CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1247

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31247N1247SN2065SnonsynaAtaGt8688670.9988486458-6460
ORF1ab/nsp31247N1247SN2065SnonsynaATaGC86810.001152076458-6460
ORF1ab/nsp31247N1247delN2065deldelAAT---57757716458-6460
ORF1ab/nsp31247N1247DN2065DnonsynAatGat11711716458-6460
ORF1ab/nsp31247N1247TN2065TnonsynaAtaCt11111116458-6460
ORF1ab/nsp31247N1247NN2065NsynaaTaaC686816458-6460
ORF1ab/nsp31247N1247KN2065KnonsynaaTaaA750.7142866458-6460
ORF1ab/nsp31247N1247KN2065KnonsynaaTaaG720.2857146458-6460
ORF1ab/nsp31247N1247HN2065HnonsynAatCat6616458-6460
ORF1ab/nsp31247N1247YN2065YnonsynAatTat5516458-6460
ORF1ab/nsp31247N1247del1N2065del1delaaTaa-520.46458-6460
ORF1ab/nsp31247N1247del1N2065del1delAat-at520.46458-6460
ORF1ab/nsp31247N1247del1N2065del1delAAT-GC510.26458-6460
ORF1ab/nsp31247N1247IN2065InonsynaAtaTt4416458-6460
ORF1ab/nsp31247N1247EN2065EnonsynAaTGaA1116458-6460
ORF1ab/nsp31247N1247VN2065VnonsynAATGTA1116458-6460
ORF1ab/nsp31247N1247FN2065FnonsynAAtTTt1116458-6460

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31247N1247SaAtaGt867868All0.000166
ORF1ab/nsp31247N1247SaATaGC1868All0
ORF1ab/nsp31247N1247delAAT---577577All0.00011
ORF1ab/nsp31247N1247delAAT---525525L.11
ORF1ab/nsp31247N1247SaAtaGt144144B.1.1.5190.005718
ORF1ab/nsp31247N1247DAatGat117117All0.000022
ORF1ab/nsp31247N1247SaAtaGt112112B.1.1.70.0001
ORF1ab/nsp31247N1247TaAtaCt111111All0.000021
ORF1ab/nsp31247N1247SaAtaGt107107AY.430.000474
ORF1ab/nsp31247N1247NaaTaaC6868All0.000013
ORF1ab/nsp31247N1247TaAtaCt5454B.1.1.70.000048
ORF1ab/nsp31247N1247DAatGat4242AY.240.018103
ORF1ab/nsp31247N1247SaAtaGt4041B.1.20.000352
ORF1ab/nsp31247N1247SaATaGC141B.1.20.000009
ORF1ab/nsp31247N1247SaAtaGt3232AY.290.000505
ORF1ab/nsp31247N1247SaAtaGt3232B.1.1770.000421
ORF1ab/nsp31247N1247DAatGat3131AY.390.000766
ORF1ab/nsp31247N1247SaAtaGt3030B.1.351.50.017986
ORF1ab/nsp31247N1247TaAtaCt2525B.1.6370.001827
ORF1ab/nsp31247N1247SaAtaGt2222AY.40.000034
ORF1ab/nsp31247N1247NaaTaaC2020B.1.1.70.000018
ORF1ab/nsp31247N1247SaAtaGt1919B.1.617.20.000072
ORF1ab/nsp31247N1247SaAtaGt1818AY.1030.000112
ORF1ab/nsp31247N1247SaAtaGt1818AY.250.000108
ORF1ab/nsp31247N1247SaAtaGt1717P.1.160.00636
