CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1241

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31241K1241RK2059RnonsynaAaaGa823082280.9997576440-6442
ORF1ab/nsp31241K1241RK2059RnonsynaAAaGG823020.0002430136440-6442
ORF1ab/nsp31241K1241delK2059deldelAAA---58658616440-6442
ORF1ab/nsp31241K1241KK2059KsynaaAaaG44444416440-6442
ORF1ab/nsp31241K1241EK2059EnonsynAaaGaa16916916440-6442
ORF1ab/nsp31241K1241NK2059NnonsynaaAaaC72540.756440-6442
ORF1ab/nsp31241K1241NK2059NnonsynaaAaaT72180.256440-6442
ORF1ab/nsp31241K1241QK2059QnonsynAaaCaa33320.9696976440-6442
ORF1ab/nsp31241K1241QK2059QnonsynAaACaG3310.0303036440-6442
ORF1ab/nsp31241K1241TK2059TnonsynaAaaCa19180.9473686440-6442
ORF1ab/nsp31241K1241TK2059TnonsynaAAaCG1910.05263166440-6442
ORF1ab/nsp31241K1241IK2059InonsynaAaaTa6616440-6442
ORF1ab/nsp31241K1241del1K2059del1delAaa-aa6616440-6442
ORF1ab/nsp31241K1241XK2059XnonsynAaaTaa2216440-6442
ORF1ab/nsp31241K1241GK2059GnonsynAAAGGG1116440-6442
ORF1ab/nsp31241K1241PK2059PnonsynAAACCG1116440-6442

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31241K1241RaAaaGa82288230All0.001574
ORF1ab/nsp31241K1241RaAAaGG28230All0
ORF1ab/nsp31241K1241RaAaaGa74207420B.1.2340.979021
ORF1ab/nsp31241K1241delAAA---586586All0.000112
ORF1ab/nsp31241K1241delAAA---525525L.11
ORF1ab/nsp31241K1241KaaAaaG444444All0.000085
ORF1ab/nsp31241K1241RaAaaGa334334B.10.003059
ORF1ab/nsp31241K1241EAaaGaa169169All0.000032
ORF1ab/nsp31241K1241RaAaaGa165165B.1.20.001453
ORF1ab/nsp31241K1241EAaaGaa125125AY.1020.003314
ORF1ab/nsp31241K1241KaaAaaG9696B.1.4230.979592
ORF1ab/nsp31241K1241NaaAaaC5472All0.00001
ORF1ab/nsp31241K1241NaaAaaT1872All0.000003
ORF1ab/nsp31241K1241KaaAaaG6161B.1.1.70.000055
ORF1ab/nsp31241K1241KaaAaaG5454B.1.1770.000711
ORF1ab/nsp31241K1241KaaAaaG4545AY.40.00007
ORF1ab/nsp31241K1241RaAaaGa4040AY.250.000241
ORF1ab/nsp31241K1241KaaAaaG4040AY.60.001645
ORF1ab/nsp31241K1241RaAaaGa4040B.1.5960.003486
ORF1ab/nsp31241K1241KaaAaaG3737B.1.4290.000871
ORF1ab/nsp31241K1241QAaaCaa3233All0.000006
ORF1ab/nsp31241K1241QAaACaG133All0
ORF1ab/nsp31241K1241RaAaaGa3030AY.750.001681
ORF1ab/nsp31241K1241KaaAaaG2828P.10.000441
ORF1ab/nsp31241K1241NaaAaaC2626B.1.1.3470.472727
ORF1ab/nsp31241K1241KaaAaaG2424B.1.6310.080808
ORF1ab/nsp31241K1241RaAaaGa2121AY.40.000033
ORF1ab/nsp31241K1241TaAaaCa1819All0.000003
