CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1240

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31240Q1240delQ2058deldelCAG---58558516437-6439
ORF1ab/nsp31240Q1240HQ2058HnonsyncaGcaT5203050.5865386437-6439
ORF1ab/nsp31240Q1240HQ2058HnonsyncaGcaC5202150.4134626437-6439
ORF1ab/nsp31240Q1240KQ2058KnonsynCagAag47147116437-6439
ORF1ab/nsp31240Q1240QQ2058QsyncaGcaA21821816437-6439
ORF1ab/nsp31240Q1240RQ2058RnonsyncAgcGg10010016437-6439
ORF1ab/nsp31240Q1240XQ2058XnonsynCagTag151516437-6439
ORF1ab/nsp31240Q1240LQ2058LnonsyncAgcTg960.6666676437-6439
ORF1ab/nsp31240Q1240LQ2058LnonsyncAGcTA930.3333336437-6439
ORF1ab/nsp31240Q1240PQ2058PnonsyncAgcCg8816437-6439
ORF1ab/nsp31240Q1240del1Q2058del1delcaGca-530.66437-6439
ORF1ab/nsp31240Q1240del1Q2058del1delCag-ag510.26437-6439
ORF1ab/nsp31240Q1240del1Q2058del1delcAgc-g510.26437-6439
ORF1ab/nsp31240Q1240del2Q2058del2delcAGc--2216437-6439
ORF1ab/nsp31240Q1240SQ2058SnonsynCAGTCC210.56437-6439
ORF1ab/nsp31240Q1240SQ2058SnonsynCAgTCg210.56437-6439
ORF1ab/nsp31240Q1240WQ2058WnonsynCAgTGg1116437-6439
ORF1ab/nsp31240Q1240EQ2058EnonsynCagGag1116437-6439

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31240Q1240delCAG---585585All0.000112
ORF1ab/nsp31240Q1240delCAG---525525L.11
ORF1ab/nsp31240Q1240HcaGcaT305520All0.000058
ORF1ab/nsp31240Q1240HcaGcaC215520All0.000041
ORF1ab/nsp31240Q1240KCagAag471471All0.00009
ORF1ab/nsp31240Q1240KCagAag383383B.1.1.70.000343
ORF1ab/nsp31240Q1240QcaGcaA218218All0.000042
ORF1ab/nsp31240Q1240HcaGcaC203206AY.1030.00126
ORF1ab/nsp31240Q1240HcaGcaT3206AY.1030.000019
ORF1ab/nsp31240Q1240RcAgcGg100100All0.000019
ORF1ab/nsp31240Q1240HcaGcaT8989AY.40.000139
ORF1ab/nsp31240Q1240HcaGcaT7575AY.250.000451
ORF1ab/nsp31240Q1240HcaGcaT5959AY.900.040383
ORF1ab/nsp31240Q1240KCagAag4646B.1.1.2980.039655
ORF1ab/nsp31240Q1240HcaGcaT4141AY.700.008549
ORF1ab/nsp31240Q1240RcAgcGg2424B.1.1.70.000021
ORF1ab/nsp31240Q1240QcaGcaA2222B.1.1080.127907
ORF1ab/nsp31240Q1240QcaGcaA2222B.1.20.000194
ORF1ab/nsp31240Q1240QcaGcaA2121AY.470.000653
ORF1ab/nsp31240Q1240KCagAag1616Q.10.002021
ORF1ab/nsp31240Q1240XCagTag1515All0.000003
ORF1ab/nsp31240Q1240QcaGcaA1515AY.40.000023
ORF1ab/nsp31240Q1240QcaGcaA1515AY.46.60.001083
ORF1ab/nsp31240Q1240RcAgcGg1414AY.1030.000087
ORF1ab/nsp31240Q1240RcAgcGg1414AY.430.000062
ORF1ab/nsp31240Q1240delCAG---1414B.10.000128
ORF1ab/nsp31240Q1240QcaGcaA1313B.1.1.70.000012
ORF1ab/nsp31240Q1240KCagAag1111AY.4.10.008112
ORF1ab/nsp31240Q1240QcaGcaA1111AY.440.000067
ORF1ab/nsp31240Q1240QcaGcaA1010B.1.1.3750.119048
