTca44P.20.000747
ORF1ab/nsp31261P1261SCcaTca44Q.10.000505
ORF1ab/nsp31261P1261SCcaTca33A.2.50.001497
ORF1ab/nsp31261P1261SCcaTca33AE.80.001467
ORF1ab/nsp31261P1261SCcaTca33AY.1190.000106
ORF1ab/nsp31261P1261LcCacTa33AY.1200.000112
ORF1ab/nsp31261P1261SCcaTca33AY.270.000194
ORF1ab/nsp31261P1261LcCacTa33AY.30.00003
ORF1ab/nsp31261P1261SCcaTca33AY.3.10.000256
ORF1ab/nsp31261P1261LcCacTa33AY.330.0002
ORF1ab/nsp31261P1261LcCacTa33AY.39.10.000119
ORF1ab/nsp31261P1261delCCA---33AY.40.000005
ORF1ab/nsp31261P1261SCcaTca33AY.4.2.10.000447
ORF1ab/nsp31261P1261SCcaTca33AY.420.000121
ORF1ab/nsp31261P1261PccAccT23AY.430.000009
ORF1ab/nsp31261P1261PccAccG13AY.430.000004
ORF1ab/nsp31261P1261SCcaTca33AY.46.40.000494
ORF1ab/nsp31261P1261LcCacTa33AY.46.60.000217
ORF1ab/nsp31261P1261TCcaAca33AY.470.000093
ORF1ab/nsp31261P1261LcCacTa33AY.5.30.001012
ORF1ab/nsp31261P1261SCcaTca33AY.5.30.001012
ORF1ab/nsp31261P1261SCcaTca33AY.870.002498
ORF1ab/nsp31261P1261SCcaTca33AY.90.000203
ORF1ab/nsp31261P1261LcCacTa33AY.950.002283
ORF1ab/nsp31261P1261SCcaTca33AY.98.10.000145
ORF1ab/nsp31261P1261LcCacTa33AY.99.20.000276
ORF1ab/nsp31261P1261PccAccG33B.10.000027
ORF1ab/nsp31261P1261SCcaTca33B.1.1.1410.006036
ORF1ab/nsp31261P1261RcCacGa33B.1.1.2770.002276
ORF1ab/nsp31261P1261SCcaTca33B.1.1.370.000579
ORF1ab/nsp31261P1261RcCacGa33B.1.1.70.000003
ORF1ab/nsp31261P1261SCcaTca33B.1.1600.000094
ORF1ab/nsp31261P1261SCcaTca33B.1.2580.0002
ORF1ab/nsp31261P1261SCcaTca33B.1.4040.003906
ORF1ab/nsp31261P1261SCcaTca33B.1.4680.017143
ORF1ab/nsp31261P1261SCcaTca33B.1.5170.001281
ORF1ab/nsp31261P1261LcCacTa33B.1.5260.000071
ORF1ab/nsp31261P1261LcCacTa33B.1.5510.003871
ORF1ab/nsp31261P1261LcCacTa33B.1.5800.012195
ORF1ab/nsp31261P1261PccAccG33B.1.621.10.001517
ORF1ab/nsp31261P1261SCcaTca33B.400.001093
ORF1ab/nsp31261P1261SCcaTca33C.370.000348
ORF1ab/nsp31261P1261LcCacTa33Q.10.000379
ORF1ab/nsp31261P1261LcCacTa33Q.80.000495
ORF1ab/nsp31261P1261TCcaAca120.055556
ORF1ab/nsp31261P1261PccAccC120.055556
ORF1ab/nsp31261P1261PccAccT120.055556
ORF1ab/nsp31261P1261TCcAAcT120.055556
ORF1ab/nsp31261P1261SCcaTca22A.210.00554
ORF1ab/nsp31261P1261KCCaAAa22All0
ORF1ab/nsp31261P1261del1ccAcc-12All0
ORF1ab/nsp31261P1261del1Cca-ca12All0
ORF1ab/nsp31261P1261LcCacTa22AY.1060.00067
ORF1ab/nsp31261P1261SCcaTca22AY.1060.00067
ORF1ab/nsp31261P1261LcCacTa22AY.1070.000932
ORF1ab/nsp31261P1261PccAccT12AY.1210.000135
