CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1257

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31257I1257delI2075deldelATT---55255216488-6490
ORF1ab/nsp31257I1257VI2075VnonsynAttGtt26426416488-6490
ORF1ab/nsp31257I1257TI2075TnonsynaTtaCt25025016488-6490
ORF1ab/nsp31257I1257II2075IsynatTatC40230.5756488-6490
ORF1ab/nsp31257I1257II2075IsynatTatA40170.4256488-6490
ORF1ab/nsp31257I1257MI2075MnonsynatTatG202016488-6490
ORF1ab/nsp31257I1257SI2075SnonsynaTtaGt18170.9444446488-6490
ORF1ab/nsp31257I1257SI2075SnonsynATtTCt1810.05555566488-6490
ORF1ab/nsp31257I1257LI2075LnonsynAttCtt171716488-6490
ORF1ab/nsp31257I1257FI2075FnonsynAttTtt161616488-6490
ORF1ab/nsp31257I1257NI2075NnonsynaTtaAt16150.93756488-6490
ORF1ab/nsp31257I1257NI2075NnonsynaTTaAC1610.06256488-6490
ORF1ab/nsp31257I1257del1I2075del1delaTta-t7716488-6490
ORF1ab/nsp31257I1257del2I2075del2delaTTa--2216488-6490
ORF1ab/nsp31257I1257YI2075YnonsynATtTAt1116488-6490

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31257I1257delATT---552552All0.000106
ORF1ab/nsp31257I1257delATT---524524L.10.998095
ORF1ab/nsp31257I1257VAttGtt264264All0.00005
ORF1ab/nsp31257I1257TaTtaCt250250All0.000048
ORF1ab/nsp31257I1257TaTtaCt206206B.1.1.70.000184
ORF1ab/nsp31257I1257VAttGtt8585B.1.1.70.000076
ORF1ab/nsp31257I1257IatTatC2340All0.000004
ORF1ab/nsp31257I1257IatTatA1740All0.000003
ORF1ab/nsp31257I1257VAttGtt3232AY.40.00005
ORF1ab/nsp31257I1257MatTatG2020All0.000004
ORF1ab/nsp31257I1257SaTtaGt1718All0.000003
ORF1ab/nsp31257I1257SATtTCt118All0
ORF1ab/nsp31257I1257LAttCtt1717All0.000003
ORF1ab/nsp31257I1257FAttTtt1616All0.000003
ORF1ab/nsp31257I1257NaTtaAt1516All0.000003
ORF1ab/nsp31257I1257NaTTaAC116All0
ORF1ab/nsp31257I1257VAttGtt1616AY.430.000071
ORF1ab/nsp31257I1257VAttGtt1313AY.250.000078
ORF1ab/nsp31257I1257IatTatA1313AY.440.000079
ORF1ab/nsp31257I1257VAttGtt1212B.1.1.5190.000477
ORF1ab/nsp31257I1257VAttGtt1010AY.440.000061
ORF1ab/nsp31257I1257TaTtaCt1010AY.440.000061
ORF1ab/nsp31257I1257MatTatG99B.1.5250.001018
ORF1ab/nsp31257I1257NaTtaAt99P.1.150.002091
ORF1ab/nsp31257I1257TaTtaCt88AY.40.000012
ORF1ab/nsp31257I1257FAttTtt88AY.440.000049
ORF1ab/nsp31257I1257VAttGtt88B.1.1.1630.061069
ORF1ab/nsp31257I1257del1aTta-t77All0.000001
ORF1ab/nsp31257I1257VAttGtt77AY.30.00007
ORF1ab/nsp31257I1257MatTatG77B.1.1.70.000006
ORF1ab/nsp31257I1257del1aTta-t77B.1.1.70.000006
ORF1ab/nsp31257I1257VAttGtt77B.1.5170.002989
ORF1ab/nsp31257I1257TaTtaCt66AY.250.000036
ORF1ab/nsp31257I1257VAttGtt66AY.50.000124
ORF1ab/nsp31257I1257delATT---66B.1.1.70.000005
ORF1ab/nsp31257I1257LAttCtt66B.1.20.000053
ORF1ab/nsp31257I1257VAttGtt55AY.290.000079
