CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1256

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31256D1256DD2074DsyngaCgaT86086016485-6487
ORF1ab/nsp31256D1256ND2074NnonsynGacAac56956916485-6487
ORF1ab/nsp31256D1256delD2074deldelGAC---55655616485-6487
ORF1ab/nsp31256D1256YD2074YnonsynGacTac23523516485-6487
ORF1ab/nsp31256D1256GD2074GnonsyngAcgGc1421390.9788736485-6487
ORF1ab/nsp31256D1256GD2074GnonsyngACgGT14220.01408456485-6487
ORF1ab/nsp31256D1256GD2074GnonsyngACgGA14210.007042256485-6487
ORF1ab/nsp31256D1256ED2074EnonsyngaCgaG47330.7021286485-6487
ORF1ab/nsp31256D1256ED2074EnonsyngaCgaA47140.2978726485-6487
ORF1ab/nsp31256D1256AD2074AnonsyngAcgCc7716485-6487
ORF1ab/nsp31256D1256HD2074HnonsynGacCac3316485-6487
ORF1ab/nsp31256D1256VD2074VnonsyngACgTT320.6666676485-6487
ORF1ab/nsp31256D1256VD2074VnonsyngAcgTc310.3333336485-6487
ORF1ab/nsp31256D1256FD2074FnonsynGAcTTc1116485-6487
ORF1ab/nsp31256D1256SD2074SnonsynGACAGT1116485-6487
ORF1ab/nsp31256D1256RD2074RnonsynGACCGT1116485-6487
ORF1ab/nsp31256D1256del1D2074del1delgAcg-c1116485-6487
ORF1ab/nsp31256D1256KD2074KnonsynGaCAaA1116485-6487

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31256D1256DgaCgaT860860All0.000164
ORF1ab/nsp31256D1256NGacAac569569All0.000109
ORF1ab/nsp31256D1256delGAC---556556All0.000106
ORF1ab/nsp31256D1256delGAC---525525L.11
ORF1ab/nsp31256D1256DgaCgaT349349AY.40.000543
ORF1ab/nsp31256D1256NGacAac267267B.1.1.70.000239
ORF1ab/nsp31256D1256YGacTac235235All0.000045
ORF1ab/nsp31256D1256GgAcgGc139142All0.000027
ORF1ab/nsp31256D1256GgACgGT2142All0
ORF1ab/nsp31256D1256GgACgGA1142All0
ORF1ab/nsp31256D1256NGacAac130130B.1.20.001145
ORF1ab/nsp31256D1256DgaCgaT117117B.1.1.70.000105
ORF1ab/nsp31256D1256DgaCgaT8686AY.440.000523
ORF1ab/nsp31256D1256NGacAac7777AY.440.000469
ORF1ab/nsp31256D1256EgaCgaG3347All0.000006
ORF1ab/nsp31256D1256EgaCgaA1447All0.000003
ORF1ab/nsp31256D1256DgaCgaT4444P.10.000693
ORF1ab/nsp31256D1256DgaCgaT4242AY.250.000253
ORF1ab/nsp31256D1256GgAcgGc3939AY.1170.003296
ORF1ab/nsp31256D1256DgaCgaT2727B.1.617.20.000102
ORF1ab/nsp31256D1256YGacTac2626B.1.177.860.00477
ORF1ab/nsp31256D1256YGacTac2525B.1.1.70.000022
ORF1ab/nsp31256D1256GgAcgGc2323B.1.617.20.000087
ORF1ab/nsp31256D1256NGacAac2121D.20.001576
ORF1ab/nsp31256D1256YGacTac1919AY.40.00003
ORF1ab/nsp31256D1256YGacTac1919B.1.617.20.000072
ORF1ab/nsp31256D1256DgaCgaT1515AY.30.000149
ORF1ab/nsp31256D1256GgAcgGc1414AY.270.000906
ORF1ab/nsp31256D1256DgaCgaT1313AY.1030.000081
ORF1ab/nsp31256D1256EgaCgaG1313B.1.1770.000171
