CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1229

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31229V1229FV2047FnonsynGtcTtc5511551116404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtT292426740.9145016404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtA29242480.08481536404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtG292420.0006839956404-6406
ORF1ab/nsp31229V1229IV2047InonsynGtcAtc21721716404-6406
ORF1ab/nsp31229V1229delV2047deldelGTC---494916404-6406
ORF1ab/nsp31229V1229AV2047AnonsyngTcgCc28270.9642866404-6406
ORF1ab/nsp31229V1229AV2047AnonsyngTCgCT2810.03571436404-6406
ORF1ab/nsp31229V1229LV2047LnonsynGtcCtc191916404-6406
ORF1ab/nsp31229V1229GV2047GnonsyngTcgGc141416404-6406
ORF1ab/nsp31229V1229del1V2047del1delGtc-tc530.66404-6406
ORF1ab/nsp31229V1229del1V2047del1delgtCgt-520.46404-6406
ORF1ab/nsp31229V1229PV2047PnonsynGTCCCT1116404-6406
ORF1ab/nsp31229V1229del2V2047del2delgTCg--1116404-6406
ORF1ab/nsp31229V1229DV2047DnonsyngTcgAc1116404-6406

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31229V1229FGtcTtc55115511All0.001054
ORF1ab/nsp31229V1229VgtCgtT26742924All0.000511
ORF1ab/nsp31229V1229VgtCgtA2482924All0.000047
ORF1ab/nsp31229V1229VgtCgtG22924All0
ORF1ab/nsp31229V1229FGtcTtc16911691AY.40.002632
ORF1ab/nsp31229V1229VgtCgtT16391639B.1.3290.995747
ORF1ab/nsp31229V1229FGtcTtc713713B.1.10.012934
ORF1ab/nsp31229V1229FGtcTtc477477B.1.617.20.001796
ORF1ab/nsp31229V1229FGtcTtc311311B.1.1.70.000278
ORF1ab/nsp31229V1229VgtCgtT289291B.1.1.70.000259
ORF1ab/nsp31229V1229VgtCgtA2291B.1.1.70.000002
ORF1ab/nsp31229V1229FGtcTtc272272B.1.2410.220779
ORF1ab/nsp31229V1229FGtcTtc239239AY.430.001059
ORF1ab/nsp31229V1229VgtCgtA173225AY.250.001041
ORF1ab/nsp31229V1229VgtCgtT52225AY.250.000313
ORF1ab/nsp31229V1229IGtcAtc217217All0.000042
ORF1ab/nsp31229V1229FGtcTtc188188B.1.1890.806867
ORF1ab/nsp31229V1229FGtcTtc155155AY.30.001542
ORF1ab/nsp31229V1229FGtcTtc118118AY.440.000718
ORF1ab/nsp31229V1229VgtCgtT9191AY.620.039651
ORF1ab/nsp31229V1229FGtcTtc8686AY.1030.000534
ORF1ab/nsp31229V1229FGtcTtc8282B.10.000751
ORF1ab/nsp31229V1229FGtcTtc8181B.1.20.000713
ORF1ab/nsp31229V1229FGtcTtc6969B.1.1770.000909
ORF1ab/nsp31229V1229FGtcTtc6666B.1.3360.160976
ORF1ab/nsp31229V1229VgtCgtT4955B.1.617.20.000185
ORF1ab/nsp31229V1229VgtCgtA655B.1.617.20.000023
ORF1ab/nsp31229V1229FGtcTtc5454AY.390.001334
ORF1ab/nsp31229V1229VgtCgtT5054B.10.000458
ORF1ab/nsp31229V1229VgtCgtA454B.10.000037
ORF1ab/nsp31229V1229delGTC---4949All0.000009
ORF1ab/nsp31229V1229VgtCgtT4545B.1.1.3350.584416
ORF1ab/nsp31229V1229FGtcTtc4545B.1.4060.272727
ORF1ab/nsp31229V1229FGtcTtc4444P.10.000693
ORF1ab/nsp31229V1229VgtCgtT4343P.10.000677
