CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1241 | K1241R | K2059R | nonsyn | aAa | aGa | 8230 | 8228 | 0.999757 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241R | K2059R | nonsyn | aAA | aGG | 8230 | 2 | 0.000243013 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241del | K2059del | del | AAA | --- | 586 | 586 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241K | K2059K | syn | aaA | aaG | 444 | 444 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241E | K2059E | nonsyn | Aaa | Gaa | 169 | 169 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241N | K2059N | nonsyn | aaA | aaC | 72 | 54 | 0.75 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241N | K2059N | nonsyn | aaA | aaT | 72 | 18 | 0.25 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241Q | K2059Q | nonsyn | Aaa | Caa | 33 | 32 | 0.969697 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241Q | K2059Q | nonsyn | AaA | CaG | 33 | 1 | 0.030303 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241T | K2059T | nonsyn | aAa | aCa | 19 | 18 | 0.947368 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241T | K2059T | nonsyn | aAA | aCG | 19 | 1 | 0.0526316 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241I | K2059I | nonsyn | aAa | aTa | 6 | 6 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241del1 | K2059del1 | del | Aaa | -aa | 6 | 6 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241X | K2059X | nonsyn | Aaa | Taa | 2 | 2 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241G | K2059G | nonsyn | AAA | GGG | 1 | 1 | 1 | 6440-6442 |
ORF1ab/nsp3 | 1241 | K1241P | K2059P | nonsyn | AAA | CCG | 1 | 1 | 1 | 6440-6442 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 8228 | 8230 | All | 0.001574 |
ORF1ab/nsp3 | 1241 | K1241R | aAA | aGG | 2 | 8230 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 7420 | 7420 | B.1.234 | 0.979021 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 586 | 586 | All | 0.000112 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 525 | 525 | L.1 | 1 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 444 | 444 | All | 0.000085 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 334 | 334 | B.1 | 0.003059 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 169 | 169 | All | 0.000032 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 165 | 165 | B.1.2 | 0.001453 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 125 | 125 | AY.102 | 0.003314 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 96 | 96 | B.1.423 | 0.979592 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 54 | 72 | All | 0.00001 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 18 | 72 | All | 0.000003 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 54 | 54 | B.1.177 | 0.000711 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 40 | 40 | AY.25 | 0.000241 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 40 | 40 | AY.6 | 0.001645 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 40 | 40 | B.1.596 | 0.003486 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 37 | 37 | B.1.429 | 0.000871 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 32 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 1241 | K1241Q | AaA | CaG | 1 | 33 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 30 | 30 | AY.75 | 0.001681 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 26 | 26 | B.1.1.347 | 0.472727 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 24 | 24 | B.1.631 | 0.080808 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 18 | 19 | All | 0.000003 |
ORF1ab/nsp3 | 1241 | K1241T | aAA | aCG | 1 | 19 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 12 | 12 | B.1.575.2 | 0.057692 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 7 | 10 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 3 | 10 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 5 | 5 | B.1.541 | 0.022124 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 5 | 5 | B.1.580 | 0.020325 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 4 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1241 | K1241R | aAA | aGG | 2 | 4 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 3 | 3 | B.1.1.231 | 0.009288 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 3 | 3 | P.5 | 0.041096 |
ORF1ab/nsp3 | 1241 | K1241X | Aaa | Taa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1241 | K1241Q | AaA | CaG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.417 | 0.057143 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.569 | 0.028986 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1241 | K1241P | AAA | CCG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241G | AAA | GGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1241 | K1241T | aAA | aCG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1241 | K1241P | AAA | CCG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1241 | K1241Q | Aaa | Caa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1241 | K1241X | Aaa | Taa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1241 | K1241N | aaA | aaC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1241 | K1241T | aAa | aCa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1241 | K1241del1 | Aaa | -aa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1241 | K1241X | Aaa | Taa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1241 | K1241I | aAa | aTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1241 | K1241E | Aaa | Gaa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1241 | K1241del | AAA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1241 | K1241G | AAA | GGG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1241 | K1241R | aAa | aGa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1241 | K1241K | aaA | aaG | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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