CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1239

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31239I1239TI2057TnonsynaTaaCa61061016434-6436
ORF1ab/nsp31239I1239delI2057deldelATA---56956916434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtaTta1771680.9491536434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtaCta17770.0395486434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtACtG17710.005649726434-6436
ORF1ab/nsp31239I1239LI2057LnonsynAtACtC17710.005649726434-6436
ORF1ab/nsp31239I1239MI2057MnonsynatAatG14114116434-6436
ORF1ab/nsp31239I1239VI2057VnonsynAtaGta1241220.9838716434-6436
ORF1ab/nsp31239I1239VI2057VnonsynAtAGtC12410.008064526434-6436
ORF1ab/nsp31239I1239VI2057VnonsynAtAGtG12410.008064526434-6436
ORF1ab/nsp31239I1239KI2057KnonsynaTaaAa121216434-6436
ORF1ab/nsp31239I1239del1I2057del1delatAat-850.6256434-6436
ORF1ab/nsp31239I1239del1I2057del1delAta-ta810.1256434-6436
ORF1ab/nsp31239I1239del1I2057del1delaTaa-a810.1256434-6436
ORF1ab/nsp31239I1239del1I2057del1delaTAaC-810.1256434-6436
ORF1ab/nsp31239I1239RI2057RnonsynaTaaGa6616434-6436
ORF1ab/nsp31239I1239del2I2057del2delaTAa--3316434-6436
ORF1ab/nsp31239I1239II2057IsynatAatC1116434-6436

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31239I1239TaTaaCa610610All0.000117
ORF1ab/nsp31239I1239delATA---569569All0.000109
ORF1ab/nsp31239I1239delATA---525525L.11
ORF1ab/nsp31239I1239LAtaTta168177All0.000032
ORF1ab/nsp31239I1239LAtaCta7177All0.000001
ORF1ab/nsp31239I1239LAtACtC1177All0
ORF1ab/nsp31239I1239LAtACtG1177All0
ORF1ab/nsp31239I1239MatAatG141141All0.000027
ORF1ab/nsp31239I1239VAtaGta122124All0.000023
ORF1ab/nsp31239I1239VAtAGtC1124All0
ORF1ab/nsp31239I1239VAtAGtG1124All0
ORF1ab/nsp31239I1239TaTaaCa116116AY.40.000181
ORF1ab/nsp31239I1239TaTaaCa108108B.1.1.70.000097
ORF1ab/nsp31239I1239LAtaTta6262B.1.4290.001459
ORF1ab/nsp31239I1239TaTaaCa5656B.1.110.30.04023
ORF1ab/nsp31239I1239LAtaTta5555B.1.6370.004019
ORF1ab/nsp31239I1239MatAatG4949AY.250.000295
ORF1ab/nsp31239I1239TaTaaCa4848B.1.617.20.000181
ORF1ab/nsp31239I1239TaTaaCa3535B.1.1600.001092
ORF1ab/nsp31239I1239TaTaaCa3030B.1.1.3550.461538
ORF1ab/nsp31239I1239LAtaTta2222B.1.1.70.00002
ORF1ab/nsp31239I1239MatAatG2121B.1.360.003064
ORF1ab/nsp31239I1239VAtaGta2020B.1.1.70.000018
ORF1ab/nsp31239I1239VAtaGta1919AY.430.000084
ORF1ab/nsp31239I1239TaTaaCa1616AY.98.10.000775
ORF1ab/nsp31239I1239TaTaaCa1414B.10.000128
ORF1ab/nsp31239I1239TaTaaCa1313AY.1030.000081
ORF1ab/nsp31239I1239KaTaaAa1212All0.000002
ORF1ab/nsp31239I1239MatAatG1212AY.440.000073
ORF1ab/nsp31239I1239TaTaaCa1212B.1.5311
ORF1ab/nsp31239I1239VAtaGta1111AY.30.000109
ORF1ab/nsp31239I1239VAtaGta1111B.1.617.20.000041
ORF1ab/nsp31239I1239MatAatG1010B.1.2340.001319
ORF1ab/nsp31239I1239MatAatG1010B.1.617.20.000038
