CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1246

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31246C1246delC2064deldelTGT---57857816455-6457
ORF1ab/nsp31246C1246YC2064YnonsyntGttAt14414416455-6457
ORF1ab/nsp31246C1246CC2064CsyntgTtgC767616455-6457
ORF1ab/nsp31246C1246RC2064RnonsynTgtCgt53520.9811326455-6457
ORF1ab/nsp31246C1246RC2064RnonsynTgTAgA5310.01886796455-6457
ORF1ab/nsp31246C1246FC2064FnonsyntGttTt222216455-6457
ORF1ab/nsp31246C1246SC2064SnonsynTgtAgt151516455-6457
ORF1ab/nsp31246C1246GC2064GnonsynTgtGgt870.8756455-6457
ORF1ab/nsp31246C1246GC2064GnonsynTgTGgG810.1256455-6457
ORF1ab/nsp31246C1246XC2064XnonsyntgTtgA530.66455-6457
ORF1ab/nsp31246C1246XC2064XnonsyntGTtAA520.46455-6457
ORF1ab/nsp31246C1246WC2064WnonsyntgTtgG3316455-6457
ORF1ab/nsp31246C1246del1C2064del1delTgt-gt2216455-6457
ORF1ab/nsp31246C1246VC2064VnonsynTGtGTt210.56455-6457
ORF1ab/nsp31246C1246VC2064VnonsynTGTGTA210.56455-6457
ORF1ab/nsp31246C1246HC2064HnonsynTGtCAt1116455-6457
ORF1ab/nsp31246C1246DC2064DnonsynTGtGAt1116455-6457
ORF1ab/nsp31246C1246LC2064LnonsyntGTtTA1116455-6457
ORF1ab/nsp31246C1246EC2064EnonsynTGTGAA1116455-6457

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31246C1246delTGT---578578All0.000111
ORF1ab/nsp31246C1246delTGT---525525L.11
ORF1ab/nsp31246C1246YtGttAt144144All0.000028
ORF1ab/nsp31246C1246CtgTtgC7676All0.000015
ORF1ab/nsp31246C1246RTgtCgt5253All0.00001
ORF1ab/nsp31246C1246RTgTAgA153All0
ORF1ab/nsp31246C1246YtGttAt3030B.1.20.000264
ORF1ab/nsp31246C1246FtGttTt2222All0.000004
ORF1ab/nsp31246C1246RTgtCgt1919AY.50.000392
ORF1ab/nsp31246C1246YtGttAt1919B.1.617.20.000072
ORF1ab/nsp31246C1246YtGttAt1616B.1.1600.000499
ORF1ab/nsp31246C1246STgtAgt1515All0.000003
ORF1ab/nsp31246C1246delTGT---1313B.10.000119
ORF1ab/nsp31246C1246CtgTtgC1313B.1.4270.000656
ORF1ab/nsp31246C1246RTgtCgt1212AY.40.000019
ORF1ab/nsp31246C1246YtGttAt1111B.1.1.70.00001
ORF1ab/nsp31246C1246YtGttAt1111B.1.1260.014031
ORF1ab/nsp31246C1246FtGttTt99B.1.1.70.000008
ORF1ab/nsp31246C1246GTgtGgt78All0.000001
ORF1ab/nsp31246C1246GTgTGgG18All0
ORF1ab/nsp31246C1246CtgTtgC88AY.40.000012
ORF1ab/nsp31246C1246YtGttAt88AY.40.000012
ORF1ab/nsp31246C1246delTGT---77B.1.1.70.000006
ORF1ab/nsp31246C1246YtGttAt66AY.1020.000159
ORF1ab/nsp31246C1246delTGT---66B.1.1.100.006689
ORF1ab/nsp31246C1246YtGttAt66B.1.1.330.002525
ORF1ab/nsp31246C1246XtgTtgA35All0.000001
ORF1ab/nsp31246C1246XtGTtAA25All0
ORF1ab/nsp31246C1246CtgTtgC55AY.30.00005
ORF1ab/nsp31246C1246CtgTtgC55AY.4.2.10.000745
ORF1ab/nsp31246C1246YtGttAt55AY.46.60.000361
ORF1ab/nsp31246C1246YtGttAt55B.10.000046
ORF1ab/nsp31246C1246CtgTtgC55B.10.000046
ORF1ab/nsp31246C1246STgtAgt55B.1.1.70.000004
ORF1ab/nsp31246C1246RTgtCgt55B.1.1.70.000004