ORF1ab/nsp31261P1261PccAccG12AY.1210.000135
ORF1ab/nsp31261P1261PccAccG12AY.250.000006
ORF1ab/nsp31261P1261PccAccC12AY.250.000006
ORF1ab/nsp31261P1261LcCacTa22AY.260.000057
ORF1ab/nsp31261P1261PccAccG22AY.260.000057
ORF1ab/nsp31261P1261TCcaAca22AY.290.000032
ORF1ab/nsp31261P1261TCcaAca22AY.30.00002
ORF1ab/nsp31261P1261PccAccT22AY.30.00002
ORF1ab/nsp31261P1261LcCacTa22AY.300.000791
ORF1ab/nsp31261P1261PccAccT22AY.300.000791
ORF1ab/nsp31261P1261LcCacTa22AY.390.000049
ORF1ab/nsp31261P1261TCcaAca22AY.40.000003
ORF1ab/nsp31261P1261LcCacTa22AY.420.00008
ORF1ab/nsp31261P1261QcCacAa22AY.430.000009
ORF1ab/nsp31261P1261PccAccG22AY.440.000012
ORF1ab/nsp31261P1261LcCacTa22AY.450.000243
ORF1ab/nsp31261P1261SCcaTca22AY.46.60.000144
ORF1ab/nsp31261P1261LcCacTa22AY.60.000082
ORF1ab/nsp31261P1261SCcaTca22AY.620.000871
ORF1ab/nsp31261P1261LcCacTa22AY.750.000112
ORF1ab/nsp31261P1261LcCacTa22AY.75.10.000361
ORF1ab/nsp31261P1261SCcaTca22AY.840.000875
ORF1ab/nsp31261P1261LcCacTa22AY.870.001665
ORF1ab/nsp31261P1261SCcaTca22AY.9.10.000167
ORF1ab/nsp31261P1261LcCacTa22AY.9.20.000073
ORF1ab/nsp31261P1261SCcaTca22AY.980.000158
ORF1ab/nsp31261P1261TCcaAca22B.10.000018
ORF1ab/nsp31261P1261RcCacGa22B.10.000018
ORF1ab/nsp31261P1261delCCA---22B.10.000018
ORF1ab/nsp31261P1261SCcaTca22B.1.1.10.000653
ORF1ab/nsp31261P1261QcCacAa22B.1.1.2070.002364
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2140.000111
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2220.000408
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2840.000215
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2860.005797
ORF1ab/nsp31261P1261SCcaTca22B.1.1.4090.005666
ORF1ab/nsp31261P1261SCcaTca22B.1.177.210.000153
ORF1ab/nsp31261P1261LcCacTa22B.1.177.790.004684
ORF1ab/nsp31261P1261del1ccAcc-12B.1.20.000009
ORF1ab/nsp31261P1261del1Cca-ca12B.1.20.000009
ORF1ab/nsp31261P1261SCcaTca22B.1.2210.000142
ORF1ab/nsp31261P1261SCcaTca22B.1.2340.000264
ORF1ab/nsp31261P1261LcCacTa22B.1.243.20.028986
ORF1ab/nsp31261P1261SCcaTca22B.1.3190.006098
ORF1ab/nsp31261P1261LcCacTa22B.1.3510.000059
ORF1ab/nsp31261P1261SCcaTca22B.1.3560.003454
ORF1ab/nsp31261P1261PccAccG22B.1.360.000292
ORF1ab/nsp31261P1261PccAccG22B.1.36.170.000988
ORF1ab/nsp31261P1261SCcaTca22B.1.36.180.00084
ORF1ab/nsp31261P1261QcCacAa22B.1.4290.000047
ORF1ab/nsp31261P1261SCcaTca22B.1.5610.000794
ORF1ab/nsp31261P1261PccAccG22B.1.6000.011696
