CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1249

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31249K1249delK2067deldelAAA---58158116464-6466
ORF1ab/nsp31249K1249KK2067KsynaaAaaG41741716464-6466
ORF1ab/nsp31249K1249EK2067EnonsynAaaGaa16416416464-6466
ORF1ab/nsp31249K1249RK2067RnonsynaAaaGa737316464-6466
ORF1ab/nsp31249K1249NK2067NnonsynaaAaaT60460.7666676464-6466
ORF1ab/nsp31249K1249NK2067NnonsynaaAaaC60140.2333336464-6466
ORF1ab/nsp31249K1249QK2067QnonsynAaaCaa585816464-6466
ORF1ab/nsp31249K1249TK2067TnonsynaAaaCa222216464-6466
ORF1ab/nsp31249K1249del1K2067del1delAaa-aa131316464-6466
ORF1ab/nsp31249K1249IK2067InonsynaAaaTa101016464-6466
ORF1ab/nsp31249K1249del2K2067del2delAAa--a1116464-6466

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31249K1249delAAA---581581All0.000111
ORF1ab/nsp31249K1249delAAA---525525L.11
ORF1ab/nsp31249K1249KaaAaaG417417All0.00008
ORF1ab/nsp31249K1249KaaAaaG191191B.1.1950.959799
ORF1ab/nsp31249K1249EAaaGaa164164All0.000031
ORF1ab/nsp31249K1249KaaAaaG103103B.1.20.000907
ORF1ab/nsp31249K1249RaAaaGa7373All0.000014
ORF1ab/nsp31249K1249NaaAaaT4660All0.000009
ORF1ab/nsp31249K1249NaaAaaC1460All0.000003
ORF1ab/nsp31249K1249QAaaCaa5858All0.000011
ORF1ab/nsp31249K1249EAaaGaa5555B.1.36.240.339506
ORF1ab/nsp31249K1249RaAaaGa3737AY.250.000223
ORF1ab/nsp31249K1249EAaaGaa3333AY.30.000328
ORF1ab/nsp31249K1249NaaAaaT3333B.1.3510.000981
ORF1ab/nsp31249K1249KaaAaaG3030B.10.000275
ORF1ab/nsp31249K1249TaAaaCa2222All0.000004
ORF1ab/nsp31249K1249QAaaCaa1818AY.250.000108
ORF1ab/nsp31249K1249KaaAaaG1616B.1.1.70.000014
ORF1ab/nsp31249K1249EAaaGaa1414B.1.1.70.000013
ORF1ab/nsp31249K1249del1Aaa-aa1313All0.000002
ORF1ab/nsp31249K1249delAAA---1313B.10.000119
ORF1ab/nsp31249K1249QAaaCaa1313B.1.1.70.000012
ORF1ab/nsp31249K1249KaaAaaG1212C.370.001393
ORF1ab/nsp31249K1249IaAaaTa1010All0.000002
ORF1ab/nsp31249K1249KaaAaaG99B.1.1600.000281
ORF1ab/nsp31249K1249KaaAaaG99P.10.000142
ORF1ab/nsp31249K1249KaaAaaG88B.1.1.5190.000318
ORF1ab/nsp31249K1249TaAaaCa77AY.250.000042
ORF1ab/nsp31249K1249TaAaaCa77AY.440.000043
ORF1ab/nsp31249K1249delAAA---77B.1.1.70.000006
ORF1ab/nsp31249K1249delAAA---77B.1.5250.000792
ORF1ab/nsp31249K1249KaaAaaG77B.1.617.20.000026
ORF1ab/nsp31249K1249delAAA---66B.1.1.100.006689
ORF1ab/nsp31249K1249EAaaGaa66B.1.1.2140.000333
ORF1ab/nsp31249K1249EAaaGaa66B.1.617.20.000023
