CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1234 | V1234V | V2052V | syn | gtG | gtT | 9966 | 9766 | 0.979932 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234V | V2052V | syn | gtG | gtA | 9966 | 173 | 0.017359 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234V | V2052V | syn | gtG | gtC | 9966 | 27 | 0.00270921 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234M | V2052M | nonsyn | Gtg | Atg | 941 | 941 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234L | V2052L | nonsyn | Gtg | Ttg | 427 | 417 | 0.976581 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234L | V2052L | nonsyn | Gtg | Ctg | 427 | 7 | 0.0163934 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234L | V2052L | nonsyn | GtG | CtC | 427 | 1 | 0.00234192 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234L | V2052L | nonsyn | GtG | CtA | 427 | 1 | 0.00234192 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234L | V2052L | nonsyn | GtG | TtA | 427 | 1 | 0.00234192 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234del | V2052del | del | GTG | --- | 83 | 83 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234A | V2052A | nonsyn | gTg | gCg | 64 | 64 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234E | V2052E | nonsyn | gTg | gAg | 10 | 10 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234G | V2052G | nonsyn | gTg | gGg | 8 | 8 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234del2 | V2052del2 | del | GTg | --g | 2 | 2 | 1 | 6419-6421 |
ORF1ab/nsp3 | 1234 | V1234del1 | V2052del1 | del | gtG | gt- | 2 | 2 | 1 | 6419-6421 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 9766 | 9966 | All | 0.001868 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 173 | 9966 | All | 0.000033 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 27 | 9966 | All | 0.000005 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 5191 | 5204 | AY.103 | 0.032231 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 13 | 5204 | AY.103 | 0.000081 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1779 | 1793 | B.1.617.2 | 0.006699 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 13 | 1793 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 1 | 1793 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 941 | 941 | All | 0.00018 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 842 | 842 | AY.117 | 0.071163 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 563 | 585 | AY.4 | 0.000876 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 21 | 585 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 1 | 585 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 417 | 427 | All | 0.00008 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ctg | 7 | 427 | All | 0.000001 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | CtC | 1 | 427 | All | 0 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | CtA | 1 | 427 | All | 0 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | TtA | 1 | 427 | All | 0 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 311 | 311 | AY.39.1 | 0.01232 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 260 | 285 | B.1.1.7 | 0.000233 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 23 | 285 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 2 | 285 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 173 | 173 | B.1.567 | 0.576667 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 130 | 130 | N.5 | 0.229682 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 108 | 109 | B.1.438.1 | 0.011584 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 109 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 106 | 106 | B.1.581 | 1 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 104 | 104 | B.1.1.263 | 0.161994 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 98 | 100 | AY.3 | 0.000975 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 2 | 100 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 99 | 99 | B.1.429 | 0.002329 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 93 | 93 | AY.23 | 0.006487 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 81 | 86 | B.1 | 0.000742 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 3 | 86 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 2 | 86 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 83 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 73 | 74 | B.1.177 | 0.000961 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 74 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 64 | 64 | All | 0.000012 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 55 | 59 | AY.44 | 0.000335 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 4 | 59 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 40 | 58 | B.1.2 | 0.000352 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 18 | 58 | B.1.2 | 0.000158 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 44 | 47 | B.1.1.7 | 0.000039 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ctg | 2 | 47 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | CtC | 1 | 47 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 43 | 43 | B.1.617.2 | 0.000162 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 33 | 33 | B.1.637 | 0.002411 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 31 | 31 | B.1.177 | 0.000408 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 29 | 29 | AY.6 | 0.001193 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 26 | 26 | B.1.427 | 0.001313 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 23 | 25 | AY.25 | 0.000138 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 2 | 25 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 15 | 18 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 3 | 18 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 17 | 18 | B.1.1 | 0.000308 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 16 | 16 | P.1 | 0.000252 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 16 | 16 | P.1.14 | 0.000765 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 8 | 15 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 7 | 15 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 14 | 15 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | CtA | 1 | 15 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 15 | 15 | B.1.1.33 | 0.006313 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 14 | 15 | B.1.609 | 0.006711 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 15 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 15 | 15 | P.2 | 0.0028 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 14 | 14 | B.1.1.448 | 0.028455 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 9 | 13 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 13 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 13 | 13 | B.1.507 | 0.146067 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 12 | 12 | B.1.1.28 | 0.003735 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 11 | 11 | AY.93 | 0.003004 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 6 | 10 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 10 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 8 | 9 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 9 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 9 | 9 | AY.85 | 0.003845 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 9 | 9 | B.1.104 | 0.03321 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 7 | 8 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 8 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 6 | 7 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 7 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 5 | 7 | B.1.1.306 | 0.002192 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 7 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 5 | 6 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 6 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 6 | 6 | B.1.104 | 0.02214 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 6 | 6 | B.1.304 | 0.139535 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 5 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 5 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 5 | 5 | B.1.1.308 | 0.058824 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 5 | 5 | B.1.1.376 | 0.029762 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 5 | 5 | B.1.1.397 | 0.011261 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 4 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 4 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ctg | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 4 | 4 | AY.5.1 | 0.015038 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 3 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 3 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 2 | 3 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 3 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | B.35 | 0.023438 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1234 | V1234del2 | GTg | --g | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1234 | V1234del1 | gtG | gt- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 2 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 2 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ctg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtC | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1234 | V1234del2 | GTg | --g | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1234 | V1234del1 | gtG | gt- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1234 | V1234del2 | GTg | --g | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1234 | V1234del1 | gtG | gt- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1234 | V1234G | gTg | gGg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | B.1.160.27 | 0.015152 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ctg | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtA | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1234 | V1234E | gTg | gAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1234 | V1234L | Gtg | Ttg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1234 | V1234L | GtG | TtA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1234 | V1234del | GTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp3 | 1234 | V1234V | gtG | gtT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1234 | V1234A | gTg | gCg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1234 | V1234M | Gtg | Atg | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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