CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1259

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31259L1259LL2077LsynctTctC9559420.9863876494-6496
ORF1ab/nsp31259L1259LL2077LsynctTctA955120.01256546494-6496
ORF1ab/nsp31259L1259LL2077LsynctTctG95510.001047126494-6496
ORF1ab/nsp31259L1259FL2077FnonsynCttTtt69769716494-6496
ORF1ab/nsp31259L1259IL2077InonsynCttAtt16016016494-6496
ORF1ab/nsp31259L1259PL2077PnonsyncTTcCA100680.686494-6496
ORF1ab/nsp31259L1259PL2077PnonsyncTtcCt100320.326494-6496
ORF1ab/nsp31259L1259HL2077HnonsyncTtcAt333316494-6496
ORF1ab/nsp31259L1259delL2077deldelCTT---303016494-6496
ORF1ab/nsp31259L1259RL2077RnonsyncTtcGt20180.96494-6496
ORF1ab/nsp31259L1259RL2077RnonsyncTTcGG2010.056494-6496
ORF1ab/nsp31259L1259RL2077RnonsynCTTAGG2010.056494-6496
ORF1ab/nsp31259L1259SL2077SnonsynCTtAGt320.6666676494-6496
ORF1ab/nsp31259L1259SL2077SnonsynCTtTCt310.3333336494-6496
ORF1ab/nsp31259L1259TL2077TnonsynCTtACt2216494-6496
ORF1ab/nsp31259L1259YL2077YnonsynCTtTAt2216494-6496
ORF1ab/nsp31259L1259del2L2077del2delCTt--t210.56494-6496
ORF1ab/nsp31259L1259del1L2077del1delctTct-210.56494-6496
ORF1ab/nsp31259L1259del1L2077del1delCtt-tt210.56494-6496
ORF1ab/nsp31259L1259del2L2077del2delcTTc--210.56494-6496
ORF1ab/nsp31259L1259NL2077NnonsynCTtAAt1116494-6496
ORF1ab/nsp31259L1259ML2077MnonsynCtTAtG1116494-6496
ORF1ab/nsp31259L1259VL2077VnonsynCttGtt1116494-6496

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31259L1259LctTctC942955All0.00018
ORF1ab/nsp31259L1259LctTctA12955All0.000002
ORF1ab/nsp31259L1259LctTctG1955All0
ORF1ab/nsp31259L1259LctTctC851851AY.660.91016
ORF1ab/nsp31259L1259FCttTtt697697All0.000133
ORF1ab/nsp31259L1259ICttAtt160160All0.000031
ORF1ab/nsp31259L1259FCttTtt138138AY.290.002177
ORF1ab/nsp31259L1259FCttTtt116116AY.40.000181
ORF1ab/nsp31259L1259PcTTcCA68100All0.000013
ORF1ab/nsp31259L1259PcTtcCt32100All0.000006
ORF1ab/nsp31259L1259FCttTtt9797B.1.1.70.000087
ORF1ab/nsp31259L1259ICttAtt8282B.1.1.70.000073
ORF1ab/nsp31259L1259FCttTtt4444B.10.000403
ORF1ab/nsp31259L1259PcTTcCA4040AY.660.042781
ORF1ab/nsp31259L1259FCttTtt3939B.1.5820.019136
ORF1ab/nsp31259L1259LctTctC3838B.1.1.70.000034
ORF1ab/nsp31259L1259FCttTtt3838B.1.617.20.000143
ORF1ab/nsp31259L1259HcTtcAt3333All0.000006
ORF1ab/nsp31259L1259PcTTcCA2831B.1.617.20.000105
ORF1ab/nsp31259L1259PcTtcCt331B.1.617.20.000011
ORF1ab/nsp31259L1259delCTT---3030All0.000006
ORF1ab/nsp31259L1259FCttTtt2828AY.250.000168
ORF1ab/nsp31259L1259HcTtcAt2727B.1.1.70.000024
ORF1ab/nsp31259L1259FCttTtt2323B.1.20.000203
ORF1ab/nsp31259L1259ICttAtt2323B.1.617.20.000087
ORF1ab/nsp31259L1259RcTtcGt1820All0.000003
ORF1ab/nsp31259L1259RCTTAGG120All0
ORF1ab/nsp31259L1259RcTTcGG120All0
