CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1255

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31255G1255GG2073GsynggAggG6463750.5804956482-6484
ORF1ab/nsp31255G1255GG2073GsynggAggT6462360.3653256482-6484
ORF1ab/nsp31255G1255GG2073GsynggAggC646350.05417966482-6484
ORF1ab/nsp31255G1255delG2073deldelGGA---55555516482-6484
ORF1ab/nsp31255G1255VG2073VnonsyngGagTa4974960.9979886482-6484
ORF1ab/nsp31255G1255VG2073VnonsyngGAgTT49710.002012076482-6484
ORF1ab/nsp31255G1255RG2073RnonsynGgaAga2071780.8599036482-6484
ORF1ab/nsp31255G1255RG2073RnonsynGgaCga207290.1400976482-6484
ORF1ab/nsp31255G1255EG2073EnonsyngGagAa73720.9863016482-6484
ORF1ab/nsp31255G1255EG2073EnonsyngGAgAG7310.01369866482-6484
ORF1ab/nsp31255G1255XG2073XnonsynGgaTga530.66482-6484
ORF1ab/nsp31255G1255XG2073XnonsynGGaTAa510.26482-6484
ORF1ab/nsp31255G1255XG2073XnonsynGGATAG510.26482-6484
ORF1ab/nsp31255G1255del1G2073del1delGga-ga2216482-6484
ORF1ab/nsp31255G1255WG2073WnonsynGgATgG1116482-6484
ORF1ab/nsp31255G1255AG2073AnonsyngGagCa1116482-6484
ORF1ab/nsp31255G1255QG2073QnonsynGGaCAa1116482-6484

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31255G1255GggAggG375646All0.000072
ORF1ab/nsp31255G1255GggAggT236646All0.000045
ORF1ab/nsp31255G1255GggAggC35646All0.000007
ORF1ab/nsp31255G1255delGGA---555555All0.000106
ORF1ab/nsp31255G1255delGGA---525525L.11
ORF1ab/nsp31255G1255VgGagTa496497All0.000095
ORF1ab/nsp31255G1255VgGAgTT1497All0
ORF1ab/nsp31255G1255GggAggG258269B.1.1.70.000231
ORF1ab/nsp31255G1255GggAggT8269B.1.1.70.000007
ORF1ab/nsp31255G1255GggAggC3269B.1.1.70.000003
ORF1ab/nsp31255G1255GggAggT218218AY.430.000966
ORF1ab/nsp31255G1255RGgaAga178207All0.000034
ORF1ab/nsp31255G1255RGgaCga29207All0.000006
ORF1ab/nsp31255G1255VgGagTa141141D.20.010581
ORF1ab/nsp31255G1255VgGagTa129129B.1.621.10.06525
ORF1ab/nsp31255G1255VgGagTa9898B.1.4000.042042
ORF1ab/nsp31255G1255EgGagAa7273All0.000014
ORF1ab/nsp31255G1255EgGAgAG173All0
ORF1ab/nsp31255G1255GggAggG4646AY.7.10.005184
ORF1ab/nsp31255G1255RGgaAga3738B.1.1.70.000033
ORF1ab/nsp31255G1255RGgaCga138B.1.1.70.000001
ORF1ab/nsp31255G1255RGgaCga2525Q.10.003158
ORF1ab/nsp31255G1255GggAggC2323B.1.3510.000684
ORF1ab/nsp31255G1255VgGagTa1818AY.330.001202
ORF1ab/nsp31255G1255EgGagAa1717AY.40.000026
ORF1ab/nsp31255G1255RGgaAga1515AY.46.50.002976
ORF1ab/nsp31255G1255EgGagAa1313B.1.1.70.000012
ORF1ab/nsp31255G1255VgGagTa1213B.1.1.70.000011
ORF1ab/nsp31255G1255VgGAgTT113B.1.1.70.000001
ORF1ab/nsp31255G1255VgGagTa1212AY.1030.000075
ORF1ab/nsp31255G1255VgGagTa1212B.10.00011
ORF1ab/nsp31255G1255RGgaAga1212B.1.10.000218
ORF1ab/nsp31255G1255RGgaAga1111AY.440.000067
ORF1ab/nsp31255G1255RGgaAga1010AY.250.00006
ORF1ab/nsp31255G1255RGgaAga1010B.1.617.20.000038
ORF1ab/nsp31255G1255GggAggG1010R.10.0009