ORF1ab/nsp31240Q1240LcAgcTg69All0.000001
ORF1ab/nsp31240Q1240LcAGcTA39All0.000001
ORF1ab/nsp31240Q1240QcaGcaA99AY.30.00009
ORF1ab/nsp31240Q1240QcaGcaA99B.1.617.20.000034
ORF1ab/nsp31240Q1240PcAgcCg88All0.000002
ORF1ab/nsp31240Q1240HcaGcaT78B.10.000064
ORF1ab/nsp31240Q1240HcaGcaC18B.10.000009
ORF1ab/nsp31240Q1240delCAG---88B.1.1.70.000007
ORF1ab/nsp31240Q1240HcaGcaT58B.1.1.70.000004
ORF1ab/nsp31240Q1240HcaGcaC38B.1.1.70.000003
ORF1ab/nsp31240Q1240QcaGcaA77AY.250.000042
ORF1ab/nsp31240Q1240HcaGcaT67B.1.617.20.000023
ORF1ab/nsp31240Q1240HcaGcaC17B.1.617.20.000004
ORF1ab/nsp31240Q1240QcaGcaA66AY.1030.000037
ORF1ab/nsp31240Q1240QcaGcaA66B.10.000055
ORF1ab/nsp31240Q1240delCAG---66B.1.1.100.006689
ORF1ab/nsp31240Q1240del1caGca-35All0.000001
ORF1ab/nsp31240Q1240del1cAgc-g15All0
ORF1ab/nsp31240Q1240del1Cag-ag15All0
ORF1ab/nsp31240Q1240RcAgcGg55B.1.20.000044
ORF1ab/nsp31240Q1240QcaGcaA55B.1.3510.000149
ORF1ab/nsp31240Q1240RcAgcGg55B.1.617.20.000019
ORF1ab/nsp31240Q1240QcaGcaA44AY.260.000113
ORF1ab/nsp31240Q1240delCAG---44AY.40.000006
ORF1ab/nsp31240Q1240QcaGcaA44B.1.1.370.000771
ORF1ab/nsp31240Q1240delCAG---44B.1.1.5190.000159
ORF1ab/nsp31240Q1240LcAgcTg44B.1.1.70.000004
ORF1ab/nsp31240Q1240RcAgcGg44B.1.4270.000202
ORF1ab/nsp31240Q1240QcaGcaA33AY.1200.000112
ORF1ab/nsp31240Q1240delCAG---33AY.250.000018
ORF1ab/nsp31240Q1240HcaGcaT33AY.340.000291
ORF1ab/nsp31240Q1240RcAgcGg33B.10.000027
ORF1ab/nsp31240Q1240PcAgcCg33B.1.1.70.000003
ORF1ab/nsp31240Q1240KCagAag33B.1.20.000026
ORF1ab/nsp31240Q1240QcaGcaA33B.1.2400.000647
ORF1ab/nsp31240Q1240RcAgcGg33B.1.258.140.002941
ORF1ab/nsp31240Q1240QcaGcaA22A.20.001324
ORF1ab/nsp31240Q1240del2cAGc--22All0
ORF1ab/nsp31240Q1240SCAGTCC12All0
ORF1ab/nsp31240Q1240SCAgTCg12All0
ORF1ab/nsp31240Q1240RcAgcGg22AY.1200.000074
ORF1ab/nsp31240Q1240HcaGcaT22AY.120.2.10.000997
ORF1ab/nsp31240Q1240RcAgcGg22AY.30.00002
ORF1ab/nsp31240Q1240SCAgTCg12AY.390.000025
ORF1ab/nsp31240Q1240SCAGTCC12AY.390.000025
ORF1ab/nsp31240Q1240RcAgcGg22AY.40.000003
ORF1ab/nsp31240Q1240QcaGcaA22AY.430.000009
ORF1ab/nsp31240Q1240RcAgcGg22AY.440.000012
ORF1ab/nsp31240Q1240HcaGcaC22AY.440.000012
ORF1ab/nsp31240Q1240QcaGcaA22AY.450.000243
ORF1ab/nsp31240Q1240QcaGcaA22AY.460.000208
ORF1ab/nsp31240Q1240KCagAag22AY.460.000208
ORF1ab/nsp31240Q1240delCAG---22AY.470.000062
ORF1ab/nsp31240Q1240delCAG---22AY.540.000191
ORF1ab/nsp31240Q1240KCagAag22B.1.10.000036
ORF1ab/nsp31240Q1240delCAG---22B.1.10.000036
ORF1ab/nsp31240Q1240QcaGcaA22B.1.1.3690.000892
ORF1ab/nsp31240Q1240RcAgcGg22B.1.1.4160.00181
ORF1ab/nsp31240Q1240XCagTag22B.1.1.70.000002