ORF1ab/nsp31241K1241TaAAaCG119All0
ORF1ab/nsp31241K1241RaAaaGa1616B.1.1.70.000014
ORF1ab/nsp31241K1241delAAA---1313B.10.000119
ORF1ab/nsp31241K1241RaAaaGa1212B.1.575.20.057692
ORF1ab/nsp31241K1241TaAaaCa1111B.1.1.70.00001
ORF1ab/nsp31241K1241NaaAaaT710B.1.1.70.000006
ORF1ab/nsp31241K1241NaaAaaC310B.1.1.70.000003
ORF1ab/nsp31241K1241RaAaaGa1010B.1.617.20.000038
ORF1ab/nsp31241K1241RaAaaGa99B.1.10.000163
ORF1ab/nsp31241K1241delAAA---99B.1.1.70.000008
ORF1ab/nsp31241K1241RaAaaGa99B.1.2400.00194
ORF1ab/nsp31241K1241QAaaCaa88B.1.20.00007
ORF1ab/nsp31241K1241RaAaaGa88B.1.2430.000557
ORF1ab/nsp31241K1241RaAaaGa88B.1.5950.002088
ORF1ab/nsp31241K1241KaaAaaG77B.10.000064
ORF1ab/nsp31241K1241KaaAaaG77B.1.10.000127
ORF1ab/nsp31241K1241RaAaaGa77B.1.2210.000497
ORF1ab/nsp31241K1241RaAaaGa77B.1.3960.00494
ORF1ab/nsp31241K1241del1Aaa-aa66All0.000001
ORF1ab/nsp31241K1241IaAaaTa66All0.000001
ORF1ab/nsp31241K1241EAaaGaa66AY.1170.000507
ORF1ab/nsp31241K1241QAaaCaa66AY.470.000187
ORF1ab/nsp31241K1241delAAA---66B.1.1.100.006689
ORF1ab/nsp31241K1241delAAA---55AY.40.000008
ORF1ab/nsp31241K1241QAaaCaa55B.1.1.70.000004
ORF1ab/nsp31241K1241EAaaGaa55B.1.1.70.000004
ORF1ab/nsp31241K1241EAaaGaa55B.1.1600.000156
ORF1ab/nsp31241K1241RaAaaGa55B.1.5410.022124
ORF1ab/nsp31241K1241RaAaaGa55B.1.5800.020325
ORF1ab/nsp31241K1241NaaAaaC44AY.1200.000149
ORF1ab/nsp31241K1241EAaaGaa44AY.300.001583
ORF1ab/nsp31241K1241KaaAaaG44AY.430.000018
ORF1ab/nsp31241K1241NaaAaaC44AY.430.000018
ORF1ab/nsp31241K1241RaAaaGa44AY.440.000024
ORF1ab/nsp31241K1241delAAA---44B.1.1.5190.000159
ORF1ab/nsp31241K1241RaAaaGa24B.1.1.5190.000079
ORF1ab/nsp31241K1241RaAAaGG24B.1.1.5190.000079
ORF1ab/nsp31241K1241NaaAaaC44B.1.1770.000053
ORF1ab/nsp31241K1241QAaaCaa44B.1.1770.000053
ORF1ab/nsp31241K1241RaAaaGa44B.1.3490.002859
ORF1ab/nsp31241K1241NaaAaaC44B.1.3510.000119
ORF1ab/nsp31241K1241NaaAaaC33AY.1030.000019
ORF1ab/nsp31241K1241KaaAaaG33AY.250.000018
ORF1ab/nsp31241K1241EAaaGaa33AY.250.000018
ORF1ab/nsp31241K1241delAAA---33AY.250.000018
ORF1ab/nsp31241K1241RaAaaGa33AY.30.00003
ORF1ab/nsp31241K1241NaaAaaT23AY.40.000003
ORF1ab/nsp31241K1241NaaAaaC13AY.40.000002
ORF1ab/nsp31241K1241KaaAaaG33AY.420.000121
ORF1ab/nsp31241K1241NaaAaaT23B.10.000018
ORF1ab/nsp31241K1241NaaAaaC13B.10.000009
