CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1238

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31238T1238TT2056TsynacCacT688668630.996666431-6433
ORF1ab/nsp31238T1238TT2056TsynacCacA6886230.003340116431-6433
ORF1ab/nsp31238T1238IT2056InonsynaCcaTc139413860.9942616431-6433
ORF1ab/nsp31238T1238IT2056InonsynaCCaTT139470.005021526431-6433
ORF1ab/nsp31238T1238IT2056InonsynaCCaTA139410.000717366431-6433
ORF1ab/nsp31238T1238delT2056deldelACC---58358316431-6433
ORF1ab/nsp31238T1238AT2056AnonsynAccGcc44430.9772736431-6433
ORF1ab/nsp31238T1238AT2056AnonsynAcCGcA4410.02272736431-6433
ORF1ab/nsp31238T1238NT2056NnonsynaCcaAc414116431-6433
ORF1ab/nsp31238T1238ST2056SnonsynAccTcc630.56431-6433
ORF1ab/nsp31238T1238ST2056SnonsynaCcaGc620.3333336431-6433
ORF1ab/nsp31238T1238ST2056SnonsynAcCTcT610.1666676431-6433
ORF1ab/nsp31238T1238PT2056PnonsynAccCcc3316431-6433
ORF1ab/nsp31238T1238del1T2056del1delAcc-cc1116431-6433

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31238T1238TacCacT68636886All0.001313
ORF1ab/nsp31238T1238TacCacA236886All0.000004
ORF1ab/nsp31238T1238TacCacT56675667B.1.1.2140.314275
ORF1ab/nsp31238T1238IaCcaTc13861394All0.000265
ORF1ab/nsp31238T1238IaCCaTT71394All0.000001
ORF1ab/nsp31238T1238IaCCaTA11394All0
ORF1ab/nsp31238T1238IaCcaTc789789B.1.1.70.000706
ORF1ab/nsp31238T1238delACC---583583All0.000112
ORF1ab/nsp31238T1238delACC---525525L.11
ORF1ab/nsp31238T1238TacCacT318318P.10.00501
ORF1ab/nsp31238T1238TacCacT146149B.1.1.70.000131
ORF1ab/nsp31238T1238TacCacA3149B.1.1.70.000003
ORF1ab/nsp31238T1238IaCcaTc110110B.1.617.20.000414
ORF1ab/nsp31238T1238TacCacT106106B.1.258.170.011021
ORF1ab/nsp31238T1238TacCacT9696B.1.10.001742
ORF1ab/nsp31238T1238TacCacT7575AY.30.000746
ORF1ab/nsp31238T1238IaCcaTc7373AY.4.20.001583
ORF1ab/nsp31238T1238AAccGcc4344All0.000008
ORF1ab/nsp31238T1238AAcCGcA144All0
ORF1ab/nsp31238T1238TacCacT4444AY.1030.000273
ORF1ab/nsp31238T1238NaCcaAc4141All0.000008
ORF1ab/nsp31238T1238TacCacT3636AY.260.001019
ORF1ab/nsp31238T1238IaCcaTc3535AY.40.000054
ORF1ab/nsp31238T1238TacCacT3535AY.440.000213
ORF1ab/nsp31238T1238IaCcaTc3333R.10.00297
ORF1ab/nsp31238T1238IaCcaTc2626AY.440.000158
ORF1ab/nsp31238T1238TacCacT2324B.1.20.000203
ORF1ab/nsp31238T1238TacCacA124B.1.20.000009
ORF1ab/nsp31238T1238TacCacT1820AY.430.00008
ORF1ab/nsp31238T1238TacCacA220AY.430.000009
