CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1234

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31234V1234VV2052VsyngtGgtT996697660.9799326419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtA99661730.0173596419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtC9966270.002709216419-6421
ORF1ab/nsp31234V1234MV2052MnonsynGtgAtg94194116419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtgTtg4274170.9765816419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtgCtg42770.01639346419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGCtC42710.002341926419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGCtA42710.002341926419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGTtA42710.002341926419-6421
ORF1ab/nsp31234V1234delV2052deldelGTG---838316419-6421
ORF1ab/nsp31234V1234AV2052AnonsyngTggCg646416419-6421
ORF1ab/nsp31234V1234EV2052EnonsyngTggAg101016419-6421
ORF1ab/nsp31234V1234GV2052GnonsyngTggGg8816419-6421
ORF1ab/nsp31234V1234del2V2052del2delGTg--g2216419-6421
ORF1ab/nsp31234V1234del1V2052del1delgtGgt-2216419-6421

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31234V1234VgtGgtT97669966All0.001868
ORF1ab/nsp31234V1234VgtGgtA1739966All0.000033
ORF1ab/nsp31234V1234VgtGgtC279966All0.000005
ORF1ab/nsp31234V1234VgtGgtT51915204AY.1030.032231
ORF1ab/nsp31234V1234VgtGgtA135204AY.1030.000081
ORF1ab/nsp31234V1234VgtGgtT17791793B.1.617.20.006699
ORF1ab/nsp31234V1234VgtGgtA131793B.1.617.20.000049
ORF1ab/nsp31234V1234VgtGgtC11793B.1.617.20.000004
ORF1ab/nsp31234V1234MGtgAtg941941All0.00018
ORF1ab/nsp31234V1234MGtgAtg842842AY.1170.071163
ORF1ab/nsp31234V1234VgtGgtT563585AY.40.000876
ORF1ab/nsp31234V1234VgtGgtA21585AY.40.000033
ORF1ab/nsp31234V1234VgtGgtC1585AY.40.000002
ORF1ab/nsp31234V1234LGtgTtg417427All0.00008
ORF1ab/nsp31234V1234LGtgCtg7427All0.000001
ORF1ab/nsp31234V1234LGtGCtC1427All0
ORF1ab/nsp31234V1234LGtGCtA1427All0
ORF1ab/nsp31234V1234LGtGTtA1427All0
ORF1ab/nsp31234V1234VgtGgtT311311AY.39.10.01232
ORF1ab/nsp31234V1234VgtGgtT260285B.1.1.70.000233
ORF1ab/nsp31234V1234VgtGgtA23285B.1.1.70.000021
ORF1ab/nsp31234V1234VgtGgtC2285B.1.1.70.000002
ORF1ab/nsp31234V1234VgtGgtT173173B.1.5670.576667
ORF1ab/nsp31234V1234VgtGgtT130130N.50.229682
ORF1ab/nsp31234V1234VgtGgtT108109B.1.438.10.011584
ORF1ab/nsp31234V1234VgtGgtA1109B.1.438.10.000107
ORF1ab/nsp31234V1234VgtGgtT106106B.1.5811
ORF1ab/nsp31234V1234LGtgTtg104104B.1.1.2630.161994
ORF1ab/nsp31234V1234VgtGgtT98100AY.30.000975
ORF1ab/nsp31234V1234VgtGgtA2100AY.30.00002
ORF1ab/nsp31234V1234VgtGgtT9999B.1.4290.002329
ORF1ab/nsp31234V1234VgtGgtT9393AY.230.006487
ORF1ab/nsp31234V1234VgtGgtT8186B.10.000742
ORF1ab/nsp31234V1234VgtGgtC386B.10.000027
