CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1254

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31254V1254delV2072deldelGTA---57857816479-6481
ORF1ab/nsp31254V1254IV2072InonsynGtaAta41441416479-6481
ORF1ab/nsp31254V1254LV2072LnonsynGtaTta2512480.9880486479-6481
ORF1ab/nsp31254V1254LV2072LnonsynGtaCta25130.01195226479-6481
ORF1ab/nsp31254V1254VV2072VsyngtAgtG107960.8971966479-6481
ORF1ab/nsp31254V1254VV2072VsyngtAgtT107100.09345796479-6481
ORF1ab/nsp31254V1254VV2072VsyngtAgtC10710.009345796479-6481
ORF1ab/nsp31254V1254AV2072AnonsyngTagCa25240.966479-6481
ORF1ab/nsp31254V1254AV2072AnonsyngTAgCT2510.046479-6481
ORF1ab/nsp31254V1254GV2072GnonsyngTagGa540.86479-6481
ORF1ab/nsp31254V1254GV2072GnonsyngTAgGT510.26479-6481
ORF1ab/nsp31254V1254del1V2072del1delGta-ta320.6666676479-6481
ORF1ab/nsp31254V1254del1V2072del1delGtAAt-310.3333336479-6481
ORF1ab/nsp31254V1254RV2072RnonsynGTaAGa2216479-6481
ORF1ab/nsp31254V1254SV2072SnonsynGTaTCa1116479-6481
ORF1ab/nsp31254V1254EV2072EnonsyngTagAa1116479-6481
ORF1ab/nsp31254V1254TV2072TnonsynGTaACa1116479-6481
ORF1ab/nsp31254V1254XV2072XnonsynGTATAG1116479-6481

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31254V1254delGTA---578578All0.000111
ORF1ab/nsp31254V1254delGTA---525525L.11
ORF1ab/nsp31254V1254IGtaAta414414All0.000079
ORF1ab/nsp31254V1254LGtaTta248251All0.000047
ORF1ab/nsp31254V1254LGtaCta3251All0.000001
ORF1ab/nsp31254V1254LGtaTta210210B.1.4270.010604
ORF1ab/nsp31254V1254IGtaAta112112AY.40.000174
ORF1ab/nsp31254V1254VgtAgtG96107All0.000018
ORF1ab/nsp31254V1254VgtAgtT10107All0.000002
ORF1ab/nsp31254V1254VgtAgtC1107All0
ORF1ab/nsp31254V1254IGtaAta3838B.1.1.70.000034
ORF1ab/nsp31254V1254IGtaAta3434AY.440.000207
ORF1ab/nsp31254V1254VgtAgtG2529B.1.1.70.000022
ORF1ab/nsp31254V1254VgtAgtT429B.1.1.70.000004
ORF1ab/nsp31254V1254IGtaAta2727B.1.5960.002353
ORF1ab/nsp31254V1254AgTagCa2425All0.000005
ORF1ab/nsp31254V1254AgTAgCT125All0
ORF1ab/nsp31254V1254IGtaAta2525B.1.617.20.000094
ORF1ab/nsp31254V1254IGtaAta1919AY.430.000084
ORF1ab/nsp31254V1254IGtaAta1818AY.230.001255
ORF1ab/nsp31254V1254IGtaAta1717B.1.20.00015
ORF1ab/nsp31254V1254IGtaAta1313AY.1030.000081
ORF1ab/nsp31254V1254IGtaAta1212P.1.140.000574
ORF1ab/nsp31254V1254delGTA---1111B.10.000101
ORF1ab/nsp31254V1254IGtaAta88AY.46.40.001316
ORF1ab/nsp31254V1254VgtAgtG78B.1.5250.000792
ORF1ab/nsp31254V1254VgtAgtT18B.1.5250.000113
ORF1ab/nsp31254V1254IGtaAta77AY.1000.000322
ORF1ab/nsp31254V1254IGtaAta77AY.1020.000186
ORF1ab/nsp31254V1254VgtAgtG77AY.40.000011
ORF1ab/nsp31254V1254delGTA---77B.1.1.70.000006
ORF1ab/nsp31254V1254IGtaAta77B.1.1770.000092
ORF1ab/nsp31254V1254VgtAgtG67B.1.617.20.000023
ORF1ab/nsp31254V1254VgtAgtT17B.1.617.20.000004
ORF1ab/nsp31254V1254LGtaTta77P.1.140.000335
ORF1ab/nsp31254V1254IGtaAta66B.10.000055
ORF1ab/nsp31254V1254VgtAgtG56B.10.000046
ORF1ab/nsp31254V1254VgtAgtC16B.10.000009
ORF1ab/nsp31254V1254delGTA---66B.1.1.100.006689
ORF1ab/nsp31254V1254delGTA---66B.1.177.730.003398
