CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1240 | Q1240del | Q2058del | del | CAG | --- | 585 | 585 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240H | Q2058H | nonsyn | caG | caT | 520 | 305 | 0.586538 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240H | Q2058H | nonsyn | caG | caC | 520 | 215 | 0.413462 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240K | Q2058K | nonsyn | Cag | Aag | 471 | 471 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240Q | Q2058Q | syn | caG | caA | 218 | 218 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240R | Q2058R | nonsyn | cAg | cGg | 100 | 100 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240X | Q2058X | nonsyn | Cag | Tag | 15 | 15 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240L | Q2058L | nonsyn | cAg | cTg | 9 | 6 | 0.666667 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240L | Q2058L | nonsyn | cAG | cTA | 9 | 3 | 0.333333 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240P | Q2058P | nonsyn | cAg | cCg | 8 | 8 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240del1 | Q2058del1 | del | caG | ca- | 5 | 3 | 0.6 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240del1 | Q2058del1 | del | Cag | -ag | 5 | 1 | 0.2 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240del1 | Q2058del1 | del | cAg | c-g | 5 | 1 | 0.2 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240del2 | Q2058del2 | del | cAG | c-- | 2 | 2 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240S | Q2058S | nonsyn | CAG | TCC | 2 | 1 | 0.5 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240S | Q2058S | nonsyn | CAg | TCg | 2 | 1 | 0.5 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240W | Q2058W | nonsyn | CAg | TGg | 1 | 1 | 1 | 6437-6439 |
ORF1ab/nsp3 | 1240 | Q1240E | Q2058E | nonsyn | Cag | Gag | 1 | 1 | 1 | 6437-6439 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 585 | 585 | All | 0.000112 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 525 | 525 | L.1 | 1 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 305 | 520 | All | 0.000058 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 215 | 520 | All | 0.000041 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 471 | 471 | All | 0.00009 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 383 | 383 | B.1.1.7 | 0.000343 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 218 | 218 | All | 0.000042 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 203 | 206 | AY.103 | 0.00126 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 3 | 206 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 100 | 100 | All | 0.000019 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 89 | 89 | AY.4 | 0.000139 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 75 | 75 | AY.25 | 0.000451 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 59 | 59 | AY.90 | 0.040383 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 46 | 46 | B.1.1.298 | 0.039655 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 41 | 41 | AY.70 | 0.008549 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 22 | 22 | B.1.108 | 0.127907 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 21 | 21 | AY.47 | 0.000653 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 15 | 15 | All | 0.000003 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 11 | 11 | AY.4.1 | 0.008112 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 10 | 10 | B.1.1.375 | 0.119048 |
ORF1ab/nsp3 | 1240 | Q1240L | cAg | cTg | 6 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 1240 | Q1240L | cAG | cTA | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 7 | 8 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 5 | 8 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 3 | 8 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1240 | Q1240del1 | caG | ca- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1240 | Q1240del1 | cAg | c-g | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240del1 | Cag | -ag | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1240 | Q1240L | cAg | cTg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 1240 | Q1240del2 | cAG | c-- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240S | CAG | TCC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240S | CAg | TCg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1240 | Q1240S | CAg | TCg | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1240 | Q1240S | CAG | TCC | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1240 | Q1240L | cAg | cTg | 1 | 1 | AA.7 | 0.009174 |
ORF1ab/nsp3 | 1240 | Q1240E | Cag | Gag | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240W | CAg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1240 | Q1240L | cAG | cTA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1240 | Q1240del1 | Cag | -ag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240L | cAG | cTA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240L | cAg | cTg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1240 | Q1240L | cAG | cTA | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1240 | Q1240del1 | caG | ca- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240del2 | cAG | c-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1.342 | 0.0625 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1240 | Q1240del2 | cAG | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1240 | Q1240del1 | caG | ca- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1240 | Q1240E | Cag | Gag | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1240 | Q1240del1 | cAg | c-g | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240P | cAg | cCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1240 | Q1240del1 | caG | ca- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1240 | Q1240R | cAg | cGg | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1240 | Q1240K | Cag | Aag | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1240 | Q1240H | caG | caC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1240 | Q1240X | Cag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1240 | Q1240W | CAg | TGg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1240 | Q1240del | CAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1240 | Q1240Q | caG | caA | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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