ORF1ab/nsp31238T1238TacCacT1819AY.40.000028
ORF1ab/nsp31238T1238TacCacA119AY.40.000002
ORF1ab/nsp31238T1238TacCacT1819B.1.617.20.000068
ORF1ab/nsp31238T1238TacCacA119B.1.617.20.000004
ORF1ab/nsp31238T1238TacCacT1718AY.390.00042
ORF1ab/nsp31238T1238TacCacA118AY.390.000025
ORF1ab/nsp31238T1238TacCacT1418B.10.000128
ORF1ab/nsp31238T1238TacCacA418B.10.000037
ORF1ab/nsp31238T1238IaCcaTc1818B.1.1770.000237
ORF1ab/nsp31238T1238TacCacT1616AY.250.000096
ORF1ab/nsp31238T1238NaCcaAc1616AY.40.000025
ORF1ab/nsp31238T1238IaCcaTc1515AY.390.000371
ORF1ab/nsp31238T1238AAccGcc1515AY.98.10.000726
ORF1ab/nsp31238T1238IaCcaTc1515B.1.20.000132
ORF1ab/nsp31238T1238delACC---1414B.1.1.70.000013
ORF1ab/nsp31238T1238TacCacT1313B.1.4000.005577
ORF1ab/nsp31238T1238IaCcaTc1313B.1.4270.000656
ORF1ab/nsp31238T1238TacCacT1212A.2.50.005988
ORF1ab/nsp31238T1238IaCcaTc1212AY.540.001144
ORF1ab/nsp31238T1238TacCacT1111AY.120.10.003531
ORF1ab/nsp31238T1238IaCcaTc1111AY.30.000109
ORF1ab/nsp31238T1238IaCcaTc1111B.1.1.2140.00061
ORF1ab/nsp31238T1238IaCcaTc1111P.1.60.021401
ORF1ab/nsp31238T1238IaCcaTc1010AY.610.001048
ORF1ab/nsp31238T1238IaCcaTc1010AY.790.012107
ORF1ab/nsp31238T1238TacCacT99AY.420.000362
ORF1ab/nsp31238T1238NaCcaAc88AY.1190.000282
ORF1ab/nsp31238T1238TacCacT88AY.70.001568
ORF1ab/nsp31238T1238IaCcaTc47AY.250.000024
ORF1ab/nsp31238T1238IaCCaTT37AY.250.000018
ORF1ab/nsp31238T1238IaCcaTc77B.1.1470.005291
ORF1ab/nsp31238T1238IaCcaTc77B.1.36.390.015521
ORF1ab/nsp31238T1238IaCcaTc77Q.80.001154
ORF1ab/nsp31238T1238SAccTcc36All0.000001
ORF1ab/nsp31238T1238SaCcaGc26All0
ORF1ab/nsp31238T1238SAcCTcT16All0
ORF1ab/nsp31238T1238IaCcaTc66AY.1030.000037
ORF1ab/nsp31238T1238IaCcaTc66AY.1080.006615
ORF1ab/nsp31238T1238TacCacT66AY.230.000418
ORF1ab/nsp31238T1238TacCacT66AY.290.000095
ORF1ab/nsp31238T1238TacCacT66AY.360.000889
ORF1ab/nsp31238T1238IaCcaTc66AY.430.000027
ORF1ab/nsp31238T1238IaCcaTc66AY.60.000247
ORF1ab/nsp31238T1238delACC---66B.1.1.100.006689
ORF1ab/nsp31238T1238TacCacT66B.1.177.770.004357
ORF1ab/nsp31238T1238AAccGcc66B.1.3200.007472
ORF1ab/nsp31238T1238IaCcaTc66B.1.4970.001889
ORF1ab/nsp31238T1238IaCcaTc66P.20.00112
ORF1ab/nsp31238T1238IaCcaTc66Q.30.00087
ORF1ab/nsp31238T1238IaCcaTc55AY.450.000608
ORF1ab/nsp31238T1238AAccGcc55AY.740.000578
ORF1ab/nsp31238T1238IaCcaTc55B.10.000046
ORF1ab/nsp31238T1238TacCacT55B.1.1600.000156
ORF1ab/nsp31238T1238AAccGcc55B.1.3560.008636