ORF1ab/nsp31239I1239TaTaaCa99AY.290.000142
ORF1ab/nsp31239I1239TaTaaCa99B.1.1.3260.015845
ORF1ab/nsp31239I1239del1atAat-58All0.000001
ORF1ab/nsp31239I1239del1Ata-ta18All0
ORF1ab/nsp31239I1239del1aTaa-a18All0
ORF1ab/nsp31239I1239del1aTAaC-18All0
ORF1ab/nsp31239I1239VAtaGta88AY.40.000012
ORF1ab/nsp31239I1239KaTaaAa88B.1.5700.023529
ORF1ab/nsp31239I1239TaTaaCa77AY.430.000031
ORF1ab/nsp31239I1239TaTaaCa77B.1.4270.000353
ORF1ab/nsp31239I1239TaTaaCa77B.1.5370.14
ORF1ab/nsp31239I1239RaTaaGa66All0.000001
ORF1ab/nsp31239I1239delATA---66B.1.1.100.006689
ORF1ab/nsp31239I1239TaTaaCa55AY.1000.00023
ORF1ab/nsp31239I1239TaTaaCa55AY.1020.000133
ORF1ab/nsp31239I1239MatAatG55AY.290.000079
ORF1ab/nsp31239I1239MatAatG55B.1.1.70.000004
ORF1ab/nsp31239I1239VAtaGta44AY.1030.000025
ORF1ab/nsp31239I1239VAtaGta44AY.250.000024
ORF1ab/nsp31239I1239TaTaaCa44AY.250.000024
ORF1ab/nsp31239I1239MatAatG44AY.40.000006
ORF1ab/nsp31239I1239VAtaGta44AY.440.000024
ORF1ab/nsp31239I1239TaTaaCa44AY.46.40.000658
ORF1ab/nsp31239I1239TaTaaCa44AY.580.00363
ORF1ab/nsp31239I1239TaTaaCa44AY.830.006897
ORF1ab/nsp31239I1239LAtaTta44B.10.000037
ORF1ab/nsp31239I1239TaTaaCa44B.1.1.5160.266667
ORF1ab/nsp31239I1239delATA---44B.1.1.5190.000159
ORF1ab/nsp31239I1239delATA---44B.1.1.70.000004
ORF1ab/nsp31239I1239LAtaTta44B.1.1770.000053
ORF1ab/nsp31239I1239TaTaaCa44B.1.20.000035
ORF1ab/nsp31239I1239LAtaTta44B.1.3110.001098
ORF1ab/nsp31239I1239TaTaaCa44B.1.5260.000094
ORF1ab/nsp31239I1239TaTaaCa44B.1.5950.001044
ORF1ab/nsp31239I1239TaTaaCa33A0.001161
ORF1ab/nsp31239I1239VAtaGta33A.2.50.001497
ORF1ab/nsp31239I1239LAtaTta33AD.20.000657
ORF1ab/nsp31239I1239del2aTAa--33All0.000001
ORF1ab/nsp31239I1239VAtaGta33AY.1020.00008
ORF1ab/nsp31239I1239TaTaaCa33AY.1180.000188
ORF1ab/nsp31239I1239TaTaaCa33AY.1210.000406
ORF1ab/nsp31239I1239TaTaaCa33AY.200.000117
ORF1ab/nsp31239I1239delATA---33AY.250.000018
ORF1ab/nsp31239I1239VAtaGta33AY.290.000047
ORF1ab/nsp31239I1239MatAatG33AY.30.00003
ORF1ab/nsp31239I1239VAtaGta13AY.390.000025
ORF1ab/nsp31239I1239VAtAGtG13AY.390.000025
ORF1ab/nsp31239I1239VAtAGtC13AY.390.000025
ORF1ab/nsp31239I1239delATA---33AY.40.000005
ORF1ab/nsp31239I1239LAtaCta33AY.40.000005
ORF1ab/nsp31239I1239TaTaaCa33AY.440.000018
ORF1ab/nsp31239I1239TaTaaCa33AY.530.000863
ORF1ab/nsp31239I1239TaTaaCa33AY.570.001969
ORF1ab/nsp31239I1239TaTaaCa33AY.610.000314
ORF1ab/nsp31239I1239VAtaGta33B.10.000027
ORF1ab/nsp31239I1239del1Ata-ta13B.10.000009
ORF1ab/nsp31239I1239del1atAat-13B.10.000009
ORF1ab/nsp31239I1239del1aTAaC-13B.10.000009
ORF1ab/nsp31239I1239MatAatG33B.1.1.50.025
ORF1ab/nsp31239I1239TaTaaCa33P.10.000047
ORF1ab/nsp31239I1239MatAatG33P.10.000047
ORF1ab/nsp31239I1239delATA---22AY.1030.000012
ORF1ab/nsp31239I1239VAtaGta22AY.1170.000169
ORF1ab/nsp31239I1239TaTaaCa22AY.1200.000074
