CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1253 | V1253F | V2071F | nonsyn | Gtt | Ttt | 2539 | 2539 | 1 | 6476-6478 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2539 | 2539 | All | 0.000486 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1123 | 1123 | P.1 | 0.017692 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 364 | 364 | B.1.1.7 | 0.000326 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 106 | 106 | B.1.2 | 0.000933 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 96 | 96 | AY.4 | 0.000149 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 91 | 91 | AY.26 | 0.002576 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 63 | 63 | B.1.617.2 | 0.000237 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 50 | 50 | B.1.177.21 | 0.003824 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 33 | 33 | P.1.12 | 0.015973 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 32 | 32 | AY.103 | 0.000199 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 29 | 29 | AY.25 | 0.000174 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 28 | 28 | AY.102 | 0.000742 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 27 | 27 | AY.98 | 0.002133 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 26 | 26 | B.1.1.372 | 0.017906 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 22 | 22 | A.1 | 0.006201 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 20 | 20 | AY.7 | 0.00392 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 18 | 18 | B.1.1.306 | 0.007891 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 15 | 15 | B.1.177.4 | 0.003166 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 10 | 10 | AY.7.1 | 0.001127 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 8 | 8 | B.1.1.481 | 0.571429 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 5 | 5 | B.1.177.10 | 0.00439 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.218 | 0.015464 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.548 | 0.107143 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | B.1.22.1 | 0.0625 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.1.367 | 0.055556 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1253 | V1253F | Gtt | Ttt | 1 | 1 | P.1.10.1 | 0.00813 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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