ORF1ab/nsp31261P1261QcCacAa22B.1.617.20.000008
ORF1ab/nsp31261P1261SCcaTca22B.1.619.10.001283
ORF1ab/nsp31261P1261SCcaTca22B.1.6280.000705
ORF1ab/nsp31261P1261SCcaTca22D.20.00015
ORF1ab/nsp31261P1261TCcaAca22P.10.000032
ORF1ab/nsp31261P1261SCcaTca22P.1.100.000539
ORF1ab/nsp31261P1261LcCacTa22R.10.00018
ORF1ab/nsp31261P1261KCCaAAa110.055556
ORF1ab/nsp31261P1261QcCacAa110.055556
ORF1ab/nsp31261P1261HcCAcAT110.055556
ORF1ab/nsp31261P1261NCCAAAT110.055556
ORF1ab/nsp31261P1261RcCacGa11A0.000387
ORF1ab/nsp31261P1261SCcaTca11A.20.000662
ORF1ab/nsp31261P1261LcCacTa11AE.50.018519
ORF1ab/nsp31261P1261NCCAAAT11All0
ORF1ab/nsp31261P1261GCCaGGa11All0
ORF1ab/nsp31261P1261ACcaGca11All0
ORF1ab/nsp31261P1261HcCAcAT11All0
ORF1ab/nsp31261P1261SCcaTca11AY.10.000396
ORF1ab/nsp31261P1261LcCacTa11AY.1000.000046
ORF1ab/nsp31261P1261LcCacTa11AY.1010.00049
ORF1ab/nsp31261P1261QcCacAa11AY.1020.000027
ORF1ab/nsp31261P1261PccAccG11AY.1130.000142
ORF1ab/nsp31261P1261SCcaTca11AY.116.10.000311
ORF1ab/nsp31261P1261LcCacTa11AY.1180.000063
ORF1ab/nsp31261P1261QcCacAa11AY.1190.000035
ORF1ab/nsp31261P1261SCcaTca11AY.120.000316
ORF1ab/nsp31261P1261TCcaAca11AY.1200.000037
ORF1ab/nsp31261P1261SCcaTca11AY.1210.000135
ORF1ab/nsp31261P1261SCcaTca11AY.130.000161
ORF1ab/nsp31261P1261PccAccT11AY.130.000161
ORF1ab/nsp31261P1261LcCacTa11AY.140.000088
ORF1ab/nsp31261P1261SCcaTca11AY.190.00114
ORF1ab/nsp31261P1261PccAccT11AY.200.000039
ORF1ab/nsp31261P1261QcCacAa11AY.230.00007
ORF1ab/nsp31261P1261PccAccC11AY.230.00007
ORF1ab/nsp31261P1261SCcaTca11AY.240.000431
ORF1ab/nsp31261P1261delCCA---11AY.250.000006
ORF1ab/nsp31261P1261QcCacAa11AY.270.000065
ORF1ab/nsp31261P1261SCcaTca11AY.29.10.000221
ORF1ab/nsp31261P1261delCCA---11AY.30.00001
ORF1ab/nsp31261P1261SCcaTca11AY.320.000532
ORF1ab/nsp31261P1261RcCacGa11AY.330.000067
ORF1ab/nsp31261P1261PccAccG11AY.360.000148
ORF1ab/nsp31261P1261LcCacTa11AY.360.000148
ORF1ab/nsp31261P1261QcCacAa11AY.39.10.00004
ORF1ab/nsp31261P1261QcCacAa11AY.40.000002
ORF1ab/nsp31261P1261TCcaAca11AY.4.2.10.000149
ORF1ab/nsp31261P1261SCcaTca11AY.4.30.000842
ORF1ab/nsp31261P1261delCCA---11AY.4.50.000107
ORF1ab/nsp31261P1261LcCacTa11AY.4.50.000107
ORF1ab/nsp31261P1261PccAccT11AY.400.000964
ORF1ab/nsp31261P1261delCCA---11AY.430.000004
ORF1ab/nsp31261P1261TCcAAcC11AY.440.000006
ORF1ab/nsp31261P1261SCcaTca11AY.46.10.001027
ORF1ab/nsp31261P1261LcCacTa11AY.5.40.000277