ORF1ab/nsp31247N1247SaAtaGt1515B.1.3510.000446
ORF1ab/nsp31247N1247SaAtaGt1414AY.470.000435
ORF1ab/nsp31247N1247SaAtaGt1313AY.30.000129
ORF1ab/nsp31247N1247delAAT---1313B.10.000119
ORF1ab/nsp31247N1247SaAtaGt1313B.1.4290.000306
ORF1ab/nsp31247N1247SaAtaGt1313P.10.000205
ORF1ab/nsp31247N1247SaAtaGt1212B.1.1600.000374
ORF1ab/nsp31247N1247TaAtaCt1010AY.250.00006
ORF1ab/nsp31247N1247NaaTaaC1010AY.30.000099
ORF1ab/nsp31247N1247SaAtaGt1010AY.440.000061
ORF1ab/nsp31247N1247SaAtaGt1010B.1.1490.034247
ORF1ab/nsp31247N1247SaAtaGt99AY.50.000186
ORF1ab/nsp31247N1247SaAtaGt88AY.570.005249
ORF1ab/nsp31247N1247SaAtaGt88B.1.1.250.004548
ORF1ab/nsp31247N1247DAatGat88B.1.1.70.000007
ORF1ab/nsp31247N1247KaaTaaA57All0.000001
ORF1ab/nsp31247N1247KaaTaaG27All0
ORF1ab/nsp31247N1247delAAT---77B.1.1.70.000006
ORF1ab/nsp31247N1247HAatCat66All0.000001
ORF1ab/nsp31247N1247SaAtaGt66AY.140.000528
ORF1ab/nsp31247N1247SaAtaGt66AY.9.20.00022
ORF1ab/nsp31247N1247SaAtaGt66B.10.000055
ORF1ab/nsp31247N1247delAAT---66B.1.1.100.006689
ORF1ab/nsp31247N1247SaAtaGt66B.1.2340.000792
ORF1ab/nsp31247N1247SaAtaGt66B.1.5260.000141
ORF1ab/nsp31247N1247YAatTat55All0.000001
ORF1ab/nsp31247N1247del1Aat-at25All0
ORF1ab/nsp31247N1247del1aaTaa-25All0
ORF1ab/nsp31247N1247del1AAT-GC15All0
ORF1ab/nsp31247N1247NaaTaaC55AY.40.000008
ORF1ab/nsp31247N1247NaaTaaC55AY.440.00003
ORF1ab/nsp31247N1247TaAtaCt55B.10.000046
ORF1ab/nsp31247N1247DAatGat55B.1.617.20.000019
ORF1ab/nsp31247N1247IaAtaTt44All0.000001
ORF1ab/nsp31247N1247DAatGat44AY.40.000006
ORF1ab/nsp31247N1247SaAtaGt44AY.540.000381
ORF1ab/nsp31247N1247SaAtaGt44B0.000511
ORF1ab/nsp31247N1247delAAT---44B.1.1.5190.000159
ORF1ab/nsp31247N1247DAatGat44B.1.360.000584
ORF1ab/nsp31247N1247SaAtaGt33AY.1200.000112
ORF1ab/nsp31247N1247NaaTaaC33AY.140.000264
ORF1ab/nsp31247N1247SaAtaGt33AY.200.000117
ORF1ab/nsp31247N1247DAatGat33AY.30.00003
ORF1ab/nsp31247N1247SaAtaGt33AY.390.000074
ORF1ab/nsp31247N1247HAatCat33AY.4.50.000322
ORF1ab/nsp31247N1247NaaTaaC33AY.430.000013
ORF1ab/nsp31247N1247SaAtaGt33AY.7.10.000338
ORF1ab/nsp31247N1247SaAtaGt33B.1.10.000054
ORF1ab/nsp31247N1247SaAtaGt33B.1.1.330.001263
ORF1ab/nsp31247N1247NaaTaaC33B.1.20.000026
ORF1ab/nsp31247N1247KaaTaaA33B.1.2430.000209
ORF1ab/nsp31247N1247NaaTaaC33B.1.2430.000209