ORF1ab/nsp31234V1234VgtGgtA286B.10.000018
ORF1ab/nsp31234V1234delGTG---8383All0.000016
ORF1ab/nsp31234V1234VgtGgtT7374B.1.1770.000961
ORF1ab/nsp31234V1234VgtGgtA174B.1.1770.000013
ORF1ab/nsp31234V1234AgTggCg6464All0.000012
ORF1ab/nsp31234V1234VgtGgtT5559AY.440.000335
ORF1ab/nsp31234V1234VgtGgtC459AY.440.000024
ORF1ab/nsp31234V1234VgtGgtA4058B.1.20.000352
ORF1ab/nsp31234V1234VgtGgtT1858B.1.20.000158
ORF1ab/nsp31234V1234LGtgTtg4447B.1.1.70.000039
ORF1ab/nsp31234V1234LGtgCtg247B.1.1.70.000002
ORF1ab/nsp31234V1234LGtGCtC147B.1.1.70.000001
ORF1ab/nsp31234V1234LGtgTtg4343B.1.617.20.000162
ORF1ab/nsp31234V1234delGTG---4040B.1.1.70.000036
ORF1ab/nsp31234V1234VgtGgtT3535AY.430.000155
ORF1ab/nsp31234V1234VgtGgtT3333B.1.6370.002411
ORF1ab/nsp31234V1234LGtgTtg3131B.1.1770.000408
ORF1ab/nsp31234V1234VgtGgtT2929AY.60.001193
ORF1ab/nsp31234V1234VgtGgtT2626B.1.4270.001313
ORF1ab/nsp31234V1234VgtGgtT2325AY.250.000138
ORF1ab/nsp31234V1234VgtGgtA225AY.250.000012
ORF1ab/nsp31234V1234VgtGgtT2222B.1.1600.000686
ORF1ab/nsp31234V1234LGtgTtg2121AY.50.000434
ORF1ab/nsp31234V1234VgtGgtT1518AY.390.000371
ORF1ab/nsp31234V1234VgtGgtA318AY.390.000074
ORF1ab/nsp31234V1234VgtGgtT1718B.1.10.000308
ORF1ab/nsp31234V1234VgtGgtA118B.1.10.000018
ORF1ab/nsp31234V1234LGtgTtg1616P.10.000252
ORF1ab/nsp31234V1234VgtGgtT1616P.1.140.000765
ORF1ab/nsp31234V1234VgtGgtT815AY.1020.000212
ORF1ab/nsp31234V1234VgtGgtA715AY.1020.000186
ORF1ab/nsp31234V1234LGtgTtg1415AY.40.000022
ORF1ab/nsp31234V1234LGtGCtA115AY.40.000002
ORF1ab/nsp31234V1234VgtGgtT1515B.1.1.330.006313
ORF1ab/nsp31234V1234VgtGgtT1415B.1.6090.006711
ORF1ab/nsp31234V1234VgtGgtA115B.1.6090.000479
ORF1ab/nsp31234V1234VgtGgtT1515P.10.000236
ORF1ab/nsp31234V1234VgtGgtT1515P.20.0028
ORF1ab/nsp31234V1234VgtGgtT1414B.1.1.4480.028455
ORF1ab/nsp31234V1234VgtGgtA913AY.260.000255
ORF1ab/nsp31234V1234VgtGgtT413AY.260.000113
ORF1ab/nsp31234V1234VgtGgtC1313B.1.5070.146067
ORF1ab/nsp31234V1234VgtGgtT1212AY.290.000189
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.280.003735
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.5190.000477
ORF1ab/nsp31234V1234VgtGgtT1111AY.46.60.000794
ORF1ab/nsp31234V1234AgTggCg1111AY.930.003004
ORF1ab/nsp31234V1234AgTggCg1111B.1.1.70.00001
ORF1ab/nsp31234V1234LGtgTtg1111B.1.36.290.005691
ORF1ab/nsp31234V1234MGtgAtg1111B.1.617.20.000041
ORF1ab/nsp31234V1234EgTggAg1010All0.000002
ORF1ab/nsp31234V1234LGtgTtg1010AY.1000.00046
ORF1ab/nsp31234V1234VgtGgtT1010AY.420.000402
ORF1ab/nsp31234V1234LGtgTtg1010B.1.20.000088
ORF1ab/nsp31234V1234VgtGgtA610B.1.3510.000178
ORF1ab/nsp31234V1234VgtGgtT410B.1.3510.000119
ORF1ab/nsp31234V1234VgtGgtT1010P.1.100.002695
ORF1ab/nsp31234V1234VgtGgtT89AY.450.000973
