CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1228

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31228P1228LP2046LnonsyncCacTa241298924097350.9986516401-6403
ORF1ab/nsp31228P1228LP2046LnonsynCCaTTa241298931420.001302126401-6403
ORF1ab/nsp31228P1228LP2046LnonsyncCAcTG2412989780.00003232516401-6403
ORF1ab/nsp31228P1228LP2046LnonsyncCAcTT2412989340.00001409046401-6403
ORF1ab/nsp31228P1228SP2046SnonsynCcaTca4365436516401-6403
ORF1ab/nsp31228P1228RP2046RnonsyncCacGa41041016401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccT2351250.5319156401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccG235970.4127666401-6403
ORF1ab/nsp31228P1228PP2046PsynccAccC235130.05531916401-6403
ORF1ab/nsp31228P1228TP2046TnonsynCcaAca1281270.9921886401-6403
ORF1ab/nsp31228P1228TP2046TnonsynCcAAcT12810.00781256401-6403
ORF1ab/nsp31228P1228delP2046deldelCCA---929216401-6403
ORF1ab/nsp31228P1228IP2046InonsynCCaATa393916401-6403
ORF1ab/nsp31228P1228QP2046QnonsyncCacAa272716401-6403
ORF1ab/nsp31228P1228AP2046AnonsynCcaGca232316401-6403
ORF1ab/nsp31228P1228del2P2046del2delCCa--a222216401-6403
ORF1ab/nsp31228P1228del1P2046del1delccAcc-4416401-6403
ORF1ab/nsp31228P1228EP2046EnonsynCCaGAa1116401-6403

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31228P1228LcCacTa24097352412989All0.46089
ORF1ab/nsp31228P1228LCCaTTa31422412989All0.000601
ORF1ab/nsp31228P1228LcCAcTG782412989All0.000015
ORF1ab/nsp31228P1228LcCAcTT342412989All0.000007
ORF1ab/nsp31228P1228LcCacTa633197633680AY.40.985522
ORF1ab/nsp31228P1228LCCaTTa468633680AY.40.000728
ORF1ab/nsp31228P1228LcCAcTG13633680AY.40.00002
ORF1ab/nsp31228P1228LcCAcTT2633680AY.40.000003
ORF1ab/nsp31228P1228LcCacTa222913223273B.1.617.20.83936
ORF1ab/nsp31228P1228LCCaTTa351223273B.1.617.20.001322
ORF1ab/nsp31228P1228LcCAcTT8223273B.1.617.20.00003
ORF1ab/nsp31228P1228LcCAcTG1223273B.1.617.20.000004
ORF1ab/nsp31228P1228LcCacTa220276220436AY.430.975925
ORF1ab/nsp31228P1228LCCaTTa114220436AY.430.000505
ORF1ab/nsp31228P1228LcCAcTG35220436AY.430.000155
ORF1ab/nsp31228P1228LcCAcTT11220436AY.430.000049
ORF1ab/nsp31228P1228LcCacTa164573164693AY.250.989877
ORF1ab/nsp31228P1228LCCaTTa119164693AY.250.000716
ORF1ab/nsp31228P1228LcCAcTT1164693AY.250.000006
ORF1ab/nsp31228P1228LcCacTa160682161210AY.440.978033
ORF1ab/nsp31228P1228LCCaTTa526161210AY.440.003202
ORF1ab/nsp31228P1228LcCAcTG1161210AY.440.000006
ORF1ab/nsp31228P1228LcCAcTT1161210AY.440.000006
ORF1ab/nsp31228P1228LcCacTa159154159439AY.1030.988197
ORF1ab/nsp31228P1228LCCaTTa266159439AY.1030.001652
ORF1ab/nsp31228P1228LcCAcTG19159439AY.1030.000118
ORF1ab/nsp31228P1228LcCacTa9945999544AY.30.989258
