CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1252

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31252E1252KE2070KnonsynGaaAaa117711760.999156473-6475
ORF1ab/nsp31252E1252KE2070KnonsynGaAAaG117710.0008496186473-6475
ORF1ab/nsp31252E1252delE2070deldelGAA---58758716473-6475
ORF1ab/nsp31252E1252AE2070AnonsyngAagCa32132116473-6475
ORF1ab/nsp31252E1252GE2070GnonsyngAagGa17417416473-6475
ORF1ab/nsp31252E1252DE2070DnonsyngaAgaC159990.6226426473-6475
ORF1ab/nsp31252E1252DE2070DnonsyngaAgaT159600.3773586473-6475
ORF1ab/nsp31252E1252EE2070EsyngaAgaG767616473-6475
ORF1ab/nsp31252E1252VE2070VnonsyngAagTa686816473-6475
ORF1ab/nsp31252E1252XE2070XnonsynGaaTaa18170.9444446473-6475
ORF1ab/nsp31252E1252XE2070XnonsynGaATaG1810.05555566473-6475
ORF1ab/nsp31252E1252QE2070QnonsynGaaCaa15140.9333336473-6475
ORF1ab/nsp31252E1252QE2070QnonsynGaACaG1510.06666676473-6475
ORF1ab/nsp31252E1252del2E2070del2delGAa--a320.6666676473-6475
ORF1ab/nsp31252E1252del2E2070del2delgAAg--310.3333336473-6475
ORF1ab/nsp31252E1252HE2070HnonsynGaACaT1116473-6475
ORF1ab/nsp31252E1252del1E2070del1delgAag-a1116473-6475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31252E1252KGaaAaa11761177All0.000225
ORF1ab/nsp31252E1252KGaAAaG11177All0
ORF1ab/nsp31252E1252KGaaAaa901901AY.40.001402
ORF1ab/nsp31252E1252delGAA---587587All0.000112
ORF1ab/nsp31252E1252delGAA---525525L.11
ORF1ab/nsp31252E1252AgAagCa321321All0.000061
ORF1ab/nsp31252E1252AgAagCa215215AY.1140.049688
ORF1ab/nsp31252E1252GgAagGa174174All0.000033
ORF1ab/nsp31252E1252DgaAgaC99159All0.000019
ORF1ab/nsp31252E1252DgaAgaT60159All0.000011
ORF1ab/nsp31252E1252EgaAgaG7676All0.000015
ORF1ab/nsp31252E1252VgAagTa6868All0.000013
ORF1ab/nsp31252E1252KGaaAaa5353B.1.617.20.0002
ORF1ab/nsp31252E1252KGaaAaa5252AY.600.04878
ORF1ab/nsp31252E1252KGaaAaa4848B.1.1.70.000043
ORF1ab/nsp31252E1252DgaAgaC3636AY.440.000219
ORF1ab/nsp31252E1252GgAagGa3434B.1.1.70.00003
ORF1ab/nsp31252E1252DgaAgaT3032B.1.1.70.000027
ORF1ab/nsp31252E1252DgaAgaC232B.1.1.70.000002
ORF1ab/nsp31252E1252GgAagGa3131AY.7.20.017338
ORF1ab/nsp31252E1252VgAagTa3030B.1.177.320.040486
ORF1ab/nsp31252E1252AgAagCa2828AY.4.20.000607
ORF1ab/nsp31252E1252AgAagCa2222B.1.1.70.00002
ORF1ab/nsp31252E1252XGaaTaa1718All0.000003
ORF1ab/nsp31252E1252XGaATaG118All0
ORF1ab/nsp31252E1252GgAagGa1818AY.40.000028
ORF1ab/nsp31252E1252AgAagCa1818B.1.20.000158
ORF1ab/nsp31252E1252KGaaAaa1717AY.250.000102
ORF1ab/nsp31252E1252EgaAgaG1717B.1.1.70.000015
ORF1ab/nsp31252E1252DgaAgaC1116AY.40.000017
ORF1ab/nsp31252E1252DgaAgaT516AY.40.000008
ORF1ab/nsp31252E1252QGaaCaa1415All0.000003