ORF1ab/nsp31261P1261SCcaTca11AY.5.40.000277
ORF1ab/nsp31261P1261SCcaTca11AY.500.000799
ORF1ab/nsp31261P1261LcCacTa11AY.520.000814
ORF1ab/nsp31261P1261SCcaTca11AY.540.000095
ORF1ab/nsp31261P1261LcCacTa11AY.540.000095
ORF1ab/nsp31261P1261SCcaTca11AY.550.000917
ORF1ab/nsp31261P1261LcCacTa11AY.590.00053
ORF1ab/nsp31261P1261PccAccG11AY.60.000041
ORF1ab/nsp31261P1261SCcaTca11AY.60.000041
ORF1ab/nsp31261P1261LcCacTa11AY.610.000105
ORF1ab/nsp31261P1261LcCacTa11AY.620.000436
ORF1ab/nsp31261P1261PccAccT11AY.620.000436
ORF1ab/nsp31261P1261delCCA---11AY.660.00107
ORF1ab/nsp31261P1261LcCacTa11AY.720.001361
ORF1ab/nsp31261P1261delCCA---11AY.720.001361
ORF1ab/nsp31261P1261PccAccG11AY.740.000116
ORF1ab/nsp31261P1261LcCacTa11AY.740.000116
ORF1ab/nsp31261P1261TCcaAca11AY.750.000056
ORF1ab/nsp31261P1261SCcaTca11AY.75.10.00018
ORF1ab/nsp31261P1261LcCacTa11AY.790.001211
ORF1ab/nsp31261P1261LcCacTa11AY.850.000427
ORF1ab/nsp31261P1261SCcaTca11AY.850.000427
ORF1ab/nsp31261P1261PccAccC11AY.9.20.000037
ORF1ab/nsp31261P1261SCcaTca11AY.9.20.000037
ORF1ab/nsp31261P1261LcCacTa11AY.900.000684
ORF1ab/nsp31261P1261LcCacTa11AY.920.000287
ORF1ab/nsp31261P1261LcCacTa11AY.960.002075
ORF1ab/nsp31261P1261LcCacTa11AY.980.000079
ORF1ab/nsp31261P1261PccAccC11AY.980.000079
ORF1ab/nsp31261P1261LcCacTa11AY.98.10.000048
ORF1ab/nsp31261P1261QcCacAa11B.10.000009
ORF1ab/nsp31261P1261QcCacAa11B.1.10.000018
ORF1ab/nsp31261P1261delCCA---11B.1.10.000018
ORF1ab/nsp31261P1261KCCaAAa11B.1.10.000018
ORF1ab/nsp31261P1261LcCacTa11B.1.1.10.000327
ORF1ab/nsp31261P1261SCcaTca11B.1.1.100.001115
ORF1ab/nsp31261P1261delCCA---11B.1.1.1330.008475
ORF1ab/nsp31261P1261SCcaTca11B.1.1.1420.017544
ORF1ab/nsp31261P1261LcCacTa11B.1.1.2220.000204
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2430.004082
ORF1ab/nsp31261P1261LcCacTa11B.1.1.2550.00303
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2650.003155
ORF1ab/nsp31261P1261LcCacTa11B.1.1.2690.001353
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2770.000759
ORF1ab/nsp31261P1261SCcaTca11B.1.1.280.000311
ORF1ab/nsp31261P1261PccAccG11B.1.1.280.000311
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3060.000438
ORF1ab/nsp31261P1261LcCacTa11B.1.1.3060.000438
ORF1ab/nsp31261P1261QcCacAa11B.1.1.3170.000412
ORF1ab/nsp31261P1261SCcaTca11B.1.1.330.000421
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3480.000796