ORF1ab/nsp31228P1228LCCaTTa8399544AY.30.000826
ORF1ab/nsp31228P1228LcCAcTT299544AY.30.00002
ORF1ab/nsp31228P1228LcCacTa6334763368AY.290.999211
ORF1ab/nsp31228P1228LCCaTTa2163368AY.290.000331
ORF1ab/nsp31228P1228LcCacTa4769547848AY.50.984864
ORF1ab/nsp31228P1228LCCaTTa15347848AY.50.003159
ORF1ab/nsp31228P1228LcCacTa4471644944AY.4.20.969831
ORF1ab/nsp31228P1228LCCaTTa22644944AY.4.20.004902
ORF1ab/nsp31228P1228LcCAcTG244944AY.4.20.000043
ORF1ab/nsp31228P1228LcCacTa3969039761AY.390.980799
ORF1ab/nsp31228P1228LCCaTTa6939761AY.390.001705
ORF1ab/nsp31228P1228LcCAcTT239761AY.390.000049
ORF1ab/nsp31228P1228LcCacTa3754837592AY.1020.995546
ORF1ab/nsp31228P1228LCCaTTa4437592AY.1020.001167
ORF1ab/nsp31228P1228LcCacTa2779028033AY.1190.981216
ORF1ab/nsp31228P1228LCCaTTa24328033AY.1190.00858
ORF1ab/nsp31228P1228LcCacTa2652026530AY.1200.985984
ORF1ab/nsp31228P1228LCCaTTa526530AY.1200.000186
ORF1ab/nsp31228P1228LcCAcTG426530AY.1200.000149
ORF1ab/nsp31228P1228LcCAcTT126530AY.1200.000037
ORF1ab/nsp31228P1228LcCacTa2543825467AY.200.988651
ORF1ab/nsp31228P1228LCCaTTa2925467AY.200.001127
ORF1ab/nsp31228P1228LcCacTa2459924609AY.39.10.974449
ORF1ab/nsp31228P1228LCCaTTa1024609AY.39.10.000396
ORF1ab/nsp31228P1228LcCacTa2456124566AY.420.988092
ORF1ab/nsp31228P1228LCCaTTa524566AY.420.000201
ORF1ab/nsp31228P1228LcCacTa2401624024AY.60.987744
ORF1ab/nsp31228P1228LCCaTTa524024AY.60.000206
ORF1ab/nsp31228P1228LcCAcTT224024AY.60.000082
ORF1ab/nsp31228P1228LcCAcTG124024AY.60.000041
ORF1ab/nsp31228P1228LcCacTa2157621588AY.1000.992639
ORF1ab/nsp31228P1228LCCaTTa1121588AY.1000.000506
ORF1ab/nsp31228P1228LcCAcTT121588AY.1000.000046
ORF1ab/nsp31228P1228LcCacTa2034420368AY.98.10.985277
ORF1ab/nsp31228P1228LCCaTTa2420368AY.98.10.001162
ORF1ab/nsp31228P1228LcCacTa1575315757AY.1180.986906
ORF1ab/nsp31228P1228LCCaTTa415757AY.1180.000251
ORF1ab/nsp31228P1228LcCacTa1473614748AY.330.98404
ORF1ab/nsp31228P1228LCCaTTa1214748AY.330.000801
ORF1ab/nsp31228P1228LcCacTa1395413957AY.230.973286
ORF1ab/nsp31228P1228LCCaTTa313957AY.230.000209
ORF1ab/nsp31228P1228LcCacTa1375213753AY.46.60.992996
ORF1ab/nsp31228P1228LCCaTTa113753AY.46.60.000072
ORF1ab/nsp31228P1228LcCacTa1224912250AY.980.967612
ORF1ab/nsp31228P1228LCCaTTa112250AY.980.000079
ORF1ab/nsp31228P1228LcCacTa1166611666AY.3.10.994629
ORF1ab/nsp31228P1228LcCacTa1157011579AY.1170.977857
ORF1ab/nsp31228P1228LCCaTTa911579AY.1170.000761
ORF1ab/nsp31228P1228LcCacTa1079910804AY.99.20.995208
ORF1ab/nsp31228P1228LCCaTTa510804AY.99.20.000461
ORF1ab/nsp31228P1228LcCacTa1020410204AY.340.989431
ORF1ab/nsp31228P1228LcCacTa93529357AY.460.973356
ORF1ab/nsp31228P1228LCCaTTa59357AY.460.00052
