CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1244 | L1244F | L2062F | nonsyn | Ctt | Ttt | 8852 | 8852 | 1 | 6449-6451 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8852 | 8852 | All | 0.001693 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1986 | 1986 | B.1.617.2 | 0.007478 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1021 | 1021 | AY.61 | 0.106978 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 929 | 929 | B.1.1.7 | 0.000832 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 567 | 567 | B.1.1 | 0.010286 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 542 | 542 | B.1.1.298 | 0.467241 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 488 | 488 | AY.4 | 0.00076 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 210 | 210 | AY.25 | 0.001263 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 186 | 186 | AY.75.1 | 0.033538 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 181 | 181 | B.1.160 | 0.005645 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 127 | 127 | AY.103 | 0.000789 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 124 | 124 | B.1.2 | 0.001092 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 101 | 101 | AY.43 | 0.000447 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 98 | 98 | B.1.468 | 0.56 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 97 | 97 | B.1 | 0.000888 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 73 | 73 | AY.44 | 0.000444 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 73 | 73 | B.1.234 | 0.009632 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 70 | 70 | AY.118 | 0.004385 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 70 | 70 | B.1.177 | 0.000922 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 69 | 69 | B.1.126 | 0.08801 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 65 | 65 | AY.39 | 0.001606 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 58 | 58 | B.1.1.39 | 0.029562 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 55 | 55 | P.1 | 0.000866 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 54 | 54 | AY.3 | 0.000537 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 48 | 48 | AY.46.2 | 0.030496 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 44 | 44 | B.1.1.432 | 0.055696 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 43 | 43 | AY.26 | 0.001217 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 41 | 41 | AY.102 | 0.001087 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 41 | 41 | AY.47 | 0.001275 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 40 | 40 | B.1.243 | 0.002783 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 39 | 39 | AY.16.1 | 0.018327 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 38 | 38 | AY.65 | 0.020256 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 37 | 37 | AY.120 | 0.001376 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 36 | 36 | AY.66 | 0.038503 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 33 | 33 | AY.5.4 | 0.009131 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 30 | 30 | AY.119 | 0.001059 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 30 | 30 | AY.71 | 0.014252 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 29 | 29 | AY.116 | 0.008317 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 28 | 28 | B | 0.003579 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 27 | 27 | AY.20 | 0.001049 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 27 | 27 | AY.46.4 | 0.004442 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 25 | 25 | AY.9.2 | 0.000918 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 24 | 24 | AY.13 | 0.003863 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 24 | 24 | AY.48 | 0.011163 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 24 | 24 | AY.75 | 0.001345 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 24 | 24 | AY.98.1 | 0.001162 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 23 | 23 | B.1.258 | 0.001531 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 19 | 19 | AY.4.2.1 | 0.002831 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 18 | 18 | AY.10 | 0.009539 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 13 | 13 | B.1.628 | 0.004581 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 12 | 12 | B.1.36.29 | 0.006208 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | AY.19 | 0.012543 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | AY.67 | 0.005107 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | B.1.466.2 | 0.004304 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | B.1.588 | 0.010009 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 11 | 11 | B.1.93 | 0.010271 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 10 | 10 | AY.16 | 0.003797 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 10 | 10 | C.5 | 0.909091 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 9 | 9 | B.1.1.311 | 0.003223 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | AY.32 | 0.00426 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 8 | 8 | C.1.1 | 0.615385 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | A.21 | 0.019391 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | AY.55 | 0.006422 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | B.1.1.192 | 0.016166 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.108 | 0.006615 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | AY.70 | 0.001251 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.77 | 0.005637 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | B.1.227 | 0.238095 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.1.397 | 0.009009 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.177.56 | 0.00267 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.267 | 0.074074 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 4 | 4 | W.4 | 0.005405 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.360 | 0.037975 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.1.272 | 0.010417 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.438.2 | 0.038462 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.47 | 0.012987 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.250 | 0.014493 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1244 | L1244F | Ctt | Ttt | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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