ORF1ab/nsp31261P1261delCCA---11B.1.1.3480.000796
ORF1ab/nsp31261P1261PccAccG11B.1.1.370.000193
ORF1ab/nsp31261P1261LcCacTa11B.1.1.3890.006061
ORF1ab/nsp31261P1261SCcaTca11B.1.1.390.00051
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3970.002252
ORF1ab/nsp31261P1261TCcaAca11B.1.1.4090.002833
ORF1ab/nsp31261P1261delCCA---11B.1.1.4090.002833
ORF1ab/nsp31261P1261SCcaTca11B.1.1.4200.001006
ORF1ab/nsp31261P1261LcCacTa11B.1.1.4200.001006
ORF1ab/nsp31261P1261LcCacTa11B.1.1.4340.000349
ORF1ab/nsp31261P1261SCcaTca11B.1.1.440.00241
ORF1ab/nsp31261P1261LcCacTa11B.1.1.4640.001473
ORF1ab/nsp31261P1261LcCacTa11B.1.1.4870.005587
ORF1ab/nsp31261P1261LcCacTa11B.1.1.5240.020833
ORF1ab/nsp31261P1261QcCacAa11B.1.1.70.000001
ORF1ab/nsp31261P1261TCcaAca11B.1.1.70.000001
ORF1ab/nsp31261P1261SCcaTca11B.1.1.700.000341
ORF1ab/nsp31261P1261LcCacTa11B.1.1.80.003584
ORF1ab/nsp31261P1261LcCacTa11B.1.110.30.000718
ORF1ab/nsp31261P1261LcCacTa11B.1.1110.001175
ORF1ab/nsp31261P1261SCcaTca11B.1.1260.001276
ORF1ab/nsp31261P1261LcCacTa11B.1.1260.001276
ORF1ab/nsp31261P1261SCcaTca11B.1.160.320.004292
ORF1ab/nsp31261P1261delCCA---11B.1.1770.000013
ORF1ab/nsp31261P1261PccAccG11B.1.1770.000013
ORF1ab/nsp31261P1261delCCA---11B.1.177.160.000664
ORF1ab/nsp31261P1261QcCacAa11B.1.177.170.000821
ORF1ab/nsp31261P1261delCCA---11B.1.177.510.004566
ORF1ab/nsp31261P1261LcCacTa11B.1.177.530.002392
ORF1ab/nsp31261P1261SCcaTca11B.1.177.550.002331
ORF1ab/nsp31261P1261LcCacTa11B.1.177.60.000977
ORF1ab/nsp31261P1261LcCacTa11B.1.177.730.000566
ORF1ab/nsp31261P1261SCcaTca11B.1.177.730.000566
ORF1ab/nsp31261P1261GCCaGGa11B.1.177.730.000566
ORF1ab/nsp31261P1261SCcaTca11B.1.177.770.000726
ORF1ab/nsp31261P1261delCCA---11B.1.177.830.001481
ORF1ab/nsp31261P1261LcCacTa11B.1.1950.005025
ORF1ab/nsp31261P1261SCcaTca11B.1.2100.002132
ORF1ab/nsp31261P1261LcCacTa11B.1.214.30.007143
ORF1ab/nsp31261P1261PccAccC11B.1.2210.000071
ORF1ab/nsp31261P1261LcCacTa11B.1.2210.000071
ORF1ab/nsp31261P1261SCcaTca11B.1.2320.000537
ORF1ab/nsp31261P1261SCcaTca11B.1.2330.014085
ORF1ab/nsp31261P1261SCcaTca11B.1.2390.001221
ORF1ab/nsp31261P1261PccAccT11B.1.2400.000216
ORF1ab/nsp31261P1261QcCacAa11B.1.2430.00007
ORF1ab/nsp31261P1261LcCacTa11B.1.2580.000067
ORF1ab/nsp31261P1261SCcaTca11B.1.258.110.000396
ORF1ab/nsp31261P1261LcCacTa11B.1.2600.003344
ORF1ab/nsp31261P1261SCcaTca11B.1.2680.010417
ORF1ab/nsp31261P1261LcCacTa11B.1.2790.000514