ORF1ab/nsp31256D1256DgaCgaT1212AZ.10.010408
ORF1ab/nsp31256D1256NGacAac1212B.1.5990.043796
ORF1ab/nsp31256D1256NGacAac1111AY.40.000017
ORF1ab/nsp31256D1256DgaCgaT1111B.10.000101
ORF1ab/nsp31256D1256YGacTac1111B.1.177.810.002083
ORF1ab/nsp31256D1256GgAcgGc1111B.1.4290.000259
ORF1ab/nsp31256D1256YGacTac1010AY.430.000044
ORF1ab/nsp31256D1256YGacTac1010B.1.3620.015408
ORF1ab/nsp31256D1256NGacAac99B.10.000082
ORF1ab/nsp31256D1256YGacTac99B.10.000082
ORF1ab/nsp31256D1256EgaCgaG99B.1.1.70.000008
ORF1ab/nsp31256D1256YGacTac99B.1.20.000079
ORF1ab/nsp31256D1256DgaCgaT99B.1.5200.195652
ORF1ab/nsp31256D1256YGacTac88B.1.160.280.023392
ORF1ab/nsp31256D1256EgaCgaG88B.1.5250.000905
ORF1ab/nsp31256D1256AgAcgCc77All0.000001
ORF1ab/nsp31256D1256YGacTac77AY.1130.000997
ORF1ab/nsp31256D1256DgaCgaT77B.1.10.000127
ORF1ab/nsp31256D1256NGacAac77B.1.1770.000092
ORF1ab/nsp31256D1256NGacAac77B.1.177.810.001325
ORF1ab/nsp31256D1256DgaCgaT77B.1.20.000062
ORF1ab/nsp31256D1256YGacTac77B.1.4290.000165
ORF1ab/nsp31256D1256DgaCgaT66AY.1020.000159
ORF1ab/nsp31256D1256YGacTac66AY.260.00017
ORF1ab/nsp31256D1256GgAcgGc66AY.46.60.000433
ORF1ab/nsp31256D1256delGAC---66B.1.1.100.006689
ORF1ab/nsp31256D1256DgaCgaT66B.1.6210.000531
ORF1ab/nsp31256D1256DgaCgaT55AY.290.000079
ORF1ab/nsp31256D1256DgaCgaT55AY.430.000022
ORF1ab/nsp31256D1256YGacTac55AY.50.000103
ORF1ab/nsp31256D1256GgAcgGc55AY.60.000206
ORF1ab/nsp31256D1256delGAC---55B.1.1.70.000004
ORF1ab/nsp31256D1256DgaCgaT55B.1.2580.000333
ORF1ab/nsp31256D1256YGacTac55B.1.36.310.008757
ORF1ab/nsp31256D1256NGacAac55B.1.617.20.000019
ORF1ab/nsp31256D1256GgAcgGc240.111111
ORF1ab/nsp31256D1256GgACgGA140.055556
ORF1ab/nsp31256D1256GgACgGT140.055556
ORF1ab/nsp31256D1256YGacTac44AY.290.000063
ORF1ab/nsp31256D1256DgaCgaT44AY.390.000099
ORF1ab/nsp31256D1256GgAcgGc44AY.390.000099
ORF1ab/nsp31256D1256EgaCgaA44AY.40.000006
ORF1ab/nsp31256D1256NGacAac44AY.430.000018
ORF1ab/nsp31256D1256YGacTac44B.1.10.000073
ORF1ab/nsp31256D1256DgaCgaT44B.1.360.000584
ORF1ab/nsp31256D1256delGAC---44P.1.140.000191
ORF1ab/nsp31256D1256HGacCac33All0.000001
ORF1ab/nsp31256D1256VgACgTT23All0
ORF1ab/nsp31256D1256VgAcgTc13All0
ORF1ab/nsp31256D1256DgaCgaT33AY.1140.000693
ORF1ab/nsp31256D1256YGacTac33AY.250.000018
ORF1ab/nsp31256D1256NGacAac33AY.250.000018
ORF1ab/nsp31256D1256YGacTac33AY.30.00003
ORF1ab/nsp31256D1256DgaCgaT33AY.330.0002
ORF1ab/nsp31256D1256YGacTac33AY.340.000291
ORF1ab/nsp31256D1256GgAcgGc33AY.40.000005
ORF1ab/nsp31256D1256YGacTac33AY.420.000121
ORF1ab/nsp31256D1256YGacTac33AY.440.000018
