CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1243

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31243V1243FV2061FnonsynGttTtt3665366516446-6448
ORF1ab/nsp31243V1243IV2061InonsynGttAtt112811270.9991146446-6448
ORF1ab/nsp31243V1243IV2061InonsynGtTAtC112810.0008865256446-6448
ORF1ab/nsp31243V1243delV2061deldelGTT---58158116446-6448
ORF1ab/nsp31243V1243VV2061VsyngtTgtC164790.4817076446-6448
ORF1ab/nsp31243V1243VV2061VsyngtTgtG164560.3414636446-6448
ORF1ab/nsp31243V1243VV2061VsyngtTgtA164290.1768296446-6448
ORF1ab/nsp31243V1243AV2061AnonsyngTtgCt959516446-6448
ORF1ab/nsp31243V1243LV2061LnonsynGttCtt767616446-6448
ORF1ab/nsp31243V1243GV2061GnonsyngTtgGt151516446-6448
ORF1ab/nsp31243V1243del1V2061del1delGtt-tt730.4285716446-6448
ORF1ab/nsp31243V1243del1V2061del1delgTtg-t720.2857146446-6448
ORF1ab/nsp31243V1243del1V2061del1delGTt-Wt710.1428576446-6448
ORF1ab/nsp31243V1243del1V2061del1delgtTgt-710.1428576446-6448
ORF1ab/nsp31243V1243MV2061MnonsynGtTAtG1116446-6448
ORF1ab/nsp31243V1243RV2061RnonsynGTtCGt1116446-6448
ORF1ab/nsp31243V1243DV2061DnonsyngTtgAt1116446-6448
ORF1ab/nsp31243V1243YV2061YnonsynGTtTAt1116446-6448

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31243V1243FGttTtt36653665All0.000701
ORF1ab/nsp31243V1243IGttAtt11271128All0.000216
ORF1ab/nsp31243V1243IGtTAtC11128All0
ORF1ab/nsp31243V1243FGttTtt675675B.1.1.70.000604
ORF1ab/nsp31243V1243delGTT---581581All0.000111
ORF1ab/nsp31243V1243delGTT---525525L.11
ORF1ab/nsp31243V1243IGttAtt326326AY.40.000507
ORF1ab/nsp31243V1243FGttTtt310310AY.40.000482
ORF1ab/nsp31243V1243FGttTtt283283B.1.10.005134
ORF1ab/nsp31243V1243IGttAtt248248B.1.1.70.000222
ORF1ab/nsp31243V1243FGttTtt239239AY.390.005906
ORF1ab/nsp31243V1243VgtTgtC79164All0.000015
ORF1ab/nsp31243V1243VgtTgtG56164All0.000011
ORF1ab/nsp31243V1243VgtTgtA29164All0.000006
ORF1ab/nsp31243V1243FGttTtt160160B.10.001466
ORF1ab/nsp31243V1243FGttTtt160160B.1.1770.002107
ORF1ab/nsp31243V1243FGttTtt131131B.1.20.001154
ORF1ab/nsp31243V1243FGttTtt114114AY.250.000686
ORF1ab/nsp31243V1243FGttTtt103103AY.1030.00064
ORF1ab/nsp31243V1243FGttTtt9999B.1.617.20.000373
ORF1ab/nsp31243V1243FGttTtt9898B.1.1.2140.005435
ORF1ab/nsp31243V1243AgTtgCt9595All0.000018
ORF1ab/nsp31243V1243IGttAtt8787B.1.5750.026396
ORF1ab/nsp31243V1243LGttCtt7676All0.000015
ORF1ab/nsp31243V1243FGttTtt7070B.1.1600.002183
ORF1ab/nsp31243V1243LGttCtt6969B.1.177.600.015072
ORF1ab/nsp31243V1243FGttTtt6666AY.430.000292
ORF1ab/nsp31243V1243FGttTtt6363D.20.004728
ORF1ab/nsp31243V1243IGttAtt6262B.10.000568
ORF1ab/nsp31243V1243FGttTtt5656AY.440.000341
ORF1ab/nsp31243V1243FGttTtt5353AY.270.00343
ORF1ab/nsp31243V1243FGttTtt5252B.1.360.007587
ORF1ab/nsp31243V1243FGttTtt4949P.10.000772
ORF1ab/nsp31243V1243FGttTtt4646B.1.1.740.198276
ORF1ab/nsp31243V1243FGttTtt3434B.1.177.70.005605
ORF1ab/nsp31243V1243FGttTtt3232B.1.1.390.01631
