CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1245

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31245E1245delE2063deldelGAG---57857816452-6454
ORF1ab/nsp31245E1245GE2063GnonsyngAggGg2082070.9951926452-6454
ORF1ab/nsp31245E1245GE2063GnonsyngAGgGT20810.004807696452-6454
ORF1ab/nsp31245E1245DE2063DnonsyngaGgaT1871830.978616452-6454
ORF1ab/nsp31245E1245DE2063DnonsyngaGgaC18740.02139046452-6454
ORF1ab/nsp31245E1245KE2063KnonsynGagAag1541530.9935066452-6454
ORF1ab/nsp31245E1245KE2063KnonsynGaGAaA15410.006493516452-6454
ORF1ab/nsp31245E1245EE2063EsyngaGgaA888816452-6454
ORF1ab/nsp31245E1245VE2063VnonsyngAggTg686816452-6454
ORF1ab/nsp31245E1245AE2063AnonsyngAggCg292916452-6454
ORF1ab/nsp31245E1245XE2063XnonsynGagTag171716452-6454
ORF1ab/nsp31245E1245QE2063QnonsynGagCag4416452-6454
ORF1ab/nsp31245E1245del1E2063del1delgaGga-2216452-6454
ORF1ab/nsp31245E1245LE2063LnonsynGAgCTg210.56452-6454
ORF1ab/nsp31245E1245FE2063FnonsynGAGTTT210.56452-6454
ORF1ab/nsp31245E1245LE2063LnonsynGAgTTg210.56452-6454
ORF1ab/nsp31245E1245FE2063FnonsynGAGTTC210.56452-6454
ORF1ab/nsp31245E1245YE2063YnonsynGaGTaT210.56452-6454
ORF1ab/nsp31245E1245YE2063YnonsynGaGTaC210.56452-6454
ORF1ab/nsp31245E1245IE2063InonsynGAGATT210.56452-6454
ORF1ab/nsp31245E1245IE2063InonsynGAGATC210.56452-6454
ORF1ab/nsp31245E1245NE2063NnonsynGaGAaT210.56452-6454
ORF1ab/nsp31245E1245NE2063NnonsynGaGAaC210.56452-6454
ORF1ab/nsp31245E1245ME2063MnonsynGAgATg1116452-6454

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31245E1245delGAG---578578All0.000111
ORF1ab/nsp31245E1245delGAG---525525L.11
ORF1ab/nsp31245E1245GgAggGg207208All0.00004
ORF1ab/nsp31245E1245GgAGgGT1208All0
ORF1ab/nsp31245E1245DgaGgaT183187All0.000035
ORF1ab/nsp31245E1245DgaGgaC4187All0.000001
ORF1ab/nsp31245E1245KGagAag153154All0.000029
ORF1ab/nsp31245E1245KGaGAaA1154All0
ORF1ab/nsp31245E1245KGagAag115115AY.240.049569
ORF1ab/nsp31245E1245EgaGgaA8888All0.000017
ORF1ab/nsp31245E1245VgAggTg6868All0.000013
ORF1ab/nsp31245E1245VgAggTg4949AY.200.001904
ORF1ab/nsp31245E1245GgAggGg4242B.1.1.5180.265823
ORF1ab/nsp31245E1245GgAggGg3535AY.440.000213
ORF1ab/nsp31245E1245GgAggGg3333B.1.20.000291
ORF1ab/nsp31245E1245EgaGgaA3232B.1.1.70.000029
ORF1ab/nsp31245E1245AgAggCg2929All0.000006
ORF1ab/nsp31245E1245GgAggGg2424AY.40.000037
ORF1ab/nsp31245E1245GgAggGg2222AY.420.000885
ORF1ab/nsp31245E1245DgaGgaT2222B.1.1770.00029
ORF1ab/nsp31245E1245DgaGgaT2121AY.440.000128
ORF1ab/nsp31245E1245DgaGgaT2121B.1.1.70.000019
ORF1ab/nsp31245E1245DgaGgaT1919B.1.617.20.000072
ORF1ab/nsp31245E1245DgaGgaT1818AY.40.000028
ORF1ab/nsp31245E1245XGagTag1717All0.000003
ORF1ab/nsp31245E1245DgaGgaT1616AY.430.000071
ORF1ab/nsp31245E1245EgaGgaA1313AY.40.00002
ORF1ab/nsp31245E1245delGAG---1313B.10.000119
