CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1259 | L1259L | L2077L | syn | ctT | ctC | 955 | 942 | 0.986387 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259L | L2077L | syn | ctT | ctA | 955 | 12 | 0.0125654 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259L | L2077L | syn | ctT | ctG | 955 | 1 | 0.00104712 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259F | L2077F | nonsyn | Ctt | Ttt | 697 | 697 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259I | L2077I | nonsyn | Ctt | Att | 160 | 160 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259P | L2077P | nonsyn | cTT | cCA | 100 | 68 | 0.68 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259P | L2077P | nonsyn | cTt | cCt | 100 | 32 | 0.32 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259H | L2077H | nonsyn | cTt | cAt | 33 | 33 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259del | L2077del | del | CTT | --- | 30 | 30 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259R | L2077R | nonsyn | cTt | cGt | 20 | 18 | 0.9 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259R | L2077R | nonsyn | cTT | cGG | 20 | 1 | 0.05 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259R | L2077R | nonsyn | CTT | AGG | 20 | 1 | 0.05 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259S | L2077S | nonsyn | CTt | AGt | 3 | 2 | 0.666667 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259S | L2077S | nonsyn | CTt | TCt | 3 | 1 | 0.333333 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259T | L2077T | nonsyn | CTt | ACt | 2 | 2 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259Y | L2077Y | nonsyn | CTt | TAt | 2 | 2 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259del2 | L2077del2 | del | CTt | --t | 2 | 1 | 0.5 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259del1 | L2077del1 | del | ctT | ct- | 2 | 1 | 0.5 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259del1 | L2077del1 | del | Ctt | -tt | 2 | 1 | 0.5 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259del2 | L2077del2 | del | cTT | c-- | 2 | 1 | 0.5 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259N | L2077N | nonsyn | CTt | AAt | 1 | 1 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259M | L2077M | nonsyn | CtT | AtG | 1 | 1 | 1 | 6494-6496 |
ORF1ab/nsp3 | 1259 | L1259V | L2077V | nonsyn | Ctt | Gtt | 1 | 1 | 1 | 6494-6496 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 942 | 955 | All | 0.00018 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 12 | 955 | All | 0.000002 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctG | 1 | 955 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 851 | 851 | AY.66 | 0.91016 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 697 | 697 | All | 0.000133 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 160 | 160 | All | 0.000031 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 138 | 138 | AY.29 | 0.002177 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 116 | 116 | AY.4 | 0.000181 |
ORF1ab/nsp3 | 1259 | L1259P | cTT | cCA | 68 | 100 | All | 0.000013 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 32 | 100 | All | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 97 | 97 | B.1.1.7 | 0.000087 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 82 | 82 | B.1.1.7 | 0.000073 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 44 | 44 | B.1 | 0.000403 |
ORF1ab/nsp3 | 1259 | L1259P | cTT | cCA | 40 | 40 | AY.66 | 0.042781 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 39 | 39 | B.1.582 | 0.019136 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 33 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259P | cTT | cCA | 28 | 31 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 3 | 31 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 18 | 20 | All | 0.000003 |
ORF1ab/nsp3 | 1259 | L1259R | CTT | AGG | 1 | 20 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259R | cTT | cGG | 1 | 20 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 17 | 17 | B.1.574 | 0.036559 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 12 | 12 | AY.54 | 0.001144 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 6 | 6 | B.1.245 | 0.1875 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 5 | 5 | B.1.453 | 0.016181 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1259 | L1259R | CTT | AGG | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259R | cTT | cGG | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1259 | L1259S | CTt | AGt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259S | CTt | TCt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | B.1.36.33 | 0.022727 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp3 | 1259 | L1259S | CTt | AGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1259 | L1259Y | CTt | TAt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259T | CTt | ACt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259del2 | cTT | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259del2 | CTt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259del1 | ctT | ct- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259del1 | Ctt | -tt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.1.129 | 0.018349 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259T | CTt | ACt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259M | CtT | AtG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259N | CTt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259Y | CTt | TAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1259 | L1259V | Ctt | Gtt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259M | CtT | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259N | CTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1259 | L1259V | Ctt | Gtt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1259 | L1259S | CTt | TCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259del2 | cTT | c-- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1259 | L1259del1 | ctT | ct- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1259 | L1259del2 | CTt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1259 | L1259del1 | Ctt | -tt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1259 | L1259T | CTt | ACt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1259 | L1259P | cTt | cCt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1259 | L1259R | cTt | cGt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.434 | 0.052632 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1259 | L1259I | Ctt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1259 | L1259del | CTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1259 | L1259L | ctT | ctC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1259 | L1259Y | CTt | TAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1259 | L1259H | cTt | cAt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1259 | L1259F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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