ORF1ab/nsp31256D1256DgaCgaT33AY.470.000093
ORF1ab/nsp31256D1256GgAcgGc33AY.470.000093
ORF1ab/nsp31256D1256DgaCgaT33B.1.1.5190.000119
ORF1ab/nsp31256D1256DgaCgaT33B.1.1600.000094
ORF1ab/nsp31256D1256NGacAac33B.1.177.820.001432
ORF1ab/nsp31256D1256GgAcgGc33B.1.20.000026
ORF1ab/nsp31256D1256DgaCgaT33B.1.4270.000151
ORF1ab/nsp31256D1256DgaCgaT33B.1.4290.000071
ORF1ab/nsp31256D1256GgAcgGc33B.1.5260.000071
ORF1ab/nsp31256D1256DgaCgaT33B.1.5610.001191
ORF1ab/nsp31256D1256AgAcgCc33B.1.617.20.000011
ORF1ab/nsp31256D1256DgaCgaT33P.1.10.000953
ORF1ab/nsp31256D1256DgaCgaT33P.1.120.001452
ORF1ab/nsp31256D1256EgaCgaA220.111111
ORF1ab/nsp31256D1256VgAcgTc120.055556
ORF1ab/nsp31256D1256VgACgTT120.055556
ORF1ab/nsp31256D1256YGacTac22A.2.50.000998
ORF1ab/nsp31256D1256GgAcgGc22AY.250.000012
ORF1ab/nsp31256D1256YGacTac22AY.34.10.00102
ORF1ab/nsp31256D1256YGacTac22AY.370.000632
ORF1ab/nsp31256D1256DgaCgaT22AY.4.30.001684
ORF1ab/nsp31256D1256GgACgGT12AY.440.000006
ORF1ab/nsp31256D1256GgAcgGc12AY.440.000006
ORF1ab/nsp31256D1256DgaCgaT22AY.46.40.000329
ORF1ab/nsp31256D1256delGAC---22AY.470.000062
ORF1ab/nsp31256D1256YGacTac22B.1.1.2880.003831
ORF1ab/nsp31256D1256DgaCgaT22B.1.1.4480.004065
ORF1ab/nsp31256D1256GgAcgGc22B.1.1.70.000002
ORF1ab/nsp31256D1256YGacTac22B.1.1600.000062
ORF1ab/nsp31256D1256NGacAac22B.1.1600.000062
ORF1ab/nsp31256D1256EgaCgaA22B.1.2210.000142
ORF1ab/nsp31256D1256YGacTac22B.1.360.000292
ORF1ab/nsp31256D1256DgaCgaT22B.1.6230.001073
ORF1ab/nsp31256D1256DgaCgaT22D.20.00015
ORF1ab/nsp31256D1256YGacTac22P.10.000032
ORF1ab/nsp31256D1256DgaCgaT22P.1.140.000096
ORF1ab/nsp31256D1256DgaCgaT22Q.80.00033
ORF1ab/nsp31256D1256YGacTac110.055556
ORF1ab/nsp31256D1256DgaCgaT110.055556
ORF1ab/nsp31256D1256DgaCgaT11A.2.20.001689
ORF1ab/nsp31256D1256YGacTac11A.2.5.20.001572
ORF1ab/nsp31256D1256YGacTac11A.23.10.000704
ORF1ab/nsp31256D1256DgaCgaT11A.23.10.000704
ORF1ab/nsp31256D1256DgaCgaT11AD.20.000219
ORF1ab/nsp31256D1256KGaCAaA11All0
ORF1ab/nsp31256D1256SGACAGT11All0
ORF1ab/nsp31256D1256RGACCGT11All0
ORF1ab/nsp31256D1256del1gAcg-c11All0
ORF1ab/nsp31256D1256FGAcTTc11All0
ORF1ab/nsp31256D1256DgaCgaT11AY.10.000396
ORF1ab/nsp31256D1256GgAcgGc11AY.1000.000046
ORF1ab/nsp31256D1256GgAcgGc11AY.1020.000027
ORF1ab/nsp31256D1256NGacAac11AY.1030.000006
ORF1ab/nsp31256D1256YGacTac11AY.1030.000006
ORF1ab/nsp31256D1256EgaCgaA11AY.1030.000006
ORF1ab/nsp31256D1256GgAcgGc11AY.1030.000006
ORF1ab/nsp31256D1256DgaCgaT11AY.116.10.000311
ORF1ab/nsp31256D1256DgaCgaT11AY.1180.000063
ORF1ab/nsp31256D1256NGacAac11AY.1180.000063