ORF1ab/nsp31246C1246CtgTtgC55B.1.1.70.000004
ORF1ab/nsp31246C1246CtgTtgC55B.1.20.000044
ORF1ab/nsp31246C1246CtgTtgC44B.1.1.2220.000816
ORF1ab/nsp31246C1246delTGT---44B.1.1.5190.000159
ORF1ab/nsp31246C1246GTgtGgt44B.1.1.70.000004
ORF1ab/nsp31246C1246XtgTtgA230.111111
ORF1ab/nsp31246C1246XtGTtAA130.055556
ORF1ab/nsp31246C1246WtgTtgG33All0.000001
ORF1ab/nsp31246C1246STgtAgt33AY.40.000005
ORF1ab/nsp31246C1246FtGttTt33AY.40.000005
ORF1ab/nsp31246C1246CtgTtgC33AY.4.20.000065
ORF1ab/nsp31246C1246YtGttAt33AY.440.000018
ORF1ab/nsp31246C1246CtgTtgC33B.1.617.20.000011
ORF1ab/nsp31246C1246GTgtGgt120.055556
ORF1ab/nsp31246C1246GTgTGgG120.055556
ORF1ab/nsp31246C1246del1Tgt-gt22All0
ORF1ab/nsp31246C1246VTGTGTA12All0
ORF1ab/nsp31246C1246VTGtGTt12All0
ORF1ab/nsp31246C1246RTgtCgt22AY.1170.000169
ORF1ab/nsp31246C1246CtgTtgC22AY.250.000012
ORF1ab/nsp31246C1246delTGT---22AY.40.000003
ORF1ab/nsp31246C1246delTGT---22AY.470.000062
ORF1ab/nsp31246C1246YtGttAt22AY.740.000231
ORF1ab/nsp31246C1246delTGT---22B.1.10.000036
ORF1ab/nsp31246C1246VTGTGTA12B.1.1.70.000001
ORF1ab/nsp31246C1246VTGtGTt12B.1.1.70.000001
ORF1ab/nsp31246C1246del1Tgt-gt22B.1.20.000018
ORF1ab/nsp31246C1246YtGttAt22B.1.2220.003384
ORF1ab/nsp31246C1246CtgTtgC22B.1.258.170.000208
ORF1ab/nsp31246C1246YtGttAt22B.1.5640.000852
ORF1ab/nsp31246C1246YtGttAt22B.1.5960.000174
ORF1ab/nsp31246C1246RTgtCgt22B.1.617.20.000008
ORF1ab/nsp31246C1246WtgTtgG110.055556
ORF1ab/nsp31246C1246RTgTAgA110.055556
ORF1ab/nsp31246C1246YtGttAt110.055556
ORF1ab/nsp31246C1246STgtAgt110.055556
ORF1ab/nsp31246C1246CtgTtgC11A.10.000282
ORF1ab/nsp31246C1246STgtAgt11A.20.000662
ORF1ab/nsp31246C1246HTGtCAt11All0
ORF1ab/nsp31246C1246LtGTtTA11All0
ORF1ab/nsp31246C1246ETGTGAA11All0
ORF1ab/nsp31246C1246DTGtGAt11All0
ORF1ab/nsp31246C1246YtGttAt11AY.10.000396
ORF1ab/nsp31246C1246CtgTtgC11AY.1000.000046
ORF1ab/nsp31246C1246delTGT---11AY.140.000088
ORF1ab/nsp31246C1246delTGT---11AY.250.000006
ORF1ab/nsp31246C1246FtGttTt11AY.250.000006
ORF1ab/nsp31246C1246FtGttTt11AY.290.000016
ORF1ab/nsp31246C1246YtGttAt11AY.30.00001
ORF1ab/nsp31246C1246delTGT---11AY.390.000025
ORF1ab/nsp31246C1246YtGttAt11AY.390.000025
ORF1ab/nsp31246C1246FtGttTt11AY.390.000025
ORF1ab/nsp31246C1246RTgtCgt11AY.39.10.00004
ORF1ab/nsp31246C1246STgtAgt11AY.4.20.000022
ORF1ab/nsp31246C1246delTGT---11AY.4.50.000107
ORF1ab/nsp31246C1246FtGttTt11AY.420.00004
ORF1ab/nsp31246C1246YtGttAt11AY.420.00004
ORF1ab/nsp31246C1246CtgTtgC11AY.430.000004
ORF1ab/nsp31246C1246GTgtGgt11AY.430.000004
ORF1ab/nsp31246C1246WtgTtgG11AY.440.000006
ORF1ab/nsp31246C1246RTgtCgt11AY.440.000006
ORF1ab/nsp31246C1246STgtAgt11AY.440.000006
ORF1ab/nsp31246C1246YtGttAt11AY.450.000122
ORF1ab/nsp31246C1246YtGttAt11AY.460.000104
ORF1ab/nsp31246C1246YtGttAt11AY.46.20.000635
