CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1234

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31234V1234VV2052VsyngtGgtT996697660.9799326419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtA99661730.0173596419-6421
ORF1ab/nsp31234V1234VV2052VsyngtGgtC9966270.002709216419-6421
ORF1ab/nsp31234V1234MV2052MnonsynGtgAtg94194116419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtgTtg4274170.9765816419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtgCtg42770.01639346419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGCtC42710.002341926419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGCtA42710.002341926419-6421
ORF1ab/nsp31234V1234LV2052LnonsynGtGTtA42710.002341926419-6421
ORF1ab/nsp31234V1234delV2052deldelGTG---838316419-6421
ORF1ab/nsp31234V1234AV2052AnonsyngTggCg646416419-6421
ORF1ab/nsp31234V1234EV2052EnonsyngTggAg101016419-6421
ORF1ab/nsp31234V1234GV2052GnonsyngTggGg8816419-6421
ORF1ab/nsp31234V1234del2V2052del2delGTg--g2216419-6421
ORF1ab/nsp31234V1234del1V2052del1delgtGgt-2216419-6421

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31234V1234VgtGgtT97669966All0.001868
ORF1ab/nsp31234V1234VgtGgtA1739966All0.000033
ORF1ab/nsp31234V1234VgtGgtC279966All0.000005
ORF1ab/nsp31234V1234VgtGgtT51915204AY.1030.032231
ORF1ab/nsp31234V1234VgtGgtA135204AY.1030.000081
ORF1ab/nsp31234V1234VgtGgtT17791793B.1.617.20.006699
ORF1ab/nsp31234V1234VgtGgtA131793B.1.617.20.000049
ORF1ab/nsp31234V1234VgtGgtC11793B.1.617.20.000004
ORF1ab/nsp31234V1234MGtgAtg941941All0.00018
ORF1ab/nsp31234V1234MGtgAtg842842AY.1170.071163
ORF1ab/nsp31234V1234VgtGgtT563585AY.40.000876
ORF1ab/nsp31234V1234VgtGgtA21585AY.40.000033
ORF1ab/nsp31234V1234VgtGgtC1585AY.40.000002
ORF1ab/nsp31234V1234LGtgTtg417427All0.00008
ORF1ab/nsp31234V1234LGtgCtg7427All0.000001
ORF1ab/nsp31234V1234LGtGCtC1427All0
ORF1ab/nsp31234V1234LGtGCtA1427All0
ORF1ab/nsp31234V1234LGtGTtA1427All0
ORF1ab/nsp31234V1234VgtGgtT311311AY.39.10.01232
ORF1ab/nsp31234V1234VgtGgtT260285B.1.1.70.000233
ORF1ab/nsp31234V1234VgtGgtA23285B.1.1.70.000021
ORF1ab/nsp31234V1234VgtGgtC2285B.1.1.70.000002
ORF1ab/nsp31234V1234VgtGgtT173173B.1.5670.576667
ORF1ab/nsp31234V1234VgtGgtT130130N.50.229682
ORF1ab/nsp31234V1234VgtGgtT108109B.1.438.10.011584
ORF1ab/nsp31234V1234VgtGgtA1109B.1.438.10.000107
ORF1ab/nsp31234V1234VgtGgtT106106B.1.5811
ORF1ab/nsp31234V1234LGtgTtg104104B.1.1.2630.161994
ORF1ab/nsp31234V1234VgtGgtT98100AY.30.000975
ORF1ab/nsp31234V1234VgtGgtA2100AY.30.00002
ORF1ab/nsp31234V1234VgtGgtT9999B.1.4290.002329
ORF1ab/nsp31234V1234VgtGgtT9393AY.230.006487
ORF1ab/nsp31234V1234VgtGgtT8186B.10.000742
ORF1ab/nsp31234V1234VgtGgtC386B.10.000027
ORF1ab/nsp31234V1234VgtGgtA286B.10.000018