ORF1ab/nsp31259L1259PcTtcCt1818B.10.000165
ORF1ab/nsp31259L1259FCttTtt1717B.1.5740.036559
ORF1ab/nsp31259L1259LctTctC1212AY.540.001144
ORF1ab/nsp31259L1259ICttAtt1111AY.430.000049
ORF1ab/nsp31259L1259FCttTtt1111B.1.10.0002
ORF1ab/nsp31259L1259RcTtcGt1010B.1.1.70.000009
ORF1ab/nsp31259L1259FCttTtt88AY.50.000165
ORF1ab/nsp31259L1259FCttTtt77AY.440.000043
ORF1ab/nsp31259L1259ICttAtt77AY.440.000043
ORF1ab/nsp31259L1259delCTT---66B.1.1.70.000005
ORF1ab/nsp31259L1259ICttAtt66B.1.1770.000079
ORF1ab/nsp31259L1259ICttAtt66B.1.2450.1875
ORF1ab/nsp31259L1259FCttTtt66B.1.5960.000523
ORF1ab/nsp31259L1259FCttTtt55AY.1190.000177
ORF1ab/nsp31259L1259FCttTtt55AY.39.10.000198
ORF1ab/nsp31259L1259LctTctC55AY.40.000008
ORF1ab/nsp31259L1259FCttTtt55AY.430.000022
ORF1ab/nsp31259L1259LctTctC55B.1.4530.016181
ORF1ab/nsp31259L1259LctTctC55B.1.617.20.000019
ORF1ab/nsp31259L1259FCttTtt55P.1.170.000809
ORF1ab/nsp31259L1259ICttAtt440.222222
ORF1ab/nsp31259L1259RcTtcGt240.111111
ORF1ab/nsp31259L1259RCTTAGG140.055556
ORF1ab/nsp31259L1259RcTTcGG140.055556
ORF1ab/nsp31259L1259FCttTtt44AY.1030.000025
ORF1ab/nsp31259L1259FCttTtt44AY.30.00004
ORF1ab/nsp31259L1259LctTctC44AY.430.000018
ORF1ab/nsp31259L1259LctTctC24B.1.10.000036
ORF1ab/nsp31259L1259LctTctA24B.1.10.000036
ORF1ab/nsp31259L1259FCttTtt44B.1.5260.000094
ORF1ab/nsp31259L1259FCttTtt44P.1.10.001271
ORF1ab/nsp31259L1259delCTT---44P.1.140.000191
ORF1ab/nsp31259L1259SCTtAGt23All0
ORF1ab/nsp31259L1259SCTtTCt13All0
ORF1ab/nsp31259L1259LctTctC33AY.130.000483
ORF1ab/nsp31259L1259RcTtcGt33AY.200.000117
ORF1ab/nsp31259L1259FCttTtt33AY.230.000209
ORF1ab/nsp31259L1259LctTctC33AY.30.00003
ORF1ab/nsp31259L1259delCTT---33AY.40.000005
ORF1ab/nsp31259L1259PcTtcCt33AY.4.20.000065
ORF1ab/nsp31259L1259FCttTtt33AY.46.50.000595
ORF1ab/nsp31259L1259FCttTtt33AY.46.60.000217
ORF1ab/nsp31259L1259ICttAtt33B.10.000027
ORF1ab/nsp31259L1259FCttTtt33B.1.1.5190.000119
ORF1ab/nsp31259L1259FCttTtt33B.1.177.570.000843
ORF1ab/nsp31259L1259FCttTtt33B.1.36.330.022727
ORF1ab/nsp31259L1259FCttTtt33B.1.5640.001278
ORF1ab/nsp31259L1259FCttTtt33B.1.5950.000783
ORF1ab/nsp31259L1259FCttTtt33P.10.000047
ORF1ab/nsp31259L1259FCttTtt33P.1.40.00293
ORF1ab/nsp31259L1259SCTtAGt220.111111
ORF1ab/nsp31259L1259HcTtcAt220.111111
ORF1ab/nsp31259L1259YCTtTAt22All0
ORF1ab/nsp31259L1259TCTtACt22All0
ORF1ab/nsp31259L1259del2cTTc--12All0
ORF1ab/nsp31259L1259del2CTt--t12All0
ORF1ab/nsp31259L1259del1ctTct-12All0
ORF1ab/nsp31259L1259del1Ctt-tt12All0
ORF1ab/nsp31259L1259ICttAtt22AY.1020.000053
ORF1ab/nsp31259L1259RcTtcGt22AY.1080.002205
ORF1ab/nsp31259L1259FCttTtt22AY.1130.000285
ORF1ab/nsp31259L1259FCttTtt22AY.1170.000169
ORF1ab/nsp31259L1259FCttTtt22AY.29.10.000441
ORF1ab/nsp31259L1259ICttAtt22AY.450.000243
