CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1239 & Codon = aCa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31239I1239TI2057TnonsynaTaaCa61061016434-6436

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31239I1239TaTaaCa610610All0.000117
ORF1ab/nsp31239I1239TaTaaCa116116AY.40.000181
ORF1ab/nsp31239I1239TaTaaCa108108B.1.1.70.000097
ORF1ab/nsp31239I1239TaTaaCa5656B.1.110.30.04023
ORF1ab/nsp31239I1239TaTaaCa4848B.1.617.20.000181
ORF1ab/nsp31239I1239TaTaaCa3535B.1.1600.001092
ORF1ab/nsp31239I1239TaTaaCa3030B.1.1.3550.461538
ORF1ab/nsp31239I1239TaTaaCa1616AY.98.10.000775
ORF1ab/nsp31239I1239TaTaaCa1414B.10.000128
ORF1ab/nsp31239I1239TaTaaCa1313AY.1030.000081
ORF1ab/nsp31239I1239TaTaaCa1212B.1.5311
ORF1ab/nsp31239I1239TaTaaCa99AY.290.000142
ORF1ab/nsp31239I1239TaTaaCa99B.1.1.3260.015845
ORF1ab/nsp31239I1239TaTaaCa77AY.430.000031
ORF1ab/nsp31239I1239TaTaaCa77B.1.4270.000353
ORF1ab/nsp31239I1239TaTaaCa77B.1.5370.14
ORF1ab/nsp31239I1239TaTaaCa55AY.1000.00023
ORF1ab/nsp31239I1239TaTaaCa55AY.1020.000133
ORF1ab/nsp31239I1239TaTaaCa44AY.250.000024
ORF1ab/nsp31239I1239TaTaaCa44AY.46.40.000658
ORF1ab/nsp31239I1239TaTaaCa44AY.580.00363
ORF1ab/nsp31239I1239TaTaaCa44AY.830.006897
ORF1ab/nsp31239I1239TaTaaCa44B.1.1.5160.266667
ORF1ab/nsp31239I1239TaTaaCa44B.1.20.000035
ORF1ab/nsp31239I1239TaTaaCa44B.1.5260.000094
ORF1ab/nsp31239I1239TaTaaCa44B.1.5950.001044
ORF1ab/nsp31239I1239TaTaaCa33A0.001161
ORF1ab/nsp31239I1239TaTaaCa33AY.1180.000188
ORF1ab/nsp31239I1239TaTaaCa33AY.1210.000406
ORF1ab/nsp31239I1239TaTaaCa33AY.200.000117
ORF1ab/nsp31239I1239TaTaaCa33AY.440.000018
ORF1ab/nsp31239I1239TaTaaCa33AY.530.000863
ORF1ab/nsp31239I1239TaTaaCa33AY.570.001969
ORF1ab/nsp31239I1239TaTaaCa33AY.610.000314
ORF1ab/nsp31239I1239TaTaaCa33P.10.000047
ORF1ab/nsp31239I1239TaTaaCa22AY.1200.000074
ORF1ab/nsp31239I1239TaTaaCa22AY.230.000139
ORF1ab/nsp31239I1239TaTaaCa22AY.4.20.000043
ORF1ab/nsp31239I1239TaTaaCa22AY.46.30.001867
ORF1ab/nsp31239I1239TaTaaCa22B.1.1.2840.000215
ORF1ab/nsp31239I1239TaTaaCa22B.1.1.3180.000604
ORF1ab/nsp31239I1239TaTaaCa22B.1.2580.000133
ORF1ab/nsp31239I1239TaTaaCa22B.1.258.110.000793
ORF1ab/nsp31239I1239TaTaaCa22B.1.3050.004301
ORF1ab/nsp31239I1239TaTaaCa22B.1.36.220.002415
ORF1ab/nsp31239I1239TaTaaCa22C.36.30.001134
ORF1ab/nsp31239I1239TaTaaCa11AD.20.000219
ORF1ab/nsp31239I1239TaTaaCa11AY.1160.000287
ORF1ab/nsp31239I1239TaTaaCa11AY.116.10.000311
ORF1ab/nsp31239I1239TaTaaCa11AY.140.000088
ORF1ab/nsp31239I1239TaTaaCa11AY.30.00001
ORF1ab/nsp31239I1239TaTaaCa11AY.320.000532
ORF1ab/nsp31239I1239TaTaaCa11AY.34.10.00051
ORF1ab/nsp31239I1239TaTaaCa11AY.360.000148
ORF1ab/nsp31239I1239TaTaaCa11AY.390.000025
ORF1ab/nsp31239I1239TaTaaCa11AY.50.000021
ORF1ab/nsp31239I1239TaTaaCa11AY.60.000041
ORF1ab/nsp31239I1239TaTaaCa11AY.600.000938
ORF1ab/nsp31239I1239TaTaaCa11AY.980.000079
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.280.000311
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.3510.002793
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.4070.041667
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.4090.002833
ORF1ab/nsp31239I1239TaTaaCa11B.1.1770.000013
ORF1ab/nsp31239I1239TaTaaCa11B.1.177.210.000076
ORF1ab/nsp31239I1239TaTaaCa11B.1.2210.000071
ORF1ab/nsp31239I1239TaTaaCa11B.1.2390.001221
ORF1ab/nsp31239I1239TaTaaCa11B.1.2430.00007
ORF1ab/nsp31239I1239TaTaaCa11B.1.36.160.001425
ORF1ab/nsp31239I1239TaTaaCa11B.1.3960.000706
ORF1ab/nsp31239I1239TaTaaCa11B.1.4290.000024
ORF1ab/nsp31239I1239TaTaaCa11B.1.4920.007042
ORF1ab/nsp31239I1239TaTaaCa11B.1.5240.001406
ORF1ab/nsp31239I1239TaTaaCa11B.1.5640.000426
ORF1ab/nsp31239I1239TaTaaCa11D.20.000075
ORF1ab/nsp31239I1239TaTaaCa11N.50.001767
ORF1ab/nsp31239I1239TaTaaCa11P.1.10.000318
ORF1ab/nsp31239I1239TaTaaCa11P.1.40.000977