CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1244

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31244L1244FL2062FnonsynCttTtt8852885216449-6451
ORF1ab/nsp31244L1244delL2062deldelCTT---57757716449-6451
ORF1ab/nsp31244L1244IL2062InonsynCttAtt24424416449-6451
ORF1ab/nsp31244L1244LL2062LsynctTctC2241710.7633936449-6451
ORF1ab/nsp31244L1244LL2062LsynctTctA224430.1919646449-6451
ORF1ab/nsp31244L1244LL2062LsynctTctG22480.03571436449-6451
ORF1ab/nsp31244L1244LL2062LsynCtTTtA22410.004464296449-6451
ORF1ab/nsp31244L1244LL2062LsynCtTTtG22410.004464296449-6451
ORF1ab/nsp31244L1244PL2062PnonsyncTtcCt12912916449-6451
ORF1ab/nsp31244L1244RL2062RnonsyncTtcGt232316449-6451
ORF1ab/nsp31244L1244VL2062VnonsynCttGtt101016449-6451
ORF1ab/nsp31244L1244del1L2062del1delCtt-tt1060.66449-6451
ORF1ab/nsp31244L1244del1L2062del1delcTtc-t1030.36449-6451
ORF1ab/nsp31244L1244del1L2062del1delCtT-tC1010.16449-6451
ORF1ab/nsp31244L1244HL2062HnonsyncTtcAt6616449-6451
ORF1ab/nsp31244L1244SL2062SnonsynCTtTCt2216449-6451
ORF1ab/nsp31244L1244QL2062QnonsyncTTcAA1116449-6451
ORF1ab/nsp31244L1244del2L2062del2delCTT--N1116449-6451
ORF1ab/nsp31244L1244ML2062MnonsynCtTAtG1116449-6451

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31244L1244FCttTtt88528852All0.001693
ORF1ab/nsp31244L1244FCttTtt19861986B.1.617.20.007478
ORF1ab/nsp31244L1244FCttTtt10211021AY.610.106978
ORF1ab/nsp31244L1244FCttTtt929929B.1.1.70.000832
ORF1ab/nsp31244L1244delCTT---577577All0.00011
ORF1ab/nsp31244L1244FCttTtt567567B.1.10.010286
ORF1ab/nsp31244L1244FCttTtt542542B.1.1.2980.467241
ORF1ab/nsp31244L1244delCTT---525525L.11
ORF1ab/nsp31244L1244FCttTtt488488AY.40.00076
ORF1ab/nsp31244L1244ICttAtt244244All0.000047
ORF1ab/nsp31244L1244LctTctC171224All0.000033
ORF1ab/nsp31244L1244LctTctA43224All0.000008
ORF1ab/nsp31244L1244LctTctG8224All0.000002
ORF1ab/nsp31244L1244LCtTTtA1224All0
ORF1ab/nsp31244L1244LCtTTtG1224All0
ORF1ab/nsp31244L1244FCttTtt210210AY.250.001263
ORF1ab/nsp31244L1244FCttTtt186186AY.75.10.033538
ORF1ab/nsp31244L1244FCttTtt181181B.1.1600.005645
ORF1ab/nsp31244L1244ICttAtt139139AY.40.000216
ORF1ab/nsp31244L1244PcTtcCt129129All0.000025
ORF1ab/nsp31244L1244FCttTtt127127AY.1030.000789
ORF1ab/nsp31244L1244FCttTtt124124B.1.20.001092
ORF1ab/nsp31244L1244FCttTtt101101AY.430.000447
ORF1ab/nsp31244L1244FCttTtt9898B.1.4680.56
ORF1ab/nsp31244L1244FCttTtt9797B.10.000888
ORF1ab/nsp31244L1244FCttTtt7373AY.440.000444
ORF1ab/nsp31244L1244FCttTtt7373B.1.2340.009632
ORF1ab/nsp31244L1244FCttTtt7070AY.1180.004385
ORF1ab/nsp31244L1244FCttTtt7070B.1.1770.000922
ORF1ab/nsp31244L1244FCttTtt6969B.1.1260.08801
ORF1ab/nsp31244L1244FCttTtt6565AY.390.001606
ORF1ab/nsp31244L1244LctTctC5965AY.40.000092
ORF1ab/nsp31244L1244LctTctA665AY.40.000009