ORF1ab/nsp31243V1243IGttAtt2929B.1.617.20.000109
ORF1ab/nsp31243V1243FGttTtt2727B.1.4000.011583
ORF1ab/nsp31243V1243VgtTgtC2126AY.40.000033
ORF1ab/nsp31243V1243VgtTgtG526AY.40.000008
ORF1ab/nsp31243V1243FGttTtt2525AY.30.000249
ORF1ab/nsp31243V1243AgTtgCt2424B.1.1600.000749
ORF1ab/nsp31243V1243VgtTgtG2224B.1.20.000194
ORF1ab/nsp31243V1243VgtTgtC224B.1.20.000018
ORF1ab/nsp31243V1243IGttAtt2323AY.1030.000143
ORF1ab/nsp31243V1243FGttTtt2323B.1.4290.000541
ORF1ab/nsp31243V1243FGttTtt2323B.1.5260.000541
ORF1ab/nsp31243V1243IGttAtt2222B.1.20.000194
ORF1ab/nsp31243V1243FGttTtt2121AY.98.10.001017
ORF1ab/nsp31243V1243FGttTtt2121B.1.4430.098131
ORF1ab/nsp31243V1243IGttAtt2020AY.4.40.008183
ORF1ab/nsp31243V1243VgtTgtA1920B.1.10.000345
ORF1ab/nsp31243V1243VgtTgtC120B.1.10.000018
ORF1ab/nsp31243V1243IGttAtt1919AY.250.000114
ORF1ab/nsp31243V1243FGttTtt1919AY.610.001991
ORF1ab/nsp31243V1243FGttTtt1919B.1.1.2220.003876
ORF1ab/nsp31243V1243IGttAtt1818AY.390.000445
ORF1ab/nsp31243V1243VgtTgtG1018B.1.1.70.000009
ORF1ab/nsp31243V1243VgtTgtC618B.1.1.70.000005
ORF1ab/nsp31243V1243VgtTgtA218B.1.1.70.000002
ORF1ab/nsp31243V1243FGttTtt1818B.1.177.810.003408
ORF1ab/nsp31243V1243FGttTtt1717AY.1020.000451
ORF1ab/nsp31243V1243AgTtgCt1717B.1.2430.001183
ORF1ab/nsp31243V1243VgtTgtC1317B.1.617.20.000049
ORF1ab/nsp31243V1243VgtTgtG417B.1.617.20.000015
ORF1ab/nsp31243V1243GgTtgGt1515All0.000003
ORF1ab/nsp31243V1243FGttTtt1515AY.9.20.000551
ORF1ab/nsp31243V1243FGttTtt1414AY.4.20.000304
ORF1ab/nsp31243V1243FGttTtt1414B.1.4270.000707
ORF1ab/nsp31243V1243IGttAtt1313AY.430.000058
ORF1ab/nsp31243V1243FGttTtt1313AY.50.000268
ORF1ab/nsp31243V1243delGTT---1313B.10.000119
ORF1ab/nsp31243V1243FGttTtt1212AY.260.00034
ORF1ab/nsp31243V1243IGttAtt1212B.1.4200.125
ORF1ab/nsp31243V1243IGttAtt1111AY.270.000712
ORF1ab/nsp31243V1243IGttAtt1111AY.30.000109
ORF1ab/nsp31243V1243FGttTtt1111AY.4.40.004501
ORF1ab/nsp31243V1243IGttAtt1111AY.470.000342
ORF1ab/nsp31243V1243FGttTtt1111B.1.1.1120.647059
ORF1ab/nsp31243V1243FGttTtt1111C.370.001277
ORF1ab/nsp31243V1243FGttTtt1111P.1.70.003512
ORF1ab/nsp31243V1243FGttTtt1010AY.290.000158
ORF1ab/nsp31243V1243FGttTtt1010AY.330.000668
ORF1ab/nsp31243V1243IGttAtt1010AY.4.20.000217
ORF1ab/nsp31243V1243FGttTtt1010AY.850.004272
ORF1ab/nsp31243V1243FGttTtt1010B.1.2060.008157
ORF1ab/nsp31243V1243FGttTtt1010B.1.2340.001319
ORF1ab/nsp31243V1243FGttTtt99AY.1190.000318
ORF1ab/nsp31243V1243FGttTtt99AY.420.000362
ORF1ab/nsp31243V1243FGttTtt99AY.470.00028
ORF1ab/nsp31243V1243FGttTtt99AY.510.008182
ORF1ab/nsp31243V1243FGttTtt99B.1.1.4190.066667
ORF1ab/nsp31243V1243delGTT---99B.1.1.70.000008
ORF1ab/nsp31243V1243IGttAtt99B.1.4270.000454
ORF1ab/nsp31243V1243IGttAtt88AY.1020.000212
ORF1ab/nsp31243V1243FGttTtt88AY.360.001186
ORF1ab/nsp31243V1243FGttTtt88AY.90.000541
ORF1ab/nsp31243V1243IGttAtt88B.1.1770.000105
