CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1245 | E1245del | E2063del | del | GAG | --- | 578 | 578 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245G | E2063G | nonsyn | gAg | gGg | 208 | 207 | 0.995192 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245G | E2063G | nonsyn | gAG | gGT | 208 | 1 | 0.00480769 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245D | E2063D | nonsyn | gaG | gaT | 187 | 183 | 0.97861 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245D | E2063D | nonsyn | gaG | gaC | 187 | 4 | 0.0213904 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245K | E2063K | nonsyn | Gag | Aag | 154 | 153 | 0.993506 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245K | E2063K | nonsyn | GaG | AaA | 154 | 1 | 0.00649351 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245E | E2063E | syn | gaG | gaA | 88 | 88 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245V | E2063V | nonsyn | gAg | gTg | 68 | 68 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245A | E2063A | nonsyn | gAg | gCg | 29 | 29 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245X | E2063X | nonsyn | Gag | Tag | 17 | 17 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245Q | E2063Q | nonsyn | Gag | Cag | 4 | 4 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245del1 | E2063del1 | del | gaG | ga- | 2 | 2 | 1 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245L | E2063L | nonsyn | GAg | CTg | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245F | E2063F | nonsyn | GAG | TTT | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245L | E2063L | nonsyn | GAg | TTg | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245F | E2063F | nonsyn | GAG | TTC | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245Y | E2063Y | nonsyn | GaG | TaT | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245Y | E2063Y | nonsyn | GaG | TaC | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245I | E2063I | nonsyn | GAG | ATT | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245I | E2063I | nonsyn | GAG | ATC | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245N | E2063N | nonsyn | GaG | AaT | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245N | E2063N | nonsyn | GaG | AaC | 2 | 1 | 0.5 | 6452-6454 |
ORF1ab/nsp3 | 1245 | E1245M | E2063M | nonsyn | GAg | ATg | 1 | 1 | 1 | 6452-6454 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 578 | 578 | All | 0.000111 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 525 | 525 | L.1 | 1 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 207 | 208 | All | 0.00004 |
ORF1ab/nsp3 | 1245 | E1245G | gAG | gGT | 1 | 208 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 183 | 187 | All | 0.000035 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaC | 4 | 187 | All | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 153 | 154 | All | 0.000029 |
ORF1ab/nsp3 | 1245 | E1245K | GaG | AaA | 1 | 154 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 115 | 115 | AY.24 | 0.049569 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 88 | 88 | All | 0.000017 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 68 | 68 | All | 0.000013 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 49 | 49 | AY.20 | 0.001904 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 42 | 42 | B.1.1.518 | 0.265823 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 29 | 29 | All | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 22 | 22 | AY.42 | 0.000885 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 17 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 6 | 6 | B.1.126 | 0.007653 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 5 | 6 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1245 | E1245K | GaG | AaA | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1245 | E1245G | gAG | gGT | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245Q | Gag | Cag | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1245 | E1245Q | Gag | Cag | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1245 | E1245del1 | gaG | ga- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245I | GAG | ATC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245Y | GaG | TaT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245L | GAg | CTg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245F | GAG | TTT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245I | GAG | ATT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245Y | GaG | TaC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245L | GAg | TTg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245F | GAG | TTC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245N | GaG | AaC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245N | GaG | AaT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1245 | E1245N | GaG | AaT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245I | GAG | ATT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245I | GAG | ATC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245N | GaG | AaC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245Y | GaG | TaC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245Y | GaG | TaT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245F | GAG | TTC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245F | GAG | TTT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245del1 | gaG | ga- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1245 | E1245M | GAg | ATg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245L | GAg | CTg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaC | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1245 | E1245L | GAg | TTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245M | GAg | ATg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1245 | E1245A | gAg | gCg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp3 | 1245 | E1245K | Gag | Aag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1245 | E1245X | Gag | Tag | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1245 | E1245V | gAg | gTg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1245 | E1245G | gAg | gGg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1245 | E1245E | gaG | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1245 | E1245del | GAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1245 | E1245D | gaG | gaT | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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