ORF1ab/nsp31244L1244FCttTtt5858B.1.1.390.029562
ORF1ab/nsp31244L1244FCttTtt5555P.10.000866
ORF1ab/nsp31244L1244FCttTtt5454AY.30.000537
ORF1ab/nsp31244L1244PcTtcCt5151P.10.000803
ORF1ab/nsp31244L1244FCttTtt4848AY.46.20.030496
ORF1ab/nsp31244L1244FCttTtt4444B.1.1.4320.055696
ORF1ab/nsp31244L1244FCttTtt4343AY.260.001217
ORF1ab/nsp31244L1244FCttTtt4141AY.1020.001087
ORF1ab/nsp31244L1244FCttTtt4141AY.470.001275
ORF1ab/nsp31244L1244FCttTtt4040B.1.2430.002783
ORF1ab/nsp31244L1244FCttTtt3939AY.16.10.018327
ORF1ab/nsp31244L1244FCttTtt3838AY.650.020256
ORF1ab/nsp31244L1244FCttTtt3737AY.1200.001376
ORF1ab/nsp31244L1244FCttTtt3636AY.660.038503
ORF1ab/nsp31244L1244FCttTtt3333AY.5.40.009131
ORF1ab/nsp31244L1244FCttTtt3030AY.1190.001059
ORF1ab/nsp31244L1244FCttTtt3030AY.710.014252
ORF1ab/nsp31244L1244FCttTtt2929AY.1160.008317
ORF1ab/nsp31244L1244FCttTtt2828B0.003579
ORF1ab/nsp31244L1244FCttTtt2727AY.200.001049
ORF1ab/nsp31244L1244FCttTtt2727AY.46.40.004442
ORF1ab/nsp31244L1244FCttTtt2626B.1.4290.000612
ORF1ab/nsp31244L1244FCttTtt2525AY.9.20.000918
ORF1ab/nsp31244L1244FCttTtt2424AY.130.003863
ORF1ab/nsp31244L1244PcTtcCt2424AY.420.000966
ORF1ab/nsp31244L1244FCttTtt2424AY.480.011163
ORF1ab/nsp31244L1244FCttTtt2424AY.750.001345
ORF1ab/nsp31244L1244FCttTtt2424AY.98.10.001162
ORF1ab/nsp31244L1244RcTtcGt2323All0.000004
ORF1ab/nsp31244L1244ICttAtt2323AY.4.50.002472
ORF1ab/nsp31244L1244FCttTtt2323B.1.2580.001531
ORF1ab/nsp31244L1244LctTctC1220B.1.1.70.000011
ORF1ab/nsp31244L1244LctTctA520B.1.1.70.000004
ORF1ab/nsp31244L1244LctTctG220B.1.1.70.000002
ORF1ab/nsp31244L1244LCtTTtG120B.1.1.70.000001
ORF1ab/nsp31244L1244FCttTtt2020B.1.3510.000595
ORF1ab/nsp31244L1244FCttTtt1919AY.4.2.10.002831
ORF1ab/nsp31244L1244FCttTtt1818AY.100.009539
ORF1ab/nsp31244L1244FCttTtt1818AY.330.001202
ORF1ab/nsp31244L1244FCttTtt1818B.1.1.5190.000715
ORF1ab/nsp31244L1244FCttTtt1818B.1.5260.000423
ORF1ab/nsp31244L1244PcTtcCt1616B.1.1.70.000014
ORF1ab/nsp31244L1244LctTctC1515AY.90.001014
ORF1ab/nsp31244L1244FCttTtt1515C.370.001741
ORF1ab/nsp31244L1244LctTctC1313AY.420.000523
ORF1ab/nsp31244L1244delCTT---1313B.10.000119
ORF1ab/nsp31244L1244LctTctC1313B.1.4270.000656
ORF1ab/nsp31244L1244FCttTtt1313B.1.6280.004581
ORF1ab/nsp31244L1244FCttTtt1212AY.460.001249
ORF1ab/nsp31244L1244FCttTtt1212B.1.36.290.006208
ORF1ab/nsp31244L1244FCttTtt1212B.1.5950.003132
ORF1ab/nsp31244L1244FCttTtt1212B.1.617.10.001548
ORF1ab/nsp31244L1244ICttAtt1212B.1.617.20.000045
ORF1ab/nsp31244L1244FCttTtt1111AY.190.012543
ORF1ab/nsp31244L1244LctTctA1011AY.290.000158
ORF1ab/nsp31244L1244LctTctC111AY.290.000016
ORF1ab/nsp31244L1244FCttTtt1111AY.46.60.000794
ORF1ab/nsp31244L1244FCttTtt1111AY.670.005107
ORF1ab/nsp31244L1244FCttTtt1111B.1.2210.000781
ORF1ab/nsp31244L1244FCttTtt1111B.1.466.20.004304