ORF1ab/nsp31228P1228LcCacTa92469260AY.4.50.993873
ORF1ab/nsp31228P1228LCCaTTa149260AY.4.50.001505
ORF1ab/nsp31228P1228LcCacTa88358835AY.7.10.995717
ORF1ab/nsp31228P1228LcCacTa77307802AY.450.940618
ORF1ab/nsp31228P1228LCCaTTa727802AY.450.008761
ORF1ab/nsp31228P1228LcCacTa73037304AY.1210.988227
ORF1ab/nsp31228P1228LCCaTTa17304AY.1210.000135
ORF1ab/nsp31228P1228LcCacTa68636868AY.1130.977218
ORF1ab/nsp31228P1228LCCaTTa56868AY.1130.000712
ORF1ab/nsp31228P1228LcCacTa66696676AY.360.988439
ORF1ab/nsp31228P1228LCCaTTa76676AY.360.001037
ORF1ab/nsp31228P1228LcCacTa64906493AY.4.2.10.966925
ORF1ab/nsp31228P1228LCCaTTa36493AY.4.2.10.000447
ORF1ab/nsp31228P1228LcCacTa60306033AY.46.40.991939
ORF1ab/nsp31228P1228LCCaTTa36033AY.46.40.000494
ORF1ab/nsp31228P1228LcCacTa54725472AY.1100.616633
ORF1ab/nsp31228P1228LcCacTa53645378AY.1110.982418
ORF1ab/nsp31228P1228LCCaTTa145378AY.1110.002564
ORF1ab/nsp31228P1228LcCacTa50645066AY.70.992552
ORF1ab/nsp31228P1228LCCaTTa25066AY.70.000392
ORF1ab/nsp31228P1228LcCacTa49474948AY.46.50.981548
ORF1ab/nsp31228P1228LCCaTTa14948AY.46.50.000198
ORF1ab/nsp31228P1228LcCacTa45354535AY.29.11
ORF1ab/nsp31228P1228SCcaTca43654365All0.000835
ORF1ab/nsp31228P1228LcCacTa42634264AY.1140.985209
ORF1ab/nsp31228P1228LCCaTTa14264AY.1140.000231
ORF1ab/nsp31228P1228LcCacTa35833589AY.930.978427
ORF1ab/nsp31228P1228LCCaTTa53589AY.930.001365
ORF1ab/nsp31228P1228LcCAcTG13589AY.930.000273
ORF1ab/nsp31228P1228LcCacTa34683470AY.5.40.959602
ORF1ab/nsp31228P1228LCCaTTa23470AY.5.40.000553
ORF1ab/nsp31228P1228LcCacTa33723372AY.410.991182
ORF1ab/nsp31228P1228LcCacTa33423370AY.1160.958417
ORF1ab/nsp31228P1228LCCaTTa283370AY.1160.00803
ORF1ab/nsp31228P1228LcCacTa33173317AY.9.20.121832
ORF1ab/nsp31228P1228LcCacTa32943296AY.920.94628
ORF1ab/nsp31228P1228LCCaTTa23296AY.920.000575
ORF1ab/nsp31228P1228LcCacTa31793180AY.116.10.990034
ORF1ab/nsp31228P1228LCCaTTa13180AY.116.10.000311
ORF1ab/nsp31228P1228LcCacTa31303141AY.120.989254
ORF1ab/nsp31228P1228LCCaTTa113141AY.120.003477
ORF1ab/nsp31228P1228LcCacTa30853089AY.120.10.990369
ORF1ab/nsp31228P1228LCCaTTa43089AY.120.10.001284
ORF1ab/nsp31228P1228LcCacTa29452946AY.1060.986269
ORF1ab/nsp31228P1228LCCaTTa12946AY.1060.000335
ORF1ab/nsp31228P1228LcCacTa28832884AY.5.30.972672
ORF1ab/nsp31228P1228LCCaTTa12884AY.5.30.000337
ORF1ab/nsp31228P1228LcCacTa24842488AY.10.982984
ORF1ab/nsp31228P1228LCCaTTa42488AY.10.001583
ORF1ab/nsp31228P1228LcCacTa24262426AY.4.40.992635
ORF1ab/nsp31228P1228LcCacTa23962396AY.23.11
ORF1ab/nsp31228P1228LcCacTa23022302AY.850.98334
ORF1ab/nsp31228P1228LcCacTa22562256AY.940.998672
ORF1ab/nsp31228P1228LcCacTa22322233AY.840.976378