ORF1ab/nsp31234V1234delGTG---8383All0.000016
ORF1ab/nsp31234V1234VgtGgtT7374B.1.1770.000961
ORF1ab/nsp31234V1234VgtGgtA174B.1.1770.000013
ORF1ab/nsp31234V1234AgTggCg6464All0.000012
ORF1ab/nsp31234V1234VgtGgtT5559AY.440.000335
ORF1ab/nsp31234V1234VgtGgtC459AY.440.000024
ORF1ab/nsp31234V1234VgtGgtA4058B.1.20.000352
ORF1ab/nsp31234V1234VgtGgtT1858B.1.20.000158
ORF1ab/nsp31234V1234LGtgTtg4447B.1.1.70.000039
ORF1ab/nsp31234V1234LGtgCtg247B.1.1.70.000002
ORF1ab/nsp31234V1234LGtGCtC147B.1.1.70.000001
ORF1ab/nsp31234V1234LGtgTtg4343B.1.617.20.000162
ORF1ab/nsp31234V1234delGTG---4040B.1.1.70.000036
ORF1ab/nsp31234V1234VgtGgtT3535AY.430.000155
ORF1ab/nsp31234V1234VgtGgtT3333B.1.6370.002411
ORF1ab/nsp31234V1234LGtgTtg3131B.1.1770.000408
ORF1ab/nsp31234V1234VgtGgtT2929AY.60.001193
ORF1ab/nsp31234V1234VgtGgtT2626B.1.4270.001313
ORF1ab/nsp31234V1234VgtGgtT2325AY.250.000138
ORF1ab/nsp31234V1234VgtGgtA225AY.250.000012
ORF1ab/nsp31234V1234VgtGgtT2222B.1.1600.000686
ORF1ab/nsp31234V1234LGtgTtg2121AY.50.000434
ORF1ab/nsp31234V1234VgtGgtT1518AY.390.000371
ORF1ab/nsp31234V1234VgtGgtA318AY.390.000074
ORF1ab/nsp31234V1234VgtGgtT1718B.1.10.000308
ORF1ab/nsp31234V1234VgtGgtA118B.1.10.000018
ORF1ab/nsp31234V1234LGtgTtg1616P.10.000252
ORF1ab/nsp31234V1234VgtGgtT1616P.1.140.000765
ORF1ab/nsp31234V1234VgtGgtT815AY.1020.000212
ORF1ab/nsp31234V1234VgtGgtA715AY.1020.000186
ORF1ab/nsp31234V1234LGtgTtg1415AY.40.000022
ORF1ab/nsp31234V1234LGtGCtA115AY.40.000002
ORF1ab/nsp31234V1234VgtGgtT1515B.1.1.330.006313
ORF1ab/nsp31234V1234VgtGgtT1415B.1.6090.006711
ORF1ab/nsp31234V1234VgtGgtA115B.1.6090.000479
ORF1ab/nsp31234V1234VgtGgtT1515P.10.000236
ORF1ab/nsp31234V1234VgtGgtT1515P.20.0028
ORF1ab/nsp31234V1234VgtGgtT1414B.1.1.4480.028455
ORF1ab/nsp31234V1234VgtGgtA913AY.260.000255
ORF1ab/nsp31234V1234VgtGgtT413AY.260.000113
ORF1ab/nsp31234V1234VgtGgtC1313B.1.5070.146067
ORF1ab/nsp31234V1234VgtGgtT1212AY.290.000189
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.280.003735
ORF1ab/nsp31234V1234VgtGgtT1212B.1.1.5190.000477
ORF1ab/nsp31234V1234VgtGgtT1111AY.46.60.000794
ORF1ab/nsp31234V1234AgTggCg1111AY.930.003004
ORF1ab/nsp31234V1234AgTggCg1111B.1.1.70.00001
ORF1ab/nsp31234V1234LGtgTtg1111B.1.36.290.005691
ORF1ab/nsp31234V1234MGtgAtg1111B.1.617.20.000041
ORF1ab/nsp31234V1234EgTggAg1010All0.000002
ORF1ab/nsp31234V1234LGtgTtg1010AY.1000.00046
ORF1ab/nsp31234V1234VgtGgtT1010AY.420.000402
ORF1ab/nsp31234V1234LGtgTtg1010B.1.20.000088
ORF1ab/nsp31234V1234VgtGgtA610B.1.3510.000178
ORF1ab/nsp31234V1234VgtGgtT410B.1.3510.000119
ORF1ab/nsp31234V1234VgtGgtT1010P.1.100.002695
ORF1ab/nsp31234V1234VgtGgtT89AY.450.000973
ORF1ab/nsp31234V1234VgtGgtA19AY.450.000122