ORF1ab/nsp31244L1244FCttTtt1111B.1.5880.010009
ORF1ab/nsp31244L1244FCttTtt1111B.1.930.010271
ORF1ab/nsp31244L1244VCttGtt1010All0.000002
ORF1ab/nsp31244L1244del1Ctt-tt610All0.000001
ORF1ab/nsp31244L1244del1cTtc-t310All0.000001
ORF1ab/nsp31244L1244del1CtT-tC110All0
ORF1ab/nsp31244L1244FCttTtt1010AY.1000.00046
ORF1ab/nsp31244L1244FCttTtt1010AY.160.003797
ORF1ab/nsp31244L1244FCttTtt1010B.1.1.630.003858
ORF1ab/nsp31244L1244FCttTtt1010B.1.177.210.000765
ORF1ab/nsp31244L1244FCttTtt1010C.50.909091
ORF1ab/nsp31244L1244FCttTtt99AY.290.000142
ORF1ab/nsp31244L1244FCttTtt99B.1.1.3110.003223
ORF1ab/nsp31244L1244LctTctC99B.1.258.220.024
ORF1ab/nsp31244L1244FCttTtt99Q.10.001137
ORF1ab/nsp31244L1244FCttTtt88AY.320.00426
ORF1ab/nsp31244L1244FCttTtt88AY.4.20.000174
ORF1ab/nsp31244L1244FCttTtt88AY.980.000632
ORF1ab/nsp31244L1244delCTT---88B.1.1.70.000007
ORF1ab/nsp31244L1244LctTctA58B.1.20.000044
ORF1ab/nsp31244L1244LctTctC38B.1.20.000026
ORF1ab/nsp31244L1244FCttTtt88B.1.258.170.000832
ORF1ab/nsp31244L1244FCttTtt88B.1.5960.000697
ORF1ab/nsp31244L1244FCttTtt88C.1.10.615385
ORF1ab/nsp31244L1244FCttTtt77A.210.019391
ORF1ab/nsp31244L1244FCttTtt77AY.1100.000789
ORF1ab/nsp31244L1244FCttTtt77AY.340.000679
ORF1ab/nsp31244L1244FCttTtt77AY.550.006422
ORF1ab/nsp31244L1244FCttTtt77B.1.1.1920.016166
ORF1ab/nsp31244L1244FCttTtt77B.1.1.2220.001428
ORF1ab/nsp31244L1244FCttTtt77B.1.1.4340.00244
ORF1ab/nsp31244L1244ICttAtt77B.1.1.70.000006
ORF1ab/nsp31244L1244PcTtcCt77B.1.617.20.000026
ORF1ab/nsp31244L1244HcTtcAt66All0.000001
ORF1ab/nsp31244L1244FCttTtt66AY.1080.006615
ORF1ab/nsp31244L1244FCttTtt66AY.1170.000507
ORF1ab/nsp31244L1244FCttTtt66AY.450.00073
ORF1ab/nsp31244L1244ICttAtt66AY.470.000187
ORF1ab/nsp31244L1244FCttTtt66AY.5.30.002024
ORF1ab/nsp31244L1244FCttTtt66AY.520.004886
ORF1ab/nsp31244L1244FCttTtt66AY.680.001642
ORF1ab/nsp31244L1244FCttTtt66AY.7.10.000676
ORF1ab/nsp31244L1244FCttTtt66AY.700.001251
ORF1ab/nsp31244L1244FCttTtt66B.1.1.10.00196
ORF1ab/nsp31244L1244delCTT---66B.1.1.100.006689
ORF1ab/nsp31244L1244FCttTtt66B.1.1.2160.005343
ORF1ab/nsp31244L1244FCttTtt66B.1.1.700.002046
ORF1ab/nsp31244L1244ICttAtt66B.1.20.000053
ORF1ab/nsp31244L1244FCttTtt66B.1.5250.000679
ORF1ab/nsp31244L1244FCttTtt66B.1.6210.000531
ORF1ab/nsp31244L1244FCttTtt55AY.1060.001674
ORF1ab/nsp31244L1244FCttTtt55AY.230.000349
ORF1ab/nsp31244L1244PcTtcCt55AY.250.00003
ORF1ab/nsp31244L1244FCttTtt55AY.50.000103
ORF1ab/nsp31244L1244FCttTtt55AY.590.002648
ORF1ab/nsp31244L1244FCttTtt55AY.730.003327
ORF1ab/nsp31244L1244FCttTtt55AY.740.000578
ORF1ab/nsp31244L1244FCttTtt55AY.770.005637
ORF1ab/nsp31244L1244ICttAtt55AY.90.000338
ORF1ab/nsp31244L1244FCttTtt55AY.90.000338
ORF1ab/nsp31244L1244FCttTtt55AY.9.10.000419
ORF1ab/nsp31244L1244FCttTtt55B.1.2270.238095
