CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31228P1228LP2046LnonsyncCacTa241298924097350.9986516401-6403
ORF1ab/nsp31228P1228LP2046LnonsynCCaTTa241298931420.001302126401-6403
ORF1ab/nsp31228P1228LP2046LnonsyncCAcTG2412989780.00003232516401-6403
ORF1ab/nsp31228P1228LP2046LnonsyncCAcTT2412989340.00001409046401-6403
ORF1ab/nsp31228P1228SP2046SnonsynCcaTca4365436516401-6403
ORF1ab/nsp31228P1228RP2046RnonsyncCacGa41041016401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccT2351250.5319156401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccG235970.4127666401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccC235130.05531916401-6403
ORF1ab/nsp31228P1228TP2046TnonsynCcaAca1281270.9921886401-6403
ORF1ab/nsp31228P1228TP2046TnonsynCcAAcT12810.00781256401-6403
ORF1ab/nsp31228P1228delP2046deldelCCA---929216401-6403
ORF1ab/nsp31228P1228IP2046InonsynCCaATa393916401-6403
ORF1ab/nsp31228P1228QP2046QnonsyncCacAa272716401-6403
ORF1ab/nsp31228P1228AP2046AnonsynCcaGca232316401-6403
ORF1ab/nsp31228P1228del2P2046del2delCCa--a222216401-6403
ORF1ab/nsp31228P1228del1P2046del1delccAcc-4416401-6403
ORF1ab/nsp31228P1228EP2046EnonsynCCaGAa1116401-6403

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31228P1228LcCacTa24097352412989All0.46089
ORF1ab/nsp31228P1228LCCaTTa31422412989All0.000601
ORF1ab/nsp31228P1228LcCAcTG782412989All0.000015
ORF1ab/nsp31228P1228LcCAcTT342412989All0.000007
ORF1ab/nsp31228P1228LcCacTa633197633680AY.40.985522
ORF1ab/nsp31228P1228LCCaTTa468633680AY.40.000728
ORF1ab/nsp31228P1228LcCAcTG13633680AY.40.00002
ORF1ab/nsp31228P1228LcCAcTT2633680AY.40.000003
ORF1ab/nsp31228P1228LcCacTa222913223273B.1.617.20.83936
ORF1ab/nsp31228P1228LCCaTTa351223273B.1.617.20.001322
ORF1ab/nsp31228P1228LcCAcTT8223273B.1.617.20.00003
ORF1ab/nsp31228P1228LcCAcTG1223273B.1.617.20.000004
ORF1ab/nsp31228P1228LcCacTa220276220436AY.430.975925
ORF1ab/nsp31228P1228LCCaTTa114220436AY.430.000505
ORF1ab/nsp31228P1228LcCAcTG35220436AY.430.000155
ORF1ab/nsp31228P1228LcCAcTT11220436AY.430.000049
ORF1ab/nsp31228P1228LcCacTa164573164693AY.250.989877
ORF1ab/nsp31228P1228LCCaTTa119164693AY.250.000716
ORF1ab/nsp31228P1228LcCAcTT1164693AY.250.000006
ORF1ab/nsp31228P1228LcCacTa160682161210AY.440.978033
ORF1ab/nsp31228P1228LCCaTTa526161210AY.440.003202
ORF1ab/nsp31228P1228LcCAcTG1161210AY.440.000006
ORF1ab/nsp31228P1228LcCAcTT1161210AY.440.000006
ORF1ab/nsp31228P1228LcCacTa159154159439AY.1030.988197
ORF1ab/nsp31228P1228LCCaTTa266159439AY.1030.001652
ORF1ab/nsp31228P1228LcCAcTG19159439AY.1030.000118
ORF1ab/nsp31228P1228LcCacTa9945999544AY.30.989258
ORF1ab/nsp31228P1228LCCaTTa8399544AY.30.000826
ORF1ab/nsp31228P1228LcCAcTT299544AY.30.00002
ORF1ab/nsp31228P1228LcCacTa6334763368AY.290.999211
ORF1ab/nsp31228P1228LCCaTTa2163368AY.290.000331
ORF1ab/nsp31228P1228LcCacTa4769547848AY.50.984864
ORF1ab/nsp31228P1228LCCaTTa15347848AY.50.003159
ORF1ab/nsp31228P1228LcCacTa4471644944AY.4.20.969831
ORF1ab/nsp31228P1228LCCaTTa22644944AY.4.20.004902
ORF1ab/nsp31228P1228LcCAcTG244944AY.4.20.000043
ORF1ab/nsp31228P1228LcCacTa3969039761AY.390.980799
ORF1ab/nsp31228P1228LCCaTTa6939761AY.390.001705
ORF1ab/nsp31228P1228LcCAcTT239761AY.390.000049
ORF1ab/nsp31228P1228LcCacTa3754837592AY.1020.995546
ORF1ab/nsp31228P1228LCCaTTa4437592AY.1020.001167
ORF1ab/nsp31228P1228LcCacTa2779028033AY.1190.981216
ORF1ab/nsp31228P1228LCCaTTa24328033AY.1190.00858
ORF1ab/nsp31228P1228LcCacTa2652026530AY.1200.985984
ORF1ab/nsp31228P1228LCCaTTa526530AY.1200.000186
ORF1ab/nsp31228P1228LcCAcTG426530AY.1200.000149
ORF1ab/nsp31228P1228LcCAcTT126530AY.1200.000037
ORF1ab/nsp31228P1228LcCacTa2543825467AY.200.988651
ORF1ab/nsp31228P1228LCCaTTa2925467AY.200.001127
ORF1ab/nsp31228P1228LcCacTa2459924609AY.39.10.974449
ORF1ab/nsp31228P1228LCCaTTa1024609AY.39.10.000396
ORF1ab/nsp31228P1228LcCacTa2456124566AY.420.988092
ORF1ab/nsp31228P1228LCCaTTa524566AY.420.000201
ORF1ab/nsp31228P1228LcCacTa2401624024AY.60.987744
ORF1ab/nsp31228P1228LCCaTTa524024AY.60.000206
ORF1ab/nsp31228P1228LcCAcTT224024AY.60.000082
ORF1ab/nsp31228P1228LcCAcTG124024AY.60.000041
ORF1ab/nsp31228P1228LcCacTa2157621588AY.1000.992639
ORF1ab/nsp31228P1228LCCaTTa1121588AY.1000.000506
ORF1ab/nsp31228P1228LcCAcTT121588AY.1000.000046
ORF1ab/nsp31228P1228LcCacTa2034420368AY.98.10.985277
ORF1ab/nsp31228P1228LCCaTTa2420368AY.98.10.001162
ORF1ab/nsp31228P1228LcCacTa1575315757AY.1180.986906
ORF1ab/nsp31228P1228LCCaTTa415757AY.1180.000251
ORF1ab/nsp31228P1228LcCacTa1473614748AY.330.98404
ORF1ab/nsp31228P1228LCCaTTa1214748AY.330.000801
ORF1ab/nsp31228P1228LcCacTa1395413957AY.230.973286
ORF1ab/nsp31228P1228LCCaTTa313957AY.230.000209
ORF1ab/nsp31228P1228LcCacTa1375213753AY.46.60.992996
ORF1ab/nsp31228P1228LCCaTTa113753AY.46.60.000072
ORF1ab/nsp31228P1228LcCacTa1224912250AY.980.967612
ORF1ab/nsp31228P1228LCCaTTa112250AY.980.000079
ORF1ab/nsp31228P1228LcCacTa1166611666AY.3.10.994629
ORF1ab/nsp31228P1228LcCacTa1157011579AY.1170.977857
ORF1ab/nsp31228P1228LCCaTTa911579AY.1170.000761
ORF1ab/nsp31228P1228LcCacTa1079910804AY.99.20.995208
ORF1ab/nsp31228P1228LCCaTTa510804AY.99.20.000461
ORF1ab/nsp31228P1228LcCacTa1020410204AY.340.989431
ORF1ab/nsp31228P1228LcCacTa93529357AY.460.973356
ORF1ab/nsp31228P1228LCCaTTa59357AY.460.00052
ORF1ab/nsp31228P1228LcCacTa92469260AY.4.50.993873
ORF1ab/nsp31228P1228LCCaTTa149260AY.4.50.001505
ORF1ab/nsp31228P1228LcCacTa88358835AY.7.10.995717