ORF1ab/nsp31238T1238IaCcaTc55C.36.30.002836
ORF1ab/nsp31238T1238TacCacT34AY.1020.00008
ORF1ab/nsp31238T1238TacCacA14AY.1020.000027
ORF1ab/nsp31238T1238IaCcaTc44AY.1190.000141
ORF1ab/nsp31238T1238IaCcaTc34AY.200.000117
ORF1ab/nsp31238T1238IaCCaTT14AY.200.000039
ORF1ab/nsp31238T1238TacCacT44AY.34.10.00204
ORF1ab/nsp31238T1238IaCcaTc44AY.360.000593
ORF1ab/nsp31238T1238delACC---44AY.40.000006
ORF1ab/nsp31238T1238TacCacT44AY.4.20.000087
ORF1ab/nsp31238T1238IaCcaTc44AY.420.000161
ORF1ab/nsp31238T1238TacCacT44AY.750.000224
ORF1ab/nsp31238T1238IaCcaTc44AY.750.000224
ORF1ab/nsp31238T1238IaCcaTc44AY.850.001709
ORF1ab/nsp31238T1238TacCacT44AY.99.20.000369
ORF1ab/nsp31238T1238delACC---44B.1.1.5190.000159
ORF1ab/nsp31238T1238IaCcaTc44B.1.1.700.001364
ORF1ab/nsp31238T1238IaCcaTc44B.1.2580.000266
ORF1ab/nsp31238T1238TacCacT44P.1.10.001271
ORF1ab/nsp31238T1238PAccCcc33All0.000001
ORF1ab/nsp31238T1238TacCacT33AY.1000.000138
ORF1ab/nsp31238T1238IaCcaTc33AY.1020.00008
ORF1ab/nsp31238T1238TacCacT33AY.1190.000106
ORF1ab/nsp31238T1238TacCacT33AY.1200.000112
ORF1ab/nsp31238T1238TacCacT33AY.160.001139
ORF1ab/nsp31238T1238delACC---33AY.250.000018
ORF1ab/nsp31238T1238AAccGcc33AY.290.000047
ORF1ab/nsp31238T1238TacCacT33AY.50.000062
ORF1ab/nsp31238T1238TacCacT33AY.90.000203
ORF1ab/nsp31238T1238IaCcaTc33B.1.10.000054
ORF1ab/nsp31238T1238TacCacT33B.1.1.1010.03
ORF1ab/nsp31238T1238IaCcaTc23B.1.1.2220.000408
ORF1ab/nsp31238T1238IaCCaTT13B.1.1.2220.000204
ORF1ab/nsp31238T1238TacCacT33B.1.1.3180.000905
ORF1ab/nsp31238T1238TacCacT33B.1.1.700.001023
ORF1ab/nsp31238T1238TacCacT33B.1.1770.00004
ORF1ab/nsp31238T1238TacCacT33B.1.2210.000213
ORF1ab/nsp31238T1238AAccGcc33B.1.3510.000089
ORF1ab/nsp31238T1238TacCacT33B.1.3510.000089
ORF1ab/nsp31238T1238TacCacT33B.1.4080.01107
ORF1ab/nsp31238T1238IaCcaTc33B.1.4290.000071
ORF1ab/nsp31238T1238IaCcaTc33B.1.5250.000339
ORF1ab/nsp31238T1238IaCcaTc33D.20.000225
ORF1ab/nsp31238T1238TacCacT33D.20.000225
ORF1ab/nsp31238T1238IaCcaTc33P.10.000047
ORF1ab/nsp31238T1238TacCacT23P.1.140.000096
ORF1ab/nsp31238T1238TacCacA13P.1.140.000048
ORF1ab/nsp31238T1238delACC---22AY.1030.000012
ORF1ab/nsp31238T1238IaCcaTc22AY.1160.000574
ORF1ab/nsp31238T1238IaCcaTc22AY.1180.000125
ORF1ab/nsp31238T1238IaCcaTc22AY.260.000057
ORF1ab/nsp31238T1238NaCcaAc22AY.360.000296
ORF1ab/nsp31238T1238AAcCGcA12AY.390.000025