ORF1ab/nsp31247N1247TaAtaCt33B.1.2430.000209
ORF1ab/nsp31247N1247TaAtaCt33B.1.617.20.000011
ORF1ab/nsp31247N1247NaaTaaC33B.1.617.20.000011
ORF1ab/nsp31247N1247SaAtaGt33B.1.6210.000266
ORF1ab/nsp31247N1247SaAtaGt33B.1.6370.000219
ORF1ab/nsp31247N1247SaAtaGt33C.370.000348
ORF1ab/nsp31247N1247KaaTaaA220.111111
ORF1ab/nsp31247N1247SaAtaGt22AY.1000.000092
ORF1ab/nsp31247N1247SaAtaGt22AY.1130.000285
ORF1ab/nsp31247N1247SaAtaGt22AY.1160.000574
ORF1ab/nsp31247N1247SaAtaGt22AY.1170.000169
ORF1ab/nsp31247N1247SaAtaGt22AY.130.000322
ORF1ab/nsp31247N1247SaAtaGt22AY.16.10.00094
ORF1ab/nsp31247N1247DAatGat22AY.250.000012
ORF1ab/nsp31247N1247SaAtaGt22AY.260.000057
ORF1ab/nsp31247N1247DAatGat22AY.260.000057
ORF1ab/nsp31247N1247SaAtaGt22AY.29.10.000441
ORF1ab/nsp31247N1247delAAT---22AY.40.000003
ORF1ab/nsp31247N1247SaAtaGt22AY.4.20.000043
ORF1ab/nsp31247N1247SaAtaGt22AY.420.00008
ORF1ab/nsp31247N1247SaAtaGt22AY.460.000208
ORF1ab/nsp31247N1247delAAT---22AY.470.000062
ORF1ab/nsp31247N1247YAatTat22AY.540.000191
ORF1ab/nsp31247N1247SaAtaGt22AY.750.000112
ORF1ab/nsp31247N1247SaAtaGt22AY.90.000135
ORF1ab/nsp31247N1247TaAtaCt22AY.910.001461
ORF1ab/nsp31247N1247SaAtaGt22AY.990.002099
ORF1ab/nsp31247N1247delAAT---22B.1.10.000036
ORF1ab/nsp31247N1247SaAtaGt22B.1.1.280.000622
ORF1ab/nsp31247N1247IaAtaTt22B.1.1.70.000002
ORF1ab/nsp31247N1247SaAtaGt22B.1.177.810.000379
ORF1ab/nsp31247N1247DAatGat22B.1.20.000018
ORF1ab/nsp31247N1247SaAtaGt22B.1.2430.000139
ORF1ab/nsp31247N1247SaAtaGt22B.1.360.000292
ORF1ab/nsp31247N1247SaAtaGt22B.1.438.10.000215
ORF1ab/nsp31247N1247SaAtaGt22B.1.5240.002813
ORF1ab/nsp31247N1247SaAtaGt22B.1.6090.000959
ORF1ab/nsp31247N1247SaAtaGt22N.50.003534
ORF1ab/nsp31247N1247DAatGat22P.10.000032
ORF1ab/nsp31247N1247DAatGat110.055556
ORF1ab/nsp31247N1247EAaTGaA110.055556
ORF1ab/nsp31247N1247SaAtaGt11A0.000387
ORF1ab/nsp31247N1247SaAtaGt11AE.30.032258
ORF1ab/nsp31247N1247SaAtaGt11AE.80.000489
ORF1ab/nsp31247N1247EAaTGaA11All0
ORF1ab/nsp31247N1247VAATGTA11All0
ORF1ab/nsp31247N1247FAAtTTt11All0
ORF1ab/nsp31247N1247TaAtaCt11AY.1020.000027
ORF1ab/nsp31247N1247TaAtaCt11AY.1030.000006
ORF1ab/nsp31247N1247SaAtaGt11AY.116.10.000311
ORF1ab/nsp31247N1247NaaTaaC11AY.1170.000085
ORF1ab/nsp31247N1247SaAtaGt11AY.1190.000035