ORF1ab/nsp31243V1243AgTtgCt88B.1.1770.000105
ORF1ab/nsp31243V1243FGttTtt88B.1.4970.002518
ORF1ab/nsp31243V1243IGttAtt88P.10.000126
ORF1ab/nsp31243V1243del1Gtt-tt37All0.000001
ORF1ab/nsp31243V1243del1gTtg-t27All0
ORF1ab/nsp31243V1243del1gtTgt-17All0
ORF1ab/nsp31243V1243del1GTt-Wt17All0
ORF1ab/nsp31243V1243IGttAtt77AY.1060.002344
ORF1ab/nsp31243V1243IGttAtt77AY.290.00011
ORF1ab/nsp31243V1243FGttTtt77B.1.1.5190.000278
ORF1ab/nsp31243V1243FGttTtt77P.1.40.006836
ORF1ab/nsp31243V1243FGttTtt77Q.80.001154
ORF1ab/nsp31243V1243FGttTtt66AY.1000.000276
ORF1ab/nsp31243V1243FGttTtt66AY.200.000233
ORF1ab/nsp31243V1243IGttAtt66B.1.10.000109
ORF1ab/nsp31243V1243delGTT---66B.1.1.100.006689
ORF1ab/nsp31243V1243FGttTtt66B.1.4410.057692
ORF1ab/nsp31243V1243AgTtgCt66B.1.564.10.009464
ORF1ab/nsp31243V1243AgTtgCt66B.1.617.20.000023
ORF1ab/nsp31243V1243FGttTtt55AY.100.00265
ORF1ab/nsp31243V1243AgTtgCt55AY.1030.000031
ORF1ab/nsp31243V1243FGttTtt55AY.1170.000423
ORF1ab/nsp31243V1243FGttTtt55AY.1200.000186
ORF1ab/nsp31243V1243FGttTtt55AY.230.000349
ORF1ab/nsp31243V1243IGttAtt55AY.260.000142
ORF1ab/nsp31243V1243IGttAtt55AY.420.000201
ORF1ab/nsp31243V1243FGttTtt55AY.450.000608
ORF1ab/nsp31243V1243IGttAtt55AY.50.000103
ORF1ab/nsp31243V1243VgtTgtG35AY.540.000286
ORF1ab/nsp31243V1243VgtTgtC25AY.540.000191
ORF1ab/nsp31243V1243FGttTtt55AY.75.10.000902
ORF1ab/nsp31243V1243FGttTtt55B.1.3510.000149
ORF1ab/nsp31243V1243FGttTtt55B.1.36.360.00301
ORF1ab/nsp31243V1243IGttAtt44AY.1000.000184
ORF1ab/nsp31243V1243GgTtgGt44AY.200.000155
ORF1ab/nsp31243V1243FGttTtt44AY.210.00759
ORF1ab/nsp31243V1243IGttAtt44AY.330.000267
ORF1ab/nsp31243V1243delGTT---44AY.40.000006
ORF1ab/nsp31243V1243IGttAtt44AY.440.000024
ORF1ab/nsp31243V1243FGttTtt44AY.46.40.000658
ORF1ab/nsp31243V1243FGttTtt44AY.7.20.002237
ORF1ab/nsp31243V1243IGttAtt44AY.75.10.000721
ORF1ab/nsp31243V1243IGttAtt44AY.90.00027
ORF1ab/nsp31243V1243VgtTgtA44AY.910.002922
ORF1ab/nsp31243V1243FGttTtt44AY.920.001149
ORF1ab/nsp31243V1243FGttTtt44B.1.1.10.001307
ORF1ab/nsp31243V1243FGttTtt44B.1.1.280.001245
ORF1ab/nsp31243V1243delGTT---44B.1.1.5190.000159
ORF1ab/nsp31243V1243FGttTtt44B.1.177.570.001124
ORF1ab/nsp31243V1243GgTtgGt44B.1.20.000035
ORF1ab/nsp31243V1243FGttTtt44B.1.4320.044944
ORF1ab/nsp31243V1243IGttAtt44B.1.5680.004444
ORF1ab/nsp31243V1243FGttTtt44B.1.6210.000354
ORF1ab/nsp31243V1243IGttAtt44N.50.007067
ORF1ab/nsp31243V1243FGttTtt33A.2.50.001497
ORF1ab/nsp31243V1243VgtTgtG23AY.1030.000012
ORF1ab/nsp31243V1243VgtTgtC13AY.1030.000006
ORF1ab/nsp31243V1243IGttAtt33AY.1080.003308
ORF1ab/nsp31243V1243FGttTtt33AY.1160.00086
ORF1ab/nsp31243V1243IGttAtt33AY.1200.000112
ORF1ab/nsp31243V1243IGttAtt33AY.20.001068
ORF1ab/nsp31243V1243IGttAtt33AY.200.000117
ORF1ab/nsp31243V1243VgtTgtC23AY.250.000012
ORF1ab/nsp31243V1243VgtTgtG13AY.250.000006