ORF1ab/nsp31249K1249EAaaGaa55AY.40.000008
ORF1ab/nsp31249K1249KaaAaaG44AY.1020.000106
ORF1ab/nsp31249K1249KaaAaaG44AY.40.000006
ORF1ab/nsp31249K1249NaaAaaC34AY.40.000005
ORF1ab/nsp31249K1249NaaAaaT14AY.40.000002
ORF1ab/nsp31249K1249delAAA---44B.1.1.5190.000159
ORF1ab/nsp31249K1249IaAaaTa44B.1.1770.000053
ORF1ab/nsp31249K1249EAaaGaa44B.1.20.000035
ORF1ab/nsp31249K1249NaaAaaC33AY.1030.000019
ORF1ab/nsp31249K1249KaaAaaG33AY.30.00003
ORF1ab/nsp31249K1249RaAaaGa33AY.40.000005
ORF1ab/nsp31249K1249EAaaGaa33AY.750.000168
ORF1ab/nsp31249K1249RaAaaGa33B.10.000027
ORF1ab/nsp31249K1249QAaaCaa33B.1.1.630.001157
ORF1ab/nsp31249K1249RaAaaGa33B.1.1.70.000003
ORF1ab/nsp31249K1249NaaAaaT23B.1.1.70.000002
ORF1ab/nsp31249K1249NaaAaaC13B.1.1.70.000001
ORF1ab/nsp31249K1249QAaaCaa33B.1.2340.000396
ORF1ab/nsp31249K1249QAaaCaa33B.1.617.20.000011
ORF1ab/nsp31249K1249QAaaCaa22AY.1030.000012
ORF1ab/nsp31249K1249EAaaGaa22AY.1050.001286
ORF1ab/nsp31249K1249QAaaCaa22AY.1210.000271
ORF1ab/nsp31249K1249RaAaaGa22AY.260.000057
ORF1ab/nsp31249K1249RaAaaGa22AY.390.000049
ORF1ab/nsp31249K1249TaAaaCa22AY.40.000003
ORF1ab/nsp31249K1249IaAaaTa22AY.40.000003
ORF1ab/nsp31249K1249QAaaCaa22AY.40.000003
ORF1ab/nsp31249K1249delAAA---22AY.40.000003
ORF1ab/nsp31249K1249KaaAaaG22AY.430.000009
ORF1ab/nsp31249K1249KaaAaaG22AY.440.000012
ORF1ab/nsp31249K1249RaAaaGa22AY.460.000208
ORF1ab/nsp31249K1249delAAA---22AY.470.000062
ORF1ab/nsp31249K1249EAaaGaa22AY.60.000082
ORF1ab/nsp31249K1249KaaAaaG22B0.000256
ORF1ab/nsp31249K1249del1Aaa-aa22B.10.000018
ORF1ab/nsp31249K1249delAAA---22B.1.10.000036
ORF1ab/nsp31249K1249EAaaGaa22B.1.10.000036
ORF1ab/nsp31249K1249KaaAaaG22B.1.10.000036
ORF1ab/nsp31249K1249RaAaaGa22B.1.1.2160.001781
ORF1ab/nsp31249K1249EAaaGaa22B.1.1.5190.000079
ORF1ab/nsp31249K1249EAaaGaa22B.1.1600.000062
ORF1ab/nsp31249K1249NaaAaaT22B.1.1600.000062
ORF1ab/nsp31249K1249TaAaaCa22B.1.1770.000026
ORF1ab/nsp31249K1249EAaaGaa22B.1.36.80.002
ORF1ab/nsp31249K1249RaAaaGa22B.1.4290.000047
ORF1ab/nsp31249K1249TaAaaCa22B.1.5610.000794
ORF1ab/nsp31249K1249del1Aaa-aa22B.1.617.20.000008
ORF1ab/nsp31249K1249EAaaGaa22D.20.00015
ORF1ab/nsp31249K1249RaAaaGa22P.10.000032
ORF1ab/nsp31249K1249EAaaGaa11A.270.001656
ORF1ab/nsp31249K1249del2AAa--a11All0
ORF1ab/nsp31249K1249EAaaGaa11AY.1000.000046
ORF1ab/nsp31249K1249del1Aaa-aa11AY.1030.000006