ORF1ab/nsp31244L1244LctTctC55B.1.6200.00473
ORF1ab/nsp31244L1244FCttTtt55D.20.000375
ORF1ab/nsp31244L1244LctTctA24AY.1030.000012
ORF1ab/nsp31244L1244LctTctC24AY.1030.000012
ORF1ab/nsp31244L1244FCttTtt44AY.1210.000541
ORF1ab/nsp31244L1244FCttTtt44AY.39.10.000158
ORF1ab/nsp31244L1244LctTctA34AY.440.000018
ORF1ab/nsp31244L1244LctTctC14AY.440.000006
ORF1ab/nsp31244L1244FCttTtt44AY.570.002625
ORF1ab/nsp31244L1244FCttTtt44AY.690.000747
ORF1ab/nsp31244L1244ICttAtt44AY.80.002424
ORF1ab/nsp31244L1244FCttTtt44AY.840.00175
ORF1ab/nsp31244L1244ICttAtt44B.10.000037
ORF1ab/nsp31244L1244FCttTtt44B.1.1.280.001245
ORF1ab/nsp31244L1244ICttAtt44B.1.1.3060.001754
ORF1ab/nsp31244L1244FCttTtt44B.1.1.3970.009009
ORF1ab/nsp31244L1244delCTT---44B.1.1.5190.000159
ORF1ab/nsp31244L1244FCttTtt44B.1.177.560.00267
ORF1ab/nsp31244L1244FCttTtt44B.1.177.600.000874
ORF1ab/nsp31244L1244FCttTtt44B.1.2670.074074
ORF1ab/nsp31244L1244FCttTtt44B.1.5820.001963
ORF1ab/nsp31244L1244LctTctC44B.1.617.20.000015
ORF1ab/nsp31244L1244FCttTtt44B.1.6370.000292
ORF1ab/nsp31244L1244FCttTtt44W.40.005405
ORF1ab/nsp31244L1244FCttTtt33AY.10.001187
ORF1ab/nsp31244L1244FCttTtt33AY.1110.000549
ORF1ab/nsp31244L1244LctTctC33AY.1200.000112
ORF1ab/nsp31244L1244FCttTtt33AY.360.000445
ORF1ab/nsp31244L1244LctTctC23AY.390.000049
ORF1ab/nsp31244L1244LctTctA13AY.390.000025
ORF1ab/nsp31244L1244VCttGtt33AY.40.000005
ORF1ab/nsp31244L1244FCttTtt33AY.4.50.000322
ORF1ab/nsp31244L1244FCttTtt33AY.410.000882
ORF1ab/nsp31244L1244FCttTtt33AY.420.000121
ORF1ab/nsp31244L1244ICttAtt33AY.430.000013
ORF1ab/nsp31244L1244LctTctC33AY.430.000013
ORF1ab/nsp31244L1244FCttTtt33AY.540.000286
ORF1ab/nsp31244L1244FCttTtt33AY.620.001307
ORF1ab/nsp31244L1244RcTtcGt33AY.750.000168
ORF1ab/nsp31244L1244ICttAtt33B.1.1.2540.033708
ORF1ab/nsp31244L1244PcTtcCt33B.1.1.330.001263
ORF1ab/nsp31244L1244FCttTtt33B.1.1.330.001263
ORF1ab/nsp31244L1244FCttTtt33B.1.1.4480.006098
ORF1ab/nsp31244L1244VCttGtt33B.1.1.70.000003
ORF1ab/nsp31244L1244RcTtcGt33B.1.1.70.000003
ORF1ab/nsp31244L1244FCttTtt33B.1.177.520.005272
ORF1ab/nsp31244L1244del1cTtc-t13B.1.20.000009
ORF1ab/nsp31244L1244del1CtT-tC13B.1.20.000009
ORF1ab/nsp31244L1244del1Ctt-tt13B.1.20.000009
ORF1ab/nsp31244L1244RcTtcGt33B.1.351.30.002629
ORF1ab/nsp31244L1244FCttTtt33B.1.3600.037975
ORF1ab/nsp31244L1244FCttTtt33B.1.4700.004213
ORF1ab/nsp31244L1244FCttTtt33B.1.6090.001438
ORF1ab/nsp31244L1244FCttTtt33B.1.6250.007059
ORF1ab/nsp31244L1244FCttTtt33C.37.10.007853
ORF1ab/nsp31244L1244LctTctA33P.1.140.000143
ORF1ab/nsp31244L1244FCttTtt33P.1.140.000143
ORF1ab/nsp31244L1244FCttTtt33P.20.00056
ORF1ab/nsp31244L1244FCttTtt33Q.80.000495
ORF1ab/nsp31244L1244FCttTtt22A0.000774
ORF1ab/nsp31244L1244FCttTtt22A.30.004193
ORF1ab/nsp31244L1244FCttTtt22AE.80.000978