ORF1ab/nsp31228P1228LcCacTa77307802AY.450.940618
ORF1ab/nsp31228P1228LCCaTTa727802AY.450.008761
ORF1ab/nsp31228P1228LcCacTa73037304AY.1210.988227
ORF1ab/nsp31228P1228LCCaTTa17304AY.1210.000135
ORF1ab/nsp31228P1228LcCacTa68636868AY.1130.977218
ORF1ab/nsp31228P1228LCCaTTa56868AY.1130.000712
ORF1ab/nsp31228P1228LcCacTa66696676AY.360.988439
ORF1ab/nsp31228P1228LCCaTTa76676AY.360.001037
ORF1ab/nsp31228P1228LcCacTa64906493AY.4.2.10.966925
ORF1ab/nsp31228P1228LCCaTTa36493AY.4.2.10.000447
ORF1ab/nsp31228P1228LcCacTa60306033AY.46.40.991939
ORF1ab/nsp31228P1228LCCaTTa36033AY.46.40.000494
ORF1ab/nsp31228P1228LcCacTa54725472AY.1100.616633
ORF1ab/nsp31228P1228LcCacTa53645378AY.1110.982418
ORF1ab/nsp31228P1228LCCaTTa145378AY.1110.002564
ORF1ab/nsp31228P1228LcCacTa50645066AY.70.992552
ORF1ab/nsp31228P1228LCCaTTa25066AY.70.000392
ORF1ab/nsp31228P1228LcCacTa49474948AY.46.50.981548
ORF1ab/nsp31228P1228LCCaTTa14948AY.46.50.000198
ORF1ab/nsp31228P1228LcCacTa45354535AY.29.11
ORF1ab/nsp31228P1228SCcaTca43654365All0.000835
ORF1ab/nsp31228P1228LcCacTa42634264AY.1140.985209
ORF1ab/nsp31228P1228LCCaTTa14264AY.1140.000231
ORF1ab/nsp31228P1228LcCacTa35833589AY.930.978427
ORF1ab/nsp31228P1228LCCaTTa53589AY.930.001365
ORF1ab/nsp31228P1228LcCAcTG13589AY.930.000273
ORF1ab/nsp31228P1228LcCacTa34683470AY.5.40.959602
ORF1ab/nsp31228P1228LCCaTTa23470AY.5.40.000553
ORF1ab/nsp31228P1228LcCacTa33723372AY.410.991182
ORF1ab/nsp31228P1228LcCacTa33423370AY.1160.958417
ORF1ab/nsp31228P1228LCCaTTa283370AY.1160.00803
ORF1ab/nsp31228P1228LcCacTa33173317AY.9.20.121832
ORF1ab/nsp31228P1228LcCacTa32943296AY.920.94628
ORF1ab/nsp31228P1228LCCaTTa23296AY.920.000575
ORF1ab/nsp31228P1228LcCacTa31793180AY.116.10.990034
ORF1ab/nsp31228P1228LCCaTTa13180AY.116.10.000311
ORF1ab/nsp31228P1228LcCacTa31303141AY.120.989254
ORF1ab/nsp31228P1228LCCaTTa113141AY.120.003477
ORF1ab/nsp31228P1228LcCacTa30853089AY.120.10.990369
ORF1ab/nsp31228P1228LCCaTTa43089AY.120.10.001284
ORF1ab/nsp31228P1228LcCacTa29452946AY.1060.986269
ORF1ab/nsp31228P1228LCCaTTa12946AY.1060.000335
ORF1ab/nsp31228P1228LcCacTa28832884AY.5.30.972672
ORF1ab/nsp31228P1228LCCaTTa12884AY.5.30.000337
ORF1ab/nsp31228P1228LcCacTa24842488AY.10.982984
ORF1ab/nsp31228P1228LCCaTTa42488AY.10.001583
ORF1ab/nsp31228P1228LcCacTa24262426AY.4.40.992635
ORF1ab/nsp31228P1228LcCacTa23962396AY.23.11
ORF1ab/nsp31228P1228LcCacTa23022302AY.850.98334
ORF1ab/nsp31228P1228LcCacTa22562256AY.940.998672
ORF1ab/nsp31228P1228LcCacTa22322233AY.840.976378
ORF1ab/nsp31228P1228LCCaTTa12233AY.840.000437
ORF1ab/nsp31228P1228LcCacTa21302130AY.1070.992544
ORF1ab/nsp31228P1228LcCacTa20202020AY.1010.990682
ORF1ab/nsp31228P1228LcCacTa19062002AY.120.2.10.949676
ORF1ab/nsp31228P1228LCCaTTa962002AY.120.2.10.047833
ORF1ab/nsp31228P1228SCcaTca19951995B.1.1.70.001786
ORF1ab/nsp31228P1228LcCacTa19441944AY.34.10.991331
ORF1ab/nsp31228P1228LcCacTa18001821AY.320.958466
ORF1ab/nsp31228P1228LCCaTTa211821AY.320.011182
ORF1ab/nsp31228P1228LcCacTa17741774AY.7.20.99217
ORF1ab/nsp31228P1228LcCacTa17421742B.1.1.70.001559
ORF1ab/nsp31228P1228LcCacTa14651465AY.46.20.93075
ORF1ab/nsp31228P1228LcCacTa14581459AY.1050.937621
ORF1ab/nsp31228P1228LcCAcTG11459AY.1050.000643
ORF1ab/nsp31228P1228LcCacTa14331435AY.900.980835
ORF1ab/nsp31228P1228LCCaTTa21435AY.900.001369
ORF1ab/nsp31228P1228LcCacTa13741374AY.39.1.10.995652
ORF1ab/nsp31228P1228LcCacTa13491349AY.4.10.994838
ORF1ab/nsp31228P1228LcCacTa13061306AY.1090.965976
ORF1ab/nsp31228P1228LcCacTa13011301AY.910.950329
ORF1ab/nsp31228P1228LcCacTa12681270AY.950.964992
ORF1ab/nsp31228P1228LcCAcTT21270AY.950.001522
ORF1ab/nsp31228P1228LcCacTa11721173AY.870.975853
ORF1ab/nsp31228P1228LCCaTTa11173AY.870.000833
ORF1ab/nsp31228P1228LcCacTa11691169AY.4.30.984007
ORF1ab/nsp31228P1228LcCacTa11411142AY.860.946888
ORF1ab/nsp31228P1228LCCaTTa11142AY.860.00083
ORF1ab/nsp31228P1228LcCacTa11311131B.1.351.30.991236
ORF1ab/nsp31228P1228LcCacTa10771077AY.880.952255
ORF1ab/nsp31228P1228LcCacTa10661066AY.46.30.995331
ORF1ab/nsp31228P1228LcCacTa10091013AY.470.031385
ORF1ab/nsp31228P1228LCCaTTa41013AY.470.000124
ORF1ab/nsp31228P1228LcCacTa953954AY.46.10.978439
ORF1ab/nsp31228P1228LCCaTTa1954AY.46.10.001027
ORF1ab/nsp31228P1228LcCacTa946948B.10.008665
ORF1ab/nsp31228P1228LCCaTTa2948B.10.000018
ORF1ab/nsp31228P1228LcCacTa935937AY.990.981112
ORF1ab/nsp31228P1228LCCaTTa2937AY.990.002099
ORF1ab/nsp31228P1228LcCacTa880880AY.800.993228
ORF1ab/nsp31228P1228LcCacTa867869AY.750.048571
ORF1ab/nsp31228P1228LCCaTTa2869AY.750.000112
ORF1ab/nsp31228P1228LcCacTa836837AY.770.942503
ORF1ab/nsp31228P1228LCCaTTa1837AY.770.001127
ORF1ab/nsp31228P1228LcCacTa808809AY.790.978208
ORF1ab/nsp31228P1228LCCaTTa1809AY.790.001211
ORF1ab/nsp31228P1228LcCacTa755755AY.1080.832415
ORF1ab/nsp31228P1228LcCacTa712712AY.120.20.915167
ORF1ab/nsp31228P1228LcCacTa700701AY.820.949796
ORF1ab/nsp31228P1228LCCaTTa1701AY.820.001357
ORF1ab/nsp31228P1228LcCacTa648649AY.39.20.998459
ORF1ab/nsp31228P1228LCCaTTa1649AY.39.20.001541
ORF1ab/nsp31228P1228LcCacTa638638AY.99.10.990683
ORF1ab/nsp31228P1228LcCacTa626626B.1.20.005512
ORF1ab/nsp31228P1228LcCacTa614614AY.730.408516
ORF1ab/nsp31228P1228LcCacTa610610AY.780.939908
ORF1ab/nsp31228P1228LcCacTa610610B.1.3620.939908
ORF1ab/nsp31228P1228LcCacTa582582AY.970.989796
ORF1ab/nsp31228P1228LcCacTa574574AY.830.989655
ORF1ab/nsp31228P1228LcCacTa555557B0.070936