ORF1ab/nsp31245E1245DgaGgaT99AY.250.000054
ORF1ab/nsp31245E1245GgAggGg99B.1.1.5190.000357
ORF1ab/nsp31245E1245delGAG---88B.1.1.70.000007
ORF1ab/nsp31245E1245AgAggCg77AY.40.000011
ORF1ab/nsp31245E1245GgAggGg77B.10.000064
ORF1ab/nsp31245E1245XGagTag77B.10.000064
ORF1ab/nsp31245E1245DgaGgaT77B.1.10.000127
ORF1ab/nsp31245E1245VgAggTg77B.1.20.000062
ORF1ab/nsp31245E1245EgaGgaA66AY.250.000036
ORF1ab/nsp31245E1245delGAG---66B.1.1.100.006689
ORF1ab/nsp31245E1245KGagAag66B.1.1.70.000005
ORF1ab/nsp31245E1245KGagAag66B.1.1260.007653
ORF1ab/nsp31245E1245AgAggCg66B.1.4290.000141
ORF1ab/nsp31245E1245EgaGgaA66B.1.5750.00182
ORF1ab/nsp31245E1245EgaGgaA66C.370.000696
ORF1ab/nsp31245E1245KGagAag56P.10.000079
ORF1ab/nsp31245E1245KGaGAaA16P.10.000016
ORF1ab/nsp31245E1245AgAggCg55B.1.1.70.000004
ORF1ab/nsp31245E1245EgaGgaA55B.1.1770.000066
ORF1ab/nsp31245E1245GgAggGg45B.1.617.20.000015
ORF1ab/nsp31245E1245GgAGgGT15B.1.617.20.000004
ORF1ab/nsp31245E1245QGagCag44All0.000001
ORF1ab/nsp31245E1245DgaGgaT44AY.390.000099
ORF1ab/nsp31245E1245DgaGgaT34B.10.000027
ORF1ab/nsp31245E1245DgaGgaC14B.10.000009
ORF1ab/nsp31245E1245delGAG---44B.1.1.5190.000159
ORF1ab/nsp31245E1245QGagCag44B.1.1.70.000004
ORF1ab/nsp31245E1245EgaGgaA44B.1.617.20.000015
ORF1ab/nsp31245E1245EgaGgaA33AY.30.00003
ORF1ab/nsp31245E1245KGagAag33AY.30.00003
ORF1ab/nsp31245E1245VgAggTg33AY.4.20.000065
ORF1ab/nsp31245E1245GgAggGg33AY.450.000365
ORF1ab/nsp31245E1245GgAggGg33AY.850.001282
ORF1ab/nsp31245E1245DgaGgaT33B.1.20.000026
ORF1ab/nsp31245E1245DgaGgaT33B.1.5260.000071
ORF1ab/nsp31245E1245GgAggGg33P.10.000047
ORF1ab/nsp31245E1245del1gaGga-22All0
ORF1ab/nsp31245E1245IGAGATC12All0
ORF1ab/nsp31245E1245YGaGTaT12All0
ORF1ab/nsp31245E1245LGAgCTg12All0
ORF1ab/nsp31245E1245FGAGTTT12All0
ORF1ab/nsp31245E1245IGAGATT12All0
ORF1ab/nsp31245E1245YGaGTaC12All0
ORF1ab/nsp31245E1245LGAgTTg12All0
ORF1ab/nsp31245E1245FGAGTTC12All0
ORF1ab/nsp31245E1245NGaGAaC12All0
ORF1ab/nsp31245E1245NGaGAaT12All0
ORF1ab/nsp31245E1245DgaGgaT22AY.1020.000053
ORF1ab/nsp31245E1245DgaGgaT22AY.1030.000012
ORF1ab/nsp31245E1245KGagAag22AY.40.000003
ORF1ab/nsp31245E1245delGAG---22AY.40.000003
ORF1ab/nsp31245E1245DgaGgaT22AY.450.000243
ORF1ab/nsp31245E1245delGAG---22AY.470.000062
ORF1ab/nsp31245E1245KGagAag22AY.50.000041
ORF1ab/nsp31245E1245DgaGgaT22AY.740.000231
ORF1ab/nsp31245E1245DgaGgaT22AY.770.002255
ORF1ab/nsp31245E1245delGAG---22B.1.10.000036
ORF1ab/nsp31245E1245XGagTag22B.1.10.000036
ORF1ab/nsp31245E1245VgAggTg22B.1.1.70.000002
ORF1ab/nsp31245E1245NGaGAaT12B.1.1.70.000001
ORF1ab/nsp31245E1245IGAGATT12B.1.1.70.000001
ORF1ab/nsp31245E1245IGAGATC12B.1.1.70.000001
ORF1ab/nsp31245E1245NGaGAaC12B.1.1.70.000001
ORF1ab/nsp31245E1245YGaGTaC12B.1.1.70.000001