ORF1ab/nsp31261P1261SCcaTca11B.1.2800.007143
ORF1ab/nsp31261P1261PccAccT11B.1.3110.000275
ORF1ab/nsp31261P1261SCcaTca11B.1.3200.001245
ORF1ab/nsp31261P1261SCcaTca11B.1.3250.006897
ORF1ab/nsp31261P1261PccAccG11B.1.3260.007576
ORF1ab/nsp31261P1261LcCacTa11B.1.3360.002439
ORF1ab/nsp31261P1261LcCacTa11B.1.3490.000715
ORF1ab/nsp31261P1261LcCacTa11B.1.36.160.001425
ORF1ab/nsp31261P1261SCcaTca11B.1.36.260.002857
ORF1ab/nsp31261P1261SCcaTca11B.1.36.380.001642
ORF1ab/nsp31261P1261SCcaTca11B.1.36.390.002217
ORF1ab/nsp31261P1261LcCacTa11B.1.36.390.002217
ORF1ab/nsp31261P1261LcCacTa11B.1.3690.000285
ORF1ab/nsp31261P1261LcCacTa11B.1.3910.001127
ORF1ab/nsp31261P1261SCcaTca11B.1.3960.000706
ORF1ab/nsp31261P1261LcCacTa11B.1.4000.000429
ORF1ab/nsp31261P1261SCcaTca11B.1.400.10.015152
ORF1ab/nsp31261P1261SCcaTca11B.1.4110.003704
ORF1ab/nsp31261P1261TCcaAca11B.1.4110.003704
ORF1ab/nsp31261P1261SCcaTca11B.1.4240.008065
ORF1ab/nsp31261P1261SCcaTca11B.1.4410.009615
ORF1ab/nsp31261P1261SCcaTca11B.1.4560.003268
ORF1ab/nsp31261P1261LcCacTa11B.1.466.20.000391
ORF1ab/nsp31261P1261PccAccT11B.1.5250.000113
ORF1ab/nsp31261P1261TCcaAca11B.1.5330.009615
ORF1ab/nsp31261P1261SCcaTca11B.1.5480.035714
ORF1ab/nsp31261P1261SCcaTca11B.1.5510.00129
ORF1ab/nsp31261P1261SCcaTca11B.1.5680.001111
ORF1ab/nsp31261P1261LcCacTa11B.1.5950.000261
ORF1ab/nsp31261P1261LcCacTa11B.1.6090.000479
ORF1ab/nsp31261P1261SCcaTca11B.1.6100.003546
ORF1ab/nsp31261P1261delCCA---11B.1.617.20.000004
ORF1ab/nsp31261P1261TCcaAca11B.1.617.20.000004
ORF1ab/nsp31261P1261SCcaTca11B.1.6190.000871
ORF1ab/nsp31261P1261PccAccG11B.1.6190.000871
ORF1ab/nsp31261P1261TCcaAca11B.1.6210.000089
ORF1ab/nsp31261P1261LcCacTa11B.1.6250.002353
ORF1ab/nsp31261P1261TCcaAca11B.1.6280.000352
ORF1ab/nsp31261P1261delCCA---11B.1.6300.005236
ORF1ab/nsp31261P1261SCcaTca11B.60.00091
ORF1ab/nsp31261P1261SCcaTca11C.160.00106
ORF1ab/nsp31261P1261ACcaGca11C.350.000774
ORF1ab/nsp31261P1261SCcaTca11C.360.000911
ORF1ab/nsp31261P1261SCcaTca11C.36.30.000567
ORF1ab/nsp31261P1261LcCacTa11C.370.000116
ORF1ab/nsp31261P1261SCcaTca11C.40.01
ORF1ab/nsp31261P1261LcCacTa11P.1.100.000269
ORF1ab/nsp31261P1261SCcaTca11P.1.120.000484
ORF1ab/nsp31261P1261LcCacTa11P.1.140.000048
ORF1ab/nsp31261P1261LcCacTa11P.1.170.000162
ORF1ab/nsp31261P1261SCcaTca11P.1.170.000162
ORF1ab/nsp31261P1261PccAccG11P.1.20.001156
ORF1ab/nsp31261P1261PccAccG11Q.10.000126