ORF1ab/nsp31243V1243FGttTtt33AY.3.10.000256
ORF1ab/nsp31243V1243FGttTtt33AY.39.10.000119
ORF1ab/nsp31243V1243FGttTtt33AY.4.50.000322
ORF1ab/nsp31243V1243FGttTtt33AY.530.000863
ORF1ab/nsp31243V1243FGttTtt33AY.560.004815
ORF1ab/nsp31243V1243FGttTtt33AY.600.002814
ORF1ab/nsp31243V1243IGttAtt33AY.610.000314
ORF1ab/nsp31243V1243IGttAtt33AY.700.000626
ORF1ab/nsp31243V1243FGttTtt33B.1.1.2160.002671
ORF1ab/nsp31243V1243VgtTgtG33B.1.1.2220.000612
ORF1ab/nsp31243V1243FGttTtt33B.1.1.3180.000905
ORF1ab/nsp31243V1243AgTtgCt33B.1.1.70.000003
ORF1ab/nsp31243V1243FGttTtt33B.1.2430.000209
ORF1ab/nsp31243V1243IGttAtt33B.1.2430.000209
ORF1ab/nsp31243V1243IGttAtt33B.1.4290.000071
ORF1ab/nsp31243V1243IGttAtt33B.1.466.20.001174
ORF1ab/nsp31243V1243FGttTtt33B.1.5170.001281
ORF1ab/nsp31243V1243FGttTtt33B.1.5230.007353
ORF1ab/nsp31243V1243FGttTtt33B.1.5640.001278
ORF1ab/nsp31243V1243FGttTtt33B.1.5960.000261
ORF1ab/nsp31243V1243FGttTtt33B.1.6370.000219
ORF1ab/nsp31243V1243FGttTtt33B.330.06383
ORF1ab/nsp31243V1243FGttTtt33C.360.002732
ORF1ab/nsp31243V1243FGttTtt33P.1.140.000143
ORF1ab/nsp31243V1243FGttTtt22A.210.00554
ORF1ab/nsp31243V1243IGttAtt22A.23.10.001408
ORF1ab/nsp31243V1243AgTtgCt22AW.10.006098
ORF1ab/nsp31243V1243FGttTtt22AY.10.000791
ORF1ab/nsp31243V1243FGttTtt22AY.1100.000225
ORF1ab/nsp31243V1243FGttTtt22AY.1110.000366
ORF1ab/nsp31243V1243IGttAtt22AY.1140.000462
ORF1ab/nsp31243V1243IGttAtt22AY.1180.000125
ORF1ab/nsp31243V1243IGttAtt22AY.1190.000071
ORF1ab/nsp31243V1243FGttTtt22AY.1210.000271
ORF1ab/nsp31243V1243VgtTgtA22AY.130.000322
ORF1ab/nsp31243V1243FGttTtt22AY.16.10.00094
ORF1ab/nsp31243V1243VgtTgtG12AY.260.000028
ORF1ab/nsp31243V1243VgtTgtC12AY.260.000028
ORF1ab/nsp31243V1243VgtTgtC22AY.30.00002
ORF1ab/nsp31243V1243FGttTtt22AY.300.000791
ORF1ab/nsp31243V1243VgtTgtC22AY.330.000134
ORF1ab/nsp31243V1243FGttTtt22AY.340.000194
ORF1ab/nsp31243V1243IGttAtt22AY.360.000296
ORF1ab/nsp31243V1243IGttAtt22AY.4.50.000215
ORF1ab/nsp31243V1243VgtTgtC22AY.460.000208
ORF1ab/nsp31243V1243delGTT---22AY.470.000062
ORF1ab/nsp31243V1243IGttAtt22AY.5.30.000675
ORF1ab/nsp31243V1243FGttTtt22AY.550.001835
ORF1ab/nsp31243V1243IGttAtt22AY.670.000929
ORF1ab/nsp31243V1243FGttTtt22AY.670.000929
ORF1ab/nsp31243V1243FGttTtt22AY.750.000112
ORF1ab/nsp31243V1243IGttAtt22AY.810.003984
ORF1ab/nsp31243V1243FGttTtt22AY.99.20.000184
ORF1ab/nsp31243V1243FGttTtt22B0.000256
ORF1ab/nsp31243V1243VgtTgtC22B.10.000018
ORF1ab/nsp31243V1243AgTtgCt22B.10.000018
ORF1ab/nsp31243V1243delGTT---22B.1.10.000036
ORF1ab/nsp31243V1243IGttAtt22B.1.1.1590.009346
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3170.000823
ORF1ab/nsp31243V1243FGttTtt22B.1.1.330.000842
ORF1ab/nsp31243V1243FGttTtt22B.1.1.3540.008772
ORF1ab/nsp31243V1243FGttTtt22B.1.1.4340.000697
ORF1ab/nsp31243V1243AgTtgCt22B.1.1.5190.000079
ORF1ab/nsp31243V1243VgtTgtC22B.1.1.5190.000079