ORF1ab/nsp31259L1259FCttTtt22AY.460.000208
ORF1ab/nsp31259L1259delCTT---22AY.470.000062
ORF1ab/nsp31259L1259FCttTtt22AY.7.10.000225
ORF1ab/nsp31259L1259LctTctC12B.10.000009
ORF1ab/nsp31259L1259LctTctA12B.10.000009
ORF1ab/nsp31259L1259FCttTtt22B.1.1.1290.018349
ORF1ab/nsp31259L1259FCttTtt22B.1.1.5260.007092
ORF1ab/nsp31259L1259FCttTtt22B.1.1600.000062
ORF1ab/nsp31259L1259LctTctA22B.1.20.000018
ORF1ab/nsp31259L1259ICttAtt22B.1.2210.000142
ORF1ab/nsp31259L1259FCttTtt22B.1.360.000292
ORF1ab/nsp31259L1259FCttTtt22B.1.3960.001411
ORF1ab/nsp31259L1259FCttTtt22B.1.4290.000047
ORF1ab/nsp31259L1259FCttTtt22B.1.6120.005305
ORF1ab/nsp31259L1259LctTctA22D.20.00015
ORF1ab/nsp31259L1259FCttTtt22P.20.000373
ORF1ab/nsp31259L1259FCttTtt110.055556
ORF1ab/nsp31259L1259PcTtcCt110.055556
ORF1ab/nsp31259L1259TCTtACt110.055556
ORF1ab/nsp31259L1259MCtTAtG110.055556
ORF1ab/nsp31259L1259LctTctG110.055556
ORF1ab/nsp31259L1259NCTtAAt110.055556
ORF1ab/nsp31259L1259YCTtTAt110.055556
ORF1ab/nsp31259L1259LctTctA11A.2.20.001689
ORF1ab/nsp31259L1259PcTtcCt11A.210.00277
ORF1ab/nsp31259L1259VCttGtt11All0
ORF1ab/nsp31259L1259MCtTAtG11All0
ORF1ab/nsp31259L1259NCTtAAt11All0
ORF1ab/nsp31259L1259FCttTtt11AY.116.10.000311
ORF1ab/nsp31259L1259FCttTtt11AY.1180.000063
ORF1ab/nsp31259L1259ICttAtt11AY.1180.000063
ORF1ab/nsp31259L1259ICttAtt11AY.120.000316
ORF1ab/nsp31259L1259FCttTtt11AY.140.000088
ORF1ab/nsp31259L1259FCttTtt11AY.200.000039
ORF1ab/nsp31259L1259ICttAtt11AY.250.000006
ORF1ab/nsp31259L1259delCTT---11AY.250.000006
ORF1ab/nsp31259L1259PcTtcCt11AY.250.000006
ORF1ab/nsp31259L1259FCttTtt11AY.260.000028
ORF1ab/nsp31259L1259LctTctC11AY.260.000028
ORF1ab/nsp31259L1259VCttGtt11AY.290.000016
ORF1ab/nsp31259L1259delCTT---11AY.30.00001
ORF1ab/nsp31259L1259PcTtcCt11AY.30.00001
ORF1ab/nsp31259L1259FCttTtt11AY.3.10.000085
ORF1ab/nsp31259L1259LctTctA11AY.3.10.000085
ORF1ab/nsp31259L1259ICttAtt11AY.390.000025
ORF1ab/nsp31259L1259ICttAtt11AY.40.000002
ORF1ab/nsp31259L1259SCTtTCt11AY.40.000002
ORF1ab/nsp31259L1259LctTctC11AY.4.20.000022
ORF1ab/nsp31259L1259delCTT---11AY.4.50.000107
ORF1ab/nsp31259L1259FCttTtt11AY.420.00004
ORF1ab/nsp31259L1259HcTtcAt11AY.430.000004
ORF1ab/nsp31259L1259LctTctC11AY.440.000006
ORF1ab/nsp31259L1259FCttTtt11AY.470.000031
ORF1ab/nsp31259L1259LctTctC11AY.470.000031
ORF1ab/nsp31259L1259FCttTtt11AY.5.40.000277
ORF1ab/nsp31259L1259LctTctC11AY.530.000288
ORF1ab/nsp31259L1259FCttTtt11AY.540.000095
ORF1ab/nsp31259L1259FCttTtt11AY.590.00053
ORF1ab/nsp31259L1259delCTT---11AY.660.00107
ORF1ab/nsp31259L1259FCttTtt11AY.70.000196
ORF1ab/nsp31259L1259ICttAtt11AY.840.000437
ORF1ab/nsp31259L1259ICttAtt11AY.920.000287
ORF1ab/nsp31259L1259PcTtcCt11B0.000128