ORF1ab/nsp31241K1241RaAaaGa33B.1.1.2310.009288
ORF1ab/nsp31241K1241RaAaaGa33B.1.2060.002447
ORF1ab/nsp31241K1241RaAaaGa33B.1.617.10.000387
ORF1ab/nsp31241K1241KaaAaaG33B.1.617.20.000011
ORF1ab/nsp31241K1241EAaaGaa33P.20.00056
ORF1ab/nsp31241K1241NaaAaaT33P.30.004785
ORF1ab/nsp31241K1241KaaAaaG33P.50.041096
ORF1ab/nsp31241K1241XAaaTaa22All0
ORF1ab/nsp31241K1241EAaaGaa22AY.270.000129
ORF1ab/nsp31241K1241KaaAaaG22AY.30.00002
ORF1ab/nsp31241K1241KaaAaaG22AY.390.000049
ORF1ab/nsp31241K1241QAaaCaa12AY.390.000025
ORF1ab/nsp31241K1241QAaACaG12AY.390.000025
ORF1ab/nsp31241K1241EAaaGaa22AY.40.000003
ORF1ab/nsp31241K1241delAAA---22AY.470.000062
ORF1ab/nsp31241K1241KaaAaaG22AY.50.000041
ORF1ab/nsp31241K1241RaAaaGa22AY.50.000041
ORF1ab/nsp31241K1241delAAA---22AY.540.000191
ORF1ab/nsp31241K1241del1Aaa-aa22B.10.000018
ORF1ab/nsp31241K1241EAaaGaa22B.10.000018
ORF1ab/nsp31241K1241QAaaCaa22B.10.000018
ORF1ab/nsp31241K1241TaAaaCa22B.10.000018
ORF1ab/nsp31241K1241delAAA---22B.1.10.000036
ORF1ab/nsp31241K1241QAaaCaa22B.1.10.000036
ORF1ab/nsp31241K1241KaaAaaG22B.1.1.5190.000079
ORF1ab/nsp31241K1241KaaAaaG22B.1.20.000018
ORF1ab/nsp31241K1241EAaaGaa22B.1.20.000018
ORF1ab/nsp31241K1241RaAaaGa22B.1.3240.00321
ORF1ab/nsp31241K1241RaAaaGa22B.1.3510.000059
ORF1ab/nsp31241K1241RaAaaGa22B.1.36.100.009569
ORF1ab/nsp31241K1241KaaAaaG22B.1.36.80.002
ORF1ab/nsp31241K1241RaAaaGa22B.1.4170.057143
ORF1ab/nsp31241K1241RaAaaGa22B.1.5690.028986
ORF1ab/nsp31241K1241RaAaaGa22B.1.6120.005305
ORF1ab/nsp31241K1241RaAaaGa22P.20.000373
ORF1ab/nsp31241K1241KaaAaaG22Q.40.00091
ORF1ab/nsp31241K1241RaAaaGa11A.20.000662
ORF1ab/nsp31241K1241EAaaGaa11A.2.40.003367
ORF1ab/nsp31241K1241PAAACCG11All0
ORF1ab/nsp31241K1241GAAAGGG11All0
ORF1ab/nsp31241K1241KaaAaaG11AY.1000.000046
ORF1ab/nsp31241K1241IaAaaTa11AY.1030.000006
ORF1ab/nsp31241K1241RaAaaGa11AY.1030.000006
ORF1ab/nsp31241K1241EAaaGaa11AY.1030.000006
ORF1ab/nsp31241K1241KaaAaaG11AY.1130.000142
ORF1ab/nsp31241K1241RaAaaGa11AY.1170.000085
ORF1ab/nsp31241K1241RaAaaGa11AY.1180.000063
ORF1ab/nsp31241K1241delAAA---11AY.140.000088
ORF1ab/nsp31241K1241NaaAaaT11AY.160.00038
ORF1ab/nsp31241K1241KaaAaaG11AY.160.00038
ORF1ab/nsp31241K1241KaaAaaG11AY.300.000396
ORF1ab/nsp31241K1241NaaAaaT11AY.360.000148
ORF1ab/nsp31241K1241QAaaCaa11AY.360.000148
ORF1ab/nsp31241K1241NaaAaaC11AY.390.000025