ORF1ab/nsp31243V1243FGttTtt22B.1.1.5260.007092
ORF1ab/nsp31243V1243GgTtgGt22B.1.1.70.000002
ORF1ab/nsp31243V1243del1GTt-Wt12B.1.1.70.000001
ORF1ab/nsp31243V1243del1Gtt-tt12B.1.1.70.000001
ORF1ab/nsp31243V1243IGttAtt22B.1.1600.000062
ORF1ab/nsp31243V1243LGttCtt22B.1.20.000018
ORF1ab/nsp31243V1243IGttAtt22B.1.2240.05
ORF1ab/nsp31243V1243IGttAtt22B.1.2580.000133
ORF1ab/nsp31243V1243AgTtgCt22B.1.258.140.001961
ORF1ab/nsp31243V1243FGttTtt22B.1.3240.00321
ORF1ab/nsp31243V1243IGttAtt22B.1.3510.000059
ORF1ab/nsp31243V1243FGttTtt22B.1.351.20.000605
ORF1ab/nsp31243V1243FGttTtt22B.1.3560.003454
ORF1ab/nsp31243V1243FGttTtt22B.1.36.20.021505
ORF1ab/nsp31243V1243FGttTtt22B.1.36.240.012346
ORF1ab/nsp31243V1243FGttTtt22B.1.36.290.001035
ORF1ab/nsp31243V1243FGttTtt22B.1.3670.001585
ORF1ab/nsp31243V1243FGttTtt22B.1.4560.006536
ORF1ab/nsp31243V1243FGttTtt22B.1.5400.019417
ORF1ab/nsp31243V1243FGttTtt22B.1.5460.007407
ORF1ab/nsp31243V1243AgTtgCt22B.1.5510.002581
ORF1ab/nsp31243V1243FGttTtt22B.1.5770.001375
ORF1ab/nsp31243V1243GgTtgGt22B.1.5950.000522
ORF1ab/nsp31243V1243FGttTtt22B.1.596.10.018692
ORF1ab/nsp31243V1243IGttAtt22B.1.6210.000177
ORF1ab/nsp31243V1243FGttTtt22B.1.6230.001073
ORF1ab/nsp31243V1243IGttAtt22P.1.150.000465
ORF1ab/nsp31243V1243IGttAtt22P.1.40.001953
ORF1ab/nsp31243V1243VgtTgtC22P.20.000373
ORF1ab/nsp31243V1243FGttTtt22P.20.000373
ORF1ab/nsp31243V1243IGttAtt22Q.80.00033
ORF1ab/nsp31243V1243FGttTtt11A.120.166667
ORF1ab/nsp31243V1243FGttTtt11A.270.001656
ORF1ab/nsp31243V1243FGttTtt11A.290.005319
ORF1ab/nsp31243V1243RGTtCGt11All0
ORF1ab/nsp31243V1243DgTtgAt11All0
ORF1ab/nsp31243V1243YGTtTAt11All0
ORF1ab/nsp31243V1243MGtTAtG11All0
ORF1ab/nsp31243V1243AgTtgCt11AY.1000.000046
ORF1ab/nsp31243V1243del1Gtt-tt11AY.1000.000046
ORF1ab/nsp31243V1243VgtTgtC11AY.1020.000027
ORF1ab/nsp31243V1243FGttTtt11AY.1040.001984
ORF1ab/nsp31243V1243FGttTtt11AY.1070.000466
ORF1ab/nsp31243V1243IGttAtt11AY.1090.00074
ORF1ab/nsp31243V1243GgTtgGt11AY.1100.000113
ORF1ab/nsp31243V1243IGttAtt11AY.1160.000287
ORF1ab/nsp31243V1243FGttTtt11AY.116.10.000311
ORF1ab/nsp31243V1243AgTtgCt11AY.1170.000085
ORF1ab/nsp31243V1243FGttTtt11AY.1180.000063
ORF1ab/nsp31243V1243VgtTgtC11AY.1180.000063
ORF1ab/nsp31243V1243VgtTgtC11AY.1190.000035
ORF1ab/nsp31243V1243FGttTtt11AY.120.10.000321
ORF1ab/nsp31243V1243IGttAtt11AY.1210.000135
ORF1ab/nsp31243V1243FGttTtt11AY.130.000161
ORF1ab/nsp31243V1243delGTT---11AY.140.000088
ORF1ab/nsp31243V1243IGttAtt11AY.23.10.000417
ORF1ab/nsp31243V1243delGTT---11AY.250.000006
ORF1ab/nsp31243V1243FGttTtt11AY.29.10.000221
ORF1ab/nsp31243V1243IGttAtt11AY.29.10.000221
ORF1ab/nsp31243V1243LGttCtt11AY.30.00001
ORF1ab/nsp31243V1243IGttAtt11AY.3.10.000085
ORF1ab/nsp31243V1243IGttAtt11AY.300.000396
ORF1ab/nsp31243V1243IGttAtt11AY.320.000532
ORF1ab/nsp31243V1243VgtTgtC11AY.340.000097
ORF1ab/nsp31243V1243VgtTgtC11AY.360.000148
