CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1243 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31243V1243FV2061FnonsynGttTtt3665366516446-6448

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31243V1243FGttTtt36653665All0.000701
ORF1ab/nsp31243V1243FGttTtt675675B.1.1.70.000604
ORF1ab/nsp31243V1243FGttTtt310310AY.40.000482
ORF1ab/nsp31243V1243FGttTtt283283B.1.10.005134
ORF1ab/nsp31243V1243FGttTtt239239AY.390.005906
ORF1ab/nsp31243V1243FGttTtt160160B.10.001466
ORF1ab/nsp31243V1243FGttTtt160160B.1.1770.002107
ORF1ab/nsp31243V1243FGttTtt131131B.1.20.001154
ORF1ab/nsp31243V1243FGttTtt114114AY.250.000686
ORF1ab/nsp31243V1243FGttTtt103103AY.1030.00064
ORF1ab/nsp31243V1243FGttTtt9999B.1.617.20.000373
ORF1ab/nsp31243V1243FGttTtt9898B.1.1.2140.005435
ORF1ab/nsp31243V1243FGttTtt7070B.1.1600.002183
ORF1ab/nsp31243V1243FGttTtt6666AY.430.000292
ORF1ab/nsp31243V1243FGttTtt6363D.20.004728
ORF1ab/nsp31243V1243FGttTtt5656AY.440.000341
ORF1ab/nsp31243V1243FGttTtt5353AY.270.00343
ORF1ab/nsp31243V1243FGttTtt5252B.1.360.007587
ORF1ab/nsp31243V1243FGttTtt4949P.10.000772
ORF1ab/nsp31243V1243FGttTtt4646B.1.1.740.198276
ORF1ab/nsp31243V1243FGttTtt3434B.1.177.70.005605
ORF1ab/nsp31243V1243FGttTtt3232B.1.1.390.01631
ORF1ab/nsp31243V1243FGttTtt2727B.1.4000.011583
ORF1ab/nsp31243V1243FGttTtt2525AY.30.000249
ORF1ab/nsp31243V1243FGttTtt2323B.1.4290.000541
ORF1ab/nsp31243V1243FGttTtt2323B.1.5260.000541
ORF1ab/nsp31243V1243FGttTtt2121AY.98.10.001017
ORF1ab/nsp31243V1243FGttTtt2121B.1.4430.098131
ORF1ab/nsp31243V1243FGttTtt1919AY.610.001991
ORF1ab/nsp31243V1243FGttTtt1919B.1.1.2220.003876
ORF1ab/nsp31243V1243FGttTtt1818B.1.177.810.003408
ORF1ab/nsp31243V1243FGttTtt1717AY.1020.000451
ORF1ab/nsp31243V1243FGttTtt1515AY.9.20.000551
ORF1ab/nsp31243V1243FGttTtt1414AY.4.20.000304
ORF1ab/nsp31243V1243FGttTtt1414B.1.4270.000707
ORF1ab/nsp31243V1243FGttTtt1313AY.50.000268
ORF1ab/nsp31243V1243FGttTtt1212AY.260.00034
ORF1ab/nsp31243V1243FGttTtt1111AY.4.40.004501
ORF1ab/nsp31243V1243FGttTtt1111B.1.1.1120.647059
ORF1ab/nsp31243V1243FGttTtt1111C.370.001277
ORF1ab/nsp31243V1243FGttTtt1111P.1.70.003512
ORF1ab/nsp31243V1243FGttTtt1010AY.290.000158
ORF1ab/nsp31243V1243FGttTtt1010AY.330.000668
ORF1ab/nsp31243V1243FGttTtt1010AY.850.004272
ORF1ab/nsp31243V1243FGttTtt1010B.1.2060.008157
ORF1ab/nsp31243V1243FGttTtt1010B.1.2340.001319
ORF1ab/nsp31243V1243FGttTtt99AY.1190.000318
ORF1ab/nsp31243V1243FGttTtt99AY.420.000362
ORF1ab/nsp31243V1243FGttTtt99AY.470.00028
ORF1ab/nsp31243V1243FGttTtt99AY.510.008182
ORF1ab/nsp31243V1243FGttTtt99B.1.1.4190.066667
ORF1ab/nsp31243V1243FGttTtt88AY.360.001186