ORF1ab/nsp31257I1257FAttTtt55AY.50.000103
ORF1ab/nsp31257I1257VAttGtt55B.1.1.2140.000277
ORF1ab/nsp31257I1257SaTtaGt55B.1.1.250.002843
ORF1ab/nsp31257I1257VAttGtt55B.1.20.000044
ORF1ab/nsp31257I1257IatTatC55B.30.004153
ORF1ab/nsp31257I1257TaTtaCt55Q.80.000825
ORF1ab/nsp31257I1257VAttGtt44AY.1030.000025
ORF1ab/nsp31257I1257IatTatC34AY.40.000005
ORF1ab/nsp31257I1257IatTatA14AY.40.000002
ORF1ab/nsp31257I1257VAttGtt44AY.9.20.000147
ORF1ab/nsp31257I1257VAttGtt44B.1.1460.016949
ORF1ab/nsp31257I1257TaTtaCt44B.1.617.20.000015
ORF1ab/nsp31257I1257delATT---44P.1.140.000191
ORF1ab/nsp31257I1257VAttGtt33AY.100.00159
ORF1ab/nsp31257I1257SaTtaGt33B.10.000027
ORF1ab/nsp31257I1257VAttGtt33B.1.5820.001472
ORF1ab/nsp31257I1257VAttGtt33B.1.617.20.000011
ORF1ab/nsp31257I1257NaTtaAt220.111111
ORF1ab/nsp31257I1257del2aTTa--22All0
ORF1ab/nsp31257I1257IatTatC22AY.1030.000012
ORF1ab/nsp31257I1257NaTtaAt22AY.40.000003
ORF1ab/nsp31257I1257LAttCtt22AY.40.000003
ORF1ab/nsp31257I1257VAttGtt22AY.4.20.000043
ORF1ab/nsp31257I1257SaTtaGt22AY.430.000009
ORF1ab/nsp31257I1257LAttCtt22AY.430.000009
ORF1ab/nsp31257I1257delATT---22AY.470.000062
ORF1ab/nsp31257I1257IatTatC22AY.990.002099
ORF1ab/nsp31257I1257VAttGtt22B.1.10.000036
ORF1ab/nsp31257I1257MatTatG22B.1.1.3170.000823
ORF1ab/nsp31257I1257LAttCtt22B.1.1.70.000002
ORF1ab/nsp31257I1257SaTtaGt22B.1.1.70.000002
ORF1ab/nsp31257I1257SaTtaGt22B.1.1770.000026
ORF1ab/nsp31257I1257IatTatC22B.1.2210.000142
ORF1ab/nsp31257I1257VAttGtt22B.1.4290.000047
ORF1ab/nsp31257I1257MatTatG22B.1.617.20.000008
ORF1ab/nsp31257I1257LAttCtt110.055556
ORF1ab/nsp31257I1257FAttTtt110.055556
ORF1ab/nsp31257I1257YATtTAt110.055556
ORF1ab/nsp31257I1257YATtTAt11All0
ORF1ab/nsp31257I1257TaTtaCt11AY.1030.000006
ORF1ab/nsp31257I1257LAttCtt11AY.1030.000006
ORF1ab/nsp31257I1257SaTtaGt11AY.1030.000006
ORF1ab/nsp31257I1257VAttGtt11AY.1110.000183
ORF1ab/nsp31257I1257TaTtaCt11AY.1160.000287
ORF1ab/nsp31257I1257IatTatA11AY.1170.000085
ORF1ab/nsp31257I1257VAttGtt11AY.1190.000035
ORF1ab/nsp31257I1257IatTatC11AY.1200.000037
ORF1ab/nsp31257I1257TaTtaCt11AY.120.10.000321
ORF1ab/nsp31257I1257VAttGtt11AY.1210.000135
ORF1ab/nsp31257I1257VAttGtt11AY.140.000088
ORF1ab/nsp31257I1257SATtTCt11AY.160.00038
ORF1ab/nsp31257I1257VAttGtt11AY.230.00007
ORF1ab/nsp31257I1257delATT---11AY.250.000006
ORF1ab/nsp31257I1257TaTtaCt11AY.260.000028
ORF1ab/nsp31257I1257delATT---11AY.30.00001
ORF1ab/nsp31257I1257IatTatC11AY.30.00001
ORF1ab/nsp31257I1257VAttGtt11AY.330.000067
ORF1ab/nsp31257I1257delATT---11AY.40.000002
ORF1ab/nsp31257I1257SaTtaGt11AY.40.000002
ORF1ab/nsp31257I1257delATT---11AY.4.50.000107
ORF1ab/nsp31257I1257VAttGtt11AY.420.00004