ORF1ab/nsp31228P1228LCCaTTa12233AY.840.000437
ORF1ab/nsp31228P1228LcCacTa21302130AY.1070.992544
ORF1ab/nsp31228P1228LcCacTa20202020AY.1010.990682
ORF1ab/nsp31228P1228LcCacTa19062002AY.120.2.10.949676
ORF1ab/nsp31228P1228LCCaTTa962002AY.120.2.10.047833
ORF1ab/nsp31228P1228SCcaTca19951995B.1.1.70.001786
ORF1ab/nsp31228P1228LcCacTa19441944AY.34.10.991331
ORF1ab/nsp31228P1228LcCacTa18001821AY.320.958466
ORF1ab/nsp31228P1228LCCaTTa211821AY.320.011182
ORF1ab/nsp31228P1228LcCacTa17741774AY.7.20.99217
ORF1ab/nsp31228P1228LcCacTa17421742B.1.1.70.001559
ORF1ab/nsp31228P1228LcCacTa14651465AY.46.20.93075
ORF1ab/nsp31228P1228LcCacTa14581459AY.1050.937621
ORF1ab/nsp31228P1228LcCAcTG11459AY.1050.000643
ORF1ab/nsp31228P1228LcCacTa14331435AY.900.980835
ORF1ab/nsp31228P1228LCCaTTa21435AY.900.001369
ORF1ab/nsp31228P1228LcCacTa13741374AY.39.1.10.995652
ORF1ab/nsp31228P1228LcCacTa13491349AY.4.10.994838
ORF1ab/nsp31228P1228LcCacTa13061306AY.1090.965976
ORF1ab/nsp31228P1228LcCacTa13011301AY.910.950329
ORF1ab/nsp31228P1228LcCacTa12681270AY.950.964992
ORF1ab/nsp31228P1228LcCAcTT21270AY.950.001522
ORF1ab/nsp31228P1228LcCacTa11721173AY.870.975853
ORF1ab/nsp31228P1228LCCaTTa11173AY.870.000833
ORF1ab/nsp31228P1228LcCacTa11691169AY.4.30.984007
ORF1ab/nsp31228P1228LcCacTa11411142AY.860.946888
ORF1ab/nsp31228P1228LCCaTTa11142AY.860.00083
ORF1ab/nsp31228P1228LcCacTa11311131B.1.351.30.991236
ORF1ab/nsp31228P1228LcCacTa10771077AY.880.952255
ORF1ab/nsp31228P1228LcCacTa10661066AY.46.30.995331
ORF1ab/nsp31228P1228LcCacTa10091013AY.470.031385
ORF1ab/nsp31228P1228LCCaTTa41013AY.470.000124
ORF1ab/nsp31228P1228LcCacTa953954AY.46.10.978439
ORF1ab/nsp31228P1228LCCaTTa1954AY.46.10.001027
ORF1ab/nsp31228P1228LcCacTa946948B.10.008665
ORF1ab/nsp31228P1228LCCaTTa2948B.10.000018
ORF1ab/nsp31228P1228LcCacTa935937AY.990.981112
ORF1ab/nsp31228P1228LCCaTTa2937AY.990.002099
ORF1ab/nsp31228P1228LcCacTa880880AY.800.993228
ORF1ab/nsp31228P1228LcCacTa867869AY.750.048571
ORF1ab/nsp31228P1228LCCaTTa2869AY.750.000112
ORF1ab/nsp31228P1228LcCacTa836837AY.770.942503
ORF1ab/nsp31228P1228LCCaTTa1837AY.770.001127
ORF1ab/nsp31228P1228LcCacTa808809AY.790.978208
ORF1ab/nsp31228P1228LCCaTTa1809AY.790.001211
ORF1ab/nsp31228P1228LcCacTa755755AY.1080.832415
ORF1ab/nsp31228P1228LcCacTa712712AY.120.20.915167
ORF1ab/nsp31228P1228LcCacTa700701AY.820.949796
ORF1ab/nsp31228P1228LCCaTTa1701AY.820.001357
ORF1ab/nsp31228P1228LcCacTa648649AY.39.20.998459
ORF1ab/nsp31228P1228LCCaTTa1649AY.39.20.001541
ORF1ab/nsp31228P1228LcCacTa638638AY.99.10.990683
ORF1ab/nsp31228P1228LcCacTa626626B.1.20.005512
ORF1ab/nsp31228P1228LcCacTa614614AY.730.408516