ORF1ab/nsp31252E1252QGaACaG115All0
ORF1ab/nsp31252E1252delGAA---1313B.10.000119
ORF1ab/nsp31252E1252DgaAgaT1212AY.4.20.00026
ORF1ab/nsp31252E1252GgAagGa1212B.1.6370.000877
ORF1ab/nsp31252E1252AgAagCa1111AY.1030.000068
ORF1ab/nsp31252E1252EgaAgaG1111AY.1030.000068
ORF1ab/nsp31252E1252KGaaAaa99AY.1030.000056
ORF1ab/nsp31252E1252DgaAgaC69B.1.20.000053
ORF1ab/nsp31252E1252DgaAgaT39B.1.20.000026
ORF1ab/nsp31252E1252KGaaAaa88AY.1020.000212
ORF1ab/nsp31252E1252GgAagGa88AY.200.000311
ORF1ab/nsp31252E1252KGaaAaa88AY.430.000035
ORF1ab/nsp31252E1252delGAA---88B.1.1.70.000007
ORF1ab/nsp31252E1252GgAagGa77AY.1030.000043
ORF1ab/nsp31252E1252KGaaAaa77B.1.1770.000092
ORF1ab/nsp31252E1252VgAagTa77B.1.617.20.000026
ORF1ab/nsp31252E1252GgAagGa77B.400.00255
ORF1ab/nsp31252E1252EgaAgaG66AY.440.000037
ORF1ab/nsp31252E1252GgAagGa66AY.470.000187
ORF1ab/nsp31252E1252GgAagGa66B.10.000055
ORF1ab/nsp31252E1252delGAA---66B.1.1.100.006689
ORF1ab/nsp31252E1252delGAA---66B.1.177.730.003398
ORF1ab/nsp31252E1252GgAagGa55AY.250.00003
ORF1ab/nsp31252E1252KGaaAaa55AY.260.000142
ORF1ab/nsp31252E1252AgAagCa55AY.260.000142
ORF1ab/nsp31252E1252KGaaAaa55AY.30.00005
ORF1ab/nsp31252E1252AgAagCa55AY.40.000008
ORF1ab/nsp31252E1252EgaAgaG55AY.46.40.000823
ORF1ab/nsp31252E1252XGaaTaa55B.10.000046
ORF1ab/nsp31252E1252KGaaAaa55B.1.20.000044
ORF1ab/nsp31252E1252DgaAgaC55N.50.008834
ORF1ab/nsp31252E1252QGaaCaa340.166667
ORF1ab/nsp31252E1252QGaACaG140.055556
ORF1ab/nsp31252E1252VgAagTa44AY.250.000024
ORF1ab/nsp31252E1252KGaaAaa44AY.3.10.000341
ORF1ab/nsp31252E1252DgaAgaC44AY.340.000388
ORF1ab/nsp31252E1252GgAagGa44AY.390.000099
ORF1ab/nsp31252E1252EgaAgaG44B.10.000037
ORF1ab/nsp31252E1252VgAagTa44B.1.1.1920.009238
ORF1ab/nsp31252E1252delGAA---44B.1.1.5190.000159
ORF1ab/nsp31252E1252DgaAgaC44B.1.3510.000119
ORF1ab/nsp31252E1252EgaAgaG44B.1.617.20.000015
ORF1ab/nsp31252E1252delGAA---44P.1.140.000191
ORF1ab/nsp31252E1252KGaaAaa44P.1.150.000929
ORF1ab/nsp31252E1252del2GAa--a23All0
ORF1ab/nsp31252E1252del2gAAg--13All0
ORF1ab/nsp31252E1252EgaAgaG33AY.430.000013
ORF1ab/nsp31252E1252VgAagTa33AY.430.000013
ORF1ab/nsp31252E1252KGaaAaa33AY.440.000018
ORF1ab/nsp31252E1252KGaaAaa33AY.750.000168
ORF1ab/nsp31252E1252KGaaAaa33B.1.10.000054
ORF1ab/nsp31252E1252VgAagTa33B.1.1.70.000003
ORF1ab/nsp31252E1252KGaaAaa33B.1.2210.000213
ORF1ab/nsp31252E1252DgaAgaC33B.1.2210.000213
ORF1ab/nsp31252E1252EgaAgaG33B.1.3510.000089
ORF1ab/nsp31252E1252GgAagGa33B.1.5260.000071
ORF1ab/nsp31252E1252DgaAgaC33B.1.5260.000071
ORF1ab/nsp31252E1252EgaAgaG33B.1.617.10.000387
ORF1ab/nsp31252E1252EgaAgaG22AY.10.000791