ORF1ab/nsp31229V1229FGtcTtc3737B.1.1.5190.001469
ORF1ab/nsp31229V1229VgtCgtT3536B.1.20.000308
ORF1ab/nsp31229V1229VgtCgtA136B.1.20.000009
ORF1ab/nsp31229V1229FGtcTtc3333AY.250.000198
ORF1ab/nsp31229V1229VgtCgtT3232B.1.3360.078049
ORF1ab/nsp31229V1229IGtcAtc3232B.1.617.20.00012
ORF1ab/nsp31229V1229FGtcTtc2929AY.750.001625
ORF1ab/nsp31229V1229AgTcgCc2728All0.000005
ORF1ab/nsp31229V1229AgTCgCT128All0
ORF1ab/nsp31229V1229VgtCgtA2727B.1.1390.019795
ORF1ab/nsp31229V1229FGtcTtc2727B.1.5260.000635
ORF1ab/nsp31229V1229IGtcAtc2626AY.1020.000689
ORF1ab/nsp31229V1229VgtCgtT2626B.1.1.821
ORF1ab/nsp31229V1229VgtCgtT2325AY.1030.000143
ORF1ab/nsp31229V1229VgtCgtA225AY.1030.000012
ORF1ab/nsp31229V1229FGtcTtc2424AY.1200.000892
ORF1ab/nsp31229V1229VgtCgtT2424B.1.1.5190.000953
ORF1ab/nsp31229V1229IGtcAtc2323AY.40.000036
ORF1ab/nsp31229V1229VgtCgtT2122AY.40.000033
ORF1ab/nsp31229V1229VgtCgtA122AY.40.000002
ORF1ab/nsp31229V1229FGtcTtc2121AY.1020.000557
ORF1ab/nsp31229V1229VgtCgtT2121B.1.3510.000624
ORF1ab/nsp31229V1229FGtcTtc2020B.1.1.10.006534
ORF1ab/nsp31229V1229LGtcCtc1919All0.000004
ORF1ab/nsp31229V1229FGtcTtc1919B.1.6090.009108
ORF1ab/nsp31229V1229FGtcTtc1818AY.980.001422
ORF1ab/nsp31229V1229VgtCgtT1717A.270.028146
ORF1ab/nsp31229V1229IGtcAtc1717AY.200.000661
ORF1ab/nsp31229V1229FGtcTtc1717B.1.1.3190.298246
ORF1ab/nsp31229V1229FGtcTtc1717P.1.100.004581
ORF1ab/nsp31229V1229FGtcTtc1616AY.840.006999
ORF1ab/nsp31229V1229FGtcTtc1616AY.90.001082
ORF1ab/nsp31229V1229FGtcTtc1515AY.260.000425
ORF1ab/nsp31229V1229VgtCgtT1215B.1.10.000218
ORF1ab/nsp31229V1229VgtCgtA315B.1.10.000054
ORF1ab/nsp31229V1229IGtcAtc1515B.1.1.70.000013
ORF1ab/nsp31229V1229VgtCgtT1515P.1.40.014648
ORF1ab/nsp31229V1229GgTcgGc1414All0.000003
ORF1ab/nsp31229V1229FGtcTtc1414B.1.1.2140.000776
ORF1ab/nsp31229V1229IGtcAtc1414B.1.177.600.003058
ORF1ab/nsp31229V1229FGtcTtc1414B.1.2580.000932
ORF1ab/nsp31229V1229FGtcTtc1414P.1.140.000669
ORF1ab/nsp31229V1229FGtcTtc1313AY.50.000268
ORF1ab/nsp31229V1229FGtcTtc1313B.1.4270.000656
ORF1ab/nsp31229V1229FGtcTtc1212B.1.1.2910.008909
ORF1ab/nsp31229V1229FGtcTtc1212B.1.2430.000835
ORF1ab/nsp31229V1229FGtcTtc1212P.1.150.002788
ORF1ab/nsp31229V1229VgtCgtT1111AY.1200.000409
ORF1ab/nsp31229V1229IGtcAtc1111AY.150.024444
ORF1ab/nsp31229V1229FGtcTtc1111AY.200.000428
ORF1ab/nsp31229V1229VgtCgtA1011AY.230.000697
ORF1ab/nsp31229V1229VgtCgtT111AY.230.00007
ORF1ab/nsp31229V1229IGtcAtc1111B.1.5820.005397
ORF1ab/nsp31229V1229FGtcTtc1111D.20.000825
ORF1ab/nsp31229V1229FGtcTtc1010AY.1190.000353
ORF1ab/nsp31229V1229VgtCgtT910AY.30.00009
ORF1ab/nsp31229V1229VgtCgtA110AY.30.00001
ORF1ab/nsp31229V1229VgtCgtT59AY.440.00003
ORF1ab/nsp31229V1229VgtCgtA39AY.440.000018
