CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1229

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31229V1229FV2047FnonsynGtcTtc5511551116404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtT292426740.9145016404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtA29242480.08481536404-6406
ORF1ab/nsp31229V1229VV2047VsyngtCgtG292420.0006839956404-6406
ORF1ab/nsp31229V1229IV2047InonsynGtcAtc21721716404-6406
ORF1ab/nsp31229V1229delV2047deldelGTC---494916404-6406
ORF1ab/nsp31229V1229AV2047AnonsyngTcgCc28270.9642866404-6406
ORF1ab/nsp31229V1229AV2047AnonsyngTCgCT2810.03571436404-6406
ORF1ab/nsp31229V1229LV2047LnonsynGtcCtc191916404-6406
ORF1ab/nsp31229V1229GV2047GnonsyngTcgGc141416404-6406
ORF1ab/nsp31229V1229del1V2047del1delGtc-tc530.66404-6406
ORF1ab/nsp31229V1229del1V2047del1delgtCgt-520.46404-6406
ORF1ab/nsp31229V1229PV2047PnonsynGTCCCT1116404-6406
ORF1ab/nsp31229V1229del2V2047del2delgTCg--1116404-6406
ORF1ab/nsp31229V1229DV2047DnonsyngTcgAc1116404-6406

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31229V1229FGtcTtc55115511All0.001054
ORF1ab/nsp31229V1229VgtCgtT26742924All0.000511
ORF1ab/nsp31229V1229VgtCgtA2482924All0.000047
ORF1ab/nsp31229V1229VgtCgtG22924All0
ORF1ab/nsp31229V1229FGtcTtc16911691AY.40.002632
ORF1ab/nsp31229V1229VgtCgtT16391639B.1.3290.995747
ORF1ab/nsp31229V1229FGtcTtc713713B.1.10.012934
ORF1ab/nsp31229V1229FGtcTtc477477B.1.617.20.001796
ORF1ab/nsp31229V1229FGtcTtc311311B.1.1.70.000278
ORF1ab/nsp31229V1229VgtCgtT289291B.1.1.70.000259
ORF1ab/nsp31229V1229VgtCgtA2291B.1.1.70.000002
ORF1ab/nsp31229V1229FGtcTtc272272B.1.2410.220779
ORF1ab/nsp31229V1229FGtcTtc239239AY.430.001059
ORF1ab/nsp31229V1229VgtCgtA173225AY.250.001041
ORF1ab/nsp31229V1229VgtCgtT52225AY.250.000313
ORF1ab/nsp31229V1229IGtcAtc217217All0.000042
ORF1ab/nsp31229V1229FGtcTtc188188B.1.1890.806867
ORF1ab/nsp31229V1229FGtcTtc155155AY.30.001542
ORF1ab/nsp31229V1229FGtcTtc118118AY.440.000718
ORF1ab/nsp31229V1229VgtCgtT9191AY.620.039651
ORF1ab/nsp31229V1229FGtcTtc8686AY.1030.000534
ORF1ab/nsp31229V1229FGtcTtc8282B.10.000751
ORF1ab/nsp31229V1229FGtcTtc8181B.1.20.000713
ORF1ab/nsp31229V1229FGtcTtc6969B.1.1770.000909
ORF1ab/nsp31229V1229FGtcTtc6666B.1.3360.160976
ORF1ab/nsp31229V1229VgtCgtT4955B.1.617.20.000185
ORF1ab/nsp31229V1229VgtCgtA655B.1.617.20.000023
ORF1ab/nsp31229V1229FGtcTtc5454AY.390.001334
ORF1ab/nsp31229V1229VgtCgtT5054B.10.000458
ORF1ab/nsp31229V1229VgtCgtA454B.10.000037
ORF1ab/nsp31229V1229delGTC---4949All0.000009
ORF1ab/nsp31229V1229VgtCgtT4545B.1.1.3350.584416
ORF1ab/nsp31229V1229FGtcTtc4545B.1.4060.272727
ORF1ab/nsp31229V1229FGtcTtc4444P.10.000693
ORF1ab/nsp31229V1229VgtCgtT4343P.10.000677