ORF1ab/nsp31252E1252GgAagGa22AY.1000.000092
ORF1ab/nsp31252E1252DgaAgaC22AY.1000.000092
ORF1ab/nsp31252E1252EgaAgaG22AY.30.00002
ORF1ab/nsp31252E1252delGAA---22AY.30.00002
ORF1ab/nsp31252E1252KGaaAaa22AY.390.000049
ORF1ab/nsp31252E1252VgAagTa22AY.40.000003
ORF1ab/nsp31252E1252delGAA---22AY.40.000003
ORF1ab/nsp31252E1252EgaAgaG22AY.40.000003
ORF1ab/nsp31252E1252KGaaAaa22AY.420.00008
ORF1ab/nsp31252E1252GgAagGa22AY.430.000009
ORF1ab/nsp31252E1252DgaAgaT22AY.430.000009
ORF1ab/nsp31252E1252delGAA---22AY.470.000062
ORF1ab/nsp31252E1252DgaAgaC22AY.50.000041
ORF1ab/nsp31252E1252KGaaAaa22AY.75.10.000361
ORF1ab/nsp31252E1252KGaaAaa22AY.98.10.000097
ORF1ab/nsp31252E1252QGaaCaa22B.1.10.000036
ORF1ab/nsp31252E1252XGaaTaa22B.1.10.000036
ORF1ab/nsp31252E1252delGAA---22B.1.10.000036
ORF1ab/nsp31252E1252GgAagGa22B.1.1.1890.003026
ORF1ab/nsp31252E1252GgAagGa22B.1.1.1920.004619
ORF1ab/nsp31252E1252VgAagTa22B.1.1.3290.007692
ORF1ab/nsp31252E1252DgaAgaC22B.1.1.330.000842
ORF1ab/nsp31252E1252KGaaAaa22B.1.1.460.008734
ORF1ab/nsp31252E1252VgAagTa22B.1.1.5210.010695
ORF1ab/nsp31252E1252XGaaTaa22B.1.1.70.000002
ORF1ab/nsp31252E1252AgAagCa22B.1.1600.000062
ORF1ab/nsp31252E1252XGaaTaa22B.1.1770.000026
ORF1ab/nsp31252E1252XGaaTaa22B.1.20.000018
ORF1ab/nsp31252E1252DgaAgaC22B.1.2340.000264
ORF1ab/nsp31252E1252GgAagGa22B.1.2400.000431
ORF1ab/nsp31252E1252KGaaAaa12B.1.4270.00005
ORF1ab/nsp31252E1252KGaAAaG12B.1.4270.00005
ORF1ab/nsp31252E1252KGaaAaa22B.1.5400.019417
ORF1ab/nsp31252E1252EgaAgaG22B.1.5610.000794
ORF1ab/nsp31252E1252GgAagGa22B.1.617.20.000008
ORF1ab/nsp31252E1252DgaAgaC12B.1.617.20.000004
ORF1ab/nsp31252E1252DgaAgaT12B.1.617.20.000004
ORF1ab/nsp31252E1252KGaaAaa22C.160.002121
ORF1ab/nsp31252E1252DgaAgaT12D.20.000075
ORF1ab/nsp31252E1252DgaAgaC12D.20.000075
ORF1ab/nsp31252E1252GgAagGa22P.10.000032
ORF1ab/nsp31252E1252DgaAgaC22P.10.000032
ORF1ab/nsp31252E1252AgAagCa22P.10.000032
ORF1ab/nsp31252E1252DgaAgaT110.055556
ORF1ab/nsp31252E1252EgaAgaG110.055556
ORF1ab/nsp31252E1252HGaACaT110.055556
ORF1ab/nsp31252E1252DgaAgaC11A.10.000282
ORF1ab/nsp31252E1252GgAagGa11A.2.20.001689
ORF1ab/nsp31252E1252QGaaCaa11A.2.20.001689
ORF1ab/nsp31252E1252DgaAgaC11A.270.001656
ORF1ab/nsp31252E1252XGaaTaa11A.30.002096
ORF1ab/nsp31252E1252GgAagGa11AD.20.000219
ORF1ab/nsp31252E1252HGaACaT11All0
ORF1ab/nsp31252E1252del1gAag-a11All0
ORF1ab/nsp31252E1252KGaaAaa11AY.1010.00049
ORF1ab/nsp31252E1252GgAagGa11AY.1020.000027
ORF1ab/nsp31252E1252XGaATaG11AY.1030.000006
ORF1ab/nsp31252E1252AgAagCa11AY.1100.000113
ORF1ab/nsp31252E1252AgAagCa11AY.1150.005208
ORF1ab/nsp31252E1252EgaAgaG11AY.1180.000063