ORF1ab/nsp31238T1238AAccGcc12AY.390.000025
ORF1ab/nsp31238T1238AAccGcc22AY.40.000003
ORF1ab/nsp31238T1238SaCcaGc12AY.40.000002
ORF1ab/nsp31238T1238SAccTcc12AY.40.000002
ORF1ab/nsp31238T1238delACC---22AY.430.000009
ORF1ab/nsp31238T1238TacCacT22AY.470.000062
ORF1ab/nsp31238T1238delACC---22AY.540.000191
ORF1ab/nsp31238T1238TacCacT12AY.610.000105
ORF1ab/nsp31238T1238TacCacA12AY.610.000105
ORF1ab/nsp31238T1238IaCcaTc22AY.770.002255
ORF1ab/nsp31238T1238TacCacT22AY.9.20.000073
ORF1ab/nsp31238T1238IaCcaTc22AY.98.10.000097
ORF1ab/nsp31238T1238IaCCaTT12AY.99.20.000092
ORF1ab/nsp31238T1238IaCcaTc12AY.99.20.000092
ORF1ab/nsp31238T1238delACC---22B.1.10.000036
ORF1ab/nsp31238T1238TacCacT22B.1.1.1280.014184
ORF1ab/nsp31238T1238TacCacT22B.1.1.2940.002532
ORF1ab/nsp31238T1238TacCacT22B.1.1.3120.003824
ORF1ab/nsp31238T1238IaCcaTc22B.1.1.370.000386
ORF1ab/nsp31238T1238TacCacT22B.1.1.450.028169
ORF1ab/nsp31238T1238NaCcaAc22B.1.1.5190.000079
ORF1ab/nsp31238T1238IaCcaTc22B.1.1.5190.000079
ORF1ab/nsp31238T1238IaCcaTc22B.1.1.530.027397
ORF1ab/nsp31238T1238NaCcaAc22B.1.1.70.000002
ORF1ab/nsp31238T1238IaCcaTc22B.1.1110.00235
ORF1ab/nsp31238T1238IaCcaTc22B.1.1490.006849
ORF1ab/nsp31238T1238TacCacA22B.1.177.100.001756
ORF1ab/nsp31238T1238IaCcaTc12B.1.177.110.001698
ORF1ab/nsp31238T1238IaCCaTT12B.1.177.110.001698
ORF1ab/nsp31238T1238TacCacT22B.1.177.410.005
ORF1ab/nsp31238T1238TacCacT22B.1.177.560.001335
ORF1ab/nsp31238T1238TacCacT22B.1.177.620.002384
ORF1ab/nsp31238T1238delACC---22B.1.20.000018
ORF1ab/nsp31238T1238delACC---22B.1.2210.000142
ORF1ab/nsp31238T1238IaCcaTc22B.1.2340.000264
ORF1ab/nsp31238T1238TacCacT22B.1.2390.002442
ORF1ab/nsp31238T1238delACC---22B.1.2580.000133
ORF1ab/nsp31238T1238TacCacT22B.1.5750.000607
ORF1ab/nsp31238T1238TacCacT12B.1.5960.000087
ORF1ab/nsp31238T1238TacCacA12B.1.5960.000087
ORF1ab/nsp31238T1238NaCcaAc22B.1.617.20.000008
ORF1ab/nsp31238T1238TacCacT22C.370.000232
ORF1ab/nsp31238T1238IaCcaTc22C.370.000232
ORF1ab/nsp31238T1238TacCacA11A0.000387
ORF1ab/nsp31238T1238IaCcaTc11AD.20.000219
ORF1ab/nsp31238T1238del1Acc-cc11All0
ORF1ab/nsp31238T1238IaCcaTc11AY.1000.000046
ORF1ab/nsp31238T1238SaCcaGc11AY.1020.000027
ORF1ab/nsp31238T1238NaCcaAc11AY.1030.000006
ORF1ab/nsp31238T1238del1Acc-cc11AY.1030.000006
ORF1ab/nsp31238T1238TacCacT11AY.1110.000183
ORF1ab/nsp31238T1238IaCcaTc11AY.1130.000142