ORF1ab/nsp31228P1228LCCaTTa2557B0.000256
ORF1ab/nsp31228P1228LcCacTa499499AY.1040.990079
ORF1ab/nsp31228P1228LcCacTa492492AY.680.134684
ORF1ab/nsp31228P1228LcCacTa491491L.10.935238
ORF1ab/nsp31228P1228LcCacTa482482AY.810.960159
ORF1ab/nsp31228P1228LcCacTa472472AY.210.895636
ORF1ab/nsp31228P1228LcCacTa467467AY.220.976987
ORF1ab/nsp31228P1228LcCacTa459459AY.960.952282
ORF1ab/nsp31228P1228LcCacTa453453AY.550.415596
ORF1ab/nsp31228P1228RcCacGa410410All0.000078
ORF1ab/nsp31228P1228SCcaTca404404B.1.6250.950588
ORF1ab/nsp31228P1228LcCacTa396397AY.5.20.975369
ORF1ab/nsp31228P1228LCCaTTa1397AY.5.20.002463
ORF1ab/nsp31228P1228LcCacTa381381AY.740.044062
ORF1ab/nsp31228P1228RcCacGa374374B.1.1.70.000335
ORF1ab/nsp31228P1228LcCacTa350350AY.540.033371
ORF1ab/nsp31228P1228SCcaTca329329B.1.1.2550.99697
ORF1ab/nsp31228P1228LcCacTa314316P.10.004947
ORF1ab/nsp31228P1228LCCaTTa2316P.10.000032
ORF1ab/nsp31228P1228LcCacTa300300AY.260.008493
ORF1ab/nsp31228P1228LcCacTa295295AY.580.267695
ORF1ab/nsp31228P1228LcCacTa293293AY.590.155191
ORF1ab/nsp31228P1228LcCacTa278278AY.190.31699
ORF1ab/nsp31228P1228LcCacTa266266AY.5.11
ORF1ab/nsp31228P1228LcCacTa247247AY.75.10.044537
ORF1ab/nsp31228P1228LcCacTa245245AY.91.10.995935
ORF1ab/nsp31228P1228PccAccT125235All0.000024
ORF1ab/nsp31228P1228PccAccG97235All0.000019
ORF1ab/nsp31228P1228PccAccC13235All0.000002
ORF1ab/nsp31228P1228LcCacTa232233AY.530.066705
ORF1ab/nsp31228P1228LCCaTTa1233AY.530.000288
ORF1ab/nsp31228P1228SCcaTca212212B.1.20.001867
ORF1ab/nsp31228P1228LcCacTa212212B.1.362.21
ORF1ab/nsp31228P1228LcCacTa202203AY.760.975845
ORF1ab/nsp31228P1228LCCaTTa1203AY.760.004831
ORF1ab/nsp31228P1228LcCacTa201201AY.890.985294
ORF1ab/nsp31228P1228SCcaTca199199B.10.001823
ORF1ab/nsp31228P1228LcCacTa193193AY.520.157166
ORF1ab/nsp31228P1228LcCacTa189189AY.1150.984375
ORF1ab/nsp31228P1228LcCacTa182182AY.620.079303
ORF1ab/nsp31228P1228LcCacTa182182AY.690.033974
ORF1ab/nsp31228P1228LcCacTa176176AY.640.104762
ORF1ab/nsp31228P1228LcCacTa158158AY.100.083731
ORF1ab/nsp31228P1228LcCacTa155156AY.670.071959
ORF1ab/nsp31228P1228LcCAcTT1156AY.670.000464
ORF1ab/nsp31228P1228LcCacTa150150AY.370.047408
ORF1ab/nsp31228P1228LcCacTa149149AY.560.239165
ORF1ab/nsp31228P1228LcCacTa148148AY.380.073889
ORF1ab/nsp31228P1228LcCacTa147147B.1.10.002667
ORF1ab/nsp31228P1228LcCacTa130130AY.630.05029
ORF1ab/nsp31228P1228TCcaAca127128All0.000024
ORF1ab/nsp31228P1228TCcAAcT1128All0
ORF1ab/nsp31228P1228LcCacTa128128AY.160.048595
ORF1ab/nsp31228P1228LcCacTa119119AY.140.010474
ORF1ab/nsp31228P1228LcCacTa119119B.1.5950.031054
ORF1ab/nsp31228P1228SCcaTca114114B.1.2580.007586
ORF1ab/nsp31228P1228LcCacTa104104AY.130.016742
ORF1ab/nsp31228P1228LcCacTa104104AY.570.068241
ORF1ab/nsp31228P1228LcCacTa9898AY.400.094503
ORF1ab/nsp31228P1228LcCacTa9595B.1.1770.001251
ORF1ab/nsp31228P1228delCCA---9292All0.000018
ORF1ab/nsp31228P1228LcCacTa8990AY.480.041395
ORF1ab/nsp31228P1228LCCaTTa190AY.480.000465
ORF1ab/nsp31228P1228PccAccT5888B.1.1.70.000052
ORF1ab/nsp31228P1228PccAccG2188B.1.1.70.000019
ORF1ab/nsp31228P1228PccAccC988B.1.1.70.000008
ORF1ab/nsp31228P1228LcCacTa8787B.1.3510.002586
ORF1ab/nsp31228P1228LcCacTa8585AY.700.017723
ORF1ab/nsp31228P1228LcCacTa8383AY.350.019343
ORF1ab/nsp31228P1228LcCacTa8080AY.610.008382
ORF1ab/nsp31228P1228SCcaTca7474B.1.4290.001741
ORF1ab/nsp31228P1228LcCacTa6969C.36.30.039138
ORF1ab/nsp31228P1228LcCacTa6565AY.710.030879
ORF1ab/nsp31228P1228LcCacTa6363AY.650.033582
ORF1ab/nsp31228P1228LcCacTa6363B.1.5250.007129
ORF1ab/nsp31228P1228LcCacTa6262AY.600.058161
ORF1ab/nsp31228P1228SCcaTca6262B.1.5260.001457
ORF1ab/nsp31228P1228SCcaTca6060B.1.2730.779221
ORF1ab/nsp31228P1228TCcaAca5859P.10.000914
ORF1ab/nsp31228P1228TCcAAcT159P.10.000016
ORF1ab/nsp31228P1228LcCacTa5858B.1.351.20.017549
ORF1ab/nsp31228P1228SCcaTca5858P.10.000914
ORF1ab/nsp31228P1228LcCacTa5656B.1.1.280.017429
ORF1ab/nsp31228P1228LcCacTa5555B.1.2580.00366
ORF1ab/nsp31228P1228LcCacTa5354AY.110.07095
ORF1ab/nsp31228P1228LCCaTTa154AY.110.001339
ORF1ab/nsp31228P1228LcCacTa5353B.1.1600.001653
ORF1ab/nsp31228P1228PccAccT4148B.1.20.000361
ORF1ab/nsp31228P1228PccAccG748B.1.20.000062
ORF1ab/nsp31228P1228SCcaTca4444B.1.10.000798
ORF1ab/nsp31228P1228SCcaTca4343B.1.1770.000566
ORF1ab/nsp31228P1228LcCacTa4141B.1.4270.00207
ORF1ab/nsp31228P1228SCcaTca4040AY.260.001132
ORF1ab/nsp31228P1228LcCacTa4040B.1.5260.00094
ORF1ab/nsp31228P1228ICCaATa3939All0.000007
ORF1ab/nsp31228P1228LcCacTa3737AY.490.118211
ORF1ab/nsp31228P1228LcCacTa3737AY.500.029576
ORF1ab/nsp31228P1228SCcaTca3737B.1.1.700.012619
ORF1ab/nsp31228P1228TCcaAca3535AY.640.020833
ORF1ab/nsp31228P1228LcCacTa3434AY.300.013455
ORF1ab/nsp31228P1228LcCacTa3131AY.240.013362
ORF1ab/nsp31228P1228LcCacTa3131B.1.1.5190.001231
ORF1ab/nsp31228P1228LcCacTa3131B.1.2420.584906
ORF1ab/nsp31228P1228LcCacTa3030AY.170.245902
ORF1ab/nsp31228P1228LcCacTa3030B.1.4390.177515
ORF1ab/nsp31228P1228SCcaTca2929B.1.438.10.003111
ORF1ab/nsp31228P1228LcCacTa2828B.1.1700.12069
ORF1ab/nsp31228P1228QcCacAa2727All0.000005
ORF1ab/nsp31228P1228LcCacTa2727AY.90.001825
ORF1ab/nsp31228P1228LcCacTa2727B.1.6090.012943
ORF1ab/nsp31228P1228LcCacTa2525B.1.4290.000588
ORF1ab/nsp31228P1228LcCacTa2525C.370.002902
ORF1ab/nsp31228P1228ACcaGca2323All0.000004
ORF1ab/nsp31228P1228SCcaTca2323B.1.1.5190.000913
ORF1ab/nsp31228P1228SCcaTca2323B.1.1600.000717