ORF1ab/nsp31245E1245YGaGTaT12B.1.1.70.000001
ORF1ab/nsp31245E1245FGAGTTC12B.1.1.70.000001
ORF1ab/nsp31245E1245FGAGTTT12B.1.1.70.000001
ORF1ab/nsp31245E1245del1gaGga-22B.1.20.000018
ORF1ab/nsp31245E1245EgaGgaA22B.1.20.000018
ORF1ab/nsp31245E1245GgAggGg22B.1.4000.000858
ORF1ab/nsp31245E1245KGagAag22B.1.4270.000101
ORF1ab/nsp31245E1245GgAggGg22B.1.5250.000226
ORF1ab/nsp31245E1245KGagAag22B.1.617.20.000008
ORF1ab/nsp31245E1245GgAggGg22P.20.000373
ORF1ab/nsp31245E1245KGagAag110.055556
ORF1ab/nsp31245E1245XGagTag11A0.000387
ORF1ab/nsp31245E1245EgaGgaA11A.10.000282
ORF1ab/nsp31245E1245DgaGgaT11A.40.012821
ORF1ab/nsp31245E1245DgaGgaT11AD.20.000219
ORF1ab/nsp31245E1245MGAgATg11All0
ORF1ab/nsp31245E1245AgAggCg11AY.1000.000046
ORF1ab/nsp31245E1245GgAggGg11AY.1020.000027
ORF1ab/nsp31245E1245DgaGgaT11AY.1040.001984
ORF1ab/nsp31245E1245EgaGgaA11AY.1060.000335
ORF1ab/nsp31245E1245GgAggGg11AY.1090.00074
ORF1ab/nsp31245E1245AgAggCg11AY.1100.000113
ORF1ab/nsp31245E1245AgAggCg11AY.116.10.000311
ORF1ab/nsp31245E1245VgAggTg11AY.1170.000085
ORF1ab/nsp31245E1245DgaGgaT11AY.1180.000063
ORF1ab/nsp31245E1245DgaGgaT11AY.1190.000035
ORF1ab/nsp31245E1245EgaGgaA11AY.120.000316
ORF1ab/nsp31245E1245delGAG---11AY.140.000088
ORF1ab/nsp31245E1245DgaGgaT11AY.160.00038
ORF1ab/nsp31245E1245DgaGgaC11AY.230.00007
ORF1ab/nsp31245E1245GgAggGg11AY.240.000431
ORF1ab/nsp31245E1245GgAggGg11AY.250.000006
ORF1ab/nsp31245E1245KGagAag11AY.250.000006
ORF1ab/nsp31245E1245delGAG---11AY.250.000006
ORF1ab/nsp31245E1245DgaGgaT11AY.260.000028
ORF1ab/nsp31245E1245GgAggGg11AY.260.000028
ORF1ab/nsp31245E1245DgaGgaT11AY.290.000016
ORF1ab/nsp31245E1245VgAggTg11AY.30.00001
ORF1ab/nsp31245E1245AgAggCg11AY.30.00001
ORF1ab/nsp31245E1245DgaGgaT11AY.30.00001
ORF1ab/nsp31245E1245DgaGgaT11AY.300.000396
ORF1ab/nsp31245E1245EgaGgaA11AY.340.000097
ORF1ab/nsp31245E1245delGAG---11AY.390.000025
ORF1ab/nsp31245E1245KGagAag11AY.390.000025
ORF1ab/nsp31245E1245GgAggGg11AY.390.000025
ORF1ab/nsp31245E1245XGagTag11AY.40.000002
ORF1ab/nsp31245E1245AgAggCg11AY.4.20.000022
ORF1ab/nsp31245E1245delGAG---11AY.4.50.000107
ORF1ab/nsp31245E1245KGagAag11AY.420.00004
ORF1ab/nsp31245E1245GgAggGg11AY.430.000004
ORF1ab/nsp31245E1245EgaGgaA11AY.440.000006
ORF1ab/nsp31245E1245LGAgCTg11AY.440.000006
ORF1ab/nsp31245E1245AgAggCg11AY.440.000006
ORF1ab/nsp31245E1245XGagTag11AY.440.000006
ORF1ab/nsp31245E1245DgaGgaC11AY.46.10.001027
ORF1ab/nsp31245E1245DgaGgaT11AY.46.40.000165
ORF1ab/nsp31245E1245DgaGgaT11AY.50.000021
ORF1ab/nsp31245E1245GgAggGg11AY.5.30.000337
ORF1ab/nsp31245E1245VgAggTg11AY.530.000288
ORF1ab/nsp31245E1245AgAggCg11AY.550.000917
ORF1ab/nsp31245E1245DgaGgaT11AY.590.00053
ORF1ab/nsp31245E1245KGagAag11AY.600.000938
ORF1ab/nsp31245E1245EgaGgaA11AY.610.000105