ORF1ab/nsp31259L1259delCTT---11B.10.000009
ORF1ab/nsp31259L1259del2cTTc--11B.10.000009
ORF1ab/nsp31259L1259HcTtcAt11B.10.000009
ORF1ab/nsp31259L1259ICttAtt11B.1.10.000018
ORF1ab/nsp31259L1259delCTT---11B.1.10.000018
ORF1ab/nsp31259L1259PcTtcCt11B.1.10.000018
ORF1ab/nsp31259L1259delCTT---11B.1.1.1330.008475
ORF1ab/nsp31259L1259FCttTtt11B.1.1.2160.00089
ORF1ab/nsp31259L1259FCttTtt11B.1.1.2840.000107
ORF1ab/nsp31259L1259del1ctTct-11B.1.1.3060.000438
ORF1ab/nsp31259L1259delCTT---11B.1.1.3480.000796
ORF1ab/nsp31259L1259delCTT---11B.1.1.4090.002833
ORF1ab/nsp31259L1259del2CTt--t11B.1.1.70.000001
ORF1ab/nsp31259L1259LctTctA11B.1.1600.000031
ORF1ab/nsp31259L1259delCTT---11B.1.1770.000013
ORF1ab/nsp31259L1259LctTctC11B.1.1770.000013
ORF1ab/nsp31259L1259FCttTtt11B.1.1770.000013
ORF1ab/nsp31259L1259FCttTtt11B.1.177.210.000076
ORF1ab/nsp31259L1259FCttTtt11B.1.177.40.000211
ORF1ab/nsp31259L1259LctTctA11B.1.177.440.000519
ORF1ab/nsp31259L1259delCTT---11B.1.177.510.004566
ORF1ab/nsp31259L1259del1Ctt-tt11B.1.177.620.001192
ORF1ab/nsp31259L1259delCTT---11B.1.177.830.001481
ORF1ab/nsp31259L1259PcTtcCt11B.1.20.000009
ORF1ab/nsp31259L1259ICttAtt11B.1.20.000009
ORF1ab/nsp31259L1259FCttTtt11B.1.2060.000816
ORF1ab/nsp31259L1259LctTctC11B.1.2140.003663
ORF1ab/nsp31259L1259TCTtACt11B.1.2210.000071
ORF1ab/nsp31259L1259PcTtcCt11B.1.2210.000071
ORF1ab/nsp31259L1259FCttTtt11B.1.2340.000132
ORF1ab/nsp31259L1259LctTctC11B.1.2580.000067
ORF1ab/nsp31259L1259FCttTtt11B.1.2840.013158
ORF1ab/nsp31259L1259FCttTtt11B.1.3510.00003
ORF1ab/nsp31259L1259RcTtcGt11B.1.36.160.001425
ORF1ab/nsp31259L1259LctTctC11B.1.4290.000024
ORF1ab/nsp31259L1259ICttAtt11B.1.4290.000024
ORF1ab/nsp31259L1259delCTT---11B.1.4340.052632
ORF1ab/nsp31259L1259FCttTtt11B.1.5650.00081
ORF1ab/nsp31259L1259LctTctC11B.1.5680.001111
ORF1ab/nsp31259L1259FCttTtt11B.1.5750.000303
ORF1ab/nsp31259L1259LctTctA11B.1.5760.000907
ORF1ab/nsp31259L1259LctTctC11B.1.5770.000687
ORF1ab/nsp31259L1259FCttTtt11B.1.5770.000687
ORF1ab/nsp31259L1259FCttTtt11B.1.5800.004065
ORF1ab/nsp31259L1259ICttAtt11B.1.5960.000087
ORF1ab/nsp31259L1259ICttAtt11B.1.617.10.000129
ORF1ab/nsp31259L1259delCTT---11B.1.617.20.000004
ORF1ab/nsp31259L1259LctTctC11B.1.619.10.000641
ORF1ab/nsp31259L1259FCttTtt11B.1.6210.000089
ORF1ab/nsp31259L1259FCttTtt11B.1.6230.000536
ORF1ab/nsp31259L1259delCTT---11B.1.6300.005236
ORF1ab/nsp31259L1259HcTtcAt11C.350.000774
ORF1ab/nsp31259L1259FCttTtt11C.370.000116
ORF1ab/nsp31259L1259LctTctC11C.370.000116
ORF1ab/nsp31259L1259FCttTtt11D.20.000075
ORF1ab/nsp31259L1259YCTtTAt11P.10.000016
ORF1ab/nsp31259L1259HcTtcAt11P.1.10.000318
ORF1ab/nsp31259L1259FCttTtt11P.1.120.000484
ORF1ab/nsp31259L1259FCttTtt11Q.40.000455
ORF1ab/nsp31259L1259FCttTtt11Q.80.000165