ORF1ab/nsp31254V1254GgTagGa45All0.000001
ORF1ab/nsp31254V1254GgTAgGT15All0
ORF1ab/nsp31254V1254IGtaAta55AY.1190.000177
ORF1ab/nsp31254V1254IGtaAta55AY.250.00003
ORF1ab/nsp31254V1254AgTagCa55AY.30.00005
ORF1ab/nsp31254V1254IGtaAta55AY.390.000124
ORF1ab/nsp31254V1254IGtaAta55AY.4.20.000108
ORF1ab/nsp31254V1254LGtaTta55AY.440.00003
ORF1ab/nsp31254V1254LGtaTta55AY.50.000103
ORF1ab/nsp31254V1254VgtAgtG44AY.1030.000025
ORF1ab/nsp31254V1254VgtAgtG44AY.250.000024
ORF1ab/nsp31254V1254AgTagCa44AY.390.000099
ORF1ab/nsp31254V1254LGtaTta44AY.40.000006
ORF1ab/nsp31254V1254IGtaAta44AY.420.000161
ORF1ab/nsp31254V1254VgtAgtG44B.1.20.000035
ORF1ab/nsp31254V1254delGTA---44P.1.140.000191
ORF1ab/nsp31254V1254del1Gta-ta23All0
ORF1ab/nsp31254V1254del1GtAAt-13All0
ORF1ab/nsp31254V1254LGtaTta33AY.250.000018
ORF1ab/nsp31254V1254VgtAgtG33AY.30.00003
ORF1ab/nsp31254V1254IGtaAta33AY.30.00003
ORF1ab/nsp31254V1254VgtAgtG33AY.690.00056
ORF1ab/nsp31254V1254VgtAgtG33AY.98.10.000145
ORF1ab/nsp31254V1254AgTagCa33B.1.3690.000856
ORF1ab/nsp31254V1254VgtAgtG33B.1.617.30.008955
ORF1ab/nsp31254V1254IGtaAta33B.1.6370.000219
ORF1ab/nsp31254V1254VgtAgtG23B.1.6370.000146
ORF1ab/nsp31254V1254VgtAgtT13B.1.6370.000073
ORF1ab/nsp31254V1254IGtaAta220.111111
ORF1ab/nsp31254V1254RGTaAGa22All0
ORF1ab/nsp31254V1254IGtaAta22AY.1170.000169
ORF1ab/nsp31254V1254IGtaAta22AY.200.000078
ORF1ab/nsp31254V1254IGtaAta22AY.330.000134
ORF1ab/nsp31254V1254AgTagCa22AY.40.000003
ORF1ab/nsp31254V1254VgtAgtG22AY.430.000009
ORF1ab/nsp31254V1254VgtAgtG22AY.450.000243
ORF1ab/nsp31254V1254delGTA---22AY.470.000062
ORF1ab/nsp31254V1254IGtaAta22B.1.1.370.000386
ORF1ab/nsp31254V1254LGtaCta22B.1.1.3890.012121
ORF1ab/nsp31254V1254AgTagCa22B.1.1.70.000002
ORF1ab/nsp31254V1254AgTagCa22B.1.20.000018
ORF1ab/nsp31254V1254LGtaTta22B.1.20.000018
ORF1ab/nsp31254V1254AgTAgCT12B.1.2340.000132
ORF1ab/nsp31254V1254AgTagCa12B.1.2340.000132
ORF1ab/nsp31254V1254IGtaAta22B.1.36.160.002849
ORF1ab/nsp31254V1254VgtAgtG22B.1.4270.000101
ORF1ab/nsp31254V1254GgTAgGT12B.1.5250.000113
ORF1ab/nsp31254V1254GgTagGa12B.1.5250.000113
ORF1ab/nsp31254V1254LGtaTta22B.1.617.20.000008
ORF1ab/nsp31254V1254VgtAgtG22B.1.6210.000177
ORF1ab/nsp31254V1254VgtAgtG22P.10.000032
ORF1ab/nsp31254V1254GgTagGa110.055556
ORF1ab/nsp31254V1254RGTaAGa110.055556
ORF1ab/nsp31254V1254SGTaTCa11All0
ORF1ab/nsp31254V1254XGTATAG11All0
ORF1ab/nsp31254V1254TGTaACa11All0
ORF1ab/nsp31254V1254EgTagAa11All0
ORF1ab/nsp31254V1254VgtAgtG11AY.1000.000046
ORF1ab/nsp31254V1254LGtaTta11AY.1030.000006
ORF1ab/nsp31254V1254XGTATAG11AY.1030.000006
ORF1ab/nsp31254V1254IGtaAta11AY.1100.000113
ORF1ab/nsp31254V1254IGtaAta11AY.1130.000142
ORF1ab/nsp31254V1254VgtAgtG11AY.1160.000287
ORF1ab/nsp31254V1254VgtAgtT11AY.130.000161
ORF1ab/nsp31254V1254VgtAgtG11AY.200.000039
ORF1ab/nsp31254V1254delGTA---11AY.250.000006
ORF1ab/nsp31254V1254IGtaAta11AY.270.000065
ORF1ab/nsp31254V1254delGTA---11AY.30.00001
ORF1ab/nsp31254V1254LGtaTta11AY.30.00001