ORF1ab/nsp31238T1238TacCacT11AY.1170.000085
ORF1ab/nsp31238T1238IaCcaTc11AY.1200.000037
ORF1ab/nsp31238T1238TacCacT11AY.150.002222
ORF1ab/nsp31238T1238TacCacT11AY.200.000039
ORF1ab/nsp31238T1238NaCcaAc11AY.250.000006
ORF1ab/nsp31238T1238IaCcaTc11AY.280.00189
ORF1ab/nsp31238T1238NaCcaAc11AY.290.000016
ORF1ab/nsp31238T1238TacCacT11AY.29.10.000221
ORF1ab/nsp31238T1238delACC---11AY.30.00001
ORF1ab/nsp31238T1238AAccGcc11AY.30.00001
ORF1ab/nsp31238T1238NaCcaAc11AY.30.00001
ORF1ab/nsp31238T1238TacCacT11AY.330.000067
ORF1ab/nsp31238T1238TacCacT11AY.340.000097
ORF1ab/nsp31238T1238AAccGcc11AY.39.10.00004
ORF1ab/nsp31238T1238IaCcaTc11AY.39.20.001541
ORF1ab/nsp31238T1238NaCcaAc11AY.4.20.000022
ORF1ab/nsp31238T1238delACC---11AY.4.50.000107
ORF1ab/nsp31238T1238TacCacT11AY.410.000294
ORF1ab/nsp31238T1238delACC---11AY.440.000006
ORF1ab/nsp31238T1238TacCacT11AY.450.000122
ORF1ab/nsp31238T1238IaCcaTc11AY.460.000104
ORF1ab/nsp31238T1238IaCcaTc11AY.46.40.000165
ORF1ab/nsp31238T1238TacCacT11AY.46.60.000072
ORF1ab/nsp31238T1238IaCcaTc11AY.50.000021
ORF1ab/nsp31238T1238delACC---11AY.660.00107
ORF1ab/nsp31238T1238IaCcaTc11AY.680.000274
ORF1ab/nsp31238T1238IaCcaTc11AY.7.10.000113
ORF1ab/nsp31238T1238TacCacT11AY.740.000116
ORF1ab/nsp31238T1238AAccGcc11AY.750.000056
ORF1ab/nsp31238T1238TacCacT11AY.75.10.00018
ORF1ab/nsp31238T1238TacCacT11AY.820.001357
ORF1ab/nsp31238T1238TacCacT11AY.850.000427
ORF1ab/nsp31238T1238NaCcaAc11AY.850.000427
ORF1ab/nsp31238T1238TacCacT11AY.860.00083
ORF1ab/nsp31238T1238NaCcaAc11AY.90.000068
ORF1ab/nsp31238T1238IaCcaTc11AY.9.20.000037
ORF1ab/nsp31238T1238IaCcaTc11AY.980.000079
ORF1ab/nsp31238T1238delACC---11AY.98.10.000048
ORF1ab/nsp31238T1238delACC---11AY.990.001049
ORF1ab/nsp31238T1238IaCcaTc11AZ.30.00152
ORF1ab/nsp31238T1238TacCacA11B0.000128
ORF1ab/nsp31238T1238PAccCcc11B0.000128
ORF1ab/nsp31238T1238IaCcaTc11B0.000128
ORF1ab/nsp31238T1238PAccCcc11B.10.000009
ORF1ab/nsp31238T1238NaCcaAc11B.10.000009
ORF1ab/nsp31238T1238delACC---11B.10.000009
ORF1ab/nsp31238T1238SAccTcc11B.10.000009
ORF1ab/nsp31238T1238delACC---11B.1.1.1330.008475
ORF1ab/nsp31238T1238TacCacT11B.1.1.1760.000439
ORF1ab/nsp31238T1238TacCacT11B.1.1.2210.010101
ORF1ab/nsp31238T1238IaCcaTc11B.1.1.2630.001558
ORF1ab/nsp31238T1238TacCacA11B.1.1.2840.000107
ORF1ab/nsp31238T1238TacCacT11B.1.1.3160.000925
ORF1ab/nsp31238T1238TacCacT11B.1.1.330.000421