ORF1ab/nsp31252E1252KGaaAaa11AY.200.000039
ORF1ab/nsp31252E1252EgaAgaG11AY.200.000039
ORF1ab/nsp31252E1252XGaaTaa11AY.230.00007
ORF1ab/nsp31252E1252DgaAgaT11AY.240.000431
ORF1ab/nsp31252E1252delGAA---11AY.250.000006
ORF1ab/nsp31252E1252DgaAgaC11AY.250.000006
ORF1ab/nsp31252E1252VgAagTa11AY.260.000028
ORF1ab/nsp31252E1252DgaAgaC11AY.260.000028
ORF1ab/nsp31252E1252GgAagGa11AY.280.00189
ORF1ab/nsp31252E1252VgAagTa11AY.290.000016
ORF1ab/nsp31252E1252DgaAgaC11AY.30.00001
ORF1ab/nsp31252E1252QGaaCaa11AY.330.000067
ORF1ab/nsp31252E1252DgaAgaC11AY.330.000067
ORF1ab/nsp31252E1252VgAagTa11AY.39.10.00004
ORF1ab/nsp31252E1252KGaaAaa11AY.4.20.000022
ORF1ab/nsp31252E1252GgAagGa11AY.4.20.000022
ORF1ab/nsp31252E1252delGAA---11AY.4.50.000107
ORF1ab/nsp31252E1252GgAagGa11AY.420.00004
ORF1ab/nsp31252E1252DgaAgaT11AY.420.00004
ORF1ab/nsp31252E1252GgAagGa11AY.440.000006
ORF1ab/nsp31252E1252del2GAa--a11AY.440.000006
ORF1ab/nsp31252E1252del1gAag-a11AY.440.000006
ORF1ab/nsp31252E1252EgaAgaG11AY.450.000122
ORF1ab/nsp31252E1252KGaaAaa11AY.450.000122
ORF1ab/nsp31252E1252QGaaCaa11AY.540.000095
ORF1ab/nsp31252E1252EgaAgaG11AY.570.000656
ORF1ab/nsp31252E1252AgAagCa11AY.60.000041
ORF1ab/nsp31252E1252EgaAgaG11AY.60.000041
ORF1ab/nsp31252E1252DgaAgaC11AY.610.000105
ORF1ab/nsp31252E1252delGAA---11AY.660.00107
ORF1ab/nsp31252E1252KGaaAaa11AY.670.000464
ORF1ab/nsp31252E1252KGaaAaa11AY.7.10.000113
ORF1ab/nsp31252E1252AgAagCa11AY.750.000056
ORF1ab/nsp31252E1252GgAagGa11AY.850.000427
ORF1ab/nsp31252E1252AgAagCa11AY.9.20.000037
ORF1ab/nsp31252E1252VgAagTa11AY.98.10.000048
ORF1ab/nsp31252E1252QGaaCaa11B0.000128
ORF1ab/nsp31252E1252del2GAa--a11B0.000128
ORF1ab/nsp31252E1252KGaaAaa11B0.000128
ORF1ab/nsp31252E1252AgAagCa11B.10.000009
ORF1ab/nsp31252E1252QGaaCaa11B.10.000009
ORF1ab/nsp31252E1252VgAagTa11B.10.000009
ORF1ab/nsp31252E1252KGaaAaa11B.10.000009
ORF1ab/nsp31252E1252DgaAgaC11B.10.000009
ORF1ab/nsp31252E1252DgaAgaT11B.1.10.000018
ORF1ab/nsp31252E1252delGAA---11B.1.1.1330.008475
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.1960.005714
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.2070.001182
ORF1ab/nsp31252E1252GgAagGa11B.1.1.2140.000055
ORF1ab/nsp31252E1252DgaAgaC11B.1.1.2140.000055
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.2220.000204
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.2320.001815
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.280.000311
ORF1ab/nsp31252E1252GgAagGa11B.1.1.3290.003846
ORF1ab/nsp31252E1252delGAA---11B.1.1.3480.000796
ORF1ab/nsp31252E1252GgAagGa11B.1.1.4130.006897
ORF1ab/nsp31252E1252KGaaAaa11B.1.1.4290.004608