ORF1ab/nsp31244L1244SCTtTCt22All0
ORF1ab/nsp31244L1244LctTctC22AY.1010.000981
ORF1ab/nsp31244L1244RcTtcGt22AY.1020.000053
ORF1ab/nsp31244L1244ICttAtt22AY.1030.000012
ORF1ab/nsp31244L1244RcTtcGt22AY.1060.00067
ORF1ab/nsp31244L1244FCttTtt22AY.1130.000285
ORF1ab/nsp31244L1244ICttAtt22AY.1200.000074
ORF1ab/nsp31244L1244FCttTtt22AY.140.000176
ORF1ab/nsp31244L1244LctTctC22AY.250.000012
ORF1ab/nsp31244L1244ICttAtt22AY.250.000012
ORF1ab/nsp31244L1244FCttTtt22AY.270.000129
ORF1ab/nsp31244L1244PcTtcCt22AY.390.000049
ORF1ab/nsp31244L1244RcTtcGt22AY.40.000003
ORF1ab/nsp31244L1244delCTT---22AY.40.000003
ORF1ab/nsp31244L1244LctTctC12AY.4.20.000022
ORF1ab/nsp31244L1244LctTctA12AY.4.20.000022
ORF1ab/nsp31244L1244PcTtcCt22AY.440.000012
ORF1ab/nsp31244L1244delCTT---22AY.470.000062
ORF1ab/nsp31244L1244FCttTtt22AY.500.001599
ORF1ab/nsp31244L1244PcTtcCt22AY.540.000191
ORF1ab/nsp31244L1244ICttAtt22AY.580.001815
ORF1ab/nsp31244L1244FCttTtt22AY.70.000392
ORF1ab/nsp31244L1244LctTctC22AY.750.000112
ORF1ab/nsp31244L1244LctTctC22AY.9.10.000167
ORF1ab/nsp31244L1244FCttTtt22AY.920.000575
ORF1ab/nsp31244L1244LctTctC12B0.000128
ORF1ab/nsp31244L1244LctTctG12B0.000128
ORF1ab/nsp31244L1244delCTT---22B.1.10.000036
ORF1ab/nsp31244L1244FCttTtt22B.1.1.2690.002706
ORF1ab/nsp31244L1244FCttTtt22B.1.1.2720.010417
ORF1ab/nsp31244L1244FCttTtt22B.1.1.4160.00181
ORF1ab/nsp31244L1244FCttTtt22B.1.1.4200.002012
ORF1ab/nsp31244L1244FCttTtt22B.1.1690.029851
ORF1ab/nsp31244L1244LctTctC12B.1.1770.000013
ORF1ab/nsp31244L1244LctTctG12B.1.1770.000013
ORF1ab/nsp31244L1244FCttTtt22B.1.177.580.002663
ORF1ab/nsp31244L1244ICttAtt22B.1.177.600.000437
ORF1ab/nsp31244L1244FCttTtt22B.1.177.810.000379
ORF1ab/nsp31244L1244PcTtcCt22B.1.20.000018
ORF1ab/nsp31244L1244FCttTtt22B.1.214.20.001199
ORF1ab/nsp31244L1244FCttTtt22B.1.2370.00995
ORF1ab/nsp31244L1244FCttTtt22B.1.30.005236
ORF1ab/nsp31244L1244FCttTtt22B.1.360.000292
ORF1ab/nsp31244L1244FCttTtt22B.1.36.180.00084
ORF1ab/nsp31244L1244LctTctA22B.1.36.90.006431
ORF1ab/nsp31244L1244FCttTtt22B.1.4090.001563
ORF1ab/nsp31244L1244FCttTtt22B.1.438.10.000215
ORF1ab/nsp31244L1244LctTctG12B.1.438.10.000107
ORF1ab/nsp31244L1244LctTctC12B.1.438.10.000107
ORF1ab/nsp31244L1244FCttTtt22B.1.438.20.038462
ORF1ab/nsp31244L1244LctTctC22B.1.5250.000226
ORF1ab/nsp31244L1244FCttTtt22B.1.5650.001621
ORF1ab/nsp31244L1244del1Ctt-tt22B.1.6270.00404
ORF1ab/nsp31244L1244HcTtcAt22B.1.6370.000146
ORF1ab/nsp31244L1244VCttGtt22D.20.00015
ORF1ab/nsp31244L1244FCttTtt22P.1.170.000324
ORF1ab/nsp31244L1244FCttTtt22Q.30.00029
ORF1ab/nsp31244L1244FCttTtt22R.10.00018
ORF1ab/nsp31244L1244PcTtcCt110.055556
ORF1ab/nsp31244L1244LctTctA110.055556
ORF1ab/nsp31244L1244HcTtcAt110.055556
ORF1ab/nsp31244L1244QcTTcAA110.055556
ORF1ab/nsp31244L1244ICttAtt11A0.000387