ORF1ab/nsp31243V1243FGttTtt11AY.380.000499
ORF1ab/nsp31243V1243LGttCtt11AY.390.000025
ORF1ab/nsp31243V1243VgtTgtG11AY.390.000025
ORF1ab/nsp31243V1243MGtTAtG11AY.390.000025
ORF1ab/nsp31243V1243IGttAtt11AY.39.10.00004
ORF1ab/nsp31243V1243VgtTgtC11AY.39.10.00004
ORF1ab/nsp31243V1243AgTtgCt11AY.40.000002
ORF1ab/nsp31243V1243VgtTgtC11AY.4.20.000022
ORF1ab/nsp31243V1243IGttAtt11AY.4.2.10.000149
ORF1ab/nsp31243V1243FGttTtt11AY.4.30.000842
ORF1ab/nsp31243V1243delGTT---11AY.4.50.000107
ORF1ab/nsp31243V1243IGttAtt11AY.400.000964
ORF1ab/nsp31243V1243FGttTtt11AY.410.000294
ORF1ab/nsp31243V1243AgTtgCt11AY.430.000004
ORF1ab/nsp31243V1243AgTtgCt11AY.440.000006
ORF1ab/nsp31243V1243VgtTgtG11AY.440.000006
ORF1ab/nsp31243V1243RGTtCGt11AY.440.000006
ORF1ab/nsp31243V1243FGttTtt11AY.460.000104
ORF1ab/nsp31243V1243FGttTtt11AY.46.50.000198
ORF1ab/nsp31243V1243IGttAtt11AY.46.60.000072
ORF1ab/nsp31243V1243AgTtgCt11AY.480.000465
ORF1ab/nsp31243V1243FGttTtt11AY.5.30.000337
ORF1ab/nsp31243V1243FGttTtt11AY.5.40.000277
ORF1ab/nsp31243V1243IGttAtt11AY.5.40.000277
ORF1ab/nsp31243V1243IGttAtt11AY.540.000095
ORF1ab/nsp31243V1243IGttAtt11AY.590.00053
ORF1ab/nsp31243V1243FGttTtt11AY.60.000041
ORF1ab/nsp31243V1243AgTtgCt11AY.60.000041
ORF1ab/nsp31243V1243VgtTgtC11AY.60.000041
ORF1ab/nsp31243V1243FGttTtt11AY.630.000387
ORF1ab/nsp31243V1243FGttTtt11AY.650.000533
ORF1ab/nsp31243V1243delGTT---11AY.660.00107
ORF1ab/nsp31243V1243FGttTtt11AY.680.000274
ORF1ab/nsp31243V1243FGttTtt11AY.690.000187
ORF1ab/nsp31243V1243VgtTgtG11AY.7.20.000559
ORF1ab/nsp31243V1243FGttTtt11AY.700.000209
ORF1ab/nsp31243V1243FGttTtt11AY.710.000475
ORF1ab/nsp31243V1243FGttTtt11AY.730.000665
ORF1ab/nsp31243V1243VgtTgtG11AY.750.000056
ORF1ab/nsp31243V1243IGttAtt11AY.750.000056
ORF1ab/nsp31243V1243FGttTtt11AY.890.004902
ORF1ab/nsp31243V1243VgtTgtC11AY.9.20.000037
ORF1ab/nsp31243V1243IGttAtt11AY.980.000079
ORF1ab/nsp31243V1243FGttTtt11AY.980.000079
ORF1ab/nsp31243V1243delGTT---11AY.98.10.000048
ORF1ab/nsp31243V1243IGttAtt11AY.98.10.000048
ORF1ab/nsp31243V1243FGttTtt11AY.990.001049
ORF1ab/nsp31243V1243delGTT---11AY.990.001049
ORF1ab/nsp31243V1243FGttTtt11AY.99.10.001553
ORF1ab/nsp31243V1243IGttAtt11B0.000128
ORF1ab/nsp31243V1243DgTtgAt11B.10.000009
ORF1ab/nsp31243V1243del1gTtg-t11B.1.10.000018
ORF1ab/nsp31243V1243AgTtgCt11B.1.1.10.000327
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1010.01
ORF1ab/nsp31243V1243delGTT---11B.1.1.1330.008475
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1340.011364
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1530.001095
ORF1ab/nsp31243V1243FGttTtt11B.1.1.1570.000913
ORF1ab/nsp31243V1243VgtTgtA11B.1.1.1610.003534
ORF1ab/nsp31243V1243IGttAtt11B.1.1.2070.001182
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2180.007692
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2630.001558