ORF1ab/nsp31229V1229FGtcTtc3737B.1.1.5190.001469
ORF1ab/nsp31229V1229VgtCgtT3536B.1.20.000308
ORF1ab/nsp31229V1229VgtCgtA136B.1.20.000009
ORF1ab/nsp31229V1229FGtcTtc3333AY.250.000198
ORF1ab/nsp31229V1229VgtCgtT3232B.1.3360.078049
ORF1ab/nsp31229V1229IGtcAtc3232B.1.617.20.00012
ORF1ab/nsp31229V1229FGtcTtc2929AY.750.001625
ORF1ab/nsp31229V1229AgTcgCc2728All0.000005
ORF1ab/nsp31229V1229AgTCgCT128All0
ORF1ab/nsp31229V1229VgtCgtA2727B.1.1390.019795
ORF1ab/nsp31229V1229FGtcTtc2727B.1.5260.000635
ORF1ab/nsp31229V1229IGtcAtc2626AY.1020.000689
ORF1ab/nsp31229V1229VgtCgtT2626B.1.1.821
ORF1ab/nsp31229V1229VgtCgtT2325AY.1030.000143
ORF1ab/nsp31229V1229VgtCgtA225AY.1030.000012
ORF1ab/nsp31229V1229FGtcTtc2424AY.1200.000892
ORF1ab/nsp31229V1229VgtCgtT2424B.1.1.5190.000953
ORF1ab/nsp31229V1229IGtcAtc2323AY.40.000036
ORF1ab/nsp31229V1229VgtCgtT2122AY.40.000033
ORF1ab/nsp31229V1229VgtCgtA122AY.40.000002
ORF1ab/nsp31229V1229FGtcTtc2121AY.1020.000557
ORF1ab/nsp31229V1229VgtCgtT2121B.1.3510.000624
ORF1ab/nsp31229V1229FGtcTtc2020B.1.1.10.006534
ORF1ab/nsp31229V1229LGtcCtc1919All0.000004
ORF1ab/nsp31229V1229FGtcTtc1919B.1.6090.009108
ORF1ab/nsp31229V1229FGtcTtc1818AY.980.001422
ORF1ab/nsp31229V1229VgtCgtT1717A.270.028146
ORF1ab/nsp31229V1229IGtcAtc1717AY.200.000661
ORF1ab/nsp31229V1229FGtcTtc1717B.1.1.3190.298246
ORF1ab/nsp31229V1229FGtcTtc1717P.1.100.004581
ORF1ab/nsp31229V1229FGtcTtc1616AY.840.006999
ORF1ab/nsp31229V1229FGtcTtc1616AY.90.001082
ORF1ab/nsp31229V1229FGtcTtc1515AY.260.000425
ORF1ab/nsp31229V1229VgtCgtT1215B.1.10.000218
ORF1ab/nsp31229V1229VgtCgtA315B.1.10.000054
ORF1ab/nsp31229V1229IGtcAtc1515B.1.1.70.000013
ORF1ab/nsp31229V1229VgtCgtT1515P.1.40.014648
ORF1ab/nsp31229V1229GgTcgGc1414All0.000003
ORF1ab/nsp31229V1229FGtcTtc1414B.1.1.2140.000776
ORF1ab/nsp31229V1229IGtcAtc1414B.1.177.600.003058
ORF1ab/nsp31229V1229FGtcTtc1414B.1.2580.000932
ORF1ab/nsp31229V1229FGtcTtc1414P.1.140.000669
ORF1ab/nsp31229V1229FGtcTtc1313AY.50.000268
ORF1ab/nsp31229V1229FGtcTtc1313B.1.4270.000656
ORF1ab/nsp31229V1229FGtcTtc1212B.1.1.2910.008909
ORF1ab/nsp31229V1229FGtcTtc1212B.1.2430.000835
ORF1ab/nsp31229V1229FGtcTtc1212P.1.150.002788
ORF1ab/nsp31229V1229VgtCgtT1111AY.1200.000409
ORF1ab/nsp31229V1229IGtcAtc1111AY.150.024444
ORF1ab/nsp31229V1229FGtcTtc1111AY.200.000428
ORF1ab/nsp31229V1229VgtCgtA1011AY.230.000697
ORF1ab/nsp31229V1229VgtCgtT111AY.230.00007
ORF1ab/nsp31229V1229IGtcAtc1111B.1.5820.005397
ORF1ab/nsp31229V1229FGtcTtc1111D.20.000825
ORF1ab/nsp31229V1229FGtcTtc1010AY.1190.000353
ORF1ab/nsp31229V1229VgtCgtT910AY.30.00009
ORF1ab/nsp31229V1229VgtCgtA110AY.30.00001
ORF1ab/nsp31229V1229VgtCgtT59AY.440.00003
ORF1ab/nsp31229V1229VgtCgtA39AY.440.000018