ORF1ab/nsp31234V1234VgtGgtA19AY.450.000122
ORF1ab/nsp31234V1234VgtGgtT99AY.850.003845
ORF1ab/nsp31234V1234MGtgAtg99B.1.1040.03321
ORF1ab/nsp31234V1234GgTggGg88All0.000002
ORF1ab/nsp31234V1234MGtgAtg88AY.40.000012
ORF1ab/nsp31234V1234VgtGgtT78AY.4.20.000152
ORF1ab/nsp31234V1234VgtGgtA18AY.4.20.000022
ORF1ab/nsp31234V1234AgTggCg77AY.390.000173
ORF1ab/nsp31234V1234AgTggCg77AY.440.000043
ORF1ab/nsp31234V1234LGtgTtg77AY.440.000043
ORF1ab/nsp31234V1234VgtGgtT67AY.50.000124
ORF1ab/nsp31234V1234VgtGgtA17AY.50.000021
ORF1ab/nsp31234V1234VgtGgtA57B.1.1.3060.002192
ORF1ab/nsp31234V1234VgtGgtT27B.1.1.3060.000877
ORF1ab/nsp31234V1234MGtgAtg77B.1.1.70.000006
ORF1ab/nsp31234V1234LGtgTtg77B.1.3510.000208
ORF1ab/nsp31234V1234VgtGgtT77B.1.5260.000165
ORF1ab/nsp31234V1234VgtGgtT56AY.1170.000423
ORF1ab/nsp31234V1234VgtGgtA16AY.1170.000085
ORF1ab/nsp31234V1234VgtGgtT66AY.140.000528
ORF1ab/nsp31234V1234MGtgAtg66AY.290.000095
ORF1ab/nsp31234V1234VgtGgtT66AY.7.10.000676
ORF1ab/nsp31234V1234LGtgTtg66B.1.1040.02214
ORF1ab/nsp31234V1234LGtgTtg66B.1.3040.139535
ORF1ab/nsp31234V1234VgtGgtT66B.1.5950.001566
ORF1ab/nsp31234V1234MGtgAtg55AY.250.00003
ORF1ab/nsp31234V1234VgtGgtT45AY.460.000416
ORF1ab/nsp31234V1234VgtGgtA15AY.460.000104
ORF1ab/nsp31234V1234AgTggCg55AY.590.002648
ORF1ab/nsp31234V1234LGtgTtg55B.10.000046
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3080.058824
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3760.029762
ORF1ab/nsp31234V1234LGtgTtg55B.1.1.3970.011261
ORF1ab/nsp31234V1234LGtgTtg55B.1.36.80.005
ORF1ab/nsp31234V1234VgtGgtT55B.1.6210.000443
ORF1ab/nsp31234V1234VgtGgtT44AY.1000.000184
ORF1ab/nsp31234V1234MGtgAtg44AY.1110.000733
ORF1ab/nsp31234V1234VgtGgtT34AY.1190.000106
ORF1ab/nsp31234V1234VgtGgtA14AY.1190.000035
ORF1ab/nsp31234V1234MGtgAtg44AY.140.000352
ORF1ab/nsp31234V1234VgtGgtT44AY.160.001519
ORF1ab/nsp31234V1234LGtgCtg34AY.250.000018
ORF1ab/nsp31234V1234LGtgTtg14AY.250.000006
ORF1ab/nsp31234V1234MGtgAtg44AY.3.10.000341
ORF1ab/nsp31234V1234delGTG---44AY.40.000006
ORF1ab/nsp31234V1234AgTggCg44AY.40.000006
ORF1ab/nsp31234V1234LGtgTtg44AY.430.000018
ORF1ab/nsp31234V1234MGtgAtg44AY.440.000024
ORF1ab/nsp31234V1234VgtGgtA44AY.5.10.015038
ORF1ab/nsp31234V1234VgtGgtT44AY.860.00332
ORF1ab/nsp31234V1234MGtgAtg44B.10.000037
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.2220.000816
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.4320.005063
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.500.002716
ORF1ab/nsp31234V1234delGTG---44B.1.1.5190.000159
ORF1ab/nsp31234V1234EgTggAg44B.1.1.70.000004
ORF1ab/nsp31234V1234MGtgAtg44B.1.1390.002933
ORF1ab/nsp31234V1234MGtgAtg44B.1.1770.000053