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2650.003155
ORF1ab/nsp31243V1243IGttAtt11B.1.1.270.00565
ORF1ab/nsp31243V1243FGttTtt11B.1.1.2770.000759
ORF1ab/nsp31243V1243AgTtgCt11B.1.1.2940.001266
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3050.003861
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3200.018182
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3260.001761
ORF1ab/nsp31243V1243VgtTgtC11B.1.1.330.000421
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3390.010526
ORF1ab/nsp31243V1243delGTT---11B.1.1.3480.000796
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3620.005618
ORF1ab/nsp31243V1243IGttAtt11B.1.1.3690.000446
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3690.000446
ORF1ab/nsp31243V1243FGttTtt11B.1.1.3860.066667
ORF1ab/nsp31243V1243AgTtgCt11B.1.1.3890.006061
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4120.007634
ORF1ab/nsp31243V1243IGttAtt11B.1.1.4350.034483
ORF1ab/nsp31243V1243FGttTtt11B.1.1.470.005348
ORF1ab/nsp31243V1243FGttTtt11B.1.1.4870.005587
ORF1ab/nsp31243V1243FGttTtt11B.1.1.5140.038462
ORF1ab/nsp31243V1243FGttTtt11B.1.1.540.003021
ORF1ab/nsp31243V1243FGttTtt11B.1.1110.001175
ORF1ab/nsp31243V1243IGttAtt11B.1.1280.000635
ORF1ab/nsp31243V1243LGttCtt11B.1.1600.000031
ORF1ab/nsp31243V1243FGttTtt11B.1.1700.00431
ORF1ab/nsp31243V1243VgtTgtC11B.1.1770.000013
ORF1ab/nsp31243V1243del1Gtt-tt11B.1.1770.000013
ORF1ab/nsp31243V1243delGTT---11B.1.1770.000013
ORF1ab/nsp31243V1243LGttCtt11B.1.1770.000013
ORF1ab/nsp31243V1243AgTtgCt11B.1.177.160.000664
ORF1ab/nsp31243V1243FGttTtt11B.1.177.170.000821
ORF1ab/nsp31243V1243FGttTtt11B.1.177.210.000076
ORF1ab/nsp31243V1243FGttTtt11B.1.177.330.001645
ORF1ab/nsp31243V1243FGttTtt11B.1.177.420.000894
ORF1ab/nsp31243V1243delGTT---11B.1.177.510.004566
ORF1ab/nsp31243V1243IGttAtt11B.1.177.570.000281
ORF1ab/nsp31243V1243delGTT---11B.1.177.620.001192
ORF1ab/nsp31243V1243IGttAtt11B.1.177.70.000165
ORF1ab/nsp31243V1243delGTT---11B.1.177.70.000165
ORF1ab/nsp31243V1243FGttTtt11B.1.177.730.000566
ORF1ab/nsp31243V1243FGttTtt11B.1.177.770.000726
ORF1ab/nsp31243V1243delGTT---11B.1.177.830.001481
ORF1ab/nsp31243V1243FGttTtt11B.1.177.860.000183
ORF1ab/nsp31243V1243FGttTtt11B.1.177.870.000728
ORF1ab/nsp31243V1243del1gtTgt-11B.1.20.000009
ORF1ab/nsp31243V1243delGTT---11B.1.20.000009
ORF1ab/nsp31243V1243AgTtgCt11B.1.20.000009
ORF1ab/nsp31243V1243IGttAtt11B.1.2130.014925
ORF1ab/nsp31243V1243IGttAtt11B.1.214.10.02
ORF1ab/nsp31243V1243FGttTtt11B.1.220.001318
ORF1ab/nsp31243V1243GgTtgGt11B.1.2210.000071
ORF1ab/nsp31243V1243AgTtgCt11B.1.2320.000537
ORF1ab/nsp31243V1243IGttAtt11B.1.2340.000132
ORF1ab/nsp31243V1243IGttAtt11B.1.2400.000216
ORF1ab/nsp31243V1243FGttTtt11B.1.2400.000216
ORF1ab/nsp31243V1243FGttTtt11B.1.2580.000067
ORF1ab/nsp31243V1243FGttTtt11B.1.258.170.000104