ORF1ab/nsp31243V1243FGttTtt88AY.90.000541
ORF1ab/nsp31243V1243FGttTtt88B.1.4970.002518
ORF1ab/nsp31243V1243FGttTtt77B.1.1.5190.000278
ORF1ab/nsp31243V1243FGttTtt77P.1.40.006836
ORF1ab/nsp31243V1243FGttTtt77Q.80.001154
ORF1ab/nsp31243V1243FGttTtt66AY.1000.000276
ORF1ab/nsp31243V1243FGttTtt66AY.200.000233
ORF1ab/nsp31243V1243FGttTtt66B.1.4410.057692
ORF1ab/nsp31243V1243FGttTtt55AY.100.00265
ORF1ab/nsp31243V1243FGttTtt55AY.1170.000423
ORF1ab/nsp31243V1243FGttTtt55AY.1200.000186
ORF1ab/nsp31243V1243FGttTtt55AY.230.000349
ORF1ab/nsp31243V1243FGttTtt55AY.450.000608
ORF1ab/nsp31243V1243FGttTtt55AY.75.10.000902
ORF1ab/nsp31243V1243FGttTtt55B.1.3510.000149
ORF1ab/nsp31243V1243FGttTtt55B.1.36.360.00301
ORF1ab/nsp31243V1243FGttTtt44AY.210.00759
ORF1ab/nsp31243V1243FGttTtt44AY.46.40.000658
ORF1ab/nsp31243V1243FGttTtt44AY.7.20.002237
ORF1ab/nsp31243V1243FGttTtt44AY.920.001149
ORF1ab/nsp31243V1243FGttTtt44B.1.1.10.001307
ORF1ab/nsp31243V1243FGttTtt44B.1.1.280.001245
ORF1ab/nsp31243V1243FGttTtt44B.1.177.570.001124
ORF1ab/nsp31243V1243FGttTtt44B.1.4320.044944
ORF1ab/nsp31243V1243FGttTtt44B.1.6210.000354
ORF1ab/nsp31243V1243FGttTtt33A.2.50.001497
ORF1ab/nsp31243V1243FGttTtt33AY.1160.00086
ORF1ab/nsp31243V1243FGttTtt33AY.3.10.000256
ORF1ab/nsp31243V1243FGttTtt33AY.39.10.000119
ORF1ab/nsp31243V1243FGttTtt33AY.4.50.000322
ORF1ab/nsp31243V1243FGttTtt33AY.530.000863
ORF1ab/nsp31243V1243FGttTtt33AY.560.004815
ORF1ab/nsp31243V1243FGttTtt33AY.600.002814
ORF1ab/nsp31243V1243FGttTtt33B.1.1.2160.002671
ORF1ab/nsp31243V1243FGttTtt33B.1.1.3180.000905
ORF1ab/nsp31243V1243FGttTtt33B.1.2430.000209
ORF1ab/nsp31243V1243FGttTtt33B.1.5170.001281
ORF1ab/nsp31243V1243FGttTtt33B.1.5230.007353
ORF1ab/nsp31243V1243FGttTtt33B.1.5640.001278
ORF1ab/nsp31243V1243FGttTtt33B.1.5960.000261
ORF1ab/nsp31243V1243FGttTtt33B.1.6370.000219
ORF1ab/nsp31243V1243FGttTtt33B.330.06383
ORF1ab/nsp31243V1243FGttTtt33C.360.002732
ORF1ab/nsp31243V1243FGttTtt33P.1.140.000143
ORF1ab/nsp31243V1243FGttTtt22A.210.00554
ORF1ab/nsp31243V1243FGttTtt22AY.10.000791
ORF1ab/nsp31243V1243FGttTtt22AY.1100.000225
ORF1ab/nsp31243V1243FGttTtt22AY.1110.000366
ORF1ab/nsp31243V1243FGttTtt22AY.1210.000271
ORF1ab/nsp31243V1243FGttTtt22AY.16.10.00094
ORF1ab/nsp31243V1243FGttTtt22AY.300.000791
ORF1ab/nsp31243V1243FGttTtt22AY.340.000194
ORF1ab/nsp31243V1243FGttTtt22AY.550.001835
ORF1ab/nsp31243V1243FGttTtt22AY.670.000929
ORF1ab/nsp31243V1243FGttTtt22AY.750.000112
ORF1ab/nsp31243V1243FGttTtt22AY.99.20.000184
ORF1ab/nsp31243V1243FGttTtt22B0.000256
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3170.000823
ORF1ab/nsp31243V1243FGttTtt22B.1.1.330.000842