ORF1ab/nsp31228P1228LcCacTa2323C.350.017802
ORF1ab/nsp31228P1228del2CCa--a2222All0.000004
ORF1ab/nsp31228P1228LcCacTa2222AY.510.02
ORF1ab/nsp31228P1228LcCacTa2222P.1.70.007024
ORF1ab/nsp31228P1228LcCacTa2121AY.280.039698
ORF1ab/nsp31228P1228LcCacTa2121B.1.360.003064
ORF1ab/nsp31228P1228RcCacGa2020AY.440.000122
ORF1ab/nsp31228P1228del2CCa--a2020AY.46.50.003968
ORF1ab/nsp31228P1228LcCacTa2020AY.9.10.001674
ORF1ab/nsp31228P1228LcCacTa2020B.1.1.980.37037
ORF1ab/nsp31228P1228SCcaTca2020B.1.177.750.020812
ORF1ab/nsp31228P1228LcCacTa2020B.1.6210.00177
ORF1ab/nsp31228P1228LcCacTa1919B.1.1.3180.005733
ORF1ab/nsp31228P1228SCcaTca1919B.1.617.20.000072
ORF1ab/nsp31228P1228SCcaTca1818AY.470.00056
ORF1ab/nsp31228P1228LcCacTa1818B.1.177.190.025751
ORF1ab/nsp31228P1228SCcaTca1818B.1.6210.001593
ORF1ab/nsp31228P1228SCcaTca1818B.1.621.10.009105
ORF1ab/nsp31228P1228PccAccG1717B.1.5960.001481
ORF1ab/nsp31228P1228LcCacTa1717B.1.617.10.002192
ORF1ab/nsp31228P1228SCcaTca1717B.1.6370.001242
ORF1ab/nsp31228P1228LcCacTa1616AY.80.009697
ORF1ab/nsp31228P1228LcCacTa1616B.1.1.1530.017525
ORF1ab/nsp31228P1228delCCA---1616B.1.617.20.00006
ORF1ab/nsp31228P1228SCcaTca1616R.10.00144
ORF1ab/nsp31228P1228LcCacTa1515B.1.362.11
ORF1ab/nsp31228P1228SCcaTca1515P.1.70.004789
ORF1ab/nsp31228P1228SCcaTca1414B.1.3510.000416
ORF1ab/nsp31228P1228SCcaTca1313AH.30.04943
ORF1ab/nsp31228P1228delCCA---1313AY.1000.000598
ORF1ab/nsp31228P1228LcCacTa1313AY.660.013904
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.2140.000721
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.440.031325
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.5260.046099
ORF1ab/nsp31228P1228LcCacTa1313B.1.5170.005551
ORF1ab/nsp31228P1228LcCacTa1212AY.270.000777
ORF1ab/nsp31228P1228ICCaATa1212AY.40.000019
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.2220.002448
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.4450.444444
ORF1ab/nsp31228P1228LcCacTa1212B.1.2210.000852
ORF1ab/nsp31228P1228SCcaTca1212B.1.258.170.001248
ORF1ab/nsp31228P1228LcCacTa1212B.1.6280.004228
ORF1ab/nsp31228P1228LcCacTa1111A.20.00728
ORF1ab/nsp31228P1228LcCacTa1111AY.720.014966
ORF1ab/nsp31228P1228LcCacTa1111B.1.5760.009973
ORF1ab/nsp31228P1228LcCacTa1111P.1.140.000526
ORF1ab/nsp31228P1228LcCacTa1010AY.16.10.004699
ORF1ab/nsp31228P1228delCCA---1010AY.440.000061
ORF1ab/nsp31228P1228SCcaTca1010B.1.1.630.003858
ORF1ab/nsp31228P1228SCcaTca1010B.1.4360.010288
ORF1ab/nsp31228P1228LcCacTa1010B.1.5960.000871
ORF1ab/nsp31228P1228SCcaTca99B.1.1.250.005117
ORF1ab/nsp31228P1228LcCacTa99B.1.1.2840.000967
ORF1ab/nsp31228P1228ACcaGca99B.1.1.70.000008
ORF1ab/nsp31228P1228PccAccT99B.1.4270.000454
ORF1ab/nsp31228P1228ACcaGca99B.1.4280.009184
ORF1ab/nsp31228P1228LcCacTa99B.1.5610.003573
ORF1ab/nsp31228P1228LcCacTa99Q.80.001484
ORF1ab/nsp31228P1228LcCacTa88B.1.1.2220.001632
ORF1ab/nsp31228P1228SCcaTca88B.1.1.3180.002414
ORF1ab/nsp31228P1228delCCA---88B.1.1.70.000007
ORF1ab/nsp31228P1228PccAccG58B.1.1770.000066
ORF1ab/nsp31228P1228PccAccT38B.1.1770.00004
ORF1ab/nsp31228P1228SCcaTca88B.1.3690.002282
ORF1ab/nsp31228P1228SCcaTca88B.1.6230.004292
ORF1ab/nsp31228P1228LcCacTa88B.1.6230.004292
ORF1ab/nsp31228P1228LcCacTa88B.400.002914
ORF1ab/nsp31228P1228PccAccG88P.10.000126
ORF1ab/nsp31228P1228SCcaTca88Q.10.001011
ORF1ab/nsp31228P1228SCcaTca77AY.270.000453
ORF1ab/nsp31228P1228SCcaTca77AY.350.001631
ORF1ab/nsp31228P1228ICCaATa77AY.440.000043
ORF1ab/nsp31228P1228RcCacGa77B.1.1.2650.022082
ORF1ab/nsp31228P1228LcCacTa77B.1.177.40.001477
ORF1ab/nsp31228P1228SCcaTca77B.1.2210.000497
ORF1ab/nsp31228P1228SCcaTca77B.1.2340.000924
ORF1ab/nsp31228P1228LcCacTa77B.1.258.170.000728
ORF1ab/nsp31228P1228LcCacTa77B.1.3490.005004
ORF1ab/nsp31228P1228SCcaTca77B.1.5250.000792
ORF1ab/nsp31228P1228LcCacTa77B.1.6370.000512
ORF1ab/nsp31228P1228LcCacTa66AY.20.002137
ORF1ab/nsp31228P1228SCcaTca66AY.610.000629
ORF1ab/nsp31228P1228LcCacTa66B.1.1.1700.007481
ORF1ab/nsp31228P1228LcCacTa66B.1.1.370.001157
ORF1ab/nsp31228P1228LcCacTa66B.1.1.4320.007595
ORF1ab/nsp31228P1228TCcaAca66B.1.1.70.000005
ORF1ab/nsp31228P1228LcCacTa66B.1.1390.004399
ORF1ab/nsp31228P1228SCcaTca66B.1.177.860.001101
ORF1ab/nsp31228P1228SCcaTca66B.1.2430.000418
ORF1ab/nsp31228P1228SCcaTca66B.1.3110.001647
ORF1ab/nsp31228P1228LcCacTa66B.1.36.80.006
ORF1ab/nsp31228P1228LcCacTa66B.1.3690.001711
ORF1ab/nsp31228P1228LcCacTa66B.1.466.20.002347
ORF1ab/nsp31228P1228SCcaTca66B.1.5960.000523
ORF1ab/nsp31228P1228SCcaTca66C.370.000696
ORF1ab/nsp31228P1228PccAccG66P.1.150.001394
ORF1ab/nsp31228P1228LcCacTa66P.20.00112
ORF1ab/nsp31228P1228LcCacTa55A0.001935
ORF1ab/nsp31228P1228SCcaTca55A.210.01385
ORF1ab/nsp31228P1228LcCacTa55A.270.008278
ORF1ab/nsp31228P1228SCcaTca55AY.590.002648
ORF1ab/nsp31228P1228SCcaTca55AY.90.000338
ORF1ab/nsp31228P1228SCcaTca55B0.000639
ORF1ab/nsp31228P1228PccAccT45B.10.000037
ORF1ab/nsp31228P1228PccAccG15B.10.000009
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1380.030303
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1760.002197
ORF1ab/nsp31228P1228SCcaTca55B.1.1.2140.000277
ORF1ab/nsp31228P1228LcCacTa55B.1.1.250.002843
ORF1ab/nsp31228P1228LcCacTa55B.1.1.330.002104
ORF1ab/nsp31228P1228LcCacTa55B.1.1.3480.003981
ORF1ab/nsp31228P1228SCcaTca55B.1.1.370.000964
ORF1ab/nsp31228P1228SCcaTca55B.1.1280.003177
ORF1ab/nsp31228P1228TCcaAca55B.1.1770.000066
ORF1ab/nsp31228P1228LcCacTa55B.1.177.320.006748