ORF1ab/nsp31255G1255EgGagAa99AY.1020.000239
ORF1ab/nsp31255G1255RGgaAga99AY.300.003562
ORF1ab/nsp31255G1255VgGagTa77AY.39.10.000277
ORF1ab/nsp31255G1255GggAggG67B.1.20.000053
ORF1ab/nsp31255G1255GggAggT17B.1.20.000009
ORF1ab/nsp31255G1255delGGA---66B.1.1.100.006689
ORF1ab/nsp31255G1255XGgaTga35All0.000001
ORF1ab/nsp31255G1255XGGATAG15All0
ORF1ab/nsp31255G1255XGGaTAa15All0
ORF1ab/nsp31255G1255RGgaAga55AY.1190.000177
ORF1ab/nsp31255G1255GggAggG55AY.46.20.003177
ORF1ab/nsp31255G1255VgGagTa55AY.99.20.000461
ORF1ab/nsp31255G1255GggAggC25B.1.10.000036
ORF1ab/nsp31255G1255GggAggG25B.1.10.000036
ORF1ab/nsp31255G1255GggAggT15B.1.10.000018
ORF1ab/nsp31255G1255delGGA---55B.1.1.70.000004
ORF1ab/nsp31255G1255VgGagTa55B.1.1770.000066
ORF1ab/nsp31255G1255EgGagAa55B.1.617.20.000019
ORF1ab/nsp31255G1255RGgaAga55B.1.6280.001762
ORF1ab/nsp31255G1255GggAggG55C.230.02907
ORF1ab/nsp31255G1255RGgaAga44AY.200.000155
ORF1ab/nsp31255G1255GggAggG44AY.250.000024
ORF1ab/nsp31255G1255GggAggG44AY.40.000006
ORF1ab/nsp31255G1255GggAggG44AY.790.004843
ORF1ab/nsp31255G1255EgGagAa44B.1.36.350.010417
ORF1ab/nsp31255G1255VgGagTa44B.1.617.20.000015
ORF1ab/nsp31255G1255RGgaAga44P.10.000063
ORF1ab/nsp31255G1255delGGA---44P.1.140.000191
ORF1ab/nsp31255G1255XGGaTAa130.055556
ORF1ab/nsp31255G1255XGgaTga130.055556
ORF1ab/nsp31255G1255XGGATAG130.055556
ORF1ab/nsp31255G1255RGgaAga33AY.1030.000019
ORF1ab/nsp31255G1255VgGagTa33AY.1190.000106
ORF1ab/nsp31255G1255VgGagTa33AY.40.000005
ORF1ab/nsp31255G1255RGgaAga33AY.40.000005
ORF1ab/nsp31255G1255RGgaAga33AY.430.000013
ORF1ab/nsp31255G1255VgGagTa33AY.440.000018
ORF1ab/nsp31255G1255GggAggG23AY.440.000012
ORF1ab/nsp31255G1255GggAggT13AY.440.000006
ORF1ab/nsp31255G1255RGgaAga33B.10.000027
ORF1ab/nsp31255G1255VgGagTa33B.1.20.000026
ORF1ab/nsp31255G1255GggAggG33Q.80.000495
ORF1ab/nsp31255G1255EgGagAa120.055556
ORF1ab/nsp31255G1255EgGAgAG120.055556
ORF1ab/nsp31255G1255VgGagTa22A0.000774
ORF1ab/nsp31255G1255del1Gga-ga22All0
ORF1ab/nsp31255G1255RGgaAga22AY.1000.000092
ORF1ab/nsp31255G1255RGgaAga22AY.1020.000053
ORF1ab/nsp31255G1255GggAggG22AY.1020.000053
ORF1ab/nsp31255G1255EgGagAa22AY.1030.000012
ORF1ab/nsp31255G1255GggAggT22AY.1190.000071
ORF1ab/nsp31255G1255EgGagAa22AY.1200.000074
ORF1ab/nsp31255G1255RGgaAga22AY.20.000712
ORF1ab/nsp31255G1255GggAggT12AY.200.000039
ORF1ab/nsp31255G1255GggAggG12AY.200.000039
ORF1ab/nsp31255G1255RGgaAga22AY.260.000057
ORF1ab/nsp31255G1255RGgaAga22AY.30.00002
ORF1ab/nsp31255G1255GggAggC12AY.30.00001
ORF1ab/nsp31255G1255GggAggG12AY.30.00001
ORF1ab/nsp31255G1255EgGagAa22AY.3.10.000171
ORF1ab/nsp31255G1255VgGagTa22AY.4.10.001475
ORF1ab/nsp31255G1255VgGagTa22AY.420.00008
ORF1ab/nsp31255G1255RGgaAga22AY.46.60.000144
ORF1ab/nsp31255G1255delGGA---22AY.470.000062