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3540.008772
ORF1ab/nsp31243V1243FGttTtt22B.1.1.4340.000697
ORF1ab/nsp31243V1243FGttTtt22B.1.1.5260.007092
ORF1ab/nsp31243V1243FGttTtt22B.1.3240.00321
ORF1ab/nsp31243V1243FGttTtt22B.1.351.20.000605
ORF1ab/nsp31243V1243FGttTtt22B.1.3560.003454
ORF1ab/nsp31243V1243FGttTtt22B.1.36.20.021505
ORF1ab/nsp31243V1243FGttTtt22B.1.36.240.012346
ORF1ab/nsp31243V1243FGttTtt22B.1.36.290.001035
ORF1ab/nsp31243V1243FGttTtt22B.1.3670.001585
ORF1ab/nsp31243V1243FGttTtt22B.1.4560.006536
ORF1ab/nsp31243V1243FGttTtt22B.1.5400.019417
ORF1ab/nsp31243V1243FGttTtt22B.1.5460.007407
ORF1ab/nsp31243V1243FGttTtt22B.1.5770.001375
ORF1ab/nsp31243V1243FGttTtt22B.1.596.10.018692
ORF1ab/nsp31243V1243FGttTtt22B.1.6230.001073
ORF1ab/nsp31243V1243FGttTtt22P.20.000373
ORF1ab/nsp31243V1243FGttTtt11A.120.166667
ORF1ab/nsp31243V1243FGttTtt11A.270.001656
ORF1ab/nsp31243V1243FGttTtt11A.290.005319
ORF1ab/nsp31243V1243FGttTtt11AY.1040.001984
ORF1ab/nsp31243V1243FGttTtt11AY.1070.000466
ORF1ab/nsp31243V1243FGttTtt11AY.116.10.000311
ORF1ab/nsp31243V1243FGttTtt11AY.1180.000063
ORF1ab/nsp31243V1243FGttTtt11AY.120.10.000321
ORF1ab/nsp31243V1243FGttTtt11AY.130.000161
ORF1ab/nsp31243V1243FGttTtt11AY.29.10.000221
ORF1ab/nsp31243V1243FGttTtt11AY.380.000499
ORF1ab/nsp31243V1243FGttTtt11AY.4.30.000842
ORF1ab/nsp31243V1243FGttTtt11AY.410.000294
ORF1ab/nsp31243V1243FGttTtt11AY.460.000104
ORF1ab/nsp31243V1243FGttTtt11AY.46.50.000198
ORF1ab/nsp31243V1243FGttTtt11AY.5.30.000337
ORF1ab/nsp31243V1243FGttTtt11AY.5.40.000277
ORF1ab/nsp31243V1243FGttTtt11AY.60.000041
ORF1ab/nsp31243V1243FGttTtt11AY.630.000387
ORF1ab/nsp31243V1243FGttTtt11AY.650.000533
ORF1ab/nsp31243V1243FGttTtt11AY.680.000274
ORF1ab/nsp31243V1243FGttTtt11AY.690.000187
ORF1ab/nsp31243V1243FGttTtt11AY.700.000209
ORF1ab/nsp31243V1243FGttTtt11AY.710.000475
ORF1ab/nsp31243V1243FGttTtt11AY.730.000665
ORF1ab/nsp31243V1243FGttTtt11AY.890.004902
ORF1ab/nsp31243V1243FGttTtt11AY.980.000079
ORF1ab/nsp31243V1243FGttTtt11AY.990.001049
ORF1ab/nsp31243V1243FGttTtt11AY.99.10.001553
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1010.01
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1340.011364
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1530.001095
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1570.000913
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2180.007692
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2630.001558
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2650.003155
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2770.000759
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3050.003861