ORF1ab/nsp31229V1229VgtCgtG19AY.440.000006
ORF1ab/nsp31229V1229FGtcTtc99AY.910.006574
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.1760.003954
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.2220.001836
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.2690.012179
ORF1ab/nsp31229V1229FGtcTtc99B.1.5250.001018
ORF1ab/nsp31229V1229FGtcTtc88AY.140.000704
ORF1ab/nsp31229V1229FGtcTtc88AY.230.000558
ORF1ab/nsp31229V1229FGtcTtc88AY.330.000534
ORF1ab/nsp31229V1229FGtcTtc88AY.4.50.00086
ORF1ab/nsp31229V1229FGtcTtc88AY.460.000833
ORF1ab/nsp31229V1229FGtcTtc88B.1.1600.00025
ORF1ab/nsp31229V1229IGtcAtc88B.1.20.00007
ORF1ab/nsp31229V1229VgtCgtT88B.1.3670.006339
ORF1ab/nsp31229V1229FGtcTtc77AY.1000.000322
ORF1ab/nsp31229V1229VgtCgtT77AY.1020.000186
ORF1ab/nsp31229V1229VgtCgtT77AY.1190.000247
ORF1ab/nsp31229V1229IGtcAtc77AY.4.20.000152
ORF1ab/nsp31229V1229FGtcTtc77AY.60.000288
ORF1ab/nsp31229V1229FGtcTtc77B.1.1.700.002387
ORF1ab/nsp31229V1229VgtCgtT77B.1.1770.000092
ORF1ab/nsp31229V1229VgtCgtT77B.1.2210.000497
ORF1ab/nsp31229V1229FGtcTtc77B.1.3510.000208
ORF1ab/nsp31229V1229FGtcTtc77B.1.360.001021
ORF1ab/nsp31229V1229FGtcTtc77B.1.4290.000165
ORF1ab/nsp31229V1229FGtcTtc77B.1.617.10.000903
ORF1ab/nsp31229V1229GgTcgGc66AY.250.000036
ORF1ab/nsp31229V1229IGtcAtc66AY.430.000027
ORF1ab/nsp31229V1229GgTcgGc66B.1.10.000109
ORF1ab/nsp31229V1229LGtcCtc66B.1.1.70.000005
ORF1ab/nsp31229V1229FGtcTtc66B.1.177.600.001311
ORF1ab/nsp31229V1229FGtcTtc66B.1.2210.000426
ORF1ab/nsp31229V1229VgtCgtT66B.1.4270.000303
ORF1ab/nsp31229V1229FGtcTtc55A.2.50.002495
ORF1ab/nsp31229V1229del1Gtc-tc35All0.000001
ORF1ab/nsp31229V1229del1gtCgt-25All0
ORF1ab/nsp31229V1229FGtcTtc55AY.1170.000423
ORF1ab/nsp31229V1229FGtcTtc55AY.290.000079
ORF1ab/nsp31229V1229AgTcgCc55AY.40.000008
ORF1ab/nsp31229V1229FGtcTtc55AY.4.20.000108
ORF1ab/nsp31229V1229FGtcTtc55AY.450.000608
ORF1ab/nsp31229V1229VgtCgtT55AY.740.000578
ORF1ab/nsp31229V1229FGtcTtc55B.1.1.1940.024752
ORF1ab/nsp31229V1229delGTC---55B.1.1.70.000004
ORF1ab/nsp31229V1229VgtCgtT55B.1.5650.004052
ORF1ab/nsp31229V1229IGtcAtc55P.10.000079
ORF1ab/nsp31229V1229FGtcTtc55P.20.000933
ORF1ab/nsp31229V1229FGtcTtc55Q.30.000725
ORF1ab/nsp31229V1229FGtcTtc44A.2.5.30.041237
ORF1ab/nsp31229V1229IGtcAtc44AY.1030.000025
ORF1ab/nsp31229V1229FGtcTtc44AY.300.001583
ORF1ab/nsp31229V1229VgtCgtT44AY.390.000099
ORF1ab/nsp31229V1229IGtcAtc44AY.390.000099
ORF1ab/nsp31229V1229FGtcTtc44AY.480.00186
ORF1ab/nsp31229V1229VgtCgtT44AY.50.000083
ORF1ab/nsp31229V1229FGtcTtc44AY.530.00115
ORF1ab/nsp31229V1229VgtCgtT44AY.750.000224
ORF1ab/nsp31229V1229FGtcTtc44B.1.1.4090.011331
ORF1ab/nsp31229V1229AgTcgCc44B.1.1.70.000004
ORF1ab/nsp31229V1229FGtcTtc44B.1.2400.000862