ORF1ab/nsp31244L1244FCttTtt11A.2.20.001689
ORF1ab/nsp31244L1244PcTtcCt11A.270.001656
ORF1ab/nsp31244L1244FCttTtt11A.50.001923
ORF1ab/nsp31244L1244del2CTT--N11All0
ORF1ab/nsp31244L1244MCtTAtG11All0
ORF1ab/nsp31244L1244QcTTcAA11All0
ORF1ab/nsp31244L1244FCttTtt11AY.1010.00049
ORF1ab/nsp31244L1244LctTctC11AY.1020.000027
ORF1ab/nsp31244L1244RcTtcGt11AY.1030.000006
ORF1ab/nsp31244L1244HcTtcAt11AY.1030.000006
ORF1ab/nsp31244L1244FCttTtt11AY.1040.001984
ORF1ab/nsp31244L1244FCttTtt11AY.1050.000643
ORF1ab/nsp31244L1244PcTtcCt11AY.1070.000466
ORF1ab/nsp31244L1244FCttTtt11AY.1150.005208
ORF1ab/nsp31244L1244FCttTtt11AY.116.10.000311
ORF1ab/nsp31244L1244LctTctC11AY.1180.000063
ORF1ab/nsp31244L1244LctTctC11AY.1190.000035
ORF1ab/nsp31244L1244FCttTtt11AY.120.000316
ORF1ab/nsp31244L1244FCttTtt11AY.120.10.000321
ORF1ab/nsp31244L1244FCttTtt11AY.120.20.001285
ORF1ab/nsp31244L1244ICttAtt11AY.1210.000135
ORF1ab/nsp31244L1244delCTT---11AY.140.000088
ORF1ab/nsp31244L1244LctTctC11AY.140.000088
ORF1ab/nsp31244L1244ICttAtt11AY.170.008197
ORF1ab/nsp31244L1244FCttTtt11AY.210.001898
ORF1ab/nsp31244L1244FCttTtt11AY.220.002092
ORF1ab/nsp31244L1244LctTctC11AY.230.00007
ORF1ab/nsp31244L1244ICttAtt11AY.240.000431
ORF1ab/nsp31244L1244delCTT---11AY.250.000006
ORF1ab/nsp31244L1244ICttAtt11AY.260.000028
ORF1ab/nsp31244L1244PcTtcCt11AY.280.00189
ORF1ab/nsp31244L1244PcTtcCt11AY.290.000016
ORF1ab/nsp31244L1244RcTtcGt11AY.30.00001
ORF1ab/nsp31244L1244ICttAtt11AY.30.00001
ORF1ab/nsp31244L1244FCttTtt11AY.3.10.000085
ORF1ab/nsp31244L1244ICttAtt11AY.330.000067
ORF1ab/nsp31244L1244del1Ctt-tt11AY.350.000233
ORF1ab/nsp31244L1244PcTtcCt11AY.360.000148
ORF1ab/nsp31244L1244FCttTtt11AY.370.000316
ORF1ab/nsp31244L1244FCttTtt11AY.380.000499
ORF1ab/nsp31244L1244SCTtTCt11AY.390.000025
ORF1ab/nsp31244L1244LctTctC11AY.39.10.00004
ORF1ab/nsp31244L1244PcTtcCt11AY.40.000002
ORF1ab/nsp31244L1244delCTT---11AY.4.50.000107
ORF1ab/nsp31244L1244LctTctA11AY.4.50.000107
ORF1ab/nsp31244L1244ICttAtt11AY.420.00004
ORF1ab/nsp31244L1244VCttGtt11AY.420.00004
ORF1ab/nsp31244L1244SCTtTCt11AY.440.000006
ORF1ab/nsp31244L1244VCttGtt11AY.440.000006
ORF1ab/nsp31244L1244FCttTtt11AY.46.10.001027
ORF1ab/nsp31244L1244FCttTtt11AY.490.003195
ORF1ab/nsp31244L1244RcTtcGt11AY.50.000021
ORF1ab/nsp31244L1244FCttTtt11AY.510.000909
ORF1ab/nsp31244L1244ICttAtt11AY.520.000814
ORF1ab/nsp31244L1244LctTctC11AY.550.000917
ORF1ab/nsp31244L1244FCttTtt11AY.560.001605
ORF1ab/nsp31244L1244FCttTtt11AY.60.000041
ORF1ab/nsp31244L1244del1Ctt-tt11AY.610.000105
ORF1ab/nsp31244L1244delCTT---11AY.660.00107
ORF1ab/nsp31244L1244FCttTtt11AY.7.20.000559
ORF1ab/nsp31244L1244PcTtcCt11AY.710.000475
ORF1ab/nsp31244L1244FCttTtt11AY.720.001361
ORF1ab/nsp31244L1244del1Ctt-tt11AY.75.10.00018
ORF1ab/nsp31244L1244FCttTtt11AY.830.001724