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3200.018182
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3260.001761
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3390.010526
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3620.005618
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3690.000446
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3860.066667
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4120.007634
ORF1ab/nsp31243V1243FGttTtt11B.1.1.470.005348
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4870.005587
ORF1ab/nsp31243V1243FGttTtt11B.1.1.5140.038462
ORF1ab/nsp31243V1243FGttTtt11B.1.1.540.003021
ORF1ab/nsp31243V1243FGttTtt11B.1.1110.001175
ORF1ab/nsp31243V1243FGttTtt11B.1.1700.00431
ORF1ab/nsp31243V1243FGttTtt11B.1.177.170.000821
ORF1ab/nsp31243V1243FGttTtt11B.1.177.210.000076
ORF1ab/nsp31243V1243FGttTtt11B.1.177.330.001645
ORF1ab/nsp31243V1243FGttTtt11B.1.177.420.000894
ORF1ab/nsp31243V1243FGttTtt11B.1.177.730.000566
ORF1ab/nsp31243V1243FGttTtt11B.1.177.770.000726
ORF1ab/nsp31243V1243FGttTtt11B.1.177.860.000183
ORF1ab/nsp31243V1243FGttTtt11B.1.177.870.000728
ORF1ab/nsp31243V1243FGttTtt11B.1.220.001318
ORF1ab/nsp31243V1243FGttTtt11B.1.2400.000216
ORF1ab/nsp31243V1243FGttTtt11B.1.2580.000067
ORF1ab/nsp31243V1243FGttTtt11B.1.258.170.000104
ORF1ab/nsp31243V1243FGttTtt11B.1.2790.000514
ORF1ab/nsp31243V1243FGttTtt11B.1.36.180.00042
ORF1ab/nsp31243V1243FGttTtt11B.1.36.350.002604
ORF1ab/nsp31243V1243FGttTtt11B.1.36.380.001642
ORF1ab/nsp31243V1243FGttTtt11B.1.3620.001541
ORF1ab/nsp31243V1243FGttTtt11B.1.3690.000285
ORF1ab/nsp31243V1243FGttTtt11B.1.3750.00082
ORF1ab/nsp31243V1243FGttTtt11B.1.3810.007812
ORF1ab/nsp31243V1243FGttTtt11B.1.3850.010638
ORF1ab/nsp31243V1243FGttTtt11B.1.4110.003704
ORF1ab/nsp31243V1243FGttTtt11B.1.415.10.007576
ORF1ab/nsp31243V1243FGttTtt11B.1.4530.003236
ORF1ab/nsp31243V1243FGttTtt11B.1.4590.004082
ORF1ab/nsp31243V1243FGttTtt11B.1.4650.003802
ORF1ab/nsp31243V1243FGttTtt11B.1.4990.00105
ORF1ab/nsp31243V1243FGttTtt11B.1.5250.000113
ORF1ab/nsp31243V1243FGttTtt11B.1.5600.00463
ORF1ab/nsp31243V1243FGttTtt11B.1.6000.005848
ORF1ab/nsp31243V1243FGttTtt11B.1.6060.006024
ORF1ab/nsp31243V1243FGttTtt11B.1.617.10.000129
ORF1ab/nsp31243V1243FGttTtt11B.1.617.30.002985
ORF1ab/nsp31243V1243FGttTtt11B.400.000364
ORF1ab/nsp31243V1243FGttTtt11D.30.005917
ORF1ab/nsp31243V1243FGttTtt11N.30.005814
ORF1ab/nsp31243V1243FGttTtt11N.50.001767
ORF1ab/nsp31243V1243FGttTtt11P.1.150.000232
ORF1ab/nsp31243V1243FGttTtt11P.1.20.001156
ORF1ab/nsp31243V1243FGttTtt11Q.30.000145
ORF1ab/nsp31243V1243FGttTtt11R.10.00009