ORF1ab/nsp31228P1228LcCacTa55B.1.2400.001078
ORF1ab/nsp31228P1228SCcaTca55B.1.2760.084746
ORF1ab/nsp31228P1228LcCacTa55B.1.3750.004098
ORF1ab/nsp31228P1228SCcaTca55B.1.4200.052083
ORF1ab/nsp31228P1228LcCacTa55B.1.4740.009506
ORF1ab/nsp31228P1228SCcaTca55B.1.5650.004052
ORF1ab/nsp31228P1228QcCacAa55B.1.5960.000436
ORF1ab/nsp31228P1228LcCacTa55B.1.619.10.003207
ORF1ab/nsp31228P1228LcCacTa55P.1.120.00242
ORF1ab/nsp31228P1228SCcaTca55Q.80.000825
ORF1ab/nsp31228P1228del1ccAcc-44All0.000001
ORF1ab/nsp31228P1228ICCaATa44AY.1030.000025
ORF1ab/nsp31228P1228delCCA---44AY.40.000006
ORF1ab/nsp31228P1228SCcaTca44AY.510.003636
ORF1ab/nsp31228P1228SCcaTca44AY.750.000224
ORF1ab/nsp31228P1228SCcaTca44AY.9.10.000335
ORF1ab/nsp31228P1228SCcaTca44AY.9.20.000147
ORF1ab/nsp31228P1228QcCacAa44B.10.000037
ORF1ab/nsp31228P1228TCcaAca44B.1.10.000073
ORF1ab/nsp31228P1228PccAccG34B.1.10.000054
ORF1ab/nsp31228P1228PccAccC14B.1.10.000018
ORF1ab/nsp31228P1228LcCacTa44B.1.1.1760.001757
ORF1ab/nsp31228P1228LcCacTa44B.1.1.1920.009238
ORF1ab/nsp31228P1228LcCacTa44B.1.1.2200.007435
ORF1ab/nsp31228P1228SCcaTca44B.1.1.280.001245
ORF1ab/nsp31228P1228LcCacTa44B.1.1.3170.001647
ORF1ab/nsp31228P1228SCcaTca44B.1.1.390.002039
ORF1ab/nsp31228P1228LcCacTa44B.1.1.3980.012903
ORF1ab/nsp31228P1228LcCacTa44B.1.1.4340.001394
ORF1ab/nsp31228P1228LcCacTa44B.1.1.480.011494
ORF1ab/nsp31228P1228QcCacAa44B.1.1.70.000004
ORF1ab/nsp31228P1228SCcaTca44B.1.177.120.000607
ORF1ab/nsp31228P1228LcCacTa44B.1.177.730.002265
ORF1ab/nsp31228P1228LcCacTa44B.1.177.870.002911
ORF1ab/nsp31228P1228LcCacTa44B.1.2140.014652
ORF1ab/nsp31228P1228LcCacTa44B.1.2430.000278
ORF1ab/nsp31228P1228TCcaAca44B.1.2580.000266
ORF1ab/nsp31228P1228QcCacAa44B.1.2580.000266
ORF1ab/nsp31228P1228LcCacTa44B.1.2650.005083
ORF1ab/nsp31228P1228LcCacTa44B.1.3110.001098
ORF1ab/nsp31228P1228SCcaTca44B.1.360.000584
ORF1ab/nsp31228P1228LcCacTa44B.1.4000.001716
ORF1ab/nsp31228P1228SCcaTca44B.1.4270.000202
ORF1ab/nsp31228P1228PccAccG44B.1.5250.000453
ORF1ab/nsp31228P1228PccAccT44B.1.5260.000094
ORF1ab/nsp31228P1228SCcaTca44B.1.6090.001918
ORF1ab/nsp31228P1228SCcaTca44B.1.617.30.01194
ORF1ab/nsp31228P1228LcCacTa44P.1.10.001271
ORF1ab/nsp31228P1228LcCacTa44P.1.130.003594
ORF1ab/nsp31228P1228LcCacTa44P.1.150.000929
ORF1ab/nsp31228P1228LcCacTa44P.1.170.000647
ORF1ab/nsp31228P1228PccAccG44P.20.000747
ORF1ab/nsp31228P1228LcCacTa33A.10.000846
ORF1ab/nsp31228P1228SCcaTca33AY.130.000483
ORF1ab/nsp31228P1228SCcaTca33AY.140.000264
ORF1ab/nsp31228P1228LcCacTa33AY.150.006667
ORF1ab/nsp31228P1228ICCaATa33AY.250.000018
ORF1ab/nsp31228P1228SCcaTca33AY.250.000018
ORF1ab/nsp31228P1228RcCacGa33AY.40.000005
ORF1ab/nsp31228P1228SCcaTca33AY.540.000286
ORF1ab/nsp31228P1228SCcaTca33AY.670.001393
ORF1ab/nsp31228P1228PccAccG33AY.700.000626
ORF1ab/nsp31228P1228LcCacTa33AZ.50.010526
ORF1ab/nsp31228P1228delCCA---33B.10.000027
ORF1ab/nsp31228P1228TCcaAca33B.10.000027
ORF1ab/nsp31228P1228delCCA---33B.1.10.000054
ORF1ab/nsp31228P1228LcCacTa33B.1.1.1210.007282
ORF1ab/nsp31228P1228LcCacTa33B.1.1.2910.002227
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3060.001315
ORF1ab/nsp31228P1228LcCacTa33B.1.1.3160.002775
ORF1ab/nsp31228P1228LcCacTa33B.1.1.3260.005282
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3480.002389
ORF1ab/nsp31228P1228LcCacTa33B.1.1.4130.02069
ORF1ab/nsp31228P1228LcCacTa33B.1.1.4480.006098
ORF1ab/nsp31228P1228PccAccG23B.1.1.5190.000079
ORF1ab/nsp31228P1228PccAccT13B.1.1.5190.00004
ORF1ab/nsp31228P1228LcCacTa33B.1.1570.008955
ORF1ab/nsp31228P1228LcCacTa33B.1.160.220.02027
ORF1ab/nsp31228P1228LcCacTa33B.1.177.440.001557
ORF1ab/nsp31228P1228LcCacTa33B.1.177.570.000843
ORF1ab/nsp31228P1228LcCacTa33B.1.177.70.000495
ORF1ab/nsp31228P1228LcCacTa33B.1.177.860.00055
ORF1ab/nsp31228P1228SCcaTca33B.1.177.870.002183
ORF1ab/nsp31228P1228SCcaTca33B.1.1950.015075
ORF1ab/nsp31228P1228LcCacTa33B.1.2080.12
ORF1ab/nsp31228P1228LcCacTa33B.1.214.20.001799
ORF1ab/nsp31228P1228LcCacTa33B.1.3350.030928
ORF1ab/nsp31228P1228LcCacTa33B.1.36.100.014354
ORF1ab/nsp31228P1228LcCacTa33B.1.36.290.001552
ORF1ab/nsp31228P1228SCcaTca33B.1.36.290.001552
ORF1ab/nsp31228P1228LcCacTa33B.1.4040.003906
ORF1ab/nsp31228P1228LcCacTa33B.1.4590.012245
ORF1ab/nsp31228P1228LcCacTa33B.1.5640.001278
ORF1ab/nsp31228P1228PccAccG33B.1.5750.00091
ORF1ab/nsp31228P1228LcCacTa33B.1.6000.017544
ORF1ab/nsp31228P1228LcCacTa33B.1.6040.051724
ORF1ab/nsp31228P1228RcCacGa33B.1.617.20.000011
ORF1ab/nsp31228P1228LcCacTa33B.1.621.10.001517
ORF1ab/nsp31228P1228LcCacTa33B.550.00885
ORF1ab/nsp31228P1228LcCacTa33C.37.10.007853
ORF1ab/nsp31228P1228SCcaTca33D.20.000225
ORF1ab/nsp31228P1228LcCacTa33N.50.0053
ORF1ab/nsp31228P1228LcCacTa33N.60.021277
ORF1ab/nsp31228P1228LcCacTa33R.10.00027
ORF1ab/nsp31228P1228SCcaTca220.111111
ORF1ab/nsp31228P1228LcCacTa220.111111
ORF1ab/nsp31228P1228SCcaTca22A.30.004193
ORF1ab/nsp31228P1228LcCacTa22AU.20.004843
ORF1ab/nsp31228P1228LcCacTa22AU.30.004219
ORF1ab/nsp31228P1228delCCA---22AY.1200.000074
ORF1ab/nsp31228P1228delCCA---22AY.1210.000271
ORF1ab/nsp31228P1228delCCA---22AY.250.000012
ORF1ab/nsp31228P1228ICCaATa22AY.4.20.000043
ORF1ab/nsp31228P1228delCCA---22AY.430.000009
ORF1ab/nsp31228P1228PccAccT12AY.430.000004
ORF1ab/nsp31228P1228PccAccG12AY.430.000004
ORF1ab/nsp31228P1228SCcaTca22AY.440.000012
ORF1ab/nsp31228P1228ACcaGca22AY.440.000012
