CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1249 | K1249del | K2067del | del | AAA | --- | 581 | 581 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249K | K2067K | syn | aaA | aaG | 417 | 417 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249E | K2067E | nonsyn | Aaa | Gaa | 164 | 164 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249R | K2067R | nonsyn | aAa | aGa | 73 | 73 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249N | K2067N | nonsyn | aaA | aaT | 60 | 46 | 0.766667 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249N | K2067N | nonsyn | aaA | aaC | 60 | 14 | 0.233333 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249Q | K2067Q | nonsyn | Aaa | Caa | 58 | 58 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249T | K2067T | nonsyn | aAa | aCa | 22 | 22 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249del1 | K2067del1 | del | Aaa | -aa | 13 | 13 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249I | K2067I | nonsyn | aAa | aTa | 10 | 10 | 1 | 6464-6466 |
ORF1ab/nsp3 | 1249 | K1249del2 | K2067del2 | del | AAa | --a | 1 | 1 | 1 | 6464-6466 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 581 | 581 | All | 0.000111 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 525 | 525 | L.1 | 1 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 417 | 417 | All | 0.00008 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 191 | 191 | B.1.195 | 0.959799 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 164 | 164 | All | 0.000031 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 103 | 103 | B.1.2 | 0.000907 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 73 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 46 | 60 | All | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 14 | 60 | All | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 55 | 55 | B.1.36.24 | 0.339506 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 33 | 33 | AY.3 | 0.000328 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1249 | K1249del2 | AAa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1249 | K1249T | aAa | aCa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249del2 | AAa | --a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.598 | 0.016949 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1249 | K1249R | aAa | aGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249del | AAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1249 | K1249K | aaA | aaG | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1249 | K1249I | aAa | aTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1249 | K1249E | Aaa | Gaa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1249 | K1249del1 | Aaa | -aa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1249 | K1249Q | Aaa | Caa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1249 | K1249N | aaA | aaT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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