ORF1ab/nsp31256D1256DgaCgaT11AY.1190.000035
ORF1ab/nsp31256D1256DgaCgaT11AY.1200.000037
ORF1ab/nsp31256D1256DgaCgaT11AY.120.10.000321
ORF1ab/nsp31256D1256DgaCgaT11AY.140.000088
ORF1ab/nsp31256D1256YGacTac11AY.16.10.00047
ORF1ab/nsp31256D1256NGacAac11AY.230.00007
ORF1ab/nsp31256D1256DgaCgaT11AY.230.00007
ORF1ab/nsp31256D1256YGacTac11AY.240.000431
ORF1ab/nsp31256D1256delGAC---11AY.250.000006
ORF1ab/nsp31256D1256EgaCgaA11AY.250.000006
ORF1ab/nsp31256D1256HGacCac11AY.250.000006
ORF1ab/nsp31256D1256DgaCgaT11AY.260.000028
ORF1ab/nsp31256D1256GgAcgGc11AY.260.000028
ORF1ab/nsp31256D1256DgaCgaT11AY.270.000065
ORF1ab/nsp31256D1256delGAC---11AY.30.00001
ORF1ab/nsp31256D1256EgaCgaA11AY.320.000532
ORF1ab/nsp31256D1256NGacAac11AY.360.000148
ORF1ab/nsp31256D1256DgaCgaT11AY.360.000148
ORF1ab/nsp31256D1256DgaCgaT11AY.380.000499
ORF1ab/nsp31256D1256delGAC---11AY.40.000002
ORF1ab/nsp31256D1256YGacTac11AY.4.20.000022
ORF1ab/nsp31256D1256GgAcgGc11AY.4.20.000022
ORF1ab/nsp31256D1256delGAC---11AY.4.50.000107
ORF1ab/nsp31256D1256GgAcgGc11AY.4.50.000107
ORF1ab/nsp31256D1256GgAcgGc11AY.420.00004
ORF1ab/nsp31256D1256EgaCgaA11AY.430.000004
ORF1ab/nsp31256D1256AgAcgCc11AY.430.000004
ORF1ab/nsp31256D1256GgAcgGc11AY.430.000004
ORF1ab/nsp31256D1256FGAcTTc11AY.440.000006
ORF1ab/nsp31256D1256DgaCgaT11AY.450.000122
ORF1ab/nsp31256D1256AgAcgCc11AY.450.000122
ORF1ab/nsp31256D1256YGacTac11AY.46.60.000072
ORF1ab/nsp31256D1256DgaCgaT11AY.46.60.000072
ORF1ab/nsp31256D1256YGacTac11AY.470.000031
ORF1ab/nsp31256D1256SGACAGT11AY.480.000465
ORF1ab/nsp31256D1256GgAcgGc11AY.550.000917
ORF1ab/nsp31256D1256EgaCgaG11AY.560.001605
ORF1ab/nsp31256D1256DgaCgaT11AY.60.000041
ORF1ab/nsp31256D1256delGAC---11AY.660.00107
ORF1ab/nsp31256D1256YGacTac11AY.680.000274
ORF1ab/nsp31256D1256DgaCgaT11AY.690.000187
ORF1ab/nsp31256D1256EgaCgaG11AY.70.000196
ORF1ab/nsp31256D1256del1gAcg-c11AY.710.000475
ORF1ab/nsp31256D1256DgaCgaT11AY.740.000116
ORF1ab/nsp31256D1256YGacTac11AY.750.000056
ORF1ab/nsp31256D1256DgaCgaT11AY.840.000437
ORF1ab/nsp31256D1256NGacAac11AY.980.000079
ORF1ab/nsp31256D1256DgaCgaT11AY.98.10.000048
ORF1ab/nsp31256D1256YGacTac11AY.99.20.000092
ORF1ab/nsp31256D1256DgaCgaT11B0.000128
ORF1ab/nsp31256D1256AgAcgCc11B.10.000009
ORF1ab/nsp31256D1256EgaCgaA11B.10.000009
ORF1ab/nsp31256D1256NGacAac11B.1.10.000018
ORF1ab/nsp31256D1256delGAC---11B.1.10.000018
ORF1ab/nsp31256D1256delGAC---11B.1.1.1330.008475
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp31256D1256YGacTac11B.1.1.2140.000055