ORF1ab/nsp31228P1228delCCA---22AY.450.000243
ORF1ab/nsp31228P1228delCCA---22AY.540.000191
ORF1ab/nsp31228P1228SCcaTca22AY.580.001815
ORF1ab/nsp31228P1228PccAccT12AY.610.000105
ORF1ab/nsp31228P1228PccAccG12AY.610.000105
ORF1ab/nsp31228P1228QcCacAa22AY.750.000112
ORF1ab/nsp31228P1228del1ccAcc-22B.10.000018
ORF1ab/nsp31228P1228LcCacTa22B.1.1.10.000653
ORF1ab/nsp31228P1228SCcaTca22B.1.1.1750.153846
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2160.001781
ORF1ab/nsp31228P1228LcCacTa22B.1.1.2650.006309
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2770.001517
ORF1ab/nsp31228P1228LcCacTa22B.1.1.2940.002532
ORF1ab/nsp31228P1228LcCacTa22B.1.1.3060.000877
ORF1ab/nsp31228P1228LcCacTa22B.1.1.3110.000716
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3170.000823
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3690.000892
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3720.001377
ORF1ab/nsp31228P1228LcCacTa22B.1.1.390.001019
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4160.00181
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4320.002532
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4340.000697
ORF1ab/nsp31228P1228SCcaTca22B.1.1.440.004819
ORF1ab/nsp31228P1228LcCacTa22B.1.1.4640.002946
ORF1ab/nsp31228P1228LcCacTa22B.1.1.500.001358
ORF1ab/nsp31228P1228LcCacTa22B.1.1.5170.013605
ORF1ab/nsp31228P1228LcCacTa22B.1.1.5230.003125
ORF1ab/nsp31228P1228LcCacTa22B.1.1.630.000772
ORF1ab/nsp31228P1228LcCacTa22B.1.1.720.060606
ORF1ab/nsp31228P1228SCcaTca22B.1.130.004751
ORF1ab/nsp31228P1228LcCacTa22B.1.1430.042553
ORF1ab/nsp31228P1228LcCacTa22B.1.177.170.001642
ORF1ab/nsp31228P1228SCcaTca22B.1.177.560.001335
ORF1ab/nsp31228P1228SCcaTca22B.1.177.730.001133
ORF1ab/nsp31228P1228SCcaTca22B.1.1990.008264
ORF1ab/nsp31228P1228TCcaAca22B.1.20.000018
ORF1ab/nsp31228P1228LcCacTa22B.1.2180.010309
ORF1ab/nsp31228P1228LcCacTa22B.1.2340.000264
ORF1ab/nsp31228P1228LcCacTa22B.1.2390.002442
ORF1ab/nsp31228P1228SCcaTca22B.1.2410.001623
ORF1ab/nsp31228P1228PccAccG22B.1.258.110.000793
ORF1ab/nsp31228P1228PccAccG22B.1.30.005236
ORF1ab/nsp31228P1228LcCacTa22B.1.36.190.018519
ORF1ab/nsp31228P1228LcCacTa22B.1.3670.001585
ORF1ab/nsp31228P1228LcCacTa22B.1.3800.013245
ORF1ab/nsp31228P1228SCcaTca22B.1.3990.003868
ORF1ab/nsp31228P1228LcCacTa22B.1.4130.008511
ORF1ab/nsp31228P1228LcCacTa22B.1.4330.00639
ORF1ab/nsp31228P1228SCcaTca22B.1.5300.014286
ORF1ab/nsp31228P1228LcCacTa22B.1.5490.014388
ORF1ab/nsp31228P1228LcCacTa22B.1.5510.002581
ORF1ab/nsp31228P1228SCcaTca22B.1.5600.009259
ORF1ab/nsp31228P1228LcCacTa22B.1.5600.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.5610.000794
ORF1ab/nsp31228P1228SCcaTca22B.1.5750.000607
ORF1ab/nsp31228P1228SCcaTca22B.1.5820.000981
ORF1ab/nsp31228P1228SCcaTca22B.1.5950.000522
ORF1ab/nsp31228P1228SCcaTca22B.1.5970.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.617.10.000258
ORF1ab/nsp31228P1228LCCaTTa22B.1.6250.004706
ORF1ab/nsp31228P1228LcCacTa22B.1.6290.026667
ORF1ab/nsp31228P1228LcCacTa22B.1.700.04878
ORF1ab/nsp31228P1228LcCacTa22B.1.9.50.011364
ORF1ab/nsp31228P1228LcCacTa22B.40.004415
ORF1ab/nsp31228P1228LcCacTa22C.140.008658
ORF1ab/nsp31228P1228LcCacTa22C.36.3.10.005435
ORF1ab/nsp31228P1228LcCacTa22D.20.00015
ORF1ab/nsp31228P1228SCcaTca22N.50.003534
ORF1ab/nsp31228P1228QcCacAa22P.10.000032
ORF1ab/nsp31228P1228LcCacTa22P.1.20.002312
ORF1ab/nsp31228P1228SCcaTca22P.20.000373
ORF1ab/nsp31228P1228RcCacGa22Q.10.000253
ORF1ab/nsp31228P1228LcCacTa22Q.20.001227
ORF1ab/nsp31228P1228RcCacGa110.055556
ORF1ab/nsp31228P1228LcCacTa11A.150.015873
ORF1ab/nsp31228P1228LcCacTa11A.2.50.000499
ORF1ab/nsp31228P1228LcCacTa11A.2.5.20.001572
ORF1ab/nsp31228P1228SCcaTca11A.230.010526
ORF1ab/nsp31228P1228LcCacTa11A.23.10.000704
ORF1ab/nsp31228P1228LcCacTa11A.50.001923
ORF1ab/nsp31228P1228SCcaTca11AD.20.000219
ORF1ab/nsp31228P1228SCcaTca11AE.80.000489
ORF1ab/nsp31228P1228ECCaGAa11All0
ORF1ab/nsp31228P1228delCCA---11AY.1010.00049
ORF1ab/nsp31228P1228ICCaATa11AY.1020.000027
ORF1ab/nsp31228P1228SCcaTca11AY.1080.001103
ORF1ab/nsp31228P1228PccAccC11AY.140.000088
ORF1ab/nsp31228P1228SCcaTca11AY.160.00038
ORF1ab/nsp31228P1228SCcaTca11AY.16.10.00047
ORF1ab/nsp31228P1228LcCacTa11AY.180.010101
ORF1ab/nsp31228P1228ICCaATa11AY.230.00007
ORF1ab/nsp31228P1228delCCA---11AY.230.00007
ORF1ab/nsp31228P1228PccAccC11AY.260.000028
ORF1ab/nsp31228P1228ICCaATa11AY.290.000016
ORF1ab/nsp31228P1228delCCA---11AY.30.00001
ORF1ab/nsp31228P1228LcCacTa11AY.310.018519
ORF1ab/nsp31228P1228ICCaATa11AY.330.000067
ORF1ab/nsp31228P1228delCCA---11AY.330.000067
ORF1ab/nsp31228P1228ICCaATa11AY.360.000148
ORF1ab/nsp31228P1228delCCA---11AY.390.000025
ORF1ab/nsp31228P1228ICCaATa11AY.39.10.00004
ORF1ab/nsp31228P1228SCcaTca11AY.40.000002
ORF1ab/nsp31228P1228ICCaATa11AY.420.00004
ORF1ab/nsp31228P1228QcCacAa11AY.430.000004
ORF1ab/nsp31228P1228SCcaTca11AY.450.000122
ORF1ab/nsp31228P1228ICCaATa11AY.460.000104
ORF1ab/nsp31228P1228delCCA---11AY.460.000104
ORF1ab/nsp31228P1228delCCA---11AY.46.50.000198
ORF1ab/nsp31228P1228TCcaAca11AY.50.000021
ORF1ab/nsp31228P1228ICCaATa11AY.50.000021
ORF1ab/nsp31228P1228SCcaTca11AY.570.000656
ORF1ab/nsp31228P1228SCcaTca11AY.620.000436
ORF1ab/nsp31228P1228QcCacAa11AY.620.000436
ORF1ab/nsp31228P1228ACcaGca11AY.630.000387
ORF1ab/nsp31228P1228SCcaTca11AY.650.000533
ORF1ab/nsp31228P1228delCCA---11AY.660.00107
ORF1ab/nsp31228P1228SCcaTca11AY.680.000274