ORF1ab/nsp31244L1244FCttTtt11AY.850.000427
ORF1ab/nsp31244L1244LctTctC11AY.870.000833
ORF1ab/nsp31244L1244ICttAtt11AY.870.000833
ORF1ab/nsp31244L1244FCttTtt11AY.880.000884
ORF1ab/nsp31244L1244PcTtcCt11AY.9.20.000037
ORF1ab/nsp31244L1244LctTctG11AY.98.10.000048
ORF1ab/nsp31244L1244delCTT---11AY.990.001049
ORF1ab/nsp31244L1244FCttTtt11AY.99.20.000092
ORF1ab/nsp31244L1244ICttAtt11B0.000128
ORF1ab/nsp31244L1244LctTctC11B.1.10.000018
ORF1ab/nsp31244L1244FCttTtt11B.1.1.130.035714
ORF1ab/nsp31244L1244delCTT---11B.1.1.1330.008475
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1570.000913
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1640.005155
ORF1ab/nsp31244L1244LctTctC11B.1.1.1690.018182
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1700.001247
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1720.018182
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1740.003378
ORF1ab/nsp31244L1244FCttTtt11B.1.1.1860.003436
ORF1ab/nsp31244L1244FCttTtt11B.1.1.2140.000055
ORF1ab/nsp31244L1244FCttTtt11B.1.1.250.000569
ORF1ab/nsp31244L1244FCttTtt11B.1.1.2840.000107
ORF1ab/nsp31244L1244LctTctC11B.1.1.3260.001761
ORF1ab/nsp31244L1244delCTT---11B.1.1.3480.000796
ORF1ab/nsp31244L1244FCttTtt11B.1.1.3510.002793
ORF1ab/nsp31244L1244FCttTtt11B.1.1.3540.004386
ORF1ab/nsp31244L1244FCttTtt11B.1.1.3690.000446
ORF1ab/nsp31244L1244FCttTtt11B.1.1.3720.000689
ORF1ab/nsp31244L1244FCttTtt11B.1.1.4090.002833
ORF1ab/nsp31244L1244LCtTTtA11B.1.1.460.004367
ORF1ab/nsp31244L1244FCttTtt11B.1.1.5170.006803
ORF1ab/nsp31244L1244ICttAtt11B.1.1.5190.00004
ORF1ab/nsp31244L1244FCttTtt11B.1.1.540.003021
ORF1ab/nsp31244L1244RcTtcGt11B.1.1.630.000386
ORF1ab/nsp31244L1244del2CTT--N11B.1.1.70.000001
ORF1ab/nsp31244L1244MCtTAtG11B.1.1.70.000001
ORF1ab/nsp31244L1244HcTtcAt11B.1.1.70.000001
ORF1ab/nsp31244L1244FCttTtt11B.1.160.160.000929
ORF1ab/nsp31244L1244delCTT---11B.1.1770.000013
ORF1ab/nsp31244L1244FCttTtt11B.1.177.150.000631
ORF1ab/nsp31244L1244PcTtcCt11B.1.177.160.000664
ORF1ab/nsp31244L1244RcTtcGt11B.1.177.160.000664
ORF1ab/nsp31244L1244FCttTtt11B.1.177.200.001517
ORF1ab/nsp31244L1244FCttTtt11B.1.177.230.003236
ORF1ab/nsp31244L1244FCttTtt11B.1.177.460.000918
ORF1ab/nsp31244L1244FCttTtt11B.1.177.470.012987
ORF1ab/nsp31244L1244delCTT---11B.1.177.510.004566
ORF1ab/nsp31244L1244delCTT---11B.1.177.620.001192
ORF1ab/nsp31244L1244FCttTtt11B.1.177.630.002703
ORF1ab/nsp31244L1244FCttTtt11B.1.177.70.000165
ORF1ab/nsp31244L1244delCTT---11B.1.177.70.000165
ORF1ab/nsp31244L1244FCttTtt11B.1.177.80.000752
ORF1ab/nsp31244L1244delCTT---11B.1.177.830.001481
ORF1ab/nsp31244L1244LctTctG11B.1.177.860.000183
ORF1ab/nsp31244L1244RcTtcGt11B.1.20.000009
ORF1ab/nsp31244L1244delCTT---11B.1.20.000009
ORF1ab/nsp31244L1244FCttTtt11B.1.2060.000816