ORF1ab/nsp31255G1255GggAggG12AY.470.000031
ORF1ab/nsp31255G1255GggAggC12AY.470.000031
ORF1ab/nsp31255G1255RGgaAga22AY.610.00021
ORF1ab/nsp31255G1255RGgaAga22AY.840.000875
ORF1ab/nsp31255G1255VgGagTa22AY.98.10.000097
ORF1ab/nsp31255G1255GggAggG22B.10.000018
ORF1ab/nsp31255G1255VgGagTa22B.1.10.000036
ORF1ab/nsp31255G1255RGgaAga22B.1.1.390.001019
ORF1ab/nsp31255G1255VgGagTa22B.1.1.4320.002532
ORF1ab/nsp31255G1255RGgaAga22B.1.1.4320.002532
ORF1ab/nsp31255G1255VgGagTa22B.1.1.630.000772
ORF1ab/nsp31255G1255RGgaAga22B.1.1.700.000682
ORF1ab/nsp31255G1255RGgaAga22B.1.2210.000142
ORF1ab/nsp31255G1255VgGagTa22B.1.3660.009756
ORF1ab/nsp31255G1255VgGagTa22B.1.4290.000047
ORF1ab/nsp31255G1255RGgaAga12B.1.4290.000024
ORF1ab/nsp31255G1255RGgaCga12B.1.4290.000024
ORF1ab/nsp31255G1255GggAggG22B.1.617.20.000008
ORF1ab/nsp31255G1255VgGagTa22B.1.6210.000177
ORF1ab/nsp31255G1255GggAggG22P.10.000032
ORF1ab/nsp31255G1255GggAggG22P.1.100.000539
ORF1ab/nsp31255G1255RGgaAga22P.1.140.000096
ORF1ab/nsp31255G1255RGgaAga110.055556
ORF1ab/nsp31255G1255WGgATgG110.055556
ORF1ab/nsp31255G1255GggAggG110.055556
ORF1ab/nsp31255G1255VgGagTa11A.20.000662
ORF1ab/nsp31255G1255RGgaAga11A.2.40.003367
ORF1ab/nsp31255G1255GggAggC11A.2.50.000499
ORF1ab/nsp31255G1255RGgaAga11AD.20.000219
ORF1ab/nsp31255G1255WGgATgG11All0
ORF1ab/nsp31255G1255AgGagCa11All0
ORF1ab/nsp31255G1255QGGaCAa11All0
ORF1ab/nsp31255G1255GggAggG11AY.1030.000006
ORF1ab/nsp31255G1255EgGagAa11AY.1050.000643
ORF1ab/nsp31255G1255GggAggC11AY.1170.000085
ORF1ab/nsp31255G1255VgGagTa11AY.1200.000037
ORF1ab/nsp31255G1255RGgaAga11AY.160.00038
ORF1ab/nsp31255G1255VgGagTa11AY.250.000006
ORF1ab/nsp31255G1255delGGA---11AY.250.000006
ORF1ab/nsp31255G1255EgGagAa11AY.260.000028
ORF1ab/nsp31255G1255VgGagTa11AY.290.000016
ORF1ab/nsp31255G1255RGgaAga11AY.290.000016
ORF1ab/nsp31255G1255delGGA---11AY.30.00001
ORF1ab/nsp31255G1255VgGagTa11AY.30.00001
ORF1ab/nsp31255G1255RGgaAga11AY.3.10.000085
ORF1ab/nsp31255G1255RGgaAga11AY.390.000025
ORF1ab/nsp31255G1255GggAggG11AY.39.10.00004
ORF1ab/nsp31255G1255delGGA---11AY.40.000002
ORF1ab/nsp31255G1255GggAggG11AY.4.20.000022
ORF1ab/nsp31255G1255RGgaCga11AY.4.20.000022
ORF1ab/nsp31255G1255EgGagAa11AY.4.20.000022
ORF1ab/nsp31255G1255VgGagTa11AY.4.2.10.000149
ORF1ab/nsp31255G1255VgGagTa11AY.4.50.000107
ORF1ab/nsp31255G1255delGGA---11AY.4.50.000107
ORF1ab/nsp31255G1255EgGagAa11AY.410.000294
ORF1ab/nsp31255G1255EgGagAa11AY.430.000004
ORF1ab/nsp31255G1255del1Gga-ga11AY.440.000006
ORF1ab/nsp31255G1255EgGagAa11AY.440.000006
ORF1ab/nsp31255G1255EgGagAa11AY.450.000122
ORF1ab/nsp31255G1255RGgaCga11AY.46.40.000165
ORF1ab/nsp31255G1255GggAggG11AY.480.000465
ORF1ab/nsp31255G1255GggAggG11AY.50.000021
ORF1ab/nsp31255G1255GggAggG11AY.60.000041