ORF1ab/nsp31249K1249EAaaGaa11AY.1030.000006
ORF1ab/nsp31249K1249RaAaaGa11AY.1030.000006
ORF1ab/nsp31249K1249KaaAaaG11AY.1030.000006
ORF1ab/nsp31249K1249QAaaCaa11AY.1070.000466
ORF1ab/nsp31249K1249RaAaaGa11AY.1110.000183
ORF1ab/nsp31249K1249KaaAaaG11AY.1130.000142
ORF1ab/nsp31249K1249EAaaGaa11AY.1170.000085
ORF1ab/nsp31249K1249NaaAaaC11AY.1170.000085
ORF1ab/nsp31249K1249EAaaGaa11AY.120.20.001285
ORF1ab/nsp31249K1249RaAaaGa11AY.200.000039
ORF1ab/nsp31249K1249KaaAaaG11AY.200.000039
ORF1ab/nsp31249K1249RaAaaGa11AY.230.00007
ORF1ab/nsp31249K1249NaaAaaC11AY.250.000006
ORF1ab/nsp31249K1249EAaaGaa11AY.250.000006
ORF1ab/nsp31249K1249delAAA---11AY.250.000006
ORF1ab/nsp31249K1249KaaAaaG11AY.250.000006
ORF1ab/nsp31249K1249del1Aaa-aa11AY.250.000006
ORF1ab/nsp31249K1249RaAaaGa11AY.290.000016
ORF1ab/nsp31249K1249RaAaaGa11AY.330.000067
ORF1ab/nsp31249K1249KaaAaaG11AY.390.000025
ORF1ab/nsp31249K1249delAAA---11AY.390.000025
ORF1ab/nsp31249K1249KaaAaaG11AY.39.10.00004
ORF1ab/nsp31249K1249delAAA---11AY.4.50.000107
ORF1ab/nsp31249K1249QAaaCaa11AY.430.000004
ORF1ab/nsp31249K1249EAaaGaa11AY.430.000004
ORF1ab/nsp31249K1249NaaAaaC11AY.430.000004
ORF1ab/nsp31249K1249RaAaaGa11AY.440.000006
ORF1ab/nsp31249K1249EAaaGaa11AY.440.000006
ORF1ab/nsp31249K1249del1Aaa-aa11AY.440.000006
ORF1ab/nsp31249K1249QAaaCaa11AY.440.000006
ORF1ab/nsp31249K1249EAaaGaa11AY.450.000122
ORF1ab/nsp31249K1249del1Aaa-aa11AY.470.000031
ORF1ab/nsp31249K1249EAaaGaa11AY.480.000465
ORF1ab/nsp31249K1249QAaaCaa11AY.590.00053
ORF1ab/nsp31249K1249delAAA---11AY.660.00107
ORF1ab/nsp31249K1249del1Aaa-aa11AY.790.001211
ORF1ab/nsp31249K1249RaAaaGa11AY.90.000068
ORF1ab/nsp31249K1249QAaaCaa11AY.98.10.000048
ORF1ab/nsp31249K1249NaaAaaT11B0.000128
ORF1ab/nsp31249K1249del1Aaa-aa11B0.000128
ORF1ab/nsp31249K1249QAaaCaa11B.10.000009
ORF1ab/nsp31249K1249NaaAaaT11B.10.000009
ORF1ab/nsp31249K1249EAaaGaa11B.10.000009
ORF1ab/nsp31249K1249QAaaCaa11B.1.10.000018
ORF1ab/nsp31249K1249RaAaaGa11B.1.10.000018
ORF1ab/nsp31249K1249NaaAaaC11B.1.10.000018
ORF1ab/nsp31249K1249NaaAaaC11B.1.1.10.000327
ORF1ab/nsp31249K1249delAAA---11B.1.1.1330.008475
ORF1ab/nsp31249K1249TaAaaCa11B.1.1.1890.001513
ORF1ab/nsp31249K1249EAaaGaa11B.1.1.280.000311
ORF1ab/nsp31249K1249KaaAaaG11B.1.1.2840.000107
ORF1ab/nsp31249K1249delAAA---11B.1.1.3480.000796
ORF1ab/nsp31249K1249IaAaaTa11B.1.1.3620.005618