ORF1ab/nsp31243V1243IGttAtt11B.1.2640.012346
ORF1ab/nsp31243V1243FGttTtt11B.1.2790.000514
ORF1ab/nsp31243V1243IGttAtt11B.1.3020.013333
ORF1ab/nsp31243V1243LGttCtt11B.1.3510.00003
ORF1ab/nsp31243V1243VgtTgtA11B.1.3510.00003
ORF1ab/nsp31243V1243VgtTgtC11B.1.351.20.000303
ORF1ab/nsp31243V1243VgtTgtC11B.1.360.000146
ORF1ab/nsp31243V1243IGttAtt11B.1.36.100.004785
ORF1ab/nsp31243V1243IGttAtt11B.1.36.170.000494
ORF1ab/nsp31243V1243FGttTtt11B.1.36.180.00042
ORF1ab/nsp31243V1243FGttTtt11B.1.36.350.002604
ORF1ab/nsp31243V1243FGttTtt11B.1.36.380.001642
ORF1ab/nsp31243V1243IGttAtt11B.1.36.380.001642
ORF1ab/nsp31243V1243FGttTtt11B.1.3620.001541
ORF1ab/nsp31243V1243FGttTtt11B.1.3690.000285
ORF1ab/nsp31243V1243FGttTtt11B.1.3750.00082
ORF1ab/nsp31243V1243FGttTtt11B.1.3810.007812
ORF1ab/nsp31243V1243FGttTtt11B.1.3850.010638
ORF1ab/nsp31243V1243FGttTtt11B.1.4110.003704
ORF1ab/nsp31243V1243FGttTtt11B.1.415.10.007576
ORF1ab/nsp31243V1243VgtTgtG11B.1.4290.000024
ORF1ab/nsp31243V1243AgTtgCt11B.1.4290.000024
ORF1ab/nsp31243V1243FGttTtt11B.1.4530.003236
ORF1ab/nsp31243V1243FGttTtt11B.1.4590.004082
ORF1ab/nsp31243V1243FGttTtt11B.1.4650.003802
ORF1ab/nsp31243V1243FGttTtt11B.1.4990.00105
ORF1ab/nsp31243V1243FGttTtt11B.1.5250.000113
ORF1ab/nsp31243V1243FGttTtt11B.1.5600.00463
ORF1ab/nsp31243V1243IGttAtt11B.1.5640.000426
ORF1ab/nsp31243V1243IGttAtt11B.1.5800.004065
ORF1ab/nsp31243V1243del1gTtg-t11B.1.5950.000261
ORF1ab/nsp31243V1243IGttAtt11B.1.5950.000261
ORF1ab/nsp31243V1243IGttAtt11B.1.5960.000087
ORF1ab/nsp31243V1243FGttTtt11B.1.6000.005848
ORF1ab/nsp31243V1243FGttTtt11B.1.6060.006024
ORF1ab/nsp31243V1243VgtTgtC11B.1.617.10.000129
ORF1ab/nsp31243V1243FGttTtt11B.1.617.10.000129
ORF1ab/nsp31243V1243delGTT---11B.1.617.20.000004
ORF1ab/nsp31243V1243FGttTtt11B.1.617.30.002985
ORF1ab/nsp31243V1243IGttAtt11B.1.6200.000946
ORF1ab/nsp31243V1243VgtTgtC11B.1.6210.000089
ORF1ab/nsp31243V1243IGttAtt11B.1.6230.000536
ORF1ab/nsp31243V1243IGttAtt11B.1.6370.000073
ORF1ab/nsp31243V1243FGttTtt11B.400.000364
ORF1ab/nsp31243V1243VgtTgtC11C.160.00106
ORF1ab/nsp31243V1243IGtTAtC11C.350.000774
ORF1ab/nsp31243V1243AgTtgCt11C.370.000116
ORF1ab/nsp31243V1243GgTtgGt11D.20.000075
ORF1ab/nsp31243V1243AgTtgCt11D.20.000075
ORF1ab/nsp31243V1243VgtTgtC11D.20.000075
ORF1ab/nsp31243V1243FGttTtt11D.30.005917
ORF1ab/nsp31243V1243FGttTtt11N.30.005814
ORF1ab/nsp31243V1243FGttTtt11N.50.001767
ORF1ab/nsp31243V1243delGTT---11P.10.000016
ORF1ab/nsp31243V1243YGTtTAt11P.10.000016
ORF1ab/nsp31243V1243VgtTgtC11P.1.150.000232
ORF1ab/nsp31243V1243FGttTtt11P.1.150.000232
ORF1ab/nsp31243V1243FGttTtt11P.1.20.001156
ORF1ab/nsp31243V1243IGttAtt11P.20.000187
ORF1ab/nsp31243V1243IGttAtt11Q.10.000126
ORF1ab/nsp31243V1243IGttAtt11Q.30.000145
ORF1ab/nsp31243V1243FGttTtt11Q.30.000145
ORF1ab/nsp31243V1243IGttAtt11R.10.00009
ORF1ab/nsp31243V1243FGttTtt11R.10.00009