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp31256D1256YGacTac11B.1.1.2280.003049
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.2790.001121
ORF1ab/nsp31256D1256YGacTac11B.1.1.310.066667
ORF1ab/nsp31256D1256YGacTac11B.1.1.3110.000358
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.340.013158
ORF1ab/nsp31256D1256YGacTac11B.1.1.3480.000796
ORF1ab/nsp31256D1256delGAC---11B.1.1.3480.000796
ORF1ab/nsp31256D1256YGacTac11B.1.1.370.000193
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.3720.000689
ORF1ab/nsp31256D1256GgAcgGc11B.1.1.3770.001381
ORF1ab/nsp31256D1256DgaCgaT11B.1.1.630.000386
ORF1ab/nsp31256D1256GgAcgGc11B.1.1040.00369
ORF1ab/nsp31256D1256delGAC---11B.1.1770.000013
ORF1ab/nsp31256D1256GgAcgGc11B.1.1770.000013
ORF1ab/nsp31256D1256DgaCgaT11B.1.177.40.000211
ORF1ab/nsp31256D1256YGacTac11B.1.177.440.000519
ORF1ab/nsp31256D1256delGAC---11B.1.177.510.004566
ORF1ab/nsp31256D1256delGAC---11B.1.177.620.001192
ORF1ab/nsp31256D1256VgACgTT11B.1.177.730.000566
ORF1ab/nsp31256D1256delGAC---11B.1.177.830.001481
ORF1ab/nsp31256D1256NGacAac11B.1.2210.000071
ORF1ab/nsp31256D1256NGacAac11B.1.360.000146
ORF1ab/nsp31256D1256HGacCac11B.1.36.10.00114
ORF1ab/nsp31256D1256DgaCgaT11B.1.36.290.000517
ORF1ab/nsp31256D1256GgAcgGc11B.1.36.80.001
ORF1ab/nsp31256D1256DgaCgaT11B.1.3990.001934
ORF1ab/nsp31256D1256DgaCgaT11B.1.4130.004255
ORF1ab/nsp31256D1256AgAcgCc11B.1.4270.00005
ORF1ab/nsp31256D1256GgAcgGc11B.1.4270.00005
ORF1ab/nsp31256D1256NGacAac11B.1.4290.000024
ORF1ab/nsp31256D1256HGacCac11B.1.4290.000024
ORF1ab/nsp31256D1256DgaCgaT11B.1.4410.009615
ORF1ab/nsp31256D1256GgAcgGc11B.1.4990.00105
ORF1ab/nsp31256D1256YGacTac11B.1.5080.025641
ORF1ab/nsp31256D1256NGacAac11B.1.5170.000427
ORF1ab/nsp31256D1256DgaCgaT11B.1.5250.000113
ORF1ab/nsp31256D1256DgaCgaT11B.1.5260.000024
ORF1ab/nsp31256D1256DgaCgaT11B.1.5750.000303
ORF1ab/nsp31256D1256YGacTac11B.1.5960.000087
ORF1ab/nsp31256D1256GgAcgGc11B.1.5960.000087
ORF1ab/nsp31256D1256DgaCgaT11B.1.6000.005848
ORF1ab/nsp31256D1256EgaCgaA11B.1.6060.006024
ORF1ab/nsp31256D1256delGAC---11B.1.617.20.000004
ORF1ab/nsp31256D1256delGAC---11B.1.6300.005236
ORF1ab/nsp31256D1256EgaCgaG11B.1.6360.006711
ORF1ab/nsp31256D1256DgaCgaT11B.6.60.000889
ORF1ab/nsp31256D1256KGaCAaA11C.350.000774
ORF1ab/nsp31256D1256DgaCgaT11C.370.000116
ORF1ab/nsp31256D1256YGacTac11D.20.000075
ORF1ab/nsp31256D1256RGACCGT11P.10.000016
ORF1ab/nsp31256D1256GgAcgGc11P.1.150.000232
ORF1ab/nsp31256D1256DgaCgaT11P.1.150.000232
ORF1ab/nsp31256D1256GgAcgGc11P.20.000187
ORF1ab/nsp31256D1256NGacAac11R.10.00009