ORF1ab/nsp31234V1234LGtgTtg44B.1.2580.000266
ORF1ab/nsp31234V1234VgtGgtT44B.1.2580.000266
ORF1ab/nsp31234V1234LGtgTtg44B.1.360.000584
ORF1ab/nsp31234V1234VgtGgtT44B.1.5960.000349
ORF1ab/nsp31234V1234LGtgTtg44P.20.000747
ORF1ab/nsp31234V1234LGtgTtg33AY.1030.000019
ORF1ab/nsp31234V1234VgtGgtT33AY.330.0002
ORF1ab/nsp31234V1234VgtGgtT33AY.46.40.000494
ORF1ab/nsp31234V1234VgtGgtT33AY.670.001393
ORF1ab/nsp31234V1234VgtGgtT33AY.750.000168
ORF1ab/nsp31234V1234VgtGgtT23AY.980.000158
ORF1ab/nsp31234V1234VgtGgtA13AY.980.000079
ORF1ab/nsp31234V1234VgtGgtT33AY.99.20.000276
ORF1ab/nsp31234V1234AgTggCg33B.10.000027
ORF1ab/nsp31234V1234LGtgTtg33B.1.10.000054
ORF1ab/nsp31234V1234delGTG---33B.1.10.000054
ORF1ab/nsp31234V1234VgtGgtA23B.1.1.1890.003026
ORF1ab/nsp31234V1234VgtGgtT13B.1.1.1890.001513
ORF1ab/nsp31234V1234LGtgTtg33B.1.1.630.001157
ORF1ab/nsp31234V1234GgTggGg33B.1.1.70.000003
ORF1ab/nsp31234V1234VgtGgtT33B.1.360.000438
ORF1ab/nsp31234V1234VgtGgtA33B.1.6280.001057
ORF1ab/nsp31234V1234VgtGgtT33B.350.023438
ORF1ab/nsp31234V1234VgtGgtT33P.1.150.000697
ORF1ab/nsp31234V1234VgtGgtT33P.1.70.000958
ORF1ab/nsp31234V1234del2GTg--g22All0
ORF1ab/nsp31234V1234del1gtGgt-22All0
ORF1ab/nsp31234V1234MGtgAtg22AY.1020.000053
ORF1ab/nsp31234V1234delGTG---22AY.1030.000012
ORF1ab/nsp31234V1234VgtGgtT22AY.1160.000574
ORF1ab/nsp31234V1234AgTggCg22AY.1200.000074
ORF1ab/nsp31234V1234VgtGgtT22AY.1200.000074
ORF1ab/nsp31234V1234VgtGgtT22AY.1210.000271
ORF1ab/nsp31234V1234VgtGgtT22AY.200.000078
ORF1ab/nsp31234V1234delGTG---22AY.250.000012
ORF1ab/nsp31234V1234LGtgTtg22AY.390.000049
ORF1ab/nsp31234V1234LGtgTtg22AY.39.10.000079
ORF1ab/nsp31234V1234VgtGgtT22AY.4.50.000215
ORF1ab/nsp31234V1234MGtgAtg22AY.430.000009
ORF1ab/nsp31234V1234delGTG---22AY.430.000009
ORF1ab/nsp31234V1234VgtGgtT22AY.46.20.001271
ORF1ab/nsp31234V1234VgtGgtT22AY.470.000062
ORF1ab/nsp31234V1234delGTG---22AY.540.000191
ORF1ab/nsp31234V1234VgtGgtT22AY.540.000191
ORF1ab/nsp31234V1234VgtGgtT22AY.610.00021
ORF1ab/nsp31234V1234LGtgTtg22AY.730.001331
ORF1ab/nsp31234V1234VgtGgtT22AY.9.20.000073
ORF1ab/nsp31234V1234VgtGgtT22AY.920.000575
ORF1ab/nsp31234V1234VgtGgtT22AY.950.001522
ORF1ab/nsp31234V1234LGtgTtg22AY.99.20.000184
ORF1ab/nsp31234V1234LGtgTtg22AZ.20.001642
ORF1ab/nsp31234V1234VgtGgtT22B0.000256
ORF1ab/nsp31234V1234delGTG---22B.10.000018
ORF1ab/nsp31234V1234MGtgAtg22B.1.10.000036
ORF1ab/nsp31234V1234VgtGgtA12B.1.1.250.000569
ORF1ab/nsp31234V1234VgtGgtT12B.1.1.250.000569
ORF1ab/nsp31234V1234LGtgTtg22B.1.1.280.000622
ORF1ab/nsp31234V1234AgTggCg22B.1.1770.000026
ORF1ab/nsp31234V1234VgtGgtT22B.1.177.70.00033
ORF1ab/nsp31234V1234MGtgAtg22B.1.20.000018
ORF1ab/nsp31234V1234delGTG---22B.1.20.000018