ORF1ab/nsp31247N1247delAAT---11AY.140.000088
ORF1ab/nsp31247N1247KaaTaaG11AY.200.000039
ORF1ab/nsp31247N1247TaAtaCt11AY.23.10.000417
ORF1ab/nsp31247N1247SaAtaGt11AY.240.000431
ORF1ab/nsp31247N1247delAAT---11AY.250.000006
ORF1ab/nsp31247N1247YAatTat11AY.250.000006
ORF1ab/nsp31247N1247NaaTaaC11AY.260.000028
ORF1ab/nsp31247N1247SaAtaGt11AY.270.000065
ORF1ab/nsp31247N1247IaAtaTt11AY.290.000016
ORF1ab/nsp31247N1247DAatGat11AY.3.10.000085
ORF1ab/nsp31247N1247SaAtaGt11AY.3.10.000085
ORF1ab/nsp31247N1247SaAtaGt11AY.320.000532
ORF1ab/nsp31247N1247DAatGat11AY.330.000067
ORF1ab/nsp31247N1247NaaTaaC11AY.340.000097
ORF1ab/nsp31247N1247TaAtaCt11AY.370.000316
ORF1ab/nsp31247N1247SaAtaGt11AY.370.000316
ORF1ab/nsp31247N1247delAAT---11AY.390.000025
ORF1ab/nsp31247N1247NaaTaaC11AY.390.000025
ORF1ab/nsp31247N1247TaAtaCt11AY.40.000002
ORF1ab/nsp31247N1247delAAT---11AY.4.50.000107
ORF1ab/nsp31247N1247SaAtaGt11AY.4.50.000107
ORF1ab/nsp31247N1247del1aaTaa-11AY.430.000004
ORF1ab/nsp31247N1247del1Aat-at11AY.440.000006
ORF1ab/nsp31247N1247VAATGTA11AY.440.000006
ORF1ab/nsp31247N1247DAatGat11AY.440.000006
ORF1ab/nsp31247N1247NaaTaaC11AY.450.000122
ORF1ab/nsp31247N1247DAatGat11AY.450.000122
ORF1ab/nsp31247N1247SaAtaGt11AY.46.40.000165
ORF1ab/nsp31247N1247NaaTaaC11AY.50.000021
ORF1ab/nsp31247N1247DAatGat11AY.50.000021
ORF1ab/nsp31247N1247NaaTaaC11AY.510.000909
ORF1ab/nsp31247N1247DAatGat11AY.550.000917
ORF1ab/nsp31247N1247SaAtaGt11AY.560.001605
ORF1ab/nsp31247N1247SaAtaGt11AY.60.000041
ORF1ab/nsp31247N1247SaAtaGt11AY.610.000105
ORF1ab/nsp31247N1247delAAT---11AY.660.00107
ORF1ab/nsp31247N1247SaAtaGt11AY.70.000196
ORF1ab/nsp31247N1247DAatGat11AY.7.10.000113
ORF1ab/nsp31247N1247DAatGat11AY.710.000475
ORF1ab/nsp31247N1247SaAtaGt11AY.730.000665
ORF1ab/nsp31247N1247SaAtaGt11AY.740.000116
ORF1ab/nsp31247N1247TaAtaCt11AY.90.000068
ORF1ab/nsp31247N1247SaAtaGt11AY.920.000287
ORF1ab/nsp31247N1247delAAT---11AY.990.001049
ORF1ab/nsp31247N1247SaAtaGt11AY.99.20.000092
ORF1ab/nsp31247N1247del1AAT-GC11B0.000128
ORF1ab/nsp31247N1247NaaTaaC11B.10.000009
ORF1ab/nsp31247N1247delAAT---11B.1.1.1330.008475
ORF1ab/nsp31247N1247SaAtaGt11B.1.1.2690.001353
ORF1ab/nsp31247N1247SaAtaGt11B.1.1.3170.000412
ORF1ab/nsp31247N1247delAAT---11B.1.1.3480.000796