ORF1ab/nsp31229V1229FGtcTtc44B.1.438.10.000429
ORF1ab/nsp31229V1229VgtCgtT33AY.1000.000138
ORF1ab/nsp31229V1229VgtCgtT33AY.200.000117
ORF1ab/nsp31229V1229FGtcTtc33AY.360.000445
ORF1ab/nsp31229V1229delGTC---33AY.40.000005
ORF1ab/nsp31229V1229FGtcTtc33AY.420.000121
ORF1ab/nsp31229V1229VgtCgtT33AY.420.000121
ORF1ab/nsp31229V1229IGtcAtc33AY.460.000312
ORF1ab/nsp31229V1229VgtCgtT33AY.610.000314
ORF1ab/nsp31229V1229FGtcTtc33AY.640.001786
ORF1ab/nsp31229V1229FGtcTtc33AY.9.20.00011
ORF1ab/nsp31229V1229FGtcTtc33AY.99.20.000276
ORF1ab/nsp31229V1229delGTC---33B.10.000027
ORF1ab/nsp31229V1229delGTC---33B.1.10.000054
ORF1ab/nsp31229V1229LGtcCtc33B.1.10.000054
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.1420.052632
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.2770.002276
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.4160.002715
ORF1ab/nsp31229V1229VgtCgtT33B.1.1600.000094
ORF1ab/nsp31229V1229FGtcTtc33B.1.2060.002447
ORF1ab/nsp31229V1229VgtCgtT33B.1.36.80.003
ORF1ab/nsp31229V1229FGtcTtc33B.1.5960.000261
ORF1ab/nsp31229V1229FGtcTtc33P.1.40.00293
ORF1ab/nsp31229V1229VgtCgtT22A.23.10.001408
ORF1ab/nsp31229V1229IGtcAtc22AY.1000.000092
ORF1ab/nsp31229V1229VgtCgtA22AY.1050.001286
ORF1ab/nsp31229V1229IGtcAtc22AY.1110.000366
ORF1ab/nsp31229V1229FGtcTtc22AY.1130.000285
ORF1ab/nsp31229V1229FGtcTtc22AY.1140.000462
ORF1ab/nsp31229V1229delGTC---22AY.1200.000074
ORF1ab/nsp31229V1229delGTC---22AY.1210.000271
ORF1ab/nsp31229V1229FGtcTtc22AY.160.000759
ORF1ab/nsp31229V1229delGTC---22AY.250.000012
ORF1ab/nsp31229V1229AgTcgCc22AY.260.000057
ORF1ab/nsp31229V1229VgtCgtT22AY.260.000057
ORF1ab/nsp31229V1229FGtcTtc22AY.320.001065
ORF1ab/nsp31229V1229FGtcTtc22AY.39.10.000079
ORF1ab/nsp31229V1229VgtCgtT22AY.430.000009
ORF1ab/nsp31229V1229delGTC---22AY.430.000009
ORF1ab/nsp31229V1229IGtcAtc22AY.50.000041
ORF1ab/nsp31229V1229delGTC---22AY.540.000191
ORF1ab/nsp31229V1229VgtCgtT22AY.540.000191
ORF1ab/nsp31229V1229FGtcTtc22AY.610.00021
ORF1ab/nsp31229V1229FGtcTtc22AY.700.000417
ORF1ab/nsp31229V1229FGtcTtc22AY.710.00095
ORF1ab/nsp31229V1229VgtCgtT22AY.75.10.000361
ORF1ab/nsp31229V1229FGtcTtc22AY.880.001768
ORF1ab/nsp31229V1229VgtCgtT22AY.980.000158
ORF1ab/nsp31229V1229VgtCgtT22AY.99.10.003106
ORF1ab/nsp31229V1229FGtcTtc22B0.000256
ORF1ab/nsp31229V1229AgTcgCc12B.1.10.000018
ORF1ab/nsp31229V1229AgTCgCT12B.1.10.000018
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.1980.002937
ORF1ab/nsp31229V1229GgTcgGc22B.1.1.250.001137
ORF1ab/nsp31229V1229VgtCgtT22B.1.1.250.001137
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.2840.000215
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.2980.001724
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.3180.000604