ORF1ab/nsp31234V1234EgTggAg22B.1.20.000018
ORF1ab/nsp31234V1234AgTggCg22B.1.20.000018
ORF1ab/nsp31234V1234VgtGgtT22B.1.2210.000142
ORF1ab/nsp31234V1234VgtGgtT22B.1.2430.000139
ORF1ab/nsp31234V1234VgtGgtC22B.1.351.50.001199
ORF1ab/nsp31234V1234MGtgAtg22B.1.4290.000047
ORF1ab/nsp31234V1234LGtgTtg22B.1.4290.000047
ORF1ab/nsp31234V1234VgtGgtT22B.1.466.20.000782
ORF1ab/nsp31234V1234VgtGgtT22B.1.4700.002809
ORF1ab/nsp31234V1234VgtGgtT22B.1.564.10.003155
ORF1ab/nsp31234V1234delGTG---22B.1.617.20.000008
ORF1ab/nsp31234V1234AgTggCg22B.1.617.20.000008
ORF1ab/nsp31234V1234VgtGgtT22B.1.6200.001892
ORF1ab/nsp31234V1234VgtGgtT22D.20.00015
ORF1ab/nsp31234V1234LGtgTtg12D.20.000075
ORF1ab/nsp31234V1234LGtgCtg12D.20.000075
ORF1ab/nsp31234V1234MGtgAtg22P.10.000032
ORF1ab/nsp31234V1234VgtGgtT22P.1.120.000968
ORF1ab/nsp31234V1234MGtgAtg11A.10.000282
ORF1ab/nsp31234V1234EgTggAg11A.2.40.003367
ORF1ab/nsp31234V1234LGtgTtg11AY.10.000396
ORF1ab/nsp31234V1234AgTggCg11AY.1000.000046
ORF1ab/nsp31234V1234delGTG---11AY.1010.00049
ORF1ab/nsp31234V1234VgtGgtT11AY.1010.00049
ORF1ab/nsp31234V1234LGtgTtg11AY.1020.000027
ORF1ab/nsp31234V1234VgtGgtC11AY.1090.00074
ORF1ab/nsp31234V1234LGtgTtg11AY.1100.000113
ORF1ab/nsp31234V1234LGtgTtg11AY.120.000316
ORF1ab/nsp31234V1234del2GTg--g11AY.120.10.000321
ORF1ab/nsp31234V1234AgTggCg11AY.1210.000135
ORF1ab/nsp31234V1234VgtGgtT11AY.130.000161
ORF1ab/nsp31234V1234VgtGgtT11AY.16.10.00047
ORF1ab/nsp31234V1234AgTggCg11AY.200.000039
ORF1ab/nsp31234V1234LGtgTtg11AY.200.000039
ORF1ab/nsp31234V1234delGTG---11AY.230.00007
ORF1ab/nsp31234V1234LGtgTtg11AY.230.00007
ORF1ab/nsp31234V1234AgTggCg11AY.250.000006
ORF1ab/nsp31234V1234GgTggGg11AY.250.000006
ORF1ab/nsp31234V1234MGtgAtg11AY.260.000028
ORF1ab/nsp31234V1234VgtGgtT11AY.270.000065
ORF1ab/nsp31234V1234LGtgTtg11AY.290.000016
ORF1ab/nsp31234V1234VgtGgtT11AY.29.10.000221
ORF1ab/nsp31234V1234delGTG---11AY.30.00001
ORF1ab/nsp31234V1234delGTG---11AY.330.000067
ORF1ab/nsp31234V1234VgtGgtT11AY.340.000097
ORF1ab/nsp31234V1234LGtgTtg11AY.340.000097
ORF1ab/nsp31234V1234LGtgTtg11AY.350.000233
ORF1ab/nsp31234V1234VgtGgtT11AY.350.000233
ORF1ab/nsp31234V1234VgtGgtT11AY.380.000499
ORF1ab/nsp31234V1234delGTG---11AY.390.000025
ORF1ab/nsp31234V1234LGtgTtg11AY.4.20.000022
ORF1ab/nsp31234V1234LGtgTtg11AY.4.40.000409
ORF1ab/nsp31234V1234delGTG---11AY.4.50.000107
ORF1ab/nsp31234V1234VgtGgtT11AY.400.000964
ORF1ab/nsp31234V1234GgTggGg11AY.430.000004
ORF1ab/nsp31234V1234GgTggGg11AY.440.000006
ORF1ab/nsp31234V1234delGTG---11AY.450.000122
ORF1ab/nsp31234V1234LGtgTtg11AY.450.000122
ORF1ab/nsp31234V1234MGtgAtg11AY.460.000104
ORF1ab/nsp31234V1234GgTggGg11AY.460.000104
ORF1ab/nsp31234V1234MGtgAtg11AY.46.20.000635