ORF1ab/nsp31234V1234VgtGgtT99AY.850.003845
ORF1ab/nsp31234V1234MGtgAtg99B.1.1040.03321
ORF1ab/nsp31234V1234GgTggGg88All0.000002
ORF1ab/nsp31234V1234MGtgAtg88AY.40.000012
ORF1ab/nsp31234V1234VgtGgtT78AY.4.20.000152
ORF1ab/nsp31234V1234VgtGgtA18AY.4.20.000022
ORF1ab/nsp31234V1234AgTggCg77AY.390.000173
ORF1ab/nsp31234V1234AgTggCg77AY.440.000043
ORF1ab/nsp31234V1234LGtgTtg77AY.440.000043
ORF1ab/nsp31234V1234VgtGgtT67AY.50.000124
ORF1ab/nsp31234V1234VgtGgtA17AY.50.000021
ORF1ab/nsp31234V1234VgtGgtA57B.1.1.3060.002192
ORF1ab/nsp31234V1234VgtGgtT27B.1.1.3060.000877
ORF1ab/nsp31234V1234MGtgAtg77B.1.1.70.000006
ORF1ab/nsp31234V1234LGtgTtg77B.1.3510.000208
ORF1ab/nsp31234V1234VgtGgtT77B.1.5260.000165
ORF1ab/nsp31234V1234VgtGgtT56AY.1170.000423
ORF1ab/nsp31234V1234VgtGgtA16AY.1170.000085
ORF1ab/nsp31234V1234VgtGgtT66AY.140.000528
ORF1ab/nsp31234V1234MGtgAtg66AY.290.000095
ORF1ab/nsp31234V1234VgtGgtT66AY.7.10.000676
ORF1ab/nsp31234V1234LGtgTtg66B.1.1040.02214
ORF1ab/nsp31234V1234LGtgTtg66B.1.3040.139535
ORF1ab/nsp31234V1234VgtGgtT66B.1.5950.001566
ORF1ab/nsp31234V1234MGtgAtg55AY.250.00003
ORF1ab/nsp31234V1234VgtGgtT45AY.460.000416
ORF1ab/nsp31234V1234VgtGgtA15AY.460.000104
ORF1ab/nsp31234V1234AgTggCg55AY.590.002648
ORF1ab/nsp31234V1234LGtgTtg55B.10.000046
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3080.058824
ORF1ab/nsp31234V1234VgtGgtT55B.1.1.3760.029762
ORF1ab/nsp31234V1234LGtgTtg55B.1.1.3970.011261
ORF1ab/nsp31234V1234LGtgTtg55B.1.36.80.005
ORF1ab/nsp31234V1234VgtGgtT55B.1.6210.000443
ORF1ab/nsp31234V1234VgtGgtT44AY.1000.000184
ORF1ab/nsp31234V1234MGtgAtg44AY.1110.000733
ORF1ab/nsp31234V1234VgtGgtT34AY.1190.000106
ORF1ab/nsp31234V1234VgtGgtA14AY.1190.000035
ORF1ab/nsp31234V1234MGtgAtg44AY.140.000352
ORF1ab/nsp31234V1234VgtGgtT44AY.160.001519
ORF1ab/nsp31234V1234LGtgCtg34AY.250.000018
ORF1ab/nsp31234V1234LGtgTtg14AY.250.000006
ORF1ab/nsp31234V1234MGtgAtg44AY.3.10.000341
ORF1ab/nsp31234V1234delGTG---44AY.40.000006
ORF1ab/nsp31234V1234AgTggCg44AY.40.000006
ORF1ab/nsp31234V1234LGtgTtg44AY.430.000018
ORF1ab/nsp31234V1234MGtgAtg44AY.440.000024
ORF1ab/nsp31234V1234VgtGgtA44AY.5.10.015038
ORF1ab/nsp31234V1234VgtGgtT44AY.860.00332
ORF1ab/nsp31234V1234MGtgAtg44B.10.000037
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.2220.000816
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.4320.005063
ORF1ab/nsp31234V1234VgtGgtT44B.1.1.500.002716
ORF1ab/nsp31234V1234delGTG---44B.1.1.5190.000159
ORF1ab/nsp31234V1234EgTggAg44B.1.1.70.000004
ORF1ab/nsp31234V1234MGtgAtg44B.1.1390.002933
ORF1ab/nsp31234V1234MGtgAtg44B.1.1770.000053
ORF1ab/nsp31234V1234LGtgTtg44B.1.2580.000266
ORF1ab/nsp31234V1234VgtGgtT44B.1.2580.000266