ORF1ab/nsp31240Q1240QcaGcaA22B.1.1600.000062
ORF1ab/nsp31240Q1240XCagTag22B.1.20.000018
ORF1ab/nsp31240Q1240HcaGcaT12B.1.20.000009
ORF1ab/nsp31240Q1240HcaGcaC12B.1.20.000009
ORF1ab/nsp31240Q1240QcaGcaA22B.1.5260.000047
ORF1ab/nsp31240Q1240RcAgcGg22B.1.5880.00182
ORF1ab/nsp31240Q1240HcaGcaT22B.1.617.10.000258
ORF1ab/nsp31240Q1240PcAgcCg22B.1.617.20.000008
ORF1ab/nsp31240Q1240KCagAag22P.10.000032
ORF1ab/nsp31240Q1240LcAgcTg11AA.70.009174
ORF1ab/nsp31240Q1240ECagGag11All0
ORF1ab/nsp31240Q1240WCAgTGg11All0
ORF1ab/nsp31240Q1240QcaGcaA11AY.1000.000046
ORF1ab/nsp31240Q1240RcAgcGg11AY.1000.000046
ORF1ab/nsp31240Q1240RcAgcGg11AY.1160.000287
ORF1ab/nsp31240Q1240RcAgcGg11AY.1180.000063
ORF1ab/nsp31240Q1240PcAgcCg11AY.140.000088
ORF1ab/nsp31240Q1240QcaGcaA11AY.230.00007
ORF1ab/nsp31240Q1240XCagTag11AY.250.000006
ORF1ab/nsp31240Q1240QcaGcaA11AY.3.10.000085
ORF1ab/nsp31240Q1240RcAgcGg11AY.300.000396
ORF1ab/nsp31240Q1240RcAgcGg11AY.330.000067
ORF1ab/nsp31240Q1240RcAgcGg11AY.350.000233
ORF1ab/nsp31240Q1240HcaGcaT11AY.360.000148
ORF1ab/nsp31240Q1240HcaGcaT11AY.370.000316
ORF1ab/nsp31240Q1240HcaGcaT11AY.390.000025
ORF1ab/nsp31240Q1240QcaGcaA11AY.390.000025
ORF1ab/nsp31240Q1240RcAgcGg11AY.390.000025
ORF1ab/nsp31240Q1240KCagAag11AY.40.000002
ORF1ab/nsp31240Q1240LcAGcTA11AY.40.000002
ORF1ab/nsp31240Q1240XCagTag11AY.40.000002
ORF1ab/nsp31240Q1240delCAG---11AY.4.50.000107
ORF1ab/nsp31240Q1240HcaGcaT11AY.420.00004
ORF1ab/nsp31240Q1240del1Cag-ag11AY.430.000004
ORF1ab/nsp31240Q1240HcaGcaT11AY.430.000004
ORF1ab/nsp31240Q1240LcAGcTA11AY.430.000004
ORF1ab/nsp31240Q1240LcAgcTg11AY.440.000006
ORF1ab/nsp31240Q1240RcAgcGg11AY.460.000104
ORF1ab/nsp31240Q1240HcaGcaT11AY.50.000021
ORF1ab/nsp31240Q1240RcAgcGg11AY.5.30.000337
ORF1ab/nsp31240Q1240HcaGcaT11AY.590.00053
ORF1ab/nsp31240Q1240RcAgcGg11AY.630.000387
ORF1ab/nsp31240Q1240delCAG---11AY.660.00107
ORF1ab/nsp31240Q1240QcaGcaA11AY.880.000884
ORF1ab/nsp31240Q1240HcaGcaT11AY.9.20.000037
ORF1ab/nsp31240Q1240LcAGcTA11AY.980.000079
ORF1ab/nsp31240Q1240KCagAag11AY.98.10.000048
ORF1ab/nsp31240Q1240delCAG---11AY.98.10.000048
ORF1ab/nsp31240Q1240RcAgcGg11AY.98.10.000048
ORF1ab/nsp31240Q1240QcaGcaA11AY.98.10.000048
ORF1ab/nsp31240Q1240XCagTag11AY.98.10.000048
ORF1ab/nsp31240Q1240delCAG---11AY.990.001049
ORF1ab/nsp31240Q1240del1caGca-11B.10.000009
ORF1ab/nsp31240Q1240KCagAag11B.10.000009
ORF1ab/nsp31240Q1240HcaGcaT11B.1.10.000018
ORF1ab/nsp31240Q1240XCagTag11B.1.10.000018
ORF1ab/nsp31240Q1240QcaGcaA11B.1.10.000018
ORF1ab/nsp31240Q1240RcAgcGg11B.1.10.000018
