CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1243 | V1243F | V2061F | nonsyn | Gtt | Ttt | 3665 | 3665 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243I | V2061I | nonsyn | Gtt | Att | 1128 | 1127 | 0.999114 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243I | V2061I | nonsyn | GtT | AtC | 1128 | 1 | 0.000886525 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243del | V2061del | del | GTT | --- | 581 | 581 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243V | V2061V | syn | gtT | gtC | 164 | 79 | 0.481707 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243V | V2061V | syn | gtT | gtG | 164 | 56 | 0.341463 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243V | V2061V | syn | gtT | gtA | 164 | 29 | 0.176829 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243A | V2061A | nonsyn | gTt | gCt | 95 | 95 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243L | V2061L | nonsyn | Gtt | Ctt | 76 | 76 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243G | V2061G | nonsyn | gTt | gGt | 15 | 15 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243del1 | V2061del1 | del | Gtt | -tt | 7 | 3 | 0.428571 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243del1 | V2061del1 | del | gTt | g-t | 7 | 2 | 0.285714 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243del1 | V2061del1 | del | GTt | -Wt | 7 | 1 | 0.142857 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243del1 | V2061del1 | del | gtT | gt- | 7 | 1 | 0.142857 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243M | V2061M | nonsyn | GtT | AtG | 1 | 1 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243R | V2061R | nonsyn | GTt | CGt | 1 | 1 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243D | V2061D | nonsyn | gTt | gAt | 1 | 1 | 1 | 6446-6448 |
ORF1ab/nsp3 | 1243 | V1243Y | V2061Y | nonsyn | GTt | TAt | 1 | 1 | 1 | 6446-6448 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3665 | 3665 | All | 0.000701 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1127 | 1128 | All | 0.000216 |
ORF1ab/nsp3 | 1243 | V1243I | GtT | AtC | 1 | 1128 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 675 | 675 | B.1.1.7 | 0.000604 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 581 | 581 | All | 0.000111 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 525 | 525 | L.1 | 1 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 326 | 326 | AY.4 | 0.000507 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 310 | 310 | AY.4 | 0.000482 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 283 | 283 | B.1.1 | 0.005134 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 248 | 248 | B.1.1.7 | 0.000222 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 239 | 239 | AY.39 | 0.005906 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 79 | 164 | All | 0.000015 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 56 | 164 | All | 0.000011 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 29 | 164 | All | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 160 | 160 | B.1 | 0.001466 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 160 | 160 | B.1.177 | 0.002107 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 131 | 131 | B.1.2 | 0.001154 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 114 | 114 | AY.25 | 0.000686 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 103 | 103 | AY.103 | 0.00064 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 99 | 99 | B.1.617.2 | 0.000373 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 98 | 98 | B.1.1.214 | 0.005435 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 95 | 95 | All | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 87 | 87 | B.1.575 | 0.026396 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 76 | 76 | All | 0.000015 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 70 | 70 | B.1.160 | 0.002183 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 69 | 69 | B.1.177.60 | 0.015072 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 66 | 66 | AY.43 | 0.000292 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 63 | 63 | D.2 | 0.004728 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 62 | 62 | B.1 | 0.000568 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 56 | 56 | AY.44 | 0.000341 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 53 | 53 | AY.27 | 0.00343 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 52 | 52 | B.1.36 | 0.007587 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 49 | 49 | P.1 | 0.000772 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 46 | 46 | B.1.1.74 | 0.198276 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 34 | 34 | B.1.177.7 | 0.005605 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 32 | 32 | B.1.1.39 | 0.01631 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 27 | 27 | B.1.400 | 0.011583 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 21 | 26 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 5 | 26 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 24 | 24 | B.1.160 | 0.000749 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 22 | 24 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 24 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 23 | 23 | B.1.429 | 0.000541 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 21 | 21 | AY.98.1 | 0.001017 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 21 | 21 | B.1.443 | 0.098131 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 20 | 20 | AY.4.4 | 0.008183 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 19 | 20 | B.1.1 | 0.000345 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 20 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 19 | 19 | AY.61 | 0.001991 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 19 | 19 | B.1.1.222 | 0.003876 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 10 | 18 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 6 | 18 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 2 | 18 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 18 | 18 | B.1.177.81 | 0.003408 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 17 | 17 | B.1.243 | 0.001183 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 13 | 17 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 4 | 17 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 15 | 15 | All | 0.000003 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 12 | 12 | B.1.420 | 0.125 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 11 | 11 | AY.27 | 0.000712 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 11 | 11 | AY.4.4 | 0.004501 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 11 | 11 | B.1.1.112 | 0.647059 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 11 | 11 | P.1.7 | 0.003512 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 10 | 10 | AY.85 | 0.004272 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 10 | 10 | B.1.206 | 0.008157 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 9 | 9 | AY.51 | 0.008182 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 9 | 9 | B.1.1.419 | 0.066667 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 8 | 8 | B.1.497 | 0.002518 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 1243 | V1243del1 | Gtt | -tt | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1243 | V1243del1 | gTt | g-t | 2 | 7 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243del1 | gtT | gt- | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243del1 | GTt | -Wt | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 6 | 6 | B.1.441 | 0.057692 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 6 | 6 | B.1.564.1 | 0.009464 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 3 | 5 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 5 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 5 | 5 | B.1.36.36 | 0.00301 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | AY.21 | 0.00759 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | B.1.432 | 0.044944 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | B.33 | 0.06383 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 2 | 2 | AW.1 | 0.006098 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1243 | V1243del1 | GTt | -Wt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1243 | V1243del1 | Gtt | -tt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.224 | 0.05 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.36.2 | 0.021505 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.596.1 | 0.018692 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | A.12 | 0.166667 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp3 | 1243 | V1243R | GTt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243D | gTt | gAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243Y | GTt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243M | GtT | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1243 | V1243del1 | Gtt | -tt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1243 | V1243M | GtT | AtG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243R | GTt | CGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1243 | V1243D | gTt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1243 | V1243del1 | gTt | g-t | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.339 | 0.010526 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.386 | 0.066667 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1243 | V1243del1 | Gtt | -tt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1243 | V1243del1 | gtT | gt- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp3 | 1243 | V1243L | Gtt | Ctt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1243 | V1243del1 | gTt | g-t | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1243 | V1243I | GtT | AtC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1243 | V1243G | gTt | gGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1243 | V1243A | gTt | gCt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1243 | V1243del | GTT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1243 | V1243Y | GTt | TAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1243 | V1243V | gtT | gtC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1243 | V1243I | Gtt | Att | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1243 | V1243F | Gtt | Ttt | 1 | 1 | R.1 | 0.00009 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|