ORF1ab/nsp31234V1234LGtgTtg44B.1.360.000584
ORF1ab/nsp31234V1234VgtGgtT44B.1.5960.000349
ORF1ab/nsp31234V1234LGtgTtg44P.20.000747
ORF1ab/nsp31234V1234LGtgTtg33AY.1030.000019
ORF1ab/nsp31234V1234VgtGgtT33AY.330.0002
ORF1ab/nsp31234V1234VgtGgtT33AY.46.40.000494
ORF1ab/nsp31234V1234VgtGgtT33AY.670.001393
ORF1ab/nsp31234V1234VgtGgtT33AY.750.000168
ORF1ab/nsp31234V1234VgtGgtT23AY.980.000158
ORF1ab/nsp31234V1234VgtGgtA13AY.980.000079
ORF1ab/nsp31234V1234VgtGgtT33AY.99.20.000276
ORF1ab/nsp31234V1234AgTggCg33B.10.000027
ORF1ab/nsp31234V1234LGtgTtg33B.1.10.000054
ORF1ab/nsp31234V1234delGTG---33B.1.10.000054
ORF1ab/nsp31234V1234VgtGgtA23B.1.1.1890.003026
ORF1ab/nsp31234V1234VgtGgtT13B.1.1.1890.001513
ORF1ab/nsp31234V1234LGtgTtg33B.1.1.630.001157
ORF1ab/nsp31234V1234GgTggGg33B.1.1.70.000003
ORF1ab/nsp31234V1234VgtGgtT33B.1.360.000438
ORF1ab/nsp31234V1234VgtGgtA33B.1.6280.001057
ORF1ab/nsp31234V1234VgtGgtT33B.350.023438
ORF1ab/nsp31234V1234VgtGgtT33P.1.150.000697
ORF1ab/nsp31234V1234VgtGgtT33P.1.70.000958
ORF1ab/nsp31234V1234del2GTg--g22All0
ORF1ab/nsp31234V1234del1gtGgt-22All0
ORF1ab/nsp31234V1234MGtgAtg22AY.1020.000053
ORF1ab/nsp31234V1234delGTG---22AY.1030.000012
ORF1ab/nsp31234V1234VgtGgtT22AY.1160.000574
ORF1ab/nsp31234V1234AgTggCg22AY.1200.000074
ORF1ab/nsp31234V1234VgtGgtT22AY.1200.000074
ORF1ab/nsp31234V1234VgtGgtT22AY.1210.000271
ORF1ab/nsp31234V1234VgtGgtT22AY.200.000078
ORF1ab/nsp31234V1234delGTG---22AY.250.000012
ORF1ab/nsp31234V1234LGtgTtg22AY.390.000049
ORF1ab/nsp31234V1234LGtgTtg22AY.39.10.000079
ORF1ab/nsp31234V1234VgtGgtT22AY.4.50.000215
ORF1ab/nsp31234V1234MGtgAtg22AY.430.000009
ORF1ab/nsp31234V1234delGTG---22AY.430.000009
ORF1ab/nsp31234V1234VgtGgtT22AY.46.20.001271
ORF1ab/nsp31234V1234VgtGgtT22AY.470.000062
ORF1ab/nsp31234V1234delGTG---22AY.540.000191
ORF1ab/nsp31234V1234VgtGgtT22AY.540.000191
ORF1ab/nsp31234V1234VgtGgtT22AY.610.00021
ORF1ab/nsp31234V1234LGtgTtg22AY.730.001331
ORF1ab/nsp31234V1234VgtGgtT22AY.9.20.000073
ORF1ab/nsp31234V1234VgtGgtT22AY.920.000575
ORF1ab/nsp31234V1234VgtGgtT22AY.950.001522
ORF1ab/nsp31234V1234LGtgTtg22AY.99.20.000184
ORF1ab/nsp31234V1234LGtgTtg22AZ.20.001642
ORF1ab/nsp31234V1234VgtGgtT22B0.000256
ORF1ab/nsp31234V1234delGTG---22B.10.000018
ORF1ab/nsp31234V1234MGtgAtg22B.1.10.000036
ORF1ab/nsp31234V1234VgtGgtA12B.1.1.250.000569
ORF1ab/nsp31234V1234VgtGgtT12B.1.1.250.000569
ORF1ab/nsp31234V1234LGtgTtg22B.1.1.280.000622
ORF1ab/nsp31234V1234AgTggCg22B.1.1770.000026
ORF1ab/nsp31234V1234VgtGgtT22B.1.177.70.00033
ORF1ab/nsp31234V1234MGtgAtg22B.1.20.000018
ORF1ab/nsp31234V1234delGTG---22B.1.20.000018
ORF1ab/nsp31234V1234EgTggAg22B.1.20.000018
ORF1ab/nsp31234V1234AgTggCg22B.1.20.000018