ORF1ab/nsp31229V1229VgtCgtG19AY.440.000006
ORF1ab/nsp31229V1229FGtcTtc99AY.910.006574
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.1760.003954
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.2220.001836
ORF1ab/nsp31229V1229FGtcTtc99B.1.1.2690.012179
ORF1ab/nsp31229V1229FGtcTtc99B.1.5250.001018
ORF1ab/nsp31229V1229FGtcTtc88AY.140.000704
ORF1ab/nsp31229V1229FGtcTtc88AY.230.000558
ORF1ab/nsp31229V1229FGtcTtc88AY.330.000534
ORF1ab/nsp31229V1229FGtcTtc88AY.4.50.00086
ORF1ab/nsp31229V1229FGtcTtc88AY.460.000833
ORF1ab/nsp31229V1229FGtcTtc88B.1.1600.00025
ORF1ab/nsp31229V1229IGtcAtc88B.1.20.00007
ORF1ab/nsp31229V1229VgtCgtT88B.1.3670.006339
ORF1ab/nsp31229V1229FGtcTtc77AY.1000.000322
ORF1ab/nsp31229V1229VgtCgtT77AY.1020.000186
ORF1ab/nsp31229V1229VgtCgtT77AY.1190.000247
ORF1ab/nsp31229V1229IGtcAtc77AY.4.20.000152
ORF1ab/nsp31229V1229FGtcTtc77AY.60.000288
ORF1ab/nsp31229V1229FGtcTtc77B.1.1.700.002387
ORF1ab/nsp31229V1229VgtCgtT77B.1.1770.000092
ORF1ab/nsp31229V1229VgtCgtT77B.1.2210.000497
ORF1ab/nsp31229V1229FGtcTtc77B.1.3510.000208
ORF1ab/nsp31229V1229FGtcTtc77B.1.360.001021
ORF1ab/nsp31229V1229FGtcTtc77B.1.4290.000165
ORF1ab/nsp31229V1229FGtcTtc77B.1.617.10.000903
ORF1ab/nsp31229V1229GgTcgGc66AY.250.000036
ORF1ab/nsp31229V1229IGtcAtc66AY.430.000027
ORF1ab/nsp31229V1229GgTcgGc66B.1.10.000109
ORF1ab/nsp31229V1229LGtcCtc66B.1.1.70.000005
ORF1ab/nsp31229V1229FGtcTtc66B.1.177.600.001311
ORF1ab/nsp31229V1229FGtcTtc66B.1.2210.000426
ORF1ab/nsp31229V1229VgtCgtT66B.1.4270.000303
ORF1ab/nsp31229V1229FGtcTtc55A.2.50.002495
ORF1ab/nsp31229V1229del1Gtc-tc35All0.000001
ORF1ab/nsp31229V1229del1gtCgt-25All0
ORF1ab/nsp31229V1229FGtcTtc55AY.1170.000423
ORF1ab/nsp31229V1229FGtcTtc55AY.290.000079
ORF1ab/nsp31229V1229AgTcgCc55AY.40.000008
ORF1ab/nsp31229V1229FGtcTtc55AY.4.20.000108
ORF1ab/nsp31229V1229FGtcTtc55AY.450.000608
ORF1ab/nsp31229V1229VgtCgtT55AY.740.000578
ORF1ab/nsp31229V1229FGtcTtc55B.1.1.1940.024752
ORF1ab/nsp31229V1229delGTC---55B.1.1.70.000004
ORF1ab/nsp31229V1229VgtCgtT55B.1.5650.004052
ORF1ab/nsp31229V1229IGtcAtc55P.10.000079
ORF1ab/nsp31229V1229FGtcTtc55P.20.000933
ORF1ab/nsp31229V1229FGtcTtc55Q.30.000725
ORF1ab/nsp31229V1229FGtcTtc44A.2.5.30.041237
ORF1ab/nsp31229V1229IGtcAtc44AY.1030.000025
ORF1ab/nsp31229V1229FGtcTtc44AY.300.001583
ORF1ab/nsp31229V1229VgtCgtT44AY.390.000099
ORF1ab/nsp31229V1229IGtcAtc44AY.390.000099
ORF1ab/nsp31229V1229FGtcTtc44AY.480.00186
ORF1ab/nsp31229V1229VgtCgtT44AY.50.000083
ORF1ab/nsp31229V1229FGtcTtc44AY.530.00115
ORF1ab/nsp31229V1229VgtCgtT44AY.750.000224
ORF1ab/nsp31229V1229FGtcTtc44B.1.1.4090.011331
ORF1ab/nsp31229V1229AgTcgCc44B.1.1.70.000004
ORF1ab/nsp31229V1229FGtcTtc44B.1.2400.000862
ORF1ab/nsp31229V1229FGtcTtc44B.1.438.10.000429
ORF1ab/nsp31229V1229VgtCgtT33AY.1000.000138
ORF1ab/nsp31229V1229VgtCgtT33AY.200.000117
ORF1ab/nsp31229V1229FGtcTtc33AY.360.000445
ORF1ab/nsp31229V1229delGTC---33AY.40.000005
ORF1ab/nsp31229V1229FGtcTtc33AY.420.000121
ORF1ab/nsp31229V1229VgtCgtT33AY.420.000121
ORF1ab/nsp31229V1229IGtcAtc33AY.460.000312
ORF1ab/nsp31229V1229VgtCgtT33AY.610.000314
ORF1ab/nsp31229V1229FGtcTtc33AY.640.001786
ORF1ab/nsp31229V1229FGtcTtc33AY.9.20.00011
ORF1ab/nsp31229V1229FGtcTtc33AY.99.20.000276
ORF1ab/nsp31229V1229delGTC---33B.10.000027
ORF1ab/nsp31229V1229delGTC---33B.1.10.000054
ORF1ab/nsp31229V1229LGtcCtc33B.1.10.000054
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.1420.052632
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.2770.002276
ORF1ab/nsp31229V1229FGtcTtc33B.1.1.4160.002715
ORF1ab/nsp31229V1229VgtCgtT33B.1.1600.000094
ORF1ab/nsp31229V1229FGtcTtc33B.1.2060.002447
ORF1ab/nsp31229V1229VgtCgtT33B.1.36.80.003
ORF1ab/nsp31229V1229FGtcTtc33B.1.5960.000261
ORF1ab/nsp31229V1229FGtcTtc33P.1.40.00293
ORF1ab/nsp31229V1229VgtCgtT22A.23.10.001408
ORF1ab/nsp31229V1229IGtcAtc22AY.1000.000092
ORF1ab/nsp31229V1229VgtCgtA22AY.1050.001286
ORF1ab/nsp31229V1229IGtcAtc22AY.1110.000366
ORF1ab/nsp31229V1229FGtcTtc22AY.1130.000285
ORF1ab/nsp31229V1229FGtcTtc22AY.1140.000462
ORF1ab/nsp31229V1229delGTC---22AY.1200.000074
ORF1ab/nsp31229V1229delGTC---22AY.1210.000271
ORF1ab/nsp31229V1229FGtcTtc22AY.160.000759
ORF1ab/nsp31229V1229delGTC---22AY.250.000012
ORF1ab/nsp31229V1229AgTcgCc22AY.260.000057
ORF1ab/nsp31229V1229VgtCgtT22AY.260.000057
ORF1ab/nsp31229V1229FGtcTtc22AY.320.001065
ORF1ab/nsp31229V1229FGtcTtc22AY.39.10.000079
ORF1ab/nsp31229V1229VgtCgtT22AY.430.000009
ORF1ab/nsp31229V1229delGTC---22AY.430.000009
ORF1ab/nsp31229V1229IGtcAtc22AY.50.000041
ORF1ab/nsp31229V1229delGTC---22AY.540.000191
ORF1ab/nsp31229V1229VgtCgtT22AY.540.000191
ORF1ab/nsp31229V1229FGtcTtc22AY.610.00021
ORF1ab/nsp31229V1229FGtcTtc22AY.700.000417
ORF1ab/nsp31229V1229FGtcTtc22AY.710.00095
ORF1ab/nsp31229V1229VgtCgtT22AY.75.10.000361
ORF1ab/nsp31229V1229FGtcTtc22AY.880.001768
ORF1ab/nsp31229V1229VgtCgtT22AY.980.000158
ORF1ab/nsp31229V1229VgtCgtT22AY.99.10.003106
ORF1ab/nsp31229V1229FGtcTtc22B0.000256
ORF1ab/nsp31229V1229AgTcgCc12B.1.10.000018
ORF1ab/nsp31229V1229AgTCgCT12B.1.10.000018
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.1980.002937
ORF1ab/nsp31229V1229GgTcgGc22B.1.1.250.001137
ORF1ab/nsp31229V1229VgtCgtT22B.1.1.250.001137
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.2840.000215
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.2980.001724
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.3180.000604
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.3850.008929
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.4190.014815
ORF1ab/nsp31229V1229FGtcTtc22B.1.1.4300.083333
ORF1ab/nsp31229V1229AgTcgCc22B.1.1770.000026
ORF1ab/nsp31229V1229IGtcAtc22B.1.1770.000026
ORF1ab/nsp31229V1229VgtCgtT22B.1.177.110.003396
ORF1ab/nsp31229V1229VgtCgtA22B.1.2350.005038
ORF1ab/nsp31229V1229VgtCgtT12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtA12B.1.2430.00007
ORF1ab/nsp31229V1229VgtCgtT22B.1.3780.013699
ORF1ab/nsp31229V1229FGtcTtc22B.1.4000.000858
ORF1ab/nsp31229V1229IGtcAtc22B.1.4270.000101
ORF1ab/nsp31229V1229VgtCgtT22B.1.4290.000047
ORF1ab/nsp31229V1229FGtcTtc22B.1.4440.031746
ORF1ab/nsp31229V1229VgtCgtT22B.1.4510.016393
ORF1ab/nsp31229V1229VgtCgtT22B.1.466.20.000782
ORF1ab/nsp31229V1229VgtCgtT22B.1.5260.000047
ORF1ab/nsp31229V1229FGtcTtc22B.1.5490.014388
ORF1ab/nsp31229V1229FGtcTtc22B.1.5580.009132
ORF1ab/nsp31229V1229FGtcTtc22B.1.5650.001621
ORF1ab/nsp31229V1229FGtcTtc22B.1.5750.000607
ORF1ab/nsp31229V1229delGTC---22B.1.617.20.000008
ORF1ab/nsp31229V1229FGtcTtc22B.1.6340.006849
ORF1ab/nsp31229V1229FGtcTtc22B.1.6370.000146
ORF1ab/nsp31229V1229FGtcTtc22C.160.002121
ORF1ab/nsp31229V1229IGtcAtc22C.370.000232
ORF1ab/nsp31229V1229FGtcTtc22N.50.003534
ORF1ab/nsp31229V1229FGtcTtc22P.1.120.000968
ORF1ab/nsp31229V1229FGtcTtc22P.1.20.002312
ORF1ab/nsp31229V1229VgtCgtT22Q.80.00033
ORF1ab/nsp31229V1229LGtcCtc22W.10.017391
ORF1ab/nsp31229V1229VgtCgtT11A.10.000282
ORF1ab/nsp31229V1229VgtCgtT11A.20.000662
ORF1ab/nsp31229V1229del2gTCg--11All0
ORF1ab/nsp31229V1229PGTCCCT11All0
ORF1ab/nsp31229V1229DgTcgAc11All0
ORF1ab/nsp31229V1229VgtCgtT11AU.30.00211
ORF1ab/nsp31229V1229IGtcAtc11AY.100.00053
ORF1ab/nsp31229V1229delGTC---11AY.1000.000046
ORF1ab/nsp31229V1229delGTC---11AY.1010.00049
ORF1ab/nsp31229V1229FGtcTtc11AY.1050.000643
ORF1ab/nsp31229V1229VgtCgtT11AY.1110.000183
ORF1ab/nsp31229V1229VgtCgtT11AY.1130.000142
ORF1ab/nsp31229V1229FGtcTtc11AY.1160.000287
ORF1ab/nsp31229V1229FGtcTtc11AY.116.10.000311
ORF1ab/nsp31229V1229VgtCgtT11AY.1170.000085
ORF1ab/nsp31229V1229FGtcTtc11AY.120.000316
ORF1ab/nsp31229V1229FGtcTtc11AY.130.000161
ORF1ab/nsp31229V1229VgtCgtA11AY.130.000161
ORF1ab/nsp31229V1229LGtcCtc11AY.140.000088
ORF1ab/nsp31229V1229VgtCgtT11AY.140.000088
ORF1ab/nsp31229V1229FGtcTtc11AY.210.001898
ORF1ab/nsp31229V1229delGTC---11AY.230.00007
ORF1ab/nsp31229V1229LGtcCtc11AY.250.000006
ORF1ab/nsp31229V1229IGtcAtc11AY.250.000006
ORF1ab/nsp31229V1229VgtCgtT11AY.290.000016
ORF1ab/nsp31229V1229AgTcgCc11AY.30.00001
ORF1ab/nsp31229V1229IGtcAtc11AY.30.00001
ORF1ab/nsp31229V1229delGTC---11AY.30.00001
ORF1ab/nsp31229V1229VgtCgtT11AY.3.10.000085
ORF1ab/nsp31229V1229VgtCgtT11AY.330.000067
ORF1ab/nsp31229V1229delGTC---11AY.330.000067
ORF1ab/nsp31229V1229IGtcAtc11AY.340.000097
ORF1ab/nsp31229V1229FGtcTtc11AY.34.10.00051
ORF1ab/nsp31229V1229VgtCgtA11AY.34.10.00051
ORF1ab/nsp31229V1229FGtcTtc11AY.380.000499
ORF1ab/nsp31229V1229LGtcCtc11AY.390.000025
ORF1ab/nsp31229V1229delGTC---11AY.390.000025
ORF1ab/nsp31229V1229VgtCgtT11AY.39.10.00004
ORF1ab/nsp31229V1229del2gTCg--11AY.40.000002
ORF1ab/nsp31229V1229VgtCgtT11AY.4.20.000022
ORF1ab/nsp31229V1229AgTcgCc11AY.4.30.000842
ORF1ab/nsp31229V1229FGtcTtc11AY.410.000294
ORF1ab/nsp31229V1229LGtcCtc11AY.430.000004
ORF1ab/nsp31229V1229IGtcAtc11AY.440.000006
ORF1ab/nsp31229V1229delGTC---11AY.450.000122
ORF1ab/nsp31229V1229IGtcAtc11AY.450.000122
ORF1ab/nsp31229V1229VgtCgtT11AY.460.000104
ORF1ab/nsp31229V1229delGTC---11AY.460.000104
ORF1ab/nsp31229V1229FGtcTtc11AY.46.40.000165
ORF1ab/nsp31229V1229delGTC---11AY.46.50.000198
ORF1ab/nsp31229V1229AgTcgCc11AY.46.60.000072
ORF1ab/nsp31229V1229VgtCgtT11AY.470.000031
ORF1ab/nsp31229V1229FGtcTtc11AY.470.000031
ORF1ab/nsp31229V1229VgtCgtT11AY.5.40.000277
ORF1ab/nsp31229V1229VgtCgtA11AY.520.000814
ORF1ab/nsp31229V1229IGtcAtc11AY.540.000095
ORF1ab/nsp31229V1229FGtcTtc11AY.550.000917
ORF1ab/nsp31229V1229IGtcAtc11AY.570.000656
ORF1ab/nsp31229V1229IGtcAtc11AY.580.000907
ORF1ab/nsp31229V1229FGtcTtc11AY.600.000938
ORF1ab/nsp31229V1229IGtcAtc11AY.650.000533
ORF1ab/nsp31229V1229FGtcTtc11AY.650.000533
ORF1ab/nsp31229V1229delGTC---11AY.660.00107
ORF1ab/nsp31229V1229FGtcTtc11AY.670.000464
ORF1ab/nsp31229V1229VgtCgtT11AY.690.000187
ORF1ab/nsp31229V1229FGtcTtc11AY.7.20.000559
ORF1ab/nsp31229V1229VgtCgtT11AY.710.000475
ORF1ab/nsp31229V1229del1gtCgt-11AY.710.000475
ORF1ab/nsp31229V1229FGtcTtc11AY.740.000116
ORF1ab/nsp31229V1229DgTcgAc11AY.740.000116
ORF1ab/nsp31229V1229IGtcAtc11AY.840.000437
ORF1ab/nsp31229V1229VgtCgtT11AY.880.000884
ORF1ab/nsp31229V1229VgtCgtT11AY.90.000068
ORF1ab/nsp31229V1229LGtcCtc11AY.90.000068
ORF1ab/nsp31229V1229AgTcgCc11AY.9.10.000084
ORF1ab/nsp31229V1229FGtcTtc11AY.9.10.000084
ORF1ab/nsp31229V1229VgtCgtT11AY.9.20.000037
ORF1ab/nsp31229V1229VgtCgtT11AY.920.000287
ORF1ab/nsp31229V1229FGtcTtc11AY.930.000273
ORF1ab/nsp31229V1229IGtcAtc11AY.980.000079
ORF1ab/nsp31229V1229FGtcTtc11AY.98.10.000048
ORF1ab/nsp31229V1229delGTC---11AY.990.001049
ORF1ab/nsp31229V1229FGtcTtc11AZ.20.000821
ORF1ab/nsp31229V1229VgtCgtT11B0.000128
ORF1ab/nsp31229V1229del1Gtc-tc11B.10.000009
ORF1ab/nsp31229V1229AgTcgCc11B.10.000009
ORF1ab/nsp31229V1229IGtcAtc11B.1.10.000018
ORF1ab/nsp31229V1229LGtcCtc11B.1.1.10.000327
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.1170.009709
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1220.045455
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1370.0125
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1450.037037
ORF1ab/nsp31229V1229delGTC---11B.1.1.1590.004673
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.1710.003676
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.1890.001513
ORF1ab/nsp31229V1229AgTcgCc11B.1.1.2050.003717
ORF1ab/nsp31229V1229delGTC---11B.1.1.2140.000055
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.2540.011236
ORF1ab/nsp31229V1229VgtCgtG11B.1.1.2630.001558
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.280.000311
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.2990.012195
ORF1ab/nsp31229V1229delGTC---11B.1.1.3040.002809
ORF1ab/nsp31229V1229IGtcAtc11B.1.1.3170.000412
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3180.000302
ORF1ab/nsp31229V1229AgTcgCc11B.1.1.3260.001761
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3260.001761
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.330.000421
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.330.000421
ORF1ab/nsp31229V1229delGTC---11B.1.1.3480.000796
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3690.000446
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.370.000193
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.3810.04
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3880.045455
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.390.00051
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3970.002252
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.3980.003226
ORF1ab/nsp31229V1229VgtCgtA11B.1.1.4040.015873
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.4070.041667
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.4340.000349
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.630.000386
ORF1ab/nsp31229V1229VgtCgtT11B.1.1.700.000341
ORF1ab/nsp31229V1229FGtcTtc11B.1.1.890.006061
ORF1ab/nsp31229V1229FGtcTtc11B.1.1110.001175
ORF1ab/nsp31229V1229VgtCgtT11B.1.160.140.002119
ORF1ab/nsp31229V1229FGtcTtc11B.1.177.240.001295
ORF1ab/nsp31229V1229delGTC---11B.1.177.350.000691
ORF1ab/nsp31229V1229FGtcTtc11B.1.177.40.000211
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.510.004566
ORF1ab/nsp31229V1229delGTC---11B.1.177.620.001192
ORF1ab/nsp31229V1229VgtCgtT11B.1.177.690.001484
ORF1ab/nsp31229V1229delGTC---11B.1.177.830.001481
ORF1ab/nsp31229V1229VgtCgtT11B.1.1950.005025
ORF1ab/nsp31229V1229del1gtCgt-11B.1.20.000009
ORF1ab/nsp31229V1229delGTC---11B.1.20.000009
ORF1ab/nsp31229V1229FGtcTtc11B.1.214.20.0006
ORF1ab/nsp31229V1229FGtcTtc11B.1.2340.000132
ORF1ab/nsp31229V1229VgtCgtA11B.1.2580.000067
ORF1ab/nsp31229V1229del1Gtc-tc11B.1.258.140.00098
ORF1ab/nsp31229V1229FGtcTtc11B.1.258.140.00098
ORF1ab/nsp31229V1229FGtcTtc11B.1.258.170.000104
ORF1ab/nsp31229V1229AgTcgCc11B.1.3110.000275
ORF1ab/nsp31229V1229VgtCgtT11B.1.3190.003049
ORF1ab/nsp31229V1229VgtCgtT11B.1.3250.006897
ORF1ab/nsp31229V1229FGtcTtc11B.1.3490.000715
ORF1ab/nsp31229V1229FGtcTtc11B.1.350.008475
ORF1ab/nsp31229V1229VgtCgtA11B.1.351.30.000876
ORF1ab/nsp31229V1229AgTcgCc11B.1.36.10.00114
ORF1ab/nsp31229V1229IGtcAtc11B.1.36.220.001208
ORF1ab/nsp31229V1229FGtcTtc11B.1.36.270.000763
ORF1ab/nsp31229V1229FGtcTtc11B.1.3670.000792
ORF1ab/nsp31229V1229VgtCgtT11B.1.3690.000285
ORF1ab/nsp31229V1229IGtcAtc11B.1.3690.000285
ORF1ab/nsp31229V1229VgtCgtT11B.1.4250.002994
ORF1ab/nsp31229V1229AgTcgCc11B.1.4270.00005
ORF1ab/nsp31229V1229delGTC---11B.1.428.20.033333
ORF1ab/nsp31229V1229AgTcgCc11B.1.4290.000024
ORF1ab/nsp31229V1229FGtcTtc11B.1.4360.001029
ORF1ab/nsp31229V1229IGtcAtc11B.1.4560.003268
ORF1ab/nsp31229V1229IGtcAtc11B.1.4590.004082
ORF1ab/nsp31229V1229FGtcTtc11B.1.4680.005714
ORF1ab/nsp31229V1229FGtcTtc11B.1.4700.001404
ORF1ab/nsp31229V1229VgtCgtT11B.1.5090.000866
ORF1ab/nsp31229V1229VgtCgtT11B.1.5250.000113
ORF1ab/nsp31229V1229VgtCgtT11B.1.5460.003704
ORF1ab/nsp31229V1229del1Gtc-tc11B.1.5460.003704
ORF1ab/nsp31229V1229VgtCgtT11B.1.5510.00129
ORF1ab/nsp31229V1229VgtCgtA11B.1.5600.00463
ORF1ab/nsp31229V1229FGtcTtc11B.1.5640.000426
ORF1ab/nsp31229V1229VgtCgtT11B.1.5750.000303
ORF1ab/nsp31229V1229FGtcTtc11B.1.5820.000491
ORF1ab/nsp31229V1229AgTcgCc11B.1.5960.000087
ORF1ab/nsp31229V1229VgtCgtT11B.1.5960.000087
ORF1ab/nsp31229V1229AgTcgCc11B.1.617.20.000004
ORF1ab/nsp31229V1229FGtcTtc11B.1.6200.000946
ORF1ab/nsp31229V1229IGtcAtc11B.1.6210.000089
ORF1ab/nsp31229V1229FGtcTtc11B.1.6210.000089
ORF1ab/nsp31229V1229VgtCgtA11B.1.6230.000536
ORF1ab/nsp31229V1229delGTC---11B.1.6300.005236
ORF1ab/nsp31229V1229FGtcTtc11B.1.690.035714
ORF1ab/nsp31229V1229FGtcTtc11B.1.9.50.005682
ORF1ab/nsp31229V1229LGtcCtc11B.290.003509
ORF1ab/nsp31229V1229FGtcTtc11B.400.000364
ORF1ab/nsp31229V1229FGtcTtc11B.450.003831
ORF1ab/nsp31229V1229delGTC---11C.20.016129
ORF1ab/nsp31229V1229PGTCCCT11C.350.000774
ORF1ab/nsp31229V1229FGtcTtc11C.360.000911
ORF1ab/nsp31229V1229FGtcTtc11C.370.000116
ORF1ab/nsp31229V1229VgtCgtT11D.20.000075
ORF1ab/nsp31229V1229VgtCgtT11N.50.001767
ORF1ab/nsp31229V1229delGTC---11P.10.000016
ORF1ab/nsp31229V1229VgtCgtA11P.20.000187
ORF1ab/nsp31229V1229VgtCgtT11P.30.001595
ORF1ab/nsp31229V1229FGtcTtc11Q.70.001111
ORF1ab/nsp31229V1229FGtcTtc11Q.80.000165
ORF1ab/nsp31229V1229LGtcCtc11Q.80.000165
ORF1ab/nsp31229V1229VgtCgtT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.