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.3850.008929
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.4190.014815
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.4300.083333
ORF1ab/nsp31229V1229AgTcgCc22B.1.1770.000026
ORF1ab/nsp31229V1229IGtcAtc22B.1.1770.000026
ORF1ab/nsp31229V1229VgtCgtT22B.1.177.110.003396
ORF1ab/nsp31229V1229VgtCgtA22B.1.2350.005038
ORF1ab/nsp31229V1229VgtCgtT12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtA12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtT22B.1.3780.013699
ORF1ab/nsp31229V1229FGtcTtc22B.1.4000.000858
ORF1ab/nsp31229V1229IGtcAtc22B.1.4270.000101
ORF1ab/nsp31229V1229VgtCgtT22B.1.4290.000047
ORF1ab/nsp31229V1229FGtcTtc22B.1.4440.031746
ORF1ab/nsp31229V1229VgtCgtT22B.1.4510.016393
ORF1ab/nsp31229V1229VgtCgtT22B.1.466.20.000782
ORF1ab/nsp31229V1229VgtCgtT22B.1.5260.000047
ORF1ab/nsp31229V1229FGtcTtc22B.1.5490.014388
ORF1ab/nsp31229V1229FGtcTtc22B.1.5580.009132
ORF1ab/nsp31229V1229FGtcTtc22B.1.5650.001621
ORF1ab/nsp31229V1229FGtcTtc22B.1.5750.000607
ORF1ab/nsp31229V1229delGTC---22B.1.617.20.000008
ORF1ab/nsp31229V1229FGtcTtc22B.1.6340.006849
ORF1ab/nsp31229V1229FGtcTtc22B.1.6370.000146
ORF1ab/nsp31229V1229FGtcTtc22C.160.002121
ORF1ab/nsp31229V1229IGtcAtc22C.370.000232
ORF1ab/nsp31229V1229FGtcTtc22N.50.003534
ORF1ab/nsp31229V1229FGtcTtc22P.1.120.000968
ORF1ab/nsp31229V1229FGtcTtc22P.1.20.002312
ORF1ab/nsp31229V1229VgtCgtT22Q.80.00033
ORF1ab/nsp31229V1229LGtcCtc22W.10.017391
ORF1ab/nsp31229V1229VgtCgtT11A.10.000282
ORF1ab/nsp31229V1229VgtCgtT11A.20.000662
ORF1ab/nsp31229V1229del2gTCg--11All0
ORF1ab/nsp31229V1229PGTCCCT11All0
ORF1ab/nsp31229V1229DgTcgAc11All0
ORF1ab/nsp31229V1229VgtCgtT11AU.30.00211
ORF1ab/nsp31229V1229IGtcAtc11AY.100.00053
ORF1ab/nsp31229V1229delGTC---11AY.1000.000046
ORF1ab/nsp31229V1229delGTC---11AY.1010.00049
ORF1ab/nsp31229V1229FGtcTtc11AY.1050.000643
ORF1ab/nsp31229V1229VgtCgtT11AY.1110.000183
ORF1ab/nsp31229V1229VgtCgtT11AY.1130.000142
ORF1ab/nsp31229V1229FGtcTtc11AY.1160.000287
ORF1ab/nsp31229V1229FGtcTtc11AY.116.10.000311
ORF1ab/nsp31229V1229VgtCgtT11AY.1170.000085
ORF1ab/nsp31229V1229FGtcTtc11AY.120.000316
ORF1ab/nsp31229V1229FGtcTtc11AY.130.000161
ORF1ab/nsp31229V1229VgtCgtA11AY.130.000161
ORF1ab/nsp31229V1229LGtcCtc11AY.140.000088
ORF1ab/nsp31229V1229VgtCgtT11AY.140.000088
ORF1ab/nsp31229V1229FGtcTtc11AY.210.001898
ORF1ab/nsp31229V1229delGTC---11AY.230.00007
ORF1ab/nsp31229V1229LGtcCtc11AY.250.000006
ORF1ab/nsp31229V1229IGtcAtc11AY.250.000006
ORF1ab/nsp31229V1229VgtCgtT11AY.290.000016
ORF1ab/nsp31229V1229AgTcgCc11AY.30.00001
ORF1ab/nsp31229V1229IGtcAtc11AY.30.00001
ORF1ab/nsp31229V1229delGTC---11AY.30.00001