ORF1ab/nsp31249K1249EAaaGaa11B.1.1.390.00051
ORF1ab/nsp31249K1249RaAaaGa11B.1.1.3970.002252
ORF1ab/nsp31249K1249NaaAaaT11B.1.1.470.005348
ORF1ab/nsp31249K1249QAaaCaa11B.1.1.5190.00004
ORF1ab/nsp31249K1249IaAaaTa11B.1.1.70.000001
ORF1ab/nsp31249K1249NaaAaaT11B.1.1.700.000341
ORF1ab/nsp31249K1249TaAaaCa11B.1.1390.000733
ORF1ab/nsp31249K1249QAaaCaa11B.1.1570.002985
ORF1ab/nsp31249K1249delAAA---11B.1.1770.000013
ORF1ab/nsp31249K1249RaAaaGa11B.1.1770.000013
ORF1ab/nsp31249K1249EAaaGaa11B.1.1770.000013
ORF1ab/nsp31249K1249RaAaaGa11B.1.177.210.000076
ORF1ab/nsp31249K1249delAAA---11B.1.177.510.004566
ORF1ab/nsp31249K1249QAaaCaa11B.1.177.540.000606
ORF1ab/nsp31249K1249delAAA---11B.1.177.620.001192
ORF1ab/nsp31249K1249delAAA---11B.1.177.70.000165
ORF1ab/nsp31249K1249NaaAaaT11B.1.177.750.001041
ORF1ab/nsp31249K1249delAAA---11B.1.177.830.001481
ORF1ab/nsp31249K1249IaAaaTa11B.1.20.000009
ORF1ab/nsp31249K1249RaAaaGa11B.1.20.000009
ORF1ab/nsp31249K1249delAAA---11B.1.20.000009
ORF1ab/nsp31249K1249del2AAa--a11B.1.20.000009
ORF1ab/nsp31249K1249del1Aaa-aa11B.1.20.000009
ORF1ab/nsp31249K1249NaaAaaC11B.1.2430.00007
ORF1ab/nsp31249K1249EAaaGaa11B.1.2580.000067
ORF1ab/nsp31249K1249KaaAaaG11B.1.3190.003049
ORF1ab/nsp31249K1249EAaaGaa11B.1.3510.00003
ORF1ab/nsp31249K1249EAaaGaa11B.1.360.000146
ORF1ab/nsp31249K1249EAaaGaa11B.1.36.100.004785
ORF1ab/nsp31249K1249NaaAaaT11B.1.4270.00005
ORF1ab/nsp31249K1249RaAaaGa11B.1.4270.00005
ORF1ab/nsp31249K1249KaaAaaG11B.1.4270.00005
ORF1ab/nsp31249K1249NaaAaaC11B.1.4290.000024
ORF1ab/nsp31249K1249EAaaGaa11B.1.4290.000024
ORF1ab/nsp31249K1249NaaAaaT11B.1.4730.019231
ORF1ab/nsp31249K1249EAaaGaa11B.1.5600.00463
ORF1ab/nsp31249K1249EAaaGaa11B.1.5640.000426
ORF1ab/nsp31249K1249KaaAaaG11B.1.5650.00081
ORF1ab/nsp31249K1249KaaAaaG11B.1.5980.016949
ORF1ab/nsp31249K1249QAaaCaa11B.1.6090.000479
ORF1ab/nsp31249K1249KaaAaaG11B.1.6090.000479
ORF1ab/nsp31249K1249del1Aaa-aa11B.1.617.10.000129
ORF1ab/nsp31249K1249RaAaaGa11B.1.617.20.000004
ORF1ab/nsp31249K1249delAAA---11B.1.617.20.000004
ORF1ab/nsp31249K1249EAaaGaa11B.1.6370.000073
ORF1ab/nsp31249K1249KaaAaaG11B.40.002208
ORF1ab/nsp31249K1249EAaaGaa11B.400.000364
ORF1ab/nsp31249K1249IaAaaTa11D.20.000075
ORF1ab/nsp31249K1249EAaaGaa11P.1.100.000269
ORF1ab/nsp31249K1249del1Aaa-aa11Q.30.000145
ORF1ab/nsp31249K1249QAaaCaa11R.10.00009
ORF1ab/nsp31249K1249NaaAaaT11R.10.00009