ORF1ab/nsp31247N1247DAatGat11B.1.1.5190.00004
ORF1ab/nsp31247N1247SaAtaGt11B.1.1.5250.005464
ORF1ab/nsp31247N1247SaAtaGt11B.1.1.630.000386
ORF1ab/nsp31247N1247KaaTaaG11B.1.1.70.000001
ORF1ab/nsp31247N1247FAAtTTt11B.1.1.70.000001
ORF1ab/nsp31247N1247HAatCat11B.1.1.70.000001
ORF1ab/nsp31247N1247YAatTat11B.1.1.70.000001
ORF1ab/nsp31247N1247delAAT---11B.1.1770.000013
ORF1ab/nsp31247N1247delAAT---11B.1.177.510.004566
ORF1ab/nsp31247N1247SaAtaGt11B.1.177.570.000281
ORF1ab/nsp31247N1247delAAT---11B.1.177.620.001192
ORF1ab/nsp31247N1247delAAT---11B.1.177.70.000165
ORF1ab/nsp31247N1247delAAT---11B.1.177.830.001481
ORF1ab/nsp31247N1247TaAtaCt11B.1.177.870.000728
ORF1ab/nsp31247N1247del1Aat-at11B.1.20.000009
ORF1ab/nsp31247N1247HAatCat11B.1.20.000009
ORF1ab/nsp31247N1247delAAT---11B.1.20.000009
ORF1ab/nsp31247N1247SaAtaGt11B.1.2060.000816
ORF1ab/nsp31247N1247HAatCat11B.1.258.140.00098
ORF1ab/nsp31247N1247SaAtaGt11B.1.258.170.000104
ORF1ab/nsp31247N1247SaAtaGt11B.1.2600.003344
ORF1ab/nsp31247N1247SaAtaGt11B.1.3490.000715
ORF1ab/nsp31247N1247SaAtaGt11B.1.351.20.000303
ORF1ab/nsp31247N1247IaAtaTt11B.1.3560.001727
ORF1ab/nsp31247N1247SaAtaGt11B.1.36.10.00114
ORF1ab/nsp31247N1247SaAtaGt11B.1.3670.000792
ORF1ab/nsp31247N1247SaAtaGt11B.1.3850.010638
ORF1ab/nsp31247N1247DAatGat11B.1.3990.001934
ORF1ab/nsp31247N1247SaAtaGt11B.1.4000.000429
ORF1ab/nsp31247N1247SaAtaGt11B.1.4260.001009
ORF1ab/nsp31247N1247TaAtaCt11B.1.4290.000024
ORF1ab/nsp31247N1247SaAtaGt11B.1.4990.00105
ORF1ab/nsp31247N1247NaaTaaC11B.1.5260.000024
ORF1ab/nsp31247N1247DAatGat11B.1.5260.000024
ORF1ab/nsp31247N1247TaAtaCt11B.1.5300.007143
ORF1ab/nsp31247N1247del1aaTaa-11B.1.5950.000261
ORF1ab/nsp31247N1247SaAtaGt11B.1.5960.000087
ORF1ab/nsp31247N1247NaaTaaC11B.1.5960.000087
ORF1ab/nsp31247N1247delAAT---11B.1.617.20.000004
ORF1ab/nsp31247N1247YAatTat11B.1.617.20.000004
ORF1ab/nsp31247N1247NaaTaaC11C.350.000774
ORF1ab/nsp31247N1247NaaTaaC11C.370.000116
ORF1ab/nsp31247N1247NaaTaaC11D.20.000075
ORF1ab/nsp31247N1247SaAtaGt11D.20.000075
ORF1ab/nsp31247N1247delAAT---11P.10.000016
ORF1ab/nsp31247N1247SaAtaGt11P.1.120.000484
ORF1ab/nsp31247N1247SaAtaGt11P.1.140.000048
ORF1ab/nsp31247N1247SaAtaGt11Q.80.000165
ORF1ab/nsp31247N1247SaAtaGt11R.10.00009