ORF1ab/nsp31234V1234MGtgAtg11AY.470.000031
ORF1ab/nsp31234V1234VgtGgtT11AY.480.000465
ORF1ab/nsp31234V1234VgtGgtT11AY.5.30.000337
ORF1ab/nsp31234V1234LGtgTtg11AY.5.30.000337
ORF1ab/nsp31234V1234VgtGgtA11AY.5.40.000277
ORF1ab/nsp31234V1234LGtgTtg11AY.510.000909
ORF1ab/nsp31234V1234VgtGgtT11AY.590.00053
ORF1ab/nsp31234V1234LGtgTtg11AY.60.000041
ORF1ab/nsp31234V1234VgtGgtT11AY.640.000595
ORF1ab/nsp31234V1234LGtgTtg11AY.640.000595
ORF1ab/nsp31234V1234VgtGgtT11AY.660.00107
ORF1ab/nsp31234V1234delGTG---11AY.660.00107
ORF1ab/nsp31234V1234LGtgTtg11AY.670.000464
ORF1ab/nsp31234V1234VgtGgtT11AY.680.000274
ORF1ab/nsp31234V1234VgtGgtT11AY.70.000196
ORF1ab/nsp31234V1234MGtgAtg11AY.70.000196
ORF1ab/nsp31234V1234VgtGgtT11AY.7.20.000559
ORF1ab/nsp31234V1234del1gtGgt-11AY.710.000475
ORF1ab/nsp31234V1234VgtGgtT11AY.740.000116
ORF1ab/nsp31234V1234delGTG---11AY.750.000056
ORF1ab/nsp31234V1234VgtGgtT11AY.890.004902
ORF1ab/nsp31234V1234LGtgTtg11AY.9.20.000037
ORF1ab/nsp31234V1234VgtGgtT11AY.940.000443
ORF1ab/nsp31234V1234LGtgTtg11AY.980.000079
ORF1ab/nsp31234V1234delGTG---11AY.990.001049
ORF1ab/nsp31234V1234MGtgAtg11AY.99.20.000092
ORF1ab/nsp31234V1234del2GTg--g11B0.000128
ORF1ab/nsp31234V1234LGtgTtg11B0.000128
ORF1ab/nsp31234V1234del1gtGgt-11B.10.000009
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.10.000327
ORF1ab/nsp31234V1234GgTggGg11B.1.1.10.000327
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.1330.008475
ORF1ab/nsp31234V1234delGTG---11B.1.1.1590.004673
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.2220.000204
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2840.000107
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.2940.001266
ORF1ab/nsp31234V1234delGTG---11B.1.1.3040.002809
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3180.000302
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.3230.014085
ORF1ab/nsp31234V1234delGTG---11B.1.1.3480.000796
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3560.008547
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.370.000193
ORF1ab/nsp31234V1234MGtgAtg11B.1.1.3720.000689
ORF1ab/nsp31234V1234EgTggAg11B.1.1.4340.000349
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.5190.00004
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.5260.003546
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.610.008772
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.700.000341
ORF1ab/nsp31234V1234VgtGgtA11B.1.160.270.015152
ORF1ab/nsp31234V1234AgTggCg11B.1.160.90.007194
ORF1ab/nsp31234V1234delGTG---11B.1.177.620.001192
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.730.000566
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.810.000189