ORF1ab/nsp31234V1234VgtGgtT22B.1.2210.000142
ORF1ab/nsp31234V1234VgtGgtT22B.1.2430.000139
ORF1ab/nsp31234V1234VgtGgtC22B.1.351.50.001199
ORF1ab/nsp31234V1234MGtgAtg22B.1.4290.000047
ORF1ab/nsp31234V1234LGtgTtg22B.1.4290.000047
ORF1ab/nsp31234V1234VgtGgtT22B.1.466.20.000782
ORF1ab/nsp31234V1234VgtGgtT22B.1.4700.002809
ORF1ab/nsp31234V1234VgtGgtT22B.1.564.10.003155
ORF1ab/nsp31234V1234delGTG---22B.1.617.20.000008
ORF1ab/nsp31234V1234AgTggCg22B.1.617.20.000008
ORF1ab/nsp31234V1234VgtGgtT22B.1.6200.001892
ORF1ab/nsp31234V1234VgtGgtT22D.20.00015
ORF1ab/nsp31234V1234LGtgTtg12D.20.000075
ORF1ab/nsp31234V1234LGtgCtg12D.20.000075
ORF1ab/nsp31234V1234MGtgAtg22P.10.000032
ORF1ab/nsp31234V1234VgtGgtT22P.1.120.000968
ORF1ab/nsp31234V1234MGtgAtg11A.10.000282
ORF1ab/nsp31234V1234EgTggAg11A.2.40.003367
ORF1ab/nsp31234V1234LGtgTtg11AY.10.000396
ORF1ab/nsp31234V1234AgTggCg11AY.1000.000046
ORF1ab/nsp31234V1234delGTG---11AY.1010.00049
ORF1ab/nsp31234V1234VgtGgtT11AY.1010.00049
ORF1ab/nsp31234V1234LGtgTtg11AY.1020.000027
ORF1ab/nsp31234V1234VgtGgtC11AY.1090.00074
ORF1ab/nsp31234V1234LGtgTtg11AY.1100.000113
ORF1ab/nsp31234V1234LGtgTtg11AY.120.000316
ORF1ab/nsp31234V1234del2GTg--g11AY.120.10.000321
ORF1ab/nsp31234V1234AgTggCg11AY.1210.000135
ORF1ab/nsp31234V1234VgtGgtT11AY.130.000161
ORF1ab/nsp31234V1234VgtGgtT11AY.16.10.00047
ORF1ab/nsp31234V1234AgTggCg11AY.200.000039
ORF1ab/nsp31234V1234LGtgTtg11AY.200.000039
ORF1ab/nsp31234V1234delGTG---11AY.230.00007
ORF1ab/nsp31234V1234LGtgTtg11AY.230.00007
ORF1ab/nsp31234V1234AgTggCg11AY.250.000006
ORF1ab/nsp31234V1234GgTggGg11AY.250.000006
ORF1ab/nsp31234V1234MGtgAtg11AY.260.000028
ORF1ab/nsp31234V1234VgtGgtT11AY.270.000065
ORF1ab/nsp31234V1234LGtgTtg11AY.290.000016
ORF1ab/nsp31234V1234VgtGgtT11AY.29.10.000221
ORF1ab/nsp31234V1234delGTG---11AY.30.00001
ORF1ab/nsp31234V1234delGTG---11AY.330.000067
ORF1ab/nsp31234V1234VgtGgtT11AY.340.000097
ORF1ab/nsp31234V1234LGtgTtg11AY.340.000097
ORF1ab/nsp31234V1234LGtgTtg11AY.350.000233
ORF1ab/nsp31234V1234VgtGgtT11AY.350.000233
ORF1ab/nsp31234V1234VgtGgtT11AY.380.000499
ORF1ab/nsp31234V1234delGTG---11AY.390.000025
ORF1ab/nsp31234V1234LGtgTtg11AY.4.20.000022
ORF1ab/nsp31234V1234LGtgTtg11AY.4.40.000409
ORF1ab/nsp31234V1234delGTG---11AY.4.50.000107
ORF1ab/nsp31234V1234VgtGgtT11AY.400.000964
ORF1ab/nsp31234V1234GgTggGg11AY.430.000004
ORF1ab/nsp31234V1234GgTggGg11AY.440.000006
ORF1ab/nsp31234V1234delGTG---11AY.450.000122
ORF1ab/nsp31234V1234LGtgTtg11AY.450.000122
ORF1ab/nsp31234V1234MGtgAtg11AY.460.000104
ORF1ab/nsp31234V1234GgTggGg11AY.460.000104
ORF1ab/nsp31234V1234MGtgAtg11AY.46.20.000635
ORF1ab/nsp31234V1234MGtgAtg11AY.470.000031
ORF1ab/nsp31234V1234VgtGgtT11AY.480.000465