ORF1ab/nsp31252E1252QGaaCaa11B.1.1.50.008333
ORF1ab/nsp31252E1252EgaAgaG11B.1.1.5170.006803
ORF1ab/nsp31252E1252AgAagCa11B.1.1.5190.00004
ORF1ab/nsp31252E1252DgaAgaC11B.1.1.740.00431
ORF1ab/nsp31252E1252VgAagTa11B.1.1260.001276
ORF1ab/nsp31252E1252delGAA---11B.1.1770.000013
ORF1ab/nsp31252E1252GgAagGa11B.1.177.190.001431
ORF1ab/nsp31252E1252XGaaTaa11B.1.177.310.011494
ORF1ab/nsp31252E1252KGaaAaa11B.1.177.40.000211
ORF1ab/nsp31252E1252EgaAgaG11B.1.177.50.001242
ORF1ab/nsp31252E1252delGAA---11B.1.177.510.004566
ORF1ab/nsp31252E1252KGaaAaa11B.1.177.540.000606
ORF1ab/nsp31252E1252delGAA---11B.1.177.620.001192
ORF1ab/nsp31252E1252delGAA---11B.1.177.70.000165
ORF1ab/nsp31252E1252KGaaAaa11B.1.177.810.000189
ORF1ab/nsp31252E1252delGAA---11B.1.177.830.001481
ORF1ab/nsp31252E1252AgAagCa11B.1.177.870.000728
ORF1ab/nsp31252E1252GgAagGa11B.1.20.000009
ORF1ab/nsp31252E1252del2gAAg--11B.1.20.000009
ORF1ab/nsp31252E1252VgAagTa11B.1.20.000009
ORF1ab/nsp31252E1252EgaAgaG11B.1.20.000009
ORF1ab/nsp31252E1252delGAA---11B.1.20.000009
ORF1ab/nsp31252E1252AgAagCa11B.1.221.30.000833
ORF1ab/nsp31252E1252EgaAgaG11B.1.2320.000537
ORF1ab/nsp31252E1252GgAagGa11B.1.2370.004975
ORF1ab/nsp31252E1252DgaAgaC11B.1.2400.000216
ORF1ab/nsp31252E1252KGaaAaa11B.1.2430.00007
ORF1ab/nsp31252E1252EgaAgaG11B.1.2930.0125
ORF1ab/nsp31252E1252DgaAgaT11B.1.3050.002151
ORF1ab/nsp31252E1252KGaaAaa11B.1.3110.000275
ORF1ab/nsp31252E1252VgAagTa11B.1.360.000146
ORF1ab/nsp31252E1252QGaaCaa11B.1.360.000146
ORF1ab/nsp31252E1252DgaAgaT11B.1.3820.008929
ORF1ab/nsp31252E1252EgaAgaG11B.1.4270.00005
ORF1ab/nsp31252E1252AgAagCa11B.1.4290.000024
ORF1ab/nsp31252E1252AgAagCa11B.1.438.10.000107
ORF1ab/nsp31252E1252VgAagTa11B.1.438.10.000107
ORF1ab/nsp31252E1252DgaAgaC11B.1.5250.000113
ORF1ab/nsp31252E1252AgAagCa11B.1.5260.000024
ORF1ab/nsp31252E1252VgAagTa11B.1.5260.000024
ORF1ab/nsp31252E1252GgAagGa11B.1.5760.000907
ORF1ab/nsp31252E1252GgAagGa11B.1.5880.00091
ORF1ab/nsp31252E1252KGaaAaa11B.1.5950.000261
ORF1ab/nsp31252E1252GgAagGa11B.1.5960.000087
ORF1ab/nsp31252E1252GgAagGa11B.1.617.10.000129
ORF1ab/nsp31252E1252delGAA---11B.1.617.20.000004
ORF1ab/nsp31252E1252QGaaCaa11B.1.6210.000089
ORF1ab/nsp31252E1252delGAA---11B.1.6370.000073
ORF1ab/nsp31252E1252QGaaCaa11B.400.000364
ORF1ab/nsp31252E1252VgAagTa11C.300.001727
ORF1ab/nsp31252E1252XGaaTaa11C.350.000774
ORF1ab/nsp31252E1252KGaaAaa11C.360.000911
ORF1ab/nsp31252E1252GgAagGa11C.370.000116
ORF1ab/nsp31252E1252KGaaAaa11P.10.000016
ORF1ab/nsp31252E1252KGaaAaa11P.1.140.000048
ORF1ab/nsp31252E1252AgAagCa11P.20.000187
ORF1ab/nsp31252E1252DgaAgaC11Q.30.000145