ORF1ab/nsp31254V1254delGTA---11AY.390.000025
ORF1ab/nsp31254V1254LGtaTta11AY.390.000025
ORF1ab/nsp31254V1254delGTA---11AY.40.000002
ORF1ab/nsp31254V1254delGTA---11AY.4.50.000107
ORF1ab/nsp31254V1254VgtAgtT11AY.440.000006
ORF1ab/nsp31254V1254del1GtAAt-11AY.440.000006
ORF1ab/nsp31254V1254IGtaAta11AY.470.000031
ORF1ab/nsp31254V1254IGtaAta11AY.540.000095
ORF1ab/nsp31254V1254LGtaTta11AY.610.000105
ORF1ab/nsp31254V1254IGtaAta11AY.610.000105
ORF1ab/nsp31254V1254IGtaAta11AY.620.000436
ORF1ab/nsp31254V1254delGTA---11AY.660.00107
ORF1ab/nsp31254V1254VgtAgtG11AY.75.10.00018
ORF1ab/nsp31254V1254VgtAgtG11AY.820.001357
ORF1ab/nsp31254V1254IGtaAta11AY.9.10.000084
ORF1ab/nsp31254V1254IGtaAta11AY.9.20.000037
ORF1ab/nsp31254V1254LGtaCta11AY.98.10.000048
ORF1ab/nsp31254V1254LGtaTta11B.10.000009
ORF1ab/nsp31254V1254del1Gta-ta11B.10.000009
ORF1ab/nsp31254V1254LGtaTta11B.1.10.000018
ORF1ab/nsp31254V1254delGTA---11B.1.10.000018
ORF1ab/nsp31254V1254IGtaAta11B.1.10.000018
ORF1ab/nsp31254V1254delGTA---11B.1.1.1330.008475
ORF1ab/nsp31254V1254LGtaTta11B.1.1.2100.005714
ORF1ab/nsp31254V1254IGtaAta11B.1.1.250.000569
ORF1ab/nsp31254V1254delGTA---11B.1.1.3480.000796
ORF1ab/nsp31254V1254IGtaAta11B.1.1.4090.002833
ORF1ab/nsp31254V1254AgTagCa11B.1.1.5190.00004
ORF1ab/nsp31254V1254GgTagGa11B.1.1.70.000001
ORF1ab/nsp31254V1254IGtaAta11B.1.1.830.00271
ORF1ab/nsp31254V1254IGtaAta11B.1.1600.000031
ORF1ab/nsp31254V1254delGTA---11B.1.1770.000013
ORF1ab/nsp31254V1254delGTA---11B.1.177.510.004566
ORF1ab/nsp31254V1254delGTA---11B.1.177.620.001192
ORF1ab/nsp31254V1254delGTA---11B.1.177.70.000165
ORF1ab/nsp31254V1254AgTagCa11B.1.177.730.000566
ORF1ab/nsp31254V1254IGtaAta11B.1.177.760.002494
ORF1ab/nsp31254V1254delGTA---11B.1.177.830.001481
ORF1ab/nsp31254V1254IGtaAta11B.1.177.860.000183
ORF1ab/nsp31254V1254delGTA---11B.1.20.000009
ORF1ab/nsp31254V1254RGTaAGa11B.1.20.000009
ORF1ab/nsp31254V1254GgTagGa11B.1.2210.000071
ORF1ab/nsp31254V1254VgtAgtG11B.1.2220.001692
ORF1ab/nsp31254V1254VgtAgtT11B.1.2340.000132
ORF1ab/nsp31254V1254EgTagAa11B.1.2340.000132
ORF1ab/nsp31254V1254LGtaTta11B.1.4290.000024
ORF1ab/nsp31254V1254SGTaTCa11B.1.4290.000024
ORF1ab/nsp31254V1254IGtaAta11B.1.4520.013699
ORF1ab/nsp31254V1254IGtaAta11B.1.5070.011236
ORF1ab/nsp31254V1254IGtaAta11B.1.5260.000024
ORF1ab/nsp31254V1254VgtAgtG11B.1.5470.02439
ORF1ab/nsp31254V1254AgTagCa11B.1.5950.000261
ORF1ab/nsp31254V1254VgtAgtG11B.1.6060.006024
ORF1ab/nsp31254V1254AgTagCa11B.1.617.20.000004
ORF1ab/nsp31254V1254delGTA---11B.1.617.20.000004
ORF1ab/nsp31254V1254LGtaTta11B.1.6330.041667
ORF1ab/nsp31254V1254delGTA---11B.1.6370.000073
ORF1ab/nsp31254V1254AgTagCa11B.6.60.000889
ORF1ab/nsp31254V1254IGtaAta11C.350.000774
ORF1ab/nsp31254V1254TGTaACa11C.350.000774
ORF1ab/nsp31254V1254del1Gta-ta11D.20.000075
ORF1ab/nsp31254V1254LGtaTta11D.20.000075
ORF1ab/nsp31254V1254IGtaAta11P.10.000016
ORF1ab/nsp31254V1254IGtaAta11Q.20.000613
ORF1ab/nsp31254V1254VgtAgtG11Q.80.000165
ORF1ab/nsp31254V1254VgtAgtG11R.10.00009