ORF1ab/nsp31229V1229VgtCgtT11AY.3.10.000085
ORF1ab/nsp31229V1229VgtCgtT11AY.330.000067
ORF1ab/nsp31229V1229delGTC---11AY.330.000067
ORF1ab/nsp31229V1229IGtcAtc11AY.340.000097
ORF1ab/nsp31229V1229FGtcTtc11AY.34.10.00051
ORF1ab/nsp31229V1229VgtCgtA11AY.34.10.00051
ORF1ab/nsp31229V1229FGtcTtc11AY.380.000499
ORF1ab/nsp31229V1229LGtcCtc11AY.390.000025
ORF1ab/nsp31229V1229delGTC---11AY.390.000025
ORF1ab/nsp31229V1229VgtCgtT11AY.39.10.00004
ORF1ab/nsp31229V1229del2gTCg--11AY.40.000002
ORF1ab/nsp31229V1229VgtCgtT11AY.4.20.000022
ORF1ab/nsp31229V1229AgTcgCc11AY.4.30.000842
ORF1ab/nsp31229V1229FGtcTtc11AY.410.000294
ORF1ab/nsp31229V1229LGtcCtc11AY.430.000004
ORF1ab/nsp31229V1229IGtcAtc11AY.440.000006
ORF1ab/nsp31229V1229delGTC---11AY.450.000122
ORF1ab/nsp31229V1229IGtcAtc11AY.450.000122
ORF1ab/nsp31229V1229VgtCgtT11AY.460.000104
ORF1ab/nsp31229V1229delGTC---11AY.460.000104
ORF1ab/nsp31229V1229FGtcTtc11AY.46.40.000165
ORF1ab/nsp31229V1229delGTC---11AY.46.50.000198
ORF1ab/nsp31229V1229AgTcgCc11AY.46.60.000072
ORF1ab/nsp31229V1229VgtCgtT11AY.470.000031
ORF1ab/nsp31229V1229FGtcTtc11AY.470.000031
ORF1ab/nsp31229V1229VgtCgtT11AY.5.40.000277
ORF1ab/nsp31229V1229VgtCgtA11AY.520.000814
ORF1ab/nsp31229V1229IGtcAtc11AY.540.000095
ORF1ab/nsp31229V1229FGtcTtc11AY.550.000917
ORF1ab/nsp31229V1229IGtcAtc11AY.570.000656
ORF1ab/nsp31229V1229IGtcAtc11AY.580.000907
ORF1ab/nsp31229V1229FGtcTtc11AY.600.000938
ORF1ab/nsp31229V1229IGtcAtc11AY.650.000533
ORF1ab/nsp31229V1229FGtcTtc11AY.650.000533
ORF1ab/nsp31229V1229delGTC---11AY.660.00107
ORF1ab/nsp31229V1229FGtcTtc11AY.670.000464
ORF1ab/nsp31229V1229VgtCgtT11AY.690.000187
ORF1ab/nsp31229V1229FGtcTtc11AY.7.20.000559
ORF1ab/nsp31229V1229VgtCgtT11AY.710.000475
ORF1ab/nsp31229V1229del1gtCgt-11AY.710.000475
ORF1ab/nsp31229V1229FGtcTtc11AY.740.000116
ORF1ab/nsp31229V1229DgTcgAc11AY.740.000116
ORF1ab/nsp31229V1229IGtcAtc11AY.840.000437
ORF1ab/nsp31229V1229VgtCgtT11AY.880.000884
ORF1ab/nsp31229V1229VgtCgtT11AY.90.000068
ORF1ab/nsp31229V1229LGtcCtc11AY.90.000068
ORF1ab/nsp31229V1229AgTcgCc11AY.9.10.000084
ORF1ab/nsp31229V1229FGtcTtc11AY.9.10.000084
ORF1ab/nsp31229V1229VgtCgtT11AY.9.20.000037
ORF1ab/nsp31229V1229VgtCgtT11AY.920.000287
ORF1ab/nsp31229V1229FGtcTtc11AY.930.000273
ORF1ab/nsp31229V1229IGtcAtc11AY.980.000079
ORF1ab/nsp31229V1229FGtcTtc11AY.98.10.000048
ORF1ab/nsp31229V1229delGTC---11AY.990.001049
ORF1ab/nsp31229V1229FGtcTtc11AZ.20.000821
ORF1ab/nsp31229V1229VgtCgtT11B0.000128
ORF1ab/nsp31229V1229del1Gtc-tc11B.10.000009
ORF1ab/nsp31229V1229AgTcgCc11B.10.000009
ORF1ab/nsp31229V1229IGtcAtc11B.1.10.000018
ORF1ab/nsp31229V1229LGtcCtc11B.1.1.10.000327
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.1170.009709