ORF1ab/nsp31238T1238delACC---11B.1.1.3480.000796
ORF1ab/nsp31238T1238TacCacT11B.1.1.390.00051
ORF1ab/nsp31238T1238TacCacT11B.1.1.4340.000349
ORF1ab/nsp31238T1238TacCacT11B.1.1.4640.001473
ORF1ab/nsp31238T1238TacCacT11B.1.1.5240.020833
ORF1ab/nsp31238T1238IaCcaTc11B.1.1.5280.004808
ORF1ab/nsp31238T1238TacCacT11B.1.177.110.001698
ORF1ab/nsp31238T1238TacCacT11B.1.177.420.000894
ORF1ab/nsp31238T1238IaCcaTc11B.1.177.440.000519
ORF1ab/nsp31238T1238IaCcaTc11B.1.177.460.000918
ORF1ab/nsp31238T1238SAccTcc11B.1.177.530.002392
ORF1ab/nsp31238T1238delACC---11B.1.177.620.001192
ORF1ab/nsp31238T1238delACC---11B.1.177.830.001481
ORF1ab/nsp31238T1238SAcCTcT11B.1.20.000009
ORF1ab/nsp31238T1238PAccCcc11B.1.20.000009
ORF1ab/nsp31238T1238IaCcaTc11B.1.2210.000071
ORF1ab/nsp31238T1238TacCacT11B.1.2320.000537
ORF1ab/nsp31238T1238IaCcaTc11B.1.2430.00007
ORF1ab/nsp31238T1238TacCacT11B.1.2580.000067
ORF1ab/nsp31238T1238IaCcaTc11B.1.258.140.00098
ORF1ab/nsp31238T1238IaCcaTc11B.1.2930.0125
ORF1ab/nsp31238T1238TacCacT11B.1.3110.000275
ORF1ab/nsp31238T1238IaCcaTc11B.1.3110.000275
ORF1ab/nsp31238T1238IaCcaTc11B.1.3130.006579
ORF1ab/nsp31238T1238IaCcaTc11B.1.3510.00003
ORF1ab/nsp31238T1238IaCcaTc11B.1.351.20.000303
ORF1ab/nsp31238T1238TacCacT11B.1.351.20.000303
ORF1ab/nsp31238T1238TacCacT11B.1.351.30.000876
ORF1ab/nsp31238T1238IaCcaTc11B.1.36.170.000494
ORF1ab/nsp31238T1238IaCcaTc11B.1.3820.008929
ORF1ab/nsp31238T1238IaCcaTc11B.1.3950.007042
ORF1ab/nsp31238T1238NaCcaAc11B.1.3950.007042
ORF1ab/nsp31238T1238IaCcaTc11B.1.4000.000429
ORF1ab/nsp31238T1238TacCacT11B.1.4160.001269
ORF1ab/nsp31238T1238TacCacT11B.1.4270.00005
ORF1ab/nsp31238T1238IaCcaTc11B.1.466.20.000391
ORF1ab/nsp31238T1238TacCacT11B.1.5090.000866
ORF1ab/nsp31238T1238IaCcaTc11B.1.5800.004065
ORF1ab/nsp31238T1238TacCacT11B.1.5930.01087
ORF1ab/nsp31238T1238delACC---11B.1.617.20.000004
ORF1ab/nsp31238T1238TacCacT11B.1.621.10.000506
ORF1ab/nsp31238T1238TacCacT11B.60.00091
ORF1ab/nsp31238T1238TacCacA11B.6.60.000889
ORF1ab/nsp31238T1238IaCcaTc11C.180.002591
ORF1ab/nsp31238T1238IaCCaTA11C.350.000774
ORF1ab/nsp31238T1238delACC---11P.10.000016
ORF1ab/nsp31238T1238TacCacT11P.1.10.10.00813
ORF1ab/nsp31238T1238TacCacT11P.1.120.000484
ORF1ab/nsp31238T1238TacCacT11P.1.150.000232
ORF1ab/nsp31238T1238TacCacT11P.1.70.000319
ORF1ab/nsp31238T1238IaCcaTc11P.30.001595
ORF1ab/nsp31238T1238TacCacT11Q.80.000165