ORF1ab/nsp31234V1234VgtGgtT11AY.5.30.000337
ORF1ab/nsp31234V1234LGtgTtg11AY.5.30.000337
ORF1ab/nsp31234V1234VgtGgtA11AY.5.40.000277
ORF1ab/nsp31234V1234LGtgTtg11AY.510.000909
ORF1ab/nsp31234V1234VgtGgtT11AY.590.00053
ORF1ab/nsp31234V1234LGtgTtg11AY.60.000041
ORF1ab/nsp31234V1234VgtGgtT11AY.640.000595
ORF1ab/nsp31234V1234LGtgTtg11AY.640.000595
ORF1ab/nsp31234V1234VgtGgtT11AY.660.00107
ORF1ab/nsp31234V1234delGTG---11AY.660.00107
ORF1ab/nsp31234V1234LGtgTtg11AY.670.000464
ORF1ab/nsp31234V1234VgtGgtT11AY.680.000274
ORF1ab/nsp31234V1234VgtGgtT11AY.70.000196
ORF1ab/nsp31234V1234MGtgAtg11AY.70.000196
ORF1ab/nsp31234V1234VgtGgtT11AY.7.20.000559
ORF1ab/nsp31234V1234del1gtGgt-11AY.710.000475
ORF1ab/nsp31234V1234VgtGgtT11AY.740.000116
ORF1ab/nsp31234V1234delGTG---11AY.750.000056
ORF1ab/nsp31234V1234VgtGgtT11AY.890.004902
ORF1ab/nsp31234V1234LGtgTtg11AY.9.20.000037
ORF1ab/nsp31234V1234VgtGgtT11AY.940.000443
ORF1ab/nsp31234V1234LGtgTtg11AY.980.000079
ORF1ab/nsp31234V1234delGTG---11AY.990.001049
ORF1ab/nsp31234V1234MGtgAtg11AY.99.20.000092
ORF1ab/nsp31234V1234del2GTg--g11B0.000128
ORF1ab/nsp31234V1234LGtgTtg11B0.000128
ORF1ab/nsp31234V1234del1gtGgt-11B.10.000009
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.10.000327
ORF1ab/nsp31234V1234GgTggGg11B.1.1.10.000327
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.1330.008475
ORF1ab/nsp31234V1234delGTG---11B.1.1.1590.004673
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2140.000055
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.2220.000204
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.2840.000107
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.2940.001266
ORF1ab/nsp31234V1234delGTG---11B.1.1.3040.002809
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3180.000302
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.3230.014085
ORF1ab/nsp31234V1234delGTG---11B.1.1.3480.000796
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3560.008547
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.3690.000446
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.370.000193
ORF1ab/nsp31234V1234MGtgAtg11B.1.1.3720.000689
ORF1ab/nsp31234V1234EgTggAg11B.1.1.4340.000349
ORF1ab/nsp31234V1234LGtgTtg11B.1.1.5190.00004
ORF1ab/nsp31234V1234VgtGgtA11B.1.1.5260.003546
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.610.008772
ORF1ab/nsp31234V1234VgtGgtT11B.1.1.700.000341
ORF1ab/nsp31234V1234VgtGgtA11B.1.160.270.015152
ORF1ab/nsp31234V1234AgTggCg11B.1.160.90.007194
ORF1ab/nsp31234V1234delGTG---11B.1.177.620.001192
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.730.000566
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.810.000189
ORF1ab/nsp31234V1234delGTG---11B.1.177.830.001481