ORF1ab/nsp31240Q1240del2cAGc--11B.1.10.000018
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1.10.000327
ORF1ab/nsp31240Q1240delCAG---11B.1.1.1330.008475
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1.2160.00089
ORF1ab/nsp31240Q1240KCagAag11B.1.1.3350.012987
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1.3420.0625
ORF1ab/nsp31240Q1240delCAG---11B.1.1.3480.000796
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1.3720.000689
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1.5190.00004
ORF1ab/nsp31240Q1240del2cAGc--11B.1.1.70.000001
ORF1ab/nsp31240Q1240PcAgcCg11B.1.1280.000635
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1420.002899
ORF1ab/nsp31240Q1240HcaGcaT11B.1.1600.000031
ORF1ab/nsp31240Q1240QcaGcaA11B.1.160.90.007194
ORF1ab/nsp31240Q1240delCAG---11B.1.1770.000013
ORF1ab/nsp31240Q1240QcaGcaA11B.1.1770.000013
ORF1ab/nsp31240Q1240del1caGca-11B.1.177.210.000076
ORF1ab/nsp31240Q1240ECagGag11B.1.177.210.000076
ORF1ab/nsp31240Q1240HcaGcaC11B.1.177.280.007407
ORF1ab/nsp31240Q1240delCAG---11B.1.177.510.004566
ORF1ab/nsp31240Q1240delCAG---11B.1.177.620.001192
ORF1ab/nsp31240Q1240delCAG---11B.1.177.70.000165
ORF1ab/nsp31240Q1240delCAG---11B.1.177.830.001481
ORF1ab/nsp31240Q1240del1cAgc-g11B.1.177.870.000728
ORF1ab/nsp31240Q1240delCAG---11B.1.20.000009
ORF1ab/nsp31240Q1240PcAgcCg11B.1.20.000009
ORF1ab/nsp31240Q1240XCagTag11B.1.2430.00007
ORF1ab/nsp31240Q1240RcAgcGg11B.1.2580.000067
ORF1ab/nsp31240Q1240del1caGca-11B.1.258.170.000104
ORF1ab/nsp31240Q1240QcaGcaA11B.1.3130.006579
ORF1ab/nsp31240Q1240XCagTag11B.1.351.30.000876
ORF1ab/nsp31240Q1240RcAgcGg11B.1.3670.000792
ORF1ab/nsp31240Q1240HcaGcaC11B.1.3960.000706
ORF1ab/nsp31240Q1240HcaGcaT11B.1.4290.000024
ORF1ab/nsp31240Q1240QcaGcaA11B.1.4290.000024
ORF1ab/nsp31240Q1240XCagTag11B.1.4290.000024
ORF1ab/nsp31240Q1240HcaGcaT11B.1.5260.000024
ORF1ab/nsp31240Q1240RcAgcGg11B.1.5440.006024
ORF1ab/nsp31240Q1240RcAgcGg11B.1.5500.013699
ORF1ab/nsp31240Q1240XCagTag11B.1.5760.000907
ORF1ab/nsp31240Q1240delCAG---11B.1.617.20.000004
ORF1ab/nsp31240Q1240KCagAag11B.1.617.20.000004
ORF1ab/nsp31240Q1240HcaGcaC11B.1.6210.000089
ORF1ab/nsp31240Q1240KCagAag11B.1.6370.000073
ORF1ab/nsp31240Q1240HcaGcaC11B.1.6370.000073
ORF1ab/nsp31240Q1240XCagTag11B.400.000364
ORF1ab/nsp31240Q1240XCagTag11B.6.60.000889
ORF1ab/nsp31240Q1240delCAG---11C.350.000774
ORF1ab/nsp31240Q1240QcaGcaA11D.20.000075
ORF1ab/nsp31240Q1240XCagTag11D.20.000075
ORF1ab/nsp31240Q1240WCAgTGg11P.10.000016
ORF1ab/nsp31240Q1240delCAG---11P.10.000016
ORF1ab/nsp31240Q1240QcaGcaA11P.1.140.000048