ORF1ab/nsp31239I1239TaTaaCa22AY.230.000139
ORF1ab/nsp31239I1239LAtaTta22AY.250.000012
ORF1ab/nsp31239I1239LAtACtG12AY.390.000025
ORF1ab/nsp31239I1239LAtACtC12AY.390.000025
ORF1ab/nsp31239I1239TaTaaCa22AY.4.20.000043
ORF1ab/nsp31239I1239delATA---22AY.430.000009
ORF1ab/nsp31239I1239VAtaGta22AY.460.000208
ORF1ab/nsp31239I1239TaTaaCa22AY.46.30.001867
ORF1ab/nsp31239I1239VAtaGta22AY.46.60.000144
ORF1ab/nsp31239I1239delATA---22AY.540.000191
ORF1ab/nsp31239I1239VAtaGta22AY.630.000774
ORF1ab/nsp31239I1239VAtaGta22AY.9.10.000167
ORF1ab/nsp31239I1239VAtaGta22AY.980.000158
ORF1ab/nsp31239I1239MatAatG22AY.990.002099
ORF1ab/nsp31239I1239MatAatG22B.10.000018
ORF1ab/nsp31239I1239VAtaGta22B.1.10.000036
ORF1ab/nsp31239I1239delATA---22B.1.10.000036
ORF1ab/nsp31239I1239MatAatG22B.1.10.000036
ORF1ab/nsp31239I1239TaTaaCa22B.1.1.2840.000215
ORF1ab/nsp31239I1239TaTaaCa22B.1.1.3180.000604
ORF1ab/nsp31239I1239RaTaaGa22B.1.1.70.000002
ORF1ab/nsp31239I1239del1atAat-22B.1.1.70.000002
ORF1ab/nsp31239I1239delATA---22B.1.20.000018
ORF1ab/nsp31239I1239KaTaaAa22B.1.2580.000133
ORF1ab/nsp31239I1239TaTaaCa22B.1.2580.000133
ORF1ab/nsp31239I1239TaTaaCa22B.1.258.110.000793
ORF1ab/nsp31239I1239TaTaaCa22B.1.3050.004301
ORF1ab/nsp31239I1239TaTaaCa22B.1.36.220.002415
ORF1ab/nsp31239I1239VAtaGta22B.1.36.310.003503
ORF1ab/nsp31239I1239VAtaGta22B.1.3690.00057
ORF1ab/nsp31239I1239MatAatG22B.1.4290.000047
ORF1ab/nsp31239I1239LAtaTta22B.1.617.20.000008
ORF1ab/nsp31239I1239RaTaaGa22B.1.617.20.000008
ORF1ab/nsp31239I1239TaTaaCa22C.36.30.001134
ORF1ab/nsp31239I1239LAtaTta11A.2.50.000499
ORF1ab/nsp31239I1239TaTaaCa11AD.20.000219
ORF1ab/nsp31239I1239IatAatC11All0
ORF1ab/nsp31239I1239VAtaGta11AY.1000.000046
ORF1ab/nsp31239I1239LAtaTta11AY.1020.000027
ORF1ab/nsp31239I1239MatAatG11AY.1030.000006
ORF1ab/nsp31239I1239TaTaaCa11AY.1160.000287
ORF1ab/nsp31239I1239TaTaaCa11AY.116.10.000311
ORF1ab/nsp31239I1239VAtaGta11AY.1190.000035
ORF1ab/nsp31239I1239VAtaGta11AY.1200.000037
ORF1ab/nsp31239I1239TaTaaCa11AY.140.000088
ORF1ab/nsp31239I1239MatAatG11AY.29.10.000221
ORF1ab/nsp31239I1239delATA---11AY.30.00001
ORF1ab/nsp31239I1239TaTaaCa11AY.30.00001
ORF1ab/nsp31239I1239TaTaaCa11AY.320.000532
ORF1ab/nsp31239I1239LAtaTta11AY.330.000067
ORF1ab/nsp31239I1239TaTaaCa11AY.34.10.00051
ORF1ab/nsp31239I1239TaTaaCa11AY.360.000148
ORF1ab/nsp31239I1239TaTaaCa11AY.390.000025
ORF1ab/nsp31239I1239del2aTAa--11AY.40.000002
ORF1ab/nsp31239I1239LAtaTta11AY.4.20.000022
ORF1ab/nsp31239I1239KaTaaAa11AY.4.20.000022
ORF1ab/nsp31239I1239delATA---11AY.4.50.000107
ORF1ab/nsp31239I1239del1atAat-11AY.430.000004
ORF1ab/nsp31239I1239MatAatG11AY.430.000004
ORF1ab/nsp31239I1239LAtaTta11AY.430.000004
ORF1ab/nsp31239I1239VAtaGta11AY.450.000122
ORF1ab/nsp31239I1239MatAatG11AY.470.000031
ORF1ab/nsp31239I1239TaTaaCa11AY.50.000021