ORF1ab/nsp31234V1234VgtGgtT11B.1.177.860.000183
ORF1ab/nsp31234V1234LGtgTtg11B.1.1890.004292
ORF1ab/nsp31234V1234VgtGgtT11B.1.1950.005025
ORF1ab/nsp31234V1234VgtGgtT11B.1.2060.000816
ORF1ab/nsp31234V1234VgtGgtT11B.1.2180.005155
ORF1ab/nsp31234V1234VgtGgtT11B.1.221.20.004016
ORF1ab/nsp31234V1234EgTggAg11B.1.221.30.000833
ORF1ab/nsp31234V1234MGtgAtg11B.1.2340.000132
ORF1ab/nsp31234V1234VgtGgtT11B.1.2390.001221
ORF1ab/nsp31234V1234LGtgTtg11B.1.2410.000812
ORF1ab/nsp31234V1234VgtGgtT11B.1.2420.018868
ORF1ab/nsp31234V1234LGtgTtg11B.1.2430.00007
ORF1ab/nsp31234V1234MGtgAtg11B.1.2580.000067
ORF1ab/nsp31234V1234delGTG---11B.1.2580.000067
ORF1ab/nsp31234V1234LGtgTtg11B.1.2670.018519
ORF1ab/nsp31234V1234VgtGgtT11B.1.3050.002151
ORF1ab/nsp31234V1234LGtgCtg11B.1.3260.007576
ORF1ab/nsp31234V1234VgtGgtT11B.1.3490.000715
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.180.00042
ORF1ab/nsp31234V1234VgtGgtT11B.1.36.360.000602
ORF1ab/nsp31234V1234VgtGgtT11B.1.3610.001289
ORF1ab/nsp31234V1234VgtGgtT11B.1.3630.012987
ORF1ab/nsp31234V1234VgtGgtT11B.1.3690.000285
ORF1ab/nsp31234V1234VgtGgtT11B.1.3960.000706
ORF1ab/nsp31234V1234VgtGgtT11B.1.416.10.001563
ORF1ab/nsp31234V1234VgtGgtT11B.1.4240.008065
ORF1ab/nsp31234V1234VgtGgtT11B.1.428.20.033333
ORF1ab/nsp31234V1234VgtGgtT11B.1.4380.006536
ORF1ab/nsp31234V1234VgtGgtT11B.1.4560.003268
ORF1ab/nsp31234V1234AgTggCg11B.1.5030.002488
ORF1ab/nsp31234V1234VgtGgtT11B.1.5250.000113
ORF1ab/nsp31234V1234VgtGgtT11B.1.5640.000426
ORF1ab/nsp31234V1234VgtGgtA11B.1.5680.001111
ORF1ab/nsp31234V1234VgtGgtA11B.1.5750.000303
ORF1ab/nsp31234V1234VgtGgtT11B.1.5770.000687
ORF1ab/nsp31234V1234VgtGgtT11B.1.617.10.000129
ORF1ab/nsp31234V1234MGtgAtg11B.1.617.10.000129
ORF1ab/nsp31234V1234EgTggAg11B.1.617.20.000004
ORF1ab/nsp31234V1234VgtGgtT11B.1.621.10.000506
ORF1ab/nsp31234V1234LGtgTtg11B.1.621.10.000506
ORF1ab/nsp31234V1234VgtGgtT11B.1.6270.00202
ORF1ab/nsp31234V1234delGTG---11B.1.6300.005236
ORF1ab/nsp31234V1234VgtGgtT11B.1.760.011364
ORF1ab/nsp31234V1234LGtgTtg11B.1.9.50.005682
ORF1ab/nsp31234V1234VgtGgtT11B.1.930.000934
ORF1ab/nsp31234V1234LGtgTtg11B.400.000364
ORF1ab/nsp31234V1234MGtgAtg11B.60.00091
ORF1ab/nsp31234V1234VgtGgtT11B.60.00091
ORF1ab/nsp31234V1234LGtgTtg11B.60.00091
ORF1ab/nsp31234V1234LGtGTtA11C.350.000774
ORF1ab/nsp31234V1234VgtGgtT11C.370.000116
ORF1ab/nsp31234V1234AgTggCg11P.10.000016
ORF1ab/nsp31234V1234delGTG---11P.10.000016
ORF1ab/nsp31234V1234VgtGgtT11P.1.170.000162
ORF1ab/nsp31234V1234VgtGgtT11P.40.003802
ORF1ab/nsp31234V1234VgtGgtT11Q.10.000126
ORF1ab/nsp31234V1234AgTggCg11Q.80.000165
ORF1ab/nsp31234V1234MGtgAtg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.