ORF1ab/nsp31257I1257NaTtaAt11AY.440.000006
ORF1ab/nsp31257I1257delATT---11AY.440.000006
ORF1ab/nsp31257I1257VAttGtt11AY.460.000104
ORF1ab/nsp31257I1257VAttGtt11AY.46.30.000934
ORF1ab/nsp31257I1257TaTtaCt11AY.470.000031
ORF1ab/nsp31257I1257VAttGtt11AY.470.000031
ORF1ab/nsp31257I1257IatTatC11AY.610.000105
ORF1ab/nsp31257I1257delATT---11AY.660.00107
ORF1ab/nsp31257I1257VAttGtt11AY.710.000475
ORF1ab/nsp31257I1257VAttGtt11AY.750.000056
ORF1ab/nsp31257I1257VAttGtt11AY.780.001541
ORF1ab/nsp31257I1257VAttGtt11AY.840.000437
ORF1ab/nsp31257I1257delATT---11B.10.000009
ORF1ab/nsp31257I1257VAttGtt11B.10.000009
ORF1ab/nsp31257I1257delATT---11B.1.10.000018
ORF1ab/nsp31257I1257del2aTTa--11B.1.10.000018
ORF1ab/nsp31257I1257delATT---11B.1.1.1330.008475
ORF1ab/nsp31257I1257IatTatA11B.1.1.1720.018182
ORF1ab/nsp31257I1257VAttGtt11B.1.1.2220.000204
ORF1ab/nsp31257I1257IatTatC11B.1.1.2690.001353
ORF1ab/nsp31257I1257LAttCtt11B.1.1.3340.016393
ORF1ab/nsp31257I1257delATT---11B.1.1.3480.000796
ORF1ab/nsp31257I1257VAttGtt11B.1.1.3620.005618
ORF1ab/nsp31257I1257IatTatA11B.1.1.3770.001381
ORF1ab/nsp31257I1257del2aTTa--11B.1.1.4090.002833
ORF1ab/nsp31257I1257NaTtaAt11B.1.1.5190.00004
ORF1ab/nsp31257I1257IatTatC11B.1.1.5190.00004
ORF1ab/nsp31257I1257VAttGtt11B.1.1.5230.001563
ORF1ab/nsp31257I1257LAttCtt11B.1.1770.000013
ORF1ab/nsp31257I1257delATT---11B.1.1770.000013
ORF1ab/nsp31257I1257TaTtaCt11B.1.1770.000013
ORF1ab/nsp31257I1257FAttTtt11B.1.177.40.000211
ORF1ab/nsp31257I1257delATT---11B.1.177.510.004566
ORF1ab/nsp31257I1257delATT---11B.1.177.620.001192
ORF1ab/nsp31257I1257TaTtaCt11B.1.177.730.000566
ORF1ab/nsp31257I1257delATT---11B.1.177.830.001481
ORF1ab/nsp31257I1257TaTtaCt11B.1.20.000009
ORF1ab/nsp31257I1257IatTatC11B.1.20.000009
ORF1ab/nsp31257I1257TaTtaCt11B.1.2210.000071
ORF1ab/nsp31257I1257IatTatC11B.1.2580.000067
ORF1ab/nsp31257I1257TaTtaCt11B.1.3510.00003
ORF1ab/nsp31257I1257VAttGtt11B.1.3690.000285
ORF1ab/nsp31257I1257IatTatC11B.1.4690.00361
ORF1ab/nsp31257I1257VAttGtt11B.1.5250.000113
ORF1ab/nsp31257I1257VAttGtt11B.1.5260.000024
ORF1ab/nsp31257I1257VAttGtt11B.1.5960.000087
ORF1ab/nsp31257I1257LAttCtt11B.1.5960.000087
ORF1ab/nsp31257I1257TaTtaCt11B.1.5960.000087
ORF1ab/nsp31257I1257IatTatC11B.1.617.20.000004
ORF1ab/nsp31257I1257delATT---11B.1.617.20.000004
ORF1ab/nsp31257I1257FAttTtt11B.1.617.20.000004
ORF1ab/nsp31257I1257delATT---11B.1.6300.005236
ORF1ab/nsp31257I1257NaTTaAC11C.370.000116
ORF1ab/nsp31257I1257VAttGtt11P.10.000016
ORF1ab/nsp31257I1257VAttGtt11P.20.000187
ORF1ab/nsp31257I1257VAttGtt11Q.30.000145
ORF1ab/nsp31257I1257SaTtaGt11R.10.00009
ORF1ab/nsp31257I1257VAttGtt11R.10.00009