ORF1ab/nsp31255G1255RGgaAga11AY.650.000533
ORF1ab/nsp31255G1255delGGA---11AY.660.00107
ORF1ab/nsp31255G1255GggAggG11AY.670.000464
ORF1ab/nsp31255G1255RGgaAga11AY.70.000196
ORF1ab/nsp31255G1255GggAggG11AY.750.000056
ORF1ab/nsp31255G1255VgGagTa11AY.850.000427
ORF1ab/nsp31255G1255RGgaAga11AY.880.000884
ORF1ab/nsp31255G1255GggAggT11AY.98.10.000048
ORF1ab/nsp31255G1255del1Gga-ga11B0.000128
ORF1ab/nsp31255G1255EgGagAa11B0.000128
ORF1ab/nsp31255G1255XGgaTga11B0.000128
ORF1ab/nsp31255G1255EgGagAa11B.10.000009
ORF1ab/nsp31255G1255delGGA---11B.1.10.000018
ORF1ab/nsp31255G1255delGGA---11B.1.1.1330.008475
ORF1ab/nsp31255G1255VgGagTa11B.1.1.1890.001513
ORF1ab/nsp31255G1255RGgaAga11B.1.1.2140.000055
ORF1ab/nsp31255G1255EgGagAa11B.1.1.2140.000055
ORF1ab/nsp31255G1255EgGagAa11B.1.1.2980.000862
ORF1ab/nsp31255G1255VgGagTa11B.1.1.3290.003846
ORF1ab/nsp31255G1255VgGagTa11B.1.1.3350.012987
ORF1ab/nsp31255G1255delGGA---11B.1.1.3480.000796
ORF1ab/nsp31255G1255RGgaAga11B.1.1.3970.002252
ORF1ab/nsp31255G1255RGgaAga11B.1.1.4090.002833
ORF1ab/nsp31255G1255RGgaAga11B.1.1.5190.00004
ORF1ab/nsp31255G1255GggAggG11B.1.1.5190.00004
ORF1ab/nsp31255G1255AgGagCa11B.1.1.70.000001
ORF1ab/nsp31255G1255GggAggG11B.1.1.700.000341
ORF1ab/nsp31255G1255EgGagAa11B.1.1260.001276
ORF1ab/nsp31255G1255GggAggC11B.1.1770.000013
ORF1ab/nsp31255G1255delGGA---11B.1.1770.000013
ORF1ab/nsp31255G1255GggAggC11B.1.177.100.000878
ORF1ab/nsp31255G1255GggAggC11B.1.177.210.000076
ORF1ab/nsp31255G1255delGGA---11B.1.177.510.004566
ORF1ab/nsp31255G1255delGGA---11B.1.177.620.001192
ORF1ab/nsp31255G1255delGGA---11B.1.177.830.001481
ORF1ab/nsp31255G1255EgGagAa11B.1.20.000009
ORF1ab/nsp31255G1255XGgaTga11B.1.20.000009
ORF1ab/nsp31255G1255GggAggT11B.1.2430.00007
ORF1ab/nsp31255G1255VgGagTa11B.1.3110.000275
ORF1ab/nsp31255G1255RGgaAga11B.1.3510.00003
ORF1ab/nsp31255G1255RGgaAga11B.1.360.000146
ORF1ab/nsp31255G1255VgGagTa11B.1.3690.000285
ORF1ab/nsp31255G1255VgGagTa11B.1.3960.000706
ORF1ab/nsp31255G1255EgGagAa11B.1.4270.00005
ORF1ab/nsp31255G1255VgGagTa11B.1.4870.019608
ORF1ab/nsp31255G1255GggAggG11B.1.5260.000024
ORF1ab/nsp31255G1255VgGagTa11B.1.5610.000397
ORF1ab/nsp31255G1255GggAggT11B.1.5800.004065
ORF1ab/nsp31255G1255VgGagTa11B.1.5950.000261
ORF1ab/nsp31255G1255EgGagAa11B.1.5960.000087
ORF1ab/nsp31255G1255delGGA---11B.1.617.20.000004
ORF1ab/nsp31255G1255RGgaAga11B.1.6210.000089
ORF1ab/nsp31255G1255GggAggT11B.1.6210.000089
ORF1ab/nsp31255G1255VgGagTa11B.1.6230.000536
ORF1ab/nsp31255G1255GggAggG11B.1.6370.000073
ORF1ab/nsp31255G1255VgGagTa11B.350.007812
ORF1ab/nsp31255G1255EgGagAa11C.350.000774
ORF1ab/nsp31255G1255VgGagTa11D.30.005917
ORF1ab/nsp31255G1255EgGagAa11P.10.000016
ORF1ab/nsp31255G1255QGGaCAa11P.10.000016
ORF1ab/nsp31255G1255VgGagTa11P.10.000016