ORF1ab/nsp31241K1241TaAAaCG11AY.390.000025
ORF1ab/nsp31241K1241PAAACCG11AY.390.000025
ORF1ab/nsp31241K1241KaaAaaG11AY.39.10.00004
ORF1ab/nsp31241K1241IaAaaTa11AY.4.20.000022
ORF1ab/nsp31241K1241QAaaCaa11AY.4.20.000022
ORF1ab/nsp31241K1241KaaAaaG11AY.4.20.000022
ORF1ab/nsp31241K1241delAAA---11AY.4.50.000107
ORF1ab/nsp31241K1241IaAaaTa11AY.430.000004
ORF1ab/nsp31241K1241EAaaGaa11AY.430.000004
ORF1ab/nsp31241K1241EAaaGaa11AY.450.000122
ORF1ab/nsp31241K1241KaaAaaG11AY.46.10.001027
ORF1ab/nsp31241K1241TaAaaCa11AY.470.000031
ORF1ab/nsp31241K1241KaaAaaG11AY.470.000031
ORF1ab/nsp31241K1241RaAaaGa11AY.540.000095
ORF1ab/nsp31241K1241NaaAaaT11AY.580.000907
ORF1ab/nsp31241K1241RaAaaGa11AY.620.000436
ORF1ab/nsp31241K1241delAAA---11AY.660.00107
ORF1ab/nsp31241K1241KaaAaaG11AY.9.20.000037
ORF1ab/nsp31241K1241RaAaaGa11AY.9.20.000037
ORF1ab/nsp31241K1241EAaaGaa11AY.950.000761
ORF1ab/nsp31241K1241delAAA---11AY.98.10.000048
ORF1ab/nsp31241K1241delAAA---11AY.990.001049
ORF1ab/nsp31241K1241RaAaaGa11B0.000128
ORF1ab/nsp31241K1241NaaAaaC11B.1.10.000018
ORF1ab/nsp31241K1241delAAA---11B.1.1.1330.008475
ORF1ab/nsp31241K1241NaaAaaT11B.1.1.1760.000439
ORF1ab/nsp31241K1241QAaaCaa11B.1.1.2140.000055
ORF1ab/nsp31241K1241QAaaCaa11B.1.1.2160.00089
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.2220.000204
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.2440.015385
ORF1ab/nsp31241K1241KaaAaaG11B.1.1.250.000569
ORF1ab/nsp31241K1241KaaAaaG11B.1.1.2840.000107
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.3290.003846
ORF1ab/nsp31241K1241delAAA---11B.1.1.3480.000796
ORF1ab/nsp31241K1241EAaaGaa11B.1.1.3680.003086
ORF1ab/nsp31241K1241TaAaaCa11B.1.1.3690.000446
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.4480.002033
ORF1ab/nsp31241K1241TaAaaCa11B.1.1.470.005348
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.5070.008696
ORF1ab/nsp31241K1241RaAaaGa11B.1.1.5180.006329
ORF1ab/nsp31241K1241del1Aaa-aa11B.1.1.5190.00004
ORF1ab/nsp31241K1241IaAaaTa11B.1.1.70.000001
ORF1ab/nsp31241K1241del1Aaa-aa11B.1.1.70.000001
ORF1ab/nsp31241K1241RaAaaGa11B.1.1390.000733
ORF1ab/nsp31241K1241XAaaTaa11B.1.1600.000031
ORF1ab/nsp31241K1241TaAaaCa11B.1.1770.000013
ORF1ab/nsp31241K1241delAAA---11B.1.1770.000013
ORF1ab/nsp31241K1241delAAA---11B.1.177.510.004566
ORF1ab/nsp31241K1241delAAA---11B.1.177.620.001192