ORF1ab/nsp31244L1244FCttTtt11B.1.221.30.000833
ORF1ab/nsp31244L1244del1cTtc-t11B.1.2340.000132
ORF1ab/nsp31244L1244FCttTtt11B.1.2400.000216
ORF1ab/nsp31244L1244FCttTtt11B.1.2500.014493
ORF1ab/nsp31244L1244LctTctA11B.1.2580.000067
ORF1ab/nsp31244L1244FCttTtt11B.1.258.70.001912
ORF1ab/nsp31244L1244ICttAtt11B.1.3010.005917
ORF1ab/nsp31244L1244PcTtcCt11B.1.3340.018182
ORF1ab/nsp31244L1244PcTtcCt11B.1.3500.002933
ORF1ab/nsp31244L1244ICttAtt11B.1.3510.00003
ORF1ab/nsp31244L1244RcTtcGt11B.1.3510.00003
ORF1ab/nsp31244L1244FCttTtt11B.1.351.20.000303
ORF1ab/nsp31244L1244RcTtcGt11B.1.351.20.000303
ORF1ab/nsp31244L1244FCttTtt11B.1.36.10.00114
ORF1ab/nsp31244L1244FCttTtt11B.1.36.160.001425
ORF1ab/nsp31244L1244FCttTtt11B.1.36.170.000494
ORF1ab/nsp31244L1244FCttTtt11B.1.36.220.001208
ORF1ab/nsp31244L1244LctTctA11B.1.36.340.021277
ORF1ab/nsp31244L1244FCttTtt11B.1.3670.000792
ORF1ab/nsp31244L1244FCttTtt11B.1.3690.000285
ORF1ab/nsp31244L1244FCttTtt11B.1.3780.006849
ORF1ab/nsp31244L1244FCttTtt11B.1.4000.000429
ORF1ab/nsp31244L1244FCttTtt11B.1.4160.001269
ORF1ab/nsp31244L1244PcTtcCt11B.1.4270.00005
ORF1ab/nsp31244L1244FCttTtt11B.1.4280.00102
ORF1ab/nsp31244L1244PcTtcCt11B.1.4290.000024
ORF1ab/nsp31244L1244FCttTtt11B.1.4330.003195
ORF1ab/nsp31244L1244FCttTtt11B.1.4620.007246
ORF1ab/nsp31244L1244FCttTtt11B.1.4800.002488
ORF1ab/nsp31244L1244FCttTtt11B.1.4970.000315
ORF1ab/nsp31244L1244FCttTtt11B.1.5090.000866
ORF1ab/nsp31244L1244FCttTtt11B.1.5170.000427
ORF1ab/nsp31244L1244FCttTtt11B.1.5230.002451
ORF1ab/nsp31244L1244FCttTtt11B.1.5440.006024
ORF1ab/nsp31244L1244FCttTtt11B.1.5510.00129
ORF1ab/nsp31244L1244FCttTtt11B.1.5600.00463
ORF1ab/nsp31244L1244FCttTtt11B.1.5680.001111
ORF1ab/nsp31244L1244FCttTtt11B.1.5890.007576
ORF1ab/nsp31244L1244ICttAtt11B.1.5960.000087
ORF1ab/nsp31244L1244ICttAtt11B.1.5990.00365
ORF1ab/nsp31244L1244FCttTtt11B.1.6010.030303
ORF1ab/nsp31244L1244FCttTtt11B.1.6030.010638
ORF1ab/nsp31244L1244PcTtcCt11B.1.6090.000479
ORF1ab/nsp31244L1244delCTT---11B.1.617.20.000004
ORF1ab/nsp31244L1244del1cTtc-t11B.1.617.20.000004
ORF1ab/nsp31244L1244LctTctG11B.1.6210.000089
ORF1ab/nsp31244L1244ICttAtt11B.1.6230.000536
ORF1ab/nsp31244L1244FCttTtt11B.1.90.006173
ORF1ab/nsp31244L1244FCttTtt11B.350.007812
ORF1ab/nsp31244L1244HcTtcAt11C.350.000774
ORF1ab/nsp31244L1244FCttTtt11C.350.000774
ORF1ab/nsp31244L1244FCttTtt11C.360.000911
ORF1ab/nsp31244L1244LctTctA11C.370.000116
ORF1ab/nsp31244L1244FCttTtt11N.30.005814
ORF1ab/nsp31244L1244FCttTtt11N.40.004255
ORF1ab/nsp31244L1244delCTT---11P.10.000016
ORF1ab/nsp31244L1244ICttAtt11P.1.140.000048
ORF1ab/nsp31244L1244FCttTtt11P.1.150.000232
ORF1ab/nsp31244L1244FCttTtt11P.1.70.000319
ORF1ab/nsp31244L1244LctTctC11P.20.000187
ORF1ab/nsp31244L1244FCttTtt11Q.20.000613