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1220.045455
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1370.0125
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1450.037037
ORF1ab/nsp31229V1229delGTC---11B.1.1.1590.004673
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1710.003676
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp31229V1229AgTcgCc11B.1.1.2050.003717
ORF1ab/nsp31229V1229delGTC---11B.1.1.2140.000055
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.2540.011236
ORF1ab/nsp31229V1229VgtCgtG11B.1.1.2630.001558
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.280.000311
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.2990.012195
ORF1ab/nsp31229V1229delGTC---11B.1.1.3040.002809
ORF1ab/nsp31229V1229IGtcAtc11B.1.1.3170.000412
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3180.000302
ORF1ab/nsp31229V1229AgTcgCc11B.1.1.3260.001761
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3260.001761
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.330.000421
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.330.000421
ORF1ab/nsp31229V1229delGTC---11B.1.1.3480.000796
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3690.000446
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.370.000193
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3810.04
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3880.045455
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.390.00051
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3970.002252
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3980.003226
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.4040.015873
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.4070.041667
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.4340.000349
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.630.000386
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.700.000341
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.890.006061
ORF1ab/nsp31229V1229FGtcTtc11B.1.1110.001175
ORF1ab/nsp31229V1229VgtCgtT11B.1.160.140.002119
ORF1ab/nsp31229V1229FGtcTtc11B.1.177.240.001295
ORF1ab/nsp31229V1229delGTC---11B.1.177.350.000691
ORF1ab/nsp31229V1229FGtcTtc11B.1.177.40.000211
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.510.004566
ORF1ab/nsp31229V1229delGTC---11B.1.177.620.001192
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.690.001484
ORF1ab/nsp31229V1229delGTC---11B.1.177.830.001481
ORF1ab/nsp31229V1229VgtCgtT11B.1.1950.005025
ORF1ab/nsp31229V1229del1gtCgt-11B.1.20.000009
ORF1ab/nsp31229V1229delGTC---11B.1.20.000009
ORF1ab/nsp31229V1229FGtcTtc11B.1.214.20.0006
ORF1ab/nsp31229V1229FGtcTtc11B.1.2340.000132