ORF1ab/nsp31234V1234delGTG---11B.1.177.830.001481
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.860.000183
ORF1ab/nsp31234V1234LGtgTtg11B.1.1890.004292
ORF1ab/nsp31234V1234VgtGgtT11B.1.1950.005025
ORF1ab/nsp31234V1234VgtGgtT11B.1.2060.000816
ORF1ab/nsp31234V1234VgtGgtT11B.1.2180.005155
ORF1ab/nsp31234V1234VgtGgtT11B.1.221.20.004016
ORF1ab/nsp31234V1234EgTggAg11B.1.221.30.000833
ORF1ab/nsp31234V1234MGtgAtg11B.1.2340.000132
ORF1ab/nsp31234V1234VgtGgtT11B.1.2390.001221
ORF1ab/nsp31234V1234LGtgTtg11B.1.2410.000812
ORF1ab/nsp31234V1234VgtGgtT11B.1.2420.018868
ORF1ab/nsp31234V1234LGtgTtg11B.1.2430.00007
ORF1ab/nsp31234V1234MGtgAtg11B.1.2580.000067
ORF1ab/nsp31234V1234delGTG---11B.1.2580.000067
ORF1ab/nsp31234V1234LGtgTtg11B.1.2670.018519
ORF1ab/nsp31234V1234VgtGgtT11B.1.3050.002151
ORF1ab/nsp31234V1234LGtgCtg11B.1.3260.007576
ORF1ab/nsp31234V1234VgtGgtT11B.1.3490.000715
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.180.00042
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.360.000602
ORF1ab/nsp31234V1234VgtGgtT11B.1.3610.001289
ORF1ab/nsp31234V1234VgtGgtT11B.1.3630.012987
ORF1ab/nsp31234V1234VgtGgtT11B.1.3690.000285
ORF1ab/nsp31234V1234VgtGgtT11B.1.3960.000706
ORF1ab/nsp31234V1234VgtGgtT11B.1.416.10.001563
ORF1ab/nsp31234V1234VgtGgtT11B.1.4240.008065
ORF1ab/nsp31234V1234VgtGgtT11B.1.428.20.033333
ORF1ab/nsp31234V1234VgtGgtT11B.1.4380.006536
ORF1ab/nsp31234V1234VgtGgtT11B.1.4560.003268
ORF1ab/nsp31234V1234AgTggCg11B.1.5030.002488
ORF1ab/nsp31234V1234VgtGgtT11B.1.5250.000113
ORF1ab/nsp31234V1234VgtGgtT11B.1.5640.000426
ORF1ab/nsp31234V1234VgtGgtA11B.1.5680.001111
ORF1ab/nsp31234V1234VgtGgtA11B.1.5750.000303
ORF1ab/nsp31234V1234VgtGgtT11B.1.5770.000687
ORF1ab/nsp31234V1234VgtGgtT11B.1.617.10.000129
ORF1ab/nsp31234V1234MGtgAtg11B.1.617.10.000129
ORF1ab/nsp31234V1234EgTggAg11B.1.617.20.000004
ORF1ab/nsp31234V1234VgtGgtT11B.1.621.10.000506
ORF1ab/nsp31234V1234LGtgTtg11B.1.621.10.000506
ORF1ab/nsp31234V1234VgtGgtT11B.1.6270.00202
ORF1ab/nsp31234V1234delGTG---11B.1.6300.005236
ORF1ab/nsp31234V1234VgtGgtT11B.1.760.011364
ORF1ab/nsp31234V1234LGtgTtg11B.1.9.50.005682
ORF1ab/nsp31234V1234VgtGgtT11B.1.930.000934
ORF1ab/nsp31234V1234LGtgTtg11B.400.000364
ORF1ab/nsp31234V1234MGtgAtg11B.60.00091
ORF1ab/nsp31234V1234VgtGgtT11B.60.00091
ORF1ab/nsp31234V1234LGtgTtg11B.60.00091
ORF1ab/nsp31234V1234LGtGTtA11C.350.000774
ORF1ab/nsp31234V1234VgtGgtT11C.370.000116
ORF1ab/nsp31234V1234AgTggCg11P.10.000016
ORF1ab/nsp31234V1234delGTG---11P.10.000016
ORF1ab/nsp31234V1234VgtGgtT11P.1.170.000162
ORF1ab/nsp31234V1234VgtGgtT11P.40.003802
ORF1ab/nsp31234V1234VgtGgtT11Q.10.000126
ORF1ab/nsp31234V1234AgTggCg11Q.80.000165
ORF1ab/nsp31234V1234MGtgAtg11Q.80.000165