ORF1ab/nsp31241K1241delAAA---11B.1.177.70.000165
ORF1ab/nsp31241K1241RaAaaGa11B.1.177.730.000566
ORF1ab/nsp31241K1241delAAA---11B.1.177.830.001481
ORF1ab/nsp31241K1241RaAaaGa11B.1.1790.003759
ORF1ab/nsp31241K1241NaaAaaC11B.1.20.000009
ORF1ab/nsp31241K1241delAAA---11B.1.20.000009
ORF1ab/nsp31241K1241NaaAaaC11B.1.2210.000071
ORF1ab/nsp31241K1241RaAaaGa11B.1.2390.001221
ORF1ab/nsp31241K1241RaAaaGa11B.1.2480.029412
ORF1ab/nsp31241K1241RaAaaGa11B.1.2650.001271
ORF1ab/nsp31241K1241RaAaaGa11B.1.3050.002151
ORF1ab/nsp31241K1241RaAaaGa11B.1.3110.000275
ORF1ab/nsp31241K1241RaAaaGa11B.1.3250.006897
ORF1ab/nsp31241K1241RaAaaGa11B.1.360.000146
ORF1ab/nsp31241K1241EAaaGaa11B.1.360.000146
ORF1ab/nsp31241K1241RaAaaGa11B.1.36.260.002857
ORF1ab/nsp31241K1241EAaaGaa11B.1.3670.000792
ORF1ab/nsp31241K1241del1Aaa-aa11B.1.3690.000285
ORF1ab/nsp31241K1241RaAaaGa11B.1.3690.000285
ORF1ab/nsp31241K1241KaaAaaG11B.1.3700.008
ORF1ab/nsp31241K1241RaAaaGa11B.1.3750.00082
ORF1ab/nsp31241K1241RaAaaGa11B.1.4290.000024
ORF1ab/nsp31241K1241EAaaGaa11B.1.4290.000024
ORF1ab/nsp31241K1241RaAaaGa11B.1.4430.004673
ORF1ab/nsp31241K1241KaaAaaG11B.1.4970.000315
ORF1ab/nsp31241K1241RaAaaGa11B.1.5210.004975
ORF1ab/nsp31241K1241RaAaaGa11B.1.5260.000024
ORF1ab/nsp31241K1241TaAaaCa11B.1.5260.000024
ORF1ab/nsp31241K1241RaAaaGa11B.1.5560.007519
ORF1ab/nsp31241K1241RaAaaGa11B.1.5610.000397
ORF1ab/nsp31241K1241RaAaaGa11B.1.5660.019231
ORF1ab/nsp31241K1241RaAaaGa11B.1.5670.003333
ORF1ab/nsp31241K1241RaAaaGa11B.1.5770.000687
ORF1ab/nsp31241K1241RaAaaGa11B.1.5810.009434
ORF1ab/nsp31241K1241RaAaaGa11B.1.5900.004545
ORF1ab/nsp31241K1241del1Aaa-aa11B.1.5960.000087
ORF1ab/nsp31241K1241IaAaaTa11B.1.617.20.000004
ORF1ab/nsp31241K1241delAAA---11B.1.617.20.000004
ORF1ab/nsp31241K1241RaAaaGa11B.1.6210.000089
ORF1ab/nsp31241K1241RaAaaGa11B.1.780.008547
ORF1ab/nsp31241K1241XAaaTaa11B.400.000364
ORF1ab/nsp31241K1241IaAaaTa11B.400.000364
ORF1ab/nsp31241K1241RaAaaGa11C.350.000774
ORF1ab/nsp31241K1241EAaaGaa11D.20.000075
ORF1ab/nsp31241K1241KaaAaaG11D.20.000075
ORF1ab/nsp31241K1241RaAaaGa11D.20.000075
ORF1ab/nsp31241K1241delAAA---11P.10.000016
ORF1ab/nsp31241K1241GAAAGGG11P.10.000016
ORF1ab/nsp31241K1241RaAaaGa11P.10.000016
ORF1ab/nsp31241K1241RaAaaGa11P.1.10.000318
ORF1ab/nsp31241K1241KaaAaaG11P.1.120.000484