ORF1ab/nsp31228P1228SCcaTca11AY.740.000116
ORF1ab/nsp31228P1228delCCA---11AY.740.000116
ORF1ab/nsp31228P1228SCcaTca11AY.75.10.00018
ORF1ab/nsp31228P1228SCcaTca11AY.80.000606
ORF1ab/nsp31228P1228ICCaATa11AY.98.10.000048
ORF1ab/nsp31228P1228delCCA---11AY.990.001049
ORF1ab/nsp31228P1228ACcaGca11B.10.000009
ORF1ab/nsp31228P1228SCcaTca11B.1.1.100.001115
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1010.01
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1010.01
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1480.008772
ORF1ab/nsp31228P1228delCCA---11B.1.1.1530.001095
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1570.000913
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1580.012195
ORF1ab/nsp31228P1228delCCA---11B.1.1.1590.004673
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1610.003534
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1630.007634
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1860.003436
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2040.00304
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2100.005714
ORF1ab/nsp31228P1228delCCA---11B.1.1.2140.000055
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2160.00089
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2170.003636
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2190.005
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2540.011236
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2650.003155
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2690.001353
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2800.003086
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2860.002899
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2970.002237
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2980.000862
ORF1ab/nsp31228P1228delCCA---11B.1.1.3040.002809
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3120.001912
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3160.000925
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3260.001761
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3330.001076
ORF1ab/nsp31228P1228delCCA---11B.1.1.3480.000796
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3510.002793
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3540.004386
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3540.004386
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3690.000446
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3740.002375
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3820.035714
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3970.002252
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4030.025641
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4090.002833
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4130.006897
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4140.142857
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4200.001006
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4290.004608
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4330.001425
ORF1ab/nsp31228P1228PccAccT11B.1.1.4340.000349
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4620.008621
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4670.019231
ORF1ab/nsp31228P1228SCcaTca11B.1.1.500.000679
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5070.008696
ORF1ab/nsp31228P1228LcCacTa11B.1.1.5150.02
ORF1ab/nsp31228P1228SCcaTca11B.1.1.520.012195
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5230.001563
ORF1ab/nsp31228P1228SCcaTca11B.1.1.530.013699
ORF1ab/nsp31228P1228LcCacTa11B.1.1.540.003021
ORF1ab/nsp31228P1228SCcaTca11B.1.1.80.003584
ORF1ab/nsp31228P1228LcCacTa11B.1.1.990.02381
ORF1ab/nsp31228P1228LcCacTa11B.1.1110.001175
ORF1ab/nsp31228P1228LcCacTa11B.1.1310.008772
ORF1ab/nsp31228P1228SCcaTca11B.1.1310.008772
ORF1ab/nsp31228P1228LcCacTa11B.1.1420.002899
ORF1ab/nsp31228P1228LcCacTa11B.1.1490.003425
ORF1ab/nsp31228P1228SCcaTca11B.1.1490.003425
ORF1ab/nsp31228P1228SCcaTca11B.1.1570.002985
ORF1ab/nsp31228P1228TCcaAca11B.1.1600.000031
ORF1ab/nsp31228P1228PccAccT11B.1.1600.000031
ORF1ab/nsp31228P1228LcCacTa11B.1.177.120.000152
ORF1ab/nsp31228P1228delCCA---11B.1.177.350.000691
ORF1ab/nsp31228P1228LcCacTa11B.1.177.350.000691
ORF1ab/nsp31228P1228SCcaTca11B.1.177.420.000894
ORF1ab/nsp31228P1228SCcaTca11B.1.177.440.000519
ORF1ab/nsp31228P1228SCcaTca11B.1.177.530.002392
ORF1ab/nsp31228P1228SCcaTca11B.1.177.540.000606
ORF1ab/nsp31228P1228LcCacTa11B.1.177.550.002331
ORF1ab/nsp31228P1228SCcaTca11B.1.177.570.000281
ORF1ab/nsp31228P1228SCcaTca11B.1.177.580.001332
ORF1ab/nsp31228P1228SCcaTca11B.1.177.60.000977
ORF1ab/nsp31228P1228LcCacTa11B.1.177.600.000218
ORF1ab/nsp31228P1228SCcaTca11B.1.177.600.000218
ORF1ab/nsp31228P1228delCCA---11B.1.177.620.001192
ORF1ab/nsp31228P1228LcCacTa11B.1.177.650.000665
ORF1ab/nsp31228P1228QcCacAa11B.1.177.70.000165
ORF1ab/nsp31228P1228LcCacTa11B.1.177.750.001041
ORF1ab/nsp31228P1228LcCacTa11B.1.177.760.002494
ORF1ab/nsp31228P1228SCcaTca11B.1.177.770.000726
ORF1ab/nsp31228P1228TCcaAca11B.1.177.770.000726
ORF1ab/nsp31228P1228PccAccC11B.1.177.80.000752
ORF1ab/nsp31228P1228LcCacTa11B.1.177.820.000477
ORF1ab/nsp31228P1228delCCA---11B.1.177.830.001481
ORF1ab/nsp31228P1228LcCacTa11B.1.177.840.006667
ORF1ab/nsp31228P1228LcCacTa11B.1.1790.003759
ORF1ab/nsp31228P1228LcCacTa11B.1.1940.04