ORF1ab/nsp31228P1228LcCacTa610610AY.780.939908
ORF1ab/nsp31228P1228LcCacTa610610B.1.3620.939908
ORF1ab/nsp31228P1228LcCacTa582582AY.970.989796
ORF1ab/nsp31228P1228LcCacTa574574AY.830.989655
ORF1ab/nsp31228P1228LcCacTa555557B0.070936
ORF1ab/nsp31228P1228LCCaTTa2557B0.000256
ORF1ab/nsp31228P1228LcCacTa499499AY.1040.990079
ORF1ab/nsp31228P1228LcCacTa492492AY.680.134684
ORF1ab/nsp31228P1228LcCacTa491491L.10.935238
ORF1ab/nsp31228P1228LcCacTa482482AY.810.960159
ORF1ab/nsp31228P1228LcCacTa472472AY.210.895636
ORF1ab/nsp31228P1228LcCacTa467467AY.220.976987
ORF1ab/nsp31228P1228LcCacTa459459AY.960.952282
ORF1ab/nsp31228P1228LcCacTa453453AY.550.415596
ORF1ab/nsp31228P1228RcCacGa410410All0.000078
ORF1ab/nsp31228P1228SCcaTca404404B.1.6250.950588
ORF1ab/nsp31228P1228LcCacTa396397AY.5.20.975369
ORF1ab/nsp31228P1228LCCaTTa1397AY.5.20.002463
ORF1ab/nsp31228P1228LcCacTa381381AY.740.044062
ORF1ab/nsp31228P1228RcCacGa374374B.1.1.70.000335
ORF1ab/nsp31228P1228LcCacTa350350AY.540.033371
ORF1ab/nsp31228P1228SCcaTca329329B.1.1.2550.99697
ORF1ab/nsp31228P1228LcCacTa314316P.10.004947
ORF1ab/nsp31228P1228LCCaTTa2316P.10.000032
ORF1ab/nsp31228P1228LcCacTa300300AY.260.008493
ORF1ab/nsp31228P1228LcCacTa295295AY.580.267695
ORF1ab/nsp31228P1228LcCacTa293293AY.590.155191
ORF1ab/nsp31228P1228LcCacTa278278AY.190.31699
ORF1ab/nsp31228P1228LcCacTa266266AY.5.11
ORF1ab/nsp31228P1228LcCacTa247247AY.75.10.044537
ORF1ab/nsp31228P1228LcCacTa245245AY.91.10.995935
ORF1ab/nsp31228P1228PccAccT125235All0.000024
ORF1ab/nsp31228P1228PccAccG97235All0.000019
ORF1ab/nsp31228P1228PccAccC13235All0.000002
ORF1ab/nsp31228P1228LcCacTa232233AY.530.066705
ORF1ab/nsp31228P1228LCCaTTa1233AY.530.000288
ORF1ab/nsp31228P1228SCcaTca212212B.1.20.001867
ORF1ab/nsp31228P1228LcCacTa212212B.1.362.21
ORF1ab/nsp31228P1228LcCacTa202203AY.760.975845
ORF1ab/nsp31228P1228LCCaTTa1203AY.760.004831
ORF1ab/nsp31228P1228LcCacTa201201AY.890.985294
ORF1ab/nsp31228P1228SCcaTca199199B.10.001823
ORF1ab/nsp31228P1228LcCacTa193193AY.520.157166
ORF1ab/nsp31228P1228LcCacTa189189AY.1150.984375
ORF1ab/nsp31228P1228LcCacTa182182AY.620.079303
ORF1ab/nsp31228P1228LcCacTa182182AY.690.033974
ORF1ab/nsp31228P1228LcCacTa176176AY.640.104762
ORF1ab/nsp31228P1228LcCacTa158158AY.100.083731
ORF1ab/nsp31228P1228LcCacTa155156AY.670.071959
ORF1ab/nsp31228P1228LcCAcTT1156AY.670.000464
ORF1ab/nsp31228P1228LcCacTa150150AY.370.047408
ORF1ab/nsp31228P1228LcCacTa149149AY.560.239165
ORF1ab/nsp31228P1228LcCacTa148148AY.380.073889
ORF1ab/nsp31228P1228LcCacTa147147B.1.10.002667
ORF1ab/nsp31228P1228LcCacTa130130AY.630.05029
ORF1ab/nsp31228P1228TCcaAca127128All0.000024
ORF1ab/nsp31228P1228TCcAAcT1128All0
ORF1ab/nