CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1228 | P1228L | P2046L | nonsyn | cCa | cTa | 2412989 | 2409735 | 0.998651 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228L | P2046L | nonsyn | CCa | TTa | 2412989 | 3142 | 0.00130212 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228L | P2046L | nonsyn | cCA | cTG | 2412989 | 78 | 0.0000323251 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228L | P2046L | nonsyn | cCA | cTT | 2412989 | 34 | 0.0000140904 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228S | P2046S | nonsyn | Cca | Tca | 4365 | 4365 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228R | P2046R | nonsyn | cCa | cGa | 410 | 410 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228P | P2046P | syn | ccA | ccT | 235 | 125 | 0.531915 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228P | P2046P | syn | ccA | ccG | 235 | 97 | 0.412766 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228P | P2046P | syn | ccA | ccC | 235 | 13 | 0.0553191 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228T | P2046T | nonsyn | Cca | Aca | 128 | 127 | 0.992188 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228T | P2046T | nonsyn | CcA | AcT | 128 | 1 | 0.0078125 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228del | P2046del | del | CCA | --- | 92 | 92 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228I | P2046I | nonsyn | CCa | ATa | 39 | 39 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228Q | P2046Q | nonsyn | cCa | cAa | 27 | 27 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228A | P2046A | nonsyn | Cca | Gca | 23 | 23 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228del2 | P2046del2 | del | CCa | --a | 22 | 22 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228del1 | P2046del1 | del | ccA | cc- | 4 | 4 | 1 | 6401-6403 |
ORF1ab/nsp3 | 1228 | P1228E | P2046E | nonsyn | CCa | GAa | 1 | 1 | 1 | 6401-6403 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2409735 | 2412989 | All | 0.46089 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 3142 | 2412989 | All | 0.000601 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 78 | 2412989 | All | 0.000015 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 34 | 2412989 | All | 0.000007 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 633197 | 633680 | AY.4 | 0.985522 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 468 | 633680 | AY.4 | 0.000728 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 13 | 633680 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 2 | 633680 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 222913 | 223273 | B.1.617.2 | 0.83936 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 351 | 223273 | B.1.617.2 | 0.001322 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 8 | 223273 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 1 | 223273 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 220276 | 220436 | AY.43 | 0.975925 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 114 | 220436 | AY.43 | 0.000505 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 35 | 220436 | AY.43 | 0.000155 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 11 | 220436 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 164573 | 164693 | AY.25 | 0.989877 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 119 | 164693 | AY.25 | 0.000716 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 1 | 164693 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 160682 | 161210 | AY.44 | 0.978033 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 526 | 161210 | AY.44 | 0.003202 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 1 | 161210 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 1 | 161210 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 159154 | 159439 | AY.103 | 0.988197 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 266 | 159439 | AY.103 | 0.001652 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 19 | 159439 | AY.103 | 0.000118 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 99459 | 99544 | AY.3 | 0.989258 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 83 | 99544 | AY.3 | 0.000826 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 2 | 99544 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 63347 | 63368 | AY.29 | 0.999211 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 21 | 63368 | AY.29 | 0.000331 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 47695 | 47848 | AY.5 | 0.984864 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 153 | 47848 | AY.5 | 0.003159 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 44716 | 44944 | AY.4.2 | 0.969831 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 226 | 44944 | AY.4.2 | 0.004902 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 2 | 44944 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 39690 | 39761 | AY.39 | 0.980799 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 69 | 39761 | AY.39 | 0.001705 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 2 | 39761 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 37548 | 37592 | AY.102 | 0.995546 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 44 | 37592 | AY.102 | 0.001167 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 27790 | 28033 | AY.119 | 0.981216 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 243 | 28033 | AY.119 | 0.00858 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 26520 | 26530 | AY.120 | 0.985984 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 26530 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 4 | 26530 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 1 | 26530 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 25438 | 25467 | AY.20 | 0.988651 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 29 | 25467 | AY.20 | 0.001127 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 24599 | 24609 | AY.39.1 | 0.974449 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 10 | 24609 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 24561 | 24566 | AY.42 | 0.988092 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 24566 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 24016 | 24024 | AY.6 | 0.987744 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 24024 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 2 | 24024 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 1 | 24024 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 21576 | 21588 | AY.100 | 0.992639 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 11 | 21588 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 1 | 21588 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 20344 | 20368 | AY.98.1 | 0.985277 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 24 | 20368 | AY.98.1 | 0.001162 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 15753 | 15757 | AY.118 | 0.986906 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 4 | 15757 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 14736 | 14748 | AY.33 | 0.98404 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 12 | 14748 | AY.33 | 0.000801 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13954 | 13957 | AY.23 | 0.973286 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 3 | 13957 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13752 | 13753 | AY.46.6 | 0.992996 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 13753 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 12249 | 12250 | AY.98 | 0.967612 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 12250 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11666 | 11666 | AY.3.1 | 0.994629 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11570 | 11579 | AY.117 | 0.977857 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 9 | 11579 | AY.117 | 0.000761 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 10799 | 10804 | AY.99.2 | 0.995208 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 10804 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 10204 | 10204 | AY.34 | 0.989431 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 9352 | 9357 | AY.46 | 0.973356 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 9357 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 9246 | 9260 | AY.4.5 | 0.993873 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 14 | 9260 | AY.4.5 | 0.001505 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 8835 | 8835 | AY.7.1 | 0.995717 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7730 | 7802 | AY.45 | 0.940618 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 72 | 7802 | AY.45 | 0.008761 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7303 | 7304 | AY.121 | 0.988227 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 7304 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6863 | 6868 | AY.113 | 0.977218 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 6868 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6669 | 6676 | AY.36 | 0.988439 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 7 | 6676 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6490 | 6493 | AY.4.2.1 | 0.966925 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 3 | 6493 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6030 | 6033 | AY.46.4 | 0.991939 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 3 | 6033 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5472 | 5472 | AY.110 | 0.616633 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5364 | 5378 | AY.111 | 0.982418 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 14 | 5378 | AY.111 | 0.002564 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5064 | 5066 | AY.7 | 0.992552 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 5066 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4947 | 4948 | AY.46.5 | 0.981548 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 4948 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4535 | 4535 | AY.29.1 | 1 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4365 | 4365 | All | 0.000835 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4263 | 4264 | AY.114 | 0.985209 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 4264 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3583 | 3589 | AY.93 | 0.978427 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 5 | 3589 | AY.93 | 0.001365 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 1 | 3589 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3468 | 3470 | AY.5.4 | 0.959602 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 3470 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3372 | 3372 | AY.41 | 0.991182 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3342 | 3370 | AY.116 | 0.958417 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 28 | 3370 | AY.116 | 0.00803 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3317 | 3317 | AY.9.2 | 0.121832 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3294 | 3296 | AY.92 | 0.94628 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 3296 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3179 | 3180 | AY.116.1 | 0.990034 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 3180 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3130 | 3141 | AY.12 | 0.989254 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 11 | 3141 | AY.12 | 0.003477 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3085 | 3089 | AY.120.1 | 0.990369 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 4 | 3089 | AY.120.1 | 0.001284 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2945 | 2946 | AY.106 | 0.986269 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 2946 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2883 | 2884 | AY.5.3 | 0.972672 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 2884 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2484 | 2488 | AY.1 | 0.982984 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 4 | 2488 | AY.1 | 0.001583 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2426 | 2426 | AY.4.4 | 0.992635 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2396 | 2396 | AY.23.1 | 1 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2302 | 2302 | AY.85 | 0.98334 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2256 | 2256 | AY.94 | 0.998672 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2232 | 2233 | AY.84 | 0.976378 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 2233 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2130 | 2130 | AY.107 | 0.992544 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2020 | 2020 | AY.101 | 0.990682 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1906 | 2002 | AY.120.2.1 | 0.949676 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 96 | 2002 | AY.120.2.1 | 0.047833 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1995 | 1995 | B.1.1.7 | 0.001786 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1944 | 1944 | AY.34.1 | 0.991331 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1800 | 1821 | AY.32 | 0.958466 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 21 | 1821 | AY.32 | 0.011182 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1774 | 1774 | AY.7.2 | 0.99217 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1742 | 1742 | B.1.1.7 | 0.001559 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1465 | 1465 | AY.46.2 | 0.93075 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1458 | 1459 | AY.105 | 0.937621 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTG | 1 | 1459 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1433 | 1435 | AY.90 | 0.980835 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 1435 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1374 | 1374 | AY.39.1.1 | 0.995652 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1349 | 1349 | AY.4.1 | 0.994838 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1306 | 1306 | AY.109 | 0.965976 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1301 | 1301 | AY.91 | 0.950329 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1268 | 1270 | AY.95 | 0.964992 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 2 | 1270 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1172 | 1173 | AY.87 | 0.975853 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 1173 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1169 | 1169 | AY.4.3 | 0.984007 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1141 | 1142 | AY.86 | 0.946888 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 1142 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1131 | 1131 | B.1.351.3 | 0.991236 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1077 | 1077 | AY.88 | 0.952255 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1066 | 1066 | AY.46.3 | 0.995331 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1009 | 1013 | AY.47 | 0.031385 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 4 | 1013 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 953 | 954 | AY.46.1 | 0.978439 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 954 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 946 | 948 | B.1 | 0.008665 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 948 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 935 | 937 | AY.99 | 0.981112 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 937 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 880 | 880 | AY.80 | 0.993228 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 867 | 869 | AY.75 | 0.048571 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 869 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 836 | 837 | AY.77 | 0.942503 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 837 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 808 | 809 | AY.79 | 0.978208 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 809 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 755 | 755 | AY.108 | 0.832415 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 712 | 712 | AY.120.2 | 0.915167 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 700 | 701 | AY.82 | 0.949796 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 701 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 648 | 649 | AY.39.2 | 0.998459 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 649 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 638 | 638 | AY.99.1 | 0.990683 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 626 | 626 | B.1.2 | 0.005512 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 614 | 614 | AY.73 | 0.408516 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 610 | 610 | AY.78 | 0.939908 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 610 | 610 | B.1.362 | 0.939908 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 582 | 582 | AY.97 | 0.989796 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 574 | 574 | AY.83 | 0.989655 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 555 | 557 | B | 0.070936 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 557 | B | 0.000256 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 499 | 499 | AY.104 | 0.990079 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 492 | 492 | AY.68 | 0.134684 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 491 | 491 | L.1 | 0.935238 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 482 | 482 | AY.81 | 0.960159 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 472 | 472 | AY.21 | 0.895636 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 467 | 467 | AY.22 | 0.976987 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 459 | 459 | AY.96 | 0.952282 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 453 | 453 | AY.55 | 0.415596 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 410 | 410 | All | 0.000078 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 404 | 404 | B.1.625 | 0.950588 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 396 | 397 | AY.5.2 | 0.975369 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 397 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 381 | 381 | AY.74 | 0.044062 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 374 | 374 | B.1.1.7 | 0.000335 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 350 | 350 | AY.54 | 0.033371 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 329 | 329 | B.1.1.255 | 0.99697 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 314 | 316 | P.1 | 0.004947 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 316 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 300 | 300 | AY.26 | 0.008493 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 295 | 295 | AY.58 | 0.267695 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 293 | 293 | AY.59 | 0.155191 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 278 | 278 | AY.19 | 0.31699 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 266 | 266 | AY.5.1 | 1 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 247 | 247 | AY.75.1 | 0.044537 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 245 | 245 | AY.91.1 | 0.995935 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 125 | 235 | All | 0.000024 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 97 | 235 | All | 0.000019 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 13 | 235 | All | 0.000002 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 232 | 233 | AY.53 | 0.066705 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 233 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 212 | 212 | B.1.2 | 0.001867 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 212 | 212 | B.1.362.2 | 1 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 202 | 203 | AY.76 | 0.975845 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 203 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 201 | 201 | AY.89 | 0.985294 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 199 | 199 | B.1 | 0.001823 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 193 | 193 | AY.52 | 0.157166 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 189 | 189 | AY.115 | 0.984375 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 182 | 182 | AY.62 | 0.079303 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 182 | 182 | AY.69 | 0.033974 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 176 | 176 | AY.64 | 0.104762 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 158 | 158 | AY.10 | 0.083731 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 155 | 156 | AY.67 | 0.071959 |
ORF1ab/nsp3 | 1228 | P1228L | cCA | cTT | 1 | 156 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 150 | 150 | AY.37 | 0.047408 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 149 | 149 | AY.56 | 0.239165 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 148 | 148 | AY.38 | 0.073889 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 147 | 147 | B.1.1 | 0.002667 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 130 | 130 | AY.63 | 0.05029 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 127 | 128 | All | 0.000024 |
ORF1ab/nsp3 | 1228 | P1228T | CcA | AcT | 1 | 128 | All | 0 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 128 | 128 | AY.16 | 0.048595 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 119 | 119 | AY.14 | 0.010474 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 119 | 119 | B.1.595 | 0.031054 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 114 | 114 | B.1.258 | 0.007586 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 104 | 104 | AY.13 | 0.016742 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 104 | 104 | AY.57 | 0.068241 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 98 | 98 | AY.40 | 0.094503 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 95 | 95 | B.1.177 | 0.001251 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 92 | 92 | All | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 89 | 90 | AY.48 | 0.041395 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 90 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 58 | 88 | B.1.1.7 | 0.000052 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 21 | 88 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 9 | 88 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 87 | 87 | B.1.351 | 0.002586 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 85 | 85 | AY.70 | 0.017723 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 83 | 83 | AY.35 | 0.019343 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 80 | 80 | AY.61 | 0.008382 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 74 | 74 | B.1.429 | 0.001741 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 69 | 69 | C.36.3 | 0.039138 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 65 | 65 | AY.71 | 0.030879 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 63 | 63 | AY.65 | 0.033582 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 63 | 63 | B.1.525 | 0.007129 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 62 | 62 | AY.60 | 0.058161 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 62 | 62 | B.1.526 | 0.001457 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 60 | 60 | B.1.273 | 0.779221 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 58 | 59 | P.1 | 0.000914 |
ORF1ab/nsp3 | 1228 | P1228T | CcA | AcT | 1 | 59 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 58 | 58 | B.1.351.2 | 0.017549 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 58 | 58 | P.1 | 0.000914 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 56 | 56 | B.1.1.28 | 0.017429 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 55 | 55 | B.1.258 | 0.00366 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 53 | 54 | AY.11 | 0.07095 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 1 | 54 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 53 | 53 | B.1.160 | 0.001653 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 41 | 48 | B.1.2 | 0.000361 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 7 | 48 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 44 | 44 | B.1.1 | 0.000798 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 43 | 43 | B.1.177 | 0.000566 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 41 | 41 | B.1.427 | 0.00207 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 40 | 40 | AY.26 | 0.001132 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 40 | 40 | B.1.526 | 0.00094 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 39 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 37 | 37 | AY.49 | 0.118211 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 37 | 37 | AY.50 | 0.029576 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 37 | 37 | B.1.1.70 | 0.012619 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 35 | 35 | AY.64 | 0.020833 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 34 | 34 | AY.30 | 0.013455 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 31 | 31 | AY.24 | 0.013362 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 31 | 31 | B.1.1.519 | 0.001231 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 31 | 31 | B.1.242 | 0.584906 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 30 | 30 | B.1.439 | 0.177515 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 29 | 29 | B.1.438.1 | 0.003111 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 28 | 28 | B.1.170 | 0.12069 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 27 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 27 | 27 | AY.9 | 0.001825 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 27 | 27 | B.1.609 | 0.012943 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 25 | 25 | B.1.429 | 0.000588 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 23 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 23 | 23 | C.35 | 0.017802 |
ORF1ab/nsp3 | 1228 | P1228del2 | CCa | --a | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 22 | 22 | AY.51 | 0.02 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 22 | 22 | P.1.7 | 0.007024 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 21 | 21 | AY.28 | 0.039698 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 21 | 21 | B.1.36 | 0.003064 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp3 | 1228 | P1228del2 | CCa | --a | 20 | 20 | AY.46.5 | 0.003968 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 20 | 20 | B.1.1.98 | 0.37037 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 20 | 20 | B.1.177.75 | 0.020812 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 20 | 20 | B.1.621 | 0.00177 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 19 | 19 | B.1.1.318 | 0.005733 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 18 | 18 | B.1.177.19 | 0.025751 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 18 | 18 | B.1.621.1 | 0.009105 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 17 | 17 | B.1.617.1 | 0.002192 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 16 | 16 | AY.8 | 0.009697 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 16 | 16 | B.1.1.153 | 0.017525 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 15 | 15 | B.1.362.1 | 1 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 15 | 15 | P.1.7 | 0.004789 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 13 | 13 | AH.3 | 0.04943 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13 | 13 | AY.66 | 0.013904 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13 | 13 | B.1.1.44 | 0.031325 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13 | 13 | B.1.1.526 | 0.046099 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 13 | 13 | B.1.517 | 0.005551 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 12 | 12 | B.1.1.445 | 0.444444 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 12 | 12 | B.1.258.17 | 0.001248 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 12 | 12 | B.1.628 | 0.004228 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11 | 11 | A.2 | 0.00728 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11 | 11 | AY.72 | 0.014966 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11 | 11 | B.1.576 | 0.009973 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 10 | 10 | AY.16.1 | 0.004699 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 10 | 10 | B.1.436 | 0.010288 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 9 | 9 | B.1.1.25 | 0.005117 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 9 | 9 | B.1.428 | 0.009184 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 9 | 9 | B.1.561 | 0.003573 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 9 | 9 | Q.8 | 0.001484 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 5 | 8 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 3 | 8 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 8 | 8 | B.40 | 0.002914 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 7 | 7 | B.1.1.265 | 0.022082 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7 | 7 | B.1.349 | 0.005004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.1.170 | 0.007481 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.1.432 | 0.007595 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.36.8 | 0.006 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | A | 0.001935 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | A.21 | 0.01385 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | A.27 | 0.008278 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.1.138 | 0.030303 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.128 | 0.003177 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.276 | 0.084746 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.420 | 0.052083 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.474 | 0.009506 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | B.1.565 | 0.004052 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | B.1.619.1 | 0.003207 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1228 | P1228del1 | ccA | cc- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.192 | 0.009238 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.220 | 0.007435 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.1.48 | 0.011494 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.177.87 | 0.002911 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.214 | 0.014652 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 4 | 4 | B.1.617.3 | 0.01194 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | P.1.13 | 0.003594 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | AY.15 | 0.006667 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | AZ.5 | 0.010526 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.121 | 0.007282 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.413 | 0.02069 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 2 | 3 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 3 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.160.22 | 0.02027 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | B.1.195 | 0.015075 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.208 | 0.12 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.335 | 0.030928 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.600 | 0.017544 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.604 | 0.051724 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | B.55 | 0.00885 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | N.6 | 0.021277 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1228 | P1228del1 | ccA | cc- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.175 | 0.153846 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.1.72 | 0.060606 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.13 | 0.004751 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.380 | 0.013245 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.413 | 0.008511 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.549 | 0.014388 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1228 | P1228L | CCa | TTa | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.70 | 0.04878 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp3 | 1228 | P1228R | cCa | cGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | A.15 | 0.015873 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1228 | P1228E | CCa | GAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.382 | 0.035714 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccC | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1228 | P1228del1 | ccA | cc- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.476 | 0.1 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp3 | 1228 | P1228del1 | ccA | cc- | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228I | CCa | ATa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228del2 | CCa | --a | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1228 | P1228Q | cCa | cAa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1228 | P1228del2 | CCa | --a | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp3 | 1228 | P1228E | CCa | GAa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | C.9 | 0.030303 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1228 | P1228del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1228 | P1228A | Cca | Gca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1228 | P1228T | Cca | Aca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1228 | P1228S | Cca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1228 | P1228L | cCa | cTa | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1228 | P1228P | ccA | ccG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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