ORF1ab/nsp31239I1239TaTaaCa11AY.60.000041
ORF1ab/nsp31239I1239TaTaaCa11AY.600.000938
ORF1ab/nsp31239I1239LAtaCta11AY.620.000436
ORF1ab/nsp31239I1239delATA---11AY.660.00107
ORF1ab/nsp31239I1239MatAatG11AY.90.000068
ORF1ab/nsp31239I1239LAtaCta11AY.9.20.000037
ORF1ab/nsp31239I1239TaTaaCa11AY.980.000079
ORF1ab/nsp31239I1239delATA---11AY.98.10.000048
ORF1ab/nsp31239I1239delATA---11AY.990.001049
ORF1ab/nsp31239I1239LAtaTta11B0.000128
ORF1ab/nsp31239I1239RaTaaGa11B.10.000009
ORF1ab/nsp31239I1239del2aTAa--11B.10.000009
ORF1ab/nsp31239I1239delATA---11B.10.000009
ORF1ab/nsp31239I1239LAtaTta11B.1.10.000018
ORF1ab/nsp31239I1239delATA---11B.1.1.1330.008475
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.280.000311
ORF1ab/nsp31239I1239delATA---11B.1.1.3480.000796
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.3510.002793
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.4070.041667
ORF1ab/nsp31239I1239TaTaaCa11B.1.1.4090.002833
ORF1ab/nsp31239I1239IatAatC11B.1.1.70.000001
ORF1ab/nsp31239I1239KaTaaAa11B.1.1.70.000001
ORF1ab/nsp31239I1239del2aTAa--11B.1.1770.000013
ORF1ab/nsp31239I1239TaTaaCa11B.1.1770.000013
ORF1ab/nsp31239I1239MatAatG11B.1.1770.000013
ORF1ab/nsp31239I1239TaTaaCa11B.1.177.210.000076
ORF1ab/nsp31239I1239delATA---11B.1.177.620.001192
ORF1ab/nsp31239I1239delATA---11B.1.177.830.001481
ORF1ab/nsp31239I1239del1aTaa-a11B.1.20.000009
ORF1ab/nsp31239I1239TaTaaCa11B.1.2210.000071
ORF1ab/nsp31239I1239TaTaaCa11B.1.2390.001221
ORF1ab/nsp31239I1239TaTaaCa11B.1.2430.00007
ORF1ab/nsp31239I1239delATA---11B.1.2580.000067
ORF1ab/nsp31239I1239MatAatG11B.1.3250.006897
ORF1ab/nsp31239I1239TaTaaCa11B.1.36.160.001425
ORF1ab/nsp31239I1239TaTaaCa11B.1.3960.000706
ORF1ab/nsp31239I1239VAtaGta11B.1.4270.00005
ORF1ab/nsp31239I1239TaTaaCa11B.1.4290.000024
ORF1ab/nsp31239I1239VAtaGta11B.1.4700.001404
ORF1ab/nsp31239I1239TaTaaCa11B.1.4920.007042
ORF1ab/nsp31239I1239TaTaaCa11B.1.5240.001406
ORF1ab/nsp31239I1239RaTaaGa11B.1.5260.000024
ORF1ab/nsp31239I1239VAtaGta11B.1.5260.000024
ORF1ab/nsp31239I1239VAtaGta11B.1.5480.035714
ORF1ab/nsp31239I1239TaTaaCa11B.1.5640.000426
ORF1ab/nsp31239I1239VAtaGta11B.1.5750.000303
ORF1ab/nsp31239I1239LAtaTta11B.1.5960.000087
ORF1ab/nsp31239I1239delATA---11B.1.617.20.000004
ORF1ab/nsp31239I1239VAtaGta11B.1.6370.000073
ORF1ab/nsp31239I1239delATA---11B.1.6370.000073
ORF1ab/nsp31239I1239del1atAat-11C.350.000774
ORF1ab/nsp31239I1239LAtaCta11C.370.000116
ORF1ab/nsp31239I1239TaTaaCa11D.20.000075
ORF1ab/nsp31239I1239LAtaCta11D.20.000075
ORF1ab/nsp31239I1239TaTaaCa11N.50.001767
ORF1ab/nsp31239I1239delATA---11P.10.000016
ORF1ab/nsp31239I1239LAtaTta11P.10.000016
ORF1ab/nsp31239I1239TaTaaCa11P.1.10.000318
ORF1ab/nsp31239I1239TaTaaCa11P.1.40.000977
ORF1ab/nsp31239I1239MatAatG11Q.80.000165
ORF1ab/nsp31239I1239LAtaTta11Q.80.000165