ORF1ab/nsp31229V1229VgtCgtA11B.1.2580.000067
ORF1ab/nsp31229V1229del1Gtc-tc11B.1.258.140.00098
ORF1ab/nsp31229V1229FGtcTtc11B.1.258.140.00098
ORF1ab/nsp31229V1229FGtcTtc11B.1.258.170.000104
ORF1ab/nsp31229V1229AgTcgCc11B.1.3110.000275
ORF1ab/nsp31229V1229VgtCgtT11B.1.3190.003049
ORF1ab/nsp31229V1229VgtCgtT11B.1.3250.006897
ORF1ab/nsp31229V1229FGtcTtc11B.1.3490.000715
ORF1ab/nsp31229V1229FGtcTtc11B.1.350.008475
ORF1ab/nsp31229V1229VgtCgtA11B.1.351.30.000876
ORF1ab/nsp31229V1229AgTcgCc11B.1.36.10.00114
ORF1ab/nsp31229V1229IGtcAtc11B.1.36.220.001208
ORF1ab/nsp31229V1229FGtcTtc11B.1.36.270.000763
ORF1ab/nsp31229V1229FGtcTtc11B.1.3670.000792
ORF1ab/nsp31229V1229VgtCgtT11B.1.3690.000285
ORF1ab/nsp31229V1229IGtcAtc11B.1.3690.000285
ORF1ab/nsp31229V1229VgtCgtT11B.1.4250.002994
ORF1ab/nsp31229V1229AgTcgCc11B.1.4270.00005
ORF1ab/nsp31229V1229delGTC---11B.1.428.20.033333
ORF1ab/nsp31229V1229AgTcgCc11B.1.4290.000024
ORF1ab/nsp31229V1229FGtcTtc11B.1.4360.001029
ORF1ab/nsp31229V1229IGtcAtc11B.1.4560.003268
ORF1ab/nsp31229V1229IGtcAtc11B.1.4590.004082
ORF1ab/nsp31229V1229FGtcTtc11B.1.4680.005714
ORF1ab/nsp31229V1229FGtcTtc11B.1.4700.001404
ORF1ab/nsp31229V1229VgtCgtT11B.1.5090.000866
ORF1ab/nsp31229V1229VgtCgtT11B.1.5250.000113
ORF1ab/nsp31229V1229VgtCgtT11B.1.5460.003704
ORF1ab/nsp31229V1229del1Gtc-tc11B.1.5460.003704
ORF1ab/nsp31229V1229VgtCgtT11B.1.5510.00129
ORF1ab/nsp31229V1229VgtCgtA11B.1.5600.00463
ORF1ab/nsp31229V1229FGtcTtc11B.1.5640.000426
ORF1ab/nsp31229V1229VgtCgtT11B.1.5750.000303
ORF1ab/nsp31229V1229FGtcTtc11B.1.5820.000491
ORF1ab/nsp31229V1229AgTcgCc11B.1.5960.000087
ORF1ab/nsp31229V1229VgtCgtT11B.1.5960.000087
ORF1ab/nsp31229V1229AgTcgCc11B.1.617.20.000004
ORF1ab/nsp31229V1229FGtcTtc11B.1.6200.000946
ORF1ab/nsp31229V1229IGtcAtc11B.1.6210.000089
ORF1ab/nsp31229V1229FGtcTtc11B.1.6210.000089
ORF1ab/nsp31229V1229VgtCgtA11B.1.6230.000536
ORF1ab/nsp31229V1229delGTC---11B.1.6300.005236
ORF1ab/nsp31229V1229FGtcTtc11B.1.690.035714
ORF1ab/nsp31229V1229FGtcTtc11B.1.9.50.005682
ORF1ab/nsp31229V1229LGtcCtc11B.290.003509
ORF1ab/nsp31229V1229FGtcTtc11B.400.000364
ORF1ab/nsp31229V1229FGtcTtc11B.450.003831
ORF1ab/nsp31229V1229delGTC---11C.20.016129
ORF1ab/nsp31229V1229PGTCCCT11C.350.000774
ORF1ab/nsp31229V1229FGtcTtc11C.360.000911
ORF1ab/nsp31229V1229FGtcTtc11C.370.000116
ORF1ab/nsp31229V1229VgtCgtT11D.20.000075
ORF1ab/nsp31229V1229VgtCgtT11N.50.001767
ORF1ab/nsp31229V1229delGTC---11P.10.000016
ORF1ab/nsp31229V1229VgtCgtA11P.20.000187
ORF1ab/nsp31229V1229VgtCgtT11P.30.001595
ORF1ab/nsp31229V1229FGtcTtc11Q.70.001111
ORF1ab/nsp31229V1229FGtcTtc11Q.80.000165
ORF1ab/nsp31229V1229LGtcCtc11Q.80.000165
ORF1ab/nsp31229V1229VgtCgtT11W.40.001351