ORF1ab/nsp31228P1228QcCacAa11B.1.20.000009
ORF1ab/nsp31228P1228delCCA---11B.1.20.000009
ORF1ab/nsp31228P1228SCcaTca11B.1.214.20.0006
ORF1ab/nsp31228P1228SCcaTca11B.1.221.30.000833
ORF1ab/nsp31228P1228LcCacTa11B.1.2230.002778
ORF1ab/nsp31228P1228SCcaTca11B.1.230.006061
ORF1ab/nsp31228P1228LcCacTa11B.1.2320.000537
ORF1ab/nsp31228P1228LcCacTa11B.1.2360.002053
ORF1ab/nsp31228P1228SCcaTca11B.1.2390.001221
ORF1ab/nsp31228P1228TCcaAca11B.1.2390.001221
ORF1ab/nsp31228P1228PccAccG11B.1.2400.000216
ORF1ab/nsp31228P1228TCcaAca11B.1.2430.00007
ORF1ab/nsp31228P1228PccAccG11B.1.2430.00007
ORF1ab/nsp31228P1228LcCacTa11B.1.2470.014925
ORF1ab/nsp31228P1228SCcaTca11B.1.258.110.000396
ORF1ab/nsp31228P1228SCcaTca11B.1.258.140.00098
ORF1ab/nsp31228P1228del1ccAcc-11B.1.258.140.00098
ORF1ab/nsp31228P1228LcCacTa11B.1.258.220.002667
ORF1ab/nsp31228P1228LcCacTa11B.1.2600.003344
ORF1ab/nsp31228P1228LcCacTa11B.1.2790.000514
ORF1ab/nsp31228P1228SCcaTca11B.1.2790.000514
ORF1ab/nsp31228P1228PccAccG11B.1.2910.019231
ORF1ab/nsp31228P1228LcCacTa11B.1.3010.005917
ORF1ab/nsp31228P1228QcCacAa11B.1.3110.000275
ORF1ab/nsp31228P1228SCcaTca11B.1.3190.003049
ORF1ab/nsp31228P1228SCcaTca11B.1.3360.002439
ORF1ab/nsp31228P1228LcCacTa11B.1.3400.004292
ORF1ab/nsp31228P1228PccAccG11B.1.3510.00003
ORF1ab/nsp31228P1228SCcaTca11B.1.351.20.000303
ORF1ab/nsp31228P1228SCcaTca11B.1.351.50.0006
ORF1ab/nsp31228P1228LcCacTa11B.1.36.160.001425
ORF1ab/nsp31228P1228LcCacTa11B.1.36.170.000494
ORF1ab/nsp31228P1228SCcaTca11B.1.36.170.000494
ORF1ab/nsp31228P1228LcCacTa11B.1.36.180.00042
ORF1ab/nsp31228P1228SCcaTca11B.1.36.360.000602
ORF1ab/nsp31228P1228LcCacTa11B.1.36.390.002217
ORF1ab/nsp31228P1228LcCacTa11B.1.3660.004878
ORF1ab/nsp31228P1228SCcaTca11B.1.3670.000792
ORF1ab/nsp31228P1228LcCacTa11B.1.3780.006849
ORF1ab/nsp31228P1228SCcaTca11B.1.3890.001002
ORF1ab/nsp31228P1228LcCacTa11B.1.3970.004854
ORF1ab/nsp31228P1228LcCacTa11B.1.3980.002976
ORF1ab/nsp31228P1228LcCacTa11B.1.4050.012346
ORF1ab/nsp31228P1228SCcaTca11B.1.4110.003704
ORF1ab/nsp31228P1228SCcaTca11B.1.4160.001269
ORF1ab/nsp31228P1228TCcaAca11B.1.4270.00005
ORF1ab/nsp31228P1228delCCA---11B.1.428.20.033333
ORF1ab/nsp31228P1228TCcaAca11B.1.4290.000024
ORF1ab/nsp31228P1228PccAccG11B.1.4290.000024
ORF1ab/nsp31228P1228LcCacTa11B.1.4320.011236
ORF1ab/nsp31228P1228LcCacTa11B.1.4360.001029
ORF1ab/nsp31228P1228SCcaTca11B.1.4380.006536
ORF1ab/nsp31228P1228LcCacTa11B.1.438.10.000107
ORF1ab/nsp31228P1228LcCacTa11B.1.4660.023256
ORF1ab/nsp31228P1228SCcaTca11B.1.4660.023256
ORF1ab/nsp31228P1228LcCacTa11B.1.4760.1
ORF1ab/nsp31228P1228LcCacTa11B.1.4800.002488
ORF1ab/nsp31228P1228SCcaTca11B.1.4990.00105
ORF1ab/nsp31228P1228LcCacTa11B.1.5040.03125
ORF1ab/nsp31228P1228LcCacTa11B.1.5090.000866
ORF1ab/nsp31228P1228LcCacTa11B.1.5300.007143
ORF1ab/nsp31228P1228LcCacTa11B.1.5380.008065
ORF1ab/nsp31228P1228SCcaTca11B.1.5450.014493
ORF1ab/nsp31228P1228del1ccAcc-11B.1.5460.003704
ORF1ab/nsp31228P1228LcCacTa11B.1.5500.013699
ORF1ab/nsp31228P1228LcCacTa11B.1.5540.004405
ORF1ab/nsp31228P1228LcCacTa11B.1.5580.004566
ORF1ab/nsp31228P1228LcCacTa11B.1.5650.00081
ORF1ab/nsp31228P1228LcCacTa11B.1.5680.001111
ORF1ab/nsp31228P1228SCcaTca11B.1.5740.002151
ORF1ab/nsp31228P1228LcCacTa11B.1.5750.000303
ORF1ab/nsp31228P1228LcCacTa11B.1.5770.000687
ORF1ab/nsp31228P1228SCcaTca11B.1.5770.000687
ORF1ab/nsp31228P1228LcCacTa11B.1.5800.004065
ORF1ab/nsp31228P1228LcCacTa11B.1.5810.009434
ORF1ab/nsp31228P1228SCcaTca11B.1.5810.009434
ORF1ab/nsp31228P1228LcCacTa11B.1.5900.004545
ORF1ab/nsp31228P1228LcCacTa11B.1.5990.00365
ORF1ab/nsp31228P1228SCcaTca11B.1.6040.017241
ORF1ab/nsp31228P1228LcCacTa11B.1.6120.002653
ORF1ab/nsp31228P1228SCcaTca11B.1.6120.002653
ORF1ab/nsp31228P1228TCcaAca11B.1.617.20.000004
ORF1ab/nsp31228P1228ICCaATa11B.1.617.20.000004
ORF1ab/nsp31228P1228del2CCa--a11B.1.617.20.000004
ORF1ab/nsp31228P1228QcCacAa11B.1.619.10.000641
ORF1ab/nsp31228P1228LcCacTa11B.1.6200.000946
ORF1ab/nsp31228P1228LcCacTa11B.1.6270.00202
ORF1ab/nsp31228P1228PccAccG11B.1.6280.000352
ORF1ab/nsp31228P1228delCCA---11B.1.6300.005236
ORF1ab/nsp31228P1228SCcaTca11B.1.6310.003367
ORF1ab/nsp31228P1228LcCacTa11B.1.6320.006711
ORF1ab/nsp31228P1228LcCacTa11B.1.6340.003425
ORF1ab/nsp31228P1228LcCacTa11B.1.810.021277
ORF1ab/nsp31228P1228LcCacTa11B.370.028571
ORF1ab/nsp31228P1228LcCacTa11B.450.003831
ORF1ab/nsp31228P1228LcCacTa11B.60.00091
ORF1ab/nsp31228P1228SCcaTca11C.10.002392
ORF1ab/nsp31228P1228delCCA---11C.20.016129
ORF1ab/nsp31228P1228del2CCa--a11C.20.016129
ORF1ab/nsp31228P1228SCcaTca11C.2.10.006667
ORF1ab/nsp31228P1228LcCacTa11C.300.001727
ORF1ab/nsp31228P1228SCcaTca11C.310.017857
ORF1ab/nsp31228P1228ECCaGAa11C.350.000774
ORF1ab/nsp31228P1228LcCacTa11C.360.000911
ORF1ab/nsp31228P1228SCcaTca11C.90.030303
ORF1ab/nsp31228P1228PccAccT11D.20.000075
ORF1ab/nsp31228P1228SCcaTca11N.60.007092
ORF1ab/nsp31228P1228delCCA---11P.10.000016
ORF1ab/nsp31228P1228SCcaTca11P.1.120.000484
ORF1ab/nsp31228P1228TCcaAca11P.1.140.000048
ORF1ab/nsp31228P1228ACcaGca11P.1.150.000232
ORF1ab/nsp31228P1228LcCacTa11P.30.001595
ORF1ab/nsp31228P1228LcCacTa11P.70.004367
ORF1ab/nsp31228P1228LcCacTa11Q.10.000126
ORF1ab/nsp31228P1228TCcaAca11Q.10.000126
ORF1ab/nsp31228P1228LcCacTa11Q.30.000145
ORF1ab/nsp31228P1228SCcaTca11Q.40.000455
ORF1ab/nsp31228P1228LcCacTa11Q.70.001111
ORF1ab/nsp31228P1228PccAccG11R.10.00009