ORF1ab/nsp31245E1245delGAG---11AY.660.00107
ORF1ab/nsp31245E1245KGagAag11AY.670.000464
ORF1ab/nsp31245E1245KGagAag11AY.750.000056
ORF1ab/nsp31245E1245EgaGgaA11AY.75.10.00018
ORF1ab/nsp31245E1245DgaGgaT11AY.90.000068
ORF1ab/nsp31245E1245KGagAag11AY.9.10.000084
ORF1ab/nsp31245E1245VgAggTg11AY.920.000287
ORF1ab/nsp31245E1245DgaGgaT11AY.98.10.000048
ORF1ab/nsp31245E1245delGAG---11AY.990.001049
ORF1ab/nsp31245E1245DgaGgaT11B0.000128
ORF1ab/nsp31245E1245EgaGgaA11B.10.000009
ORF1ab/nsp31245E1245GgAggGg11B.1.10.000018
ORF1ab/nsp31245E1245delGAG---11B.1.1.1330.008475
ORF1ab/nsp31245E1245DgaGgaT11B.1.1.2140.000055
ORF1ab/nsp31245E1245AgAggCg11B.1.1.2220.000204
ORF1ab/nsp31245E1245delGAG---11B.1.1.3480.000796
ORF1ab/nsp31245E1245GgAggGg11B.1.1.3720.000689
ORF1ab/nsp31245E1245AgAggCg11B.1.1.4640.001473
ORF1ab/nsp31245E1245LGAgTTg11B.1.1.70.000001
ORF1ab/nsp31245E1245MGAgATg11B.1.1.70.000001
ORF1ab/nsp31245E1245XGagTag11B.1.1.70.000001
ORF1ab/nsp31245E1245GgAggGg11B.1.1.70.000001
ORF1ab/nsp31245E1245DgaGgaT11B.1.1600.000031
ORF1ab/nsp31245E1245delGAG---11B.1.1770.000013
ORF1ab/nsp31245E1245DgaGgaT11B.1.177.40.000211
ORF1ab/nsp31245E1245delGAG---11B.1.177.510.004566
ORF1ab/nsp31245E1245delGAG---11B.1.177.620.001192
ORF1ab/nsp31245E1245AgAggCg11B.1.177.70.000165
ORF1ab/nsp31245E1245delGAG---11B.1.177.70.000165
ORF1ab/nsp31245E1245delGAG---11B.1.177.830.001481
ORF1ab/nsp31245E1245DgaGgaT11B.1.1800.05
ORF1ab/nsp31245E1245delGAG---11B.1.20.000009
ORF1ab/nsp31245E1245XGagTag11B.1.20.000009
ORF1ab/nsp31245E1245GgAggGg11B.1.2210.000071
ORF1ab/nsp31245E1245DgaGgaT11B.1.2210.000071
ORF1ab/nsp31245E1245GgAggGg11B.1.2340.000132
ORF1ab/nsp31245E1245VgAggTg11B.1.2340.000132
ORF1ab/nsp31245E1245AgAggCg11B.1.2580.000067
ORF1ab/nsp31245E1245XGagTag11B.1.3130.006579
ORF1ab/nsp31245E1245EgaGgaA11B.1.3360.002439
ORF1ab/nsp31245E1245DgaGgaT11B.1.3510.00003
ORF1ab/nsp31245E1245GgAggGg11B.1.3510.00003
ORF1ab/nsp31245E1245KGagAag11B.1.3830.009009
ORF1ab/nsp31245E1245KGagAag11B.1.4290.000024
ORF1ab/nsp31245E1245DgaGgaT11B.1.4700.001404
ORF1ab/nsp31245E1245DgaGgaT11B.1.5250.000113
ORF1ab/nsp31245E1245DgaGgaC11B.1.5960.000087
ORF1ab/nsp31245E1245delGAG---11B.1.617.20.000004
ORF1ab/nsp31245E1245VgAggTg11B.1.617.20.000004
ORF1ab/nsp31245E1245GgAggGg11B.1.6210.000089
ORF1ab/nsp31245E1245XGagTag11B.1.6230.000536
ORF1ab/nsp31245E1245XGagTag11B.6.60.000889
ORF1ab/nsp31245E1245DgaGgaT11C.360.000911
ORF1ab/nsp31245E1245VgAggTg11C.370.000116
ORF1ab/nsp31245E1245GgAggGg11C.370.000116
ORF1ab/nsp31245E1245EgaGgaA11C.37.10.002618
ORF1ab/nsp31245E1245EgaGgaA11P.10.000016
ORF1ab/nsp31245E1245DgaGgaT11P.10.000016
ORF1ab/nsp31245E1245delGAG---11P.10.000016
ORF1ab/nsp31245E1245DgaGgaT11P.1.150.000232