ORF1ab/nsp31246C1246RTgtCgt11AY.620.000436
ORF1ab/nsp31246C1246delTGT---11AY.660.00107
ORF1ab/nsp31246C1246FtGttTt11AY.750.000056
ORF1ab/nsp31246C1246CtgTtgC11AY.90.000068
ORF1ab/nsp31246C1246WtgTtgG11AY.980.000079
ORF1ab/nsp31246C1246delTGT---11AY.990.001049
ORF1ab/nsp31246C1246delTGT---11B0.000128
ORF1ab/nsp31246C1246FtGttTt11B.10.000009
ORF1ab/nsp31246C1246RTgtCgt11B.10.000009
ORF1ab/nsp31246C1246XtgTtgA11B.1.10.000018
ORF1ab/nsp31246C1246STgtAgt11B.1.10.000018
ORF1ab/nsp31246C1246RTgtCgt11B.1.10.000018
ORF1ab/nsp31246C1246CtgTtgC11B.1.10.000018
ORF1ab/nsp31246C1246delTGT---11B.1.1.1330.008475
ORF1ab/nsp31246C1246RTgtCgt11B.1.1.2140.000055
ORF1ab/nsp31246C1246YtGttAt11B.1.1.280.000311
ORF1ab/nsp31246C1246delTGT---11B.1.1.3480.000796
ORF1ab/nsp31246C1246RTgtCgt11B.1.1.4340.000349
ORF1ab/nsp31246C1246YtGttAt11B.1.1.5190.00004
ORF1ab/nsp31246C1246YtGttAt11B.1.1.630.000386
ORF1ab/nsp31246C1246ETGTGAA11B.1.1.70.000001
ORF1ab/nsp31246C1246LtGTtTA11B.1.1.70.000001
ORF1ab/nsp31246C1246DTGtGAt11B.1.1.70.000001
ORF1ab/nsp31246C1246XtGTtAA11B.1.1.70.000001
ORF1ab/nsp31246C1246CtgTtgC11B.1.1770.000013
ORF1ab/nsp31246C1246delTGT---11B.1.1770.000013
ORF1ab/nsp31246C1246delTGT---11B.1.177.510.004566
ORF1ab/nsp31246C1246CtgTtgC11B.1.177.600.000218
ORF1ab/nsp31246C1246delTGT---11B.1.177.620.001192
ORF1ab/nsp31246C1246GTgtGgt11B.1.177.690.001484
ORF1ab/nsp31246C1246delTGT---11B.1.177.70.000165
ORF1ab/nsp31246C1246CtgTtgC11B.1.177.80.000752
ORF1ab/nsp31246C1246delTGT---11B.1.177.830.001481
ORF1ab/nsp31246C1246delTGT---11B.1.20.000009
ORF1ab/nsp31246C1246FtGttTt11B.1.20.000009
ORF1ab/nsp31246C1246STgtAgt11B.1.20.000009
ORF1ab/nsp31246C1246RTgtCgt11B.1.20.000009
ORF1ab/nsp31246C1246CtgTtgC11B.1.230.006061
ORF1ab/nsp31246C1246RTgtCgt11B.1.2580.000067
ORF1ab/nsp31246C1246CtgTtgC11B.1.3510.00003
ORF1ab/nsp31246C1246YtGttAt11B.1.360.000146
ORF1ab/nsp31246C1246CtgTtgC11B.1.360.000146
ORF1ab/nsp31246C1246RTgtCgt11B.1.36.360.000602
ORF1ab/nsp31246C1246CtgTtgC11B.1.3690.000285
ORF1ab/nsp31246C1246YtGttAt11B.1.4270.00005
ORF1ab/nsp31246C1246YtGttAt11B.1.4290.000024
ORF1ab/nsp31246C1246RTgtCgt11B.1.5260.000024
ORF1ab/nsp31246C1246YtGttAt11B.1.5770.000687
ORF1ab/nsp31246C1246FtGttTt11B.1.6090.000479
ORF1ab/nsp31246C1246delTGT---11B.1.617.20.000004
ORF1ab/nsp31246C1246FtGttTt11B.1.617.20.000004
ORF1ab/nsp31246C1246YtGttAt11B.1.6210.000089
ORF1ab/nsp31246C1246CtgTtgC11B.1.6330.041667
ORF1ab/nsp31246C1246CtgTtgC11B.6.60.000889
ORF1ab/nsp31246C1246HTGtCAt11C.350.000774
ORF1ab/nsp31246C1246RTgtCgt11D.20.000075
ORF1ab/nsp31246C1246CtgTtgC11N.30.005814
ORF1ab/nsp31246C1246delTGT---11P.10.000016
ORF1ab/nsp31246C1246FtGttTt11P.20.000187
ORF1ab/nsp31246C1246CtgTtgC11P.30.001595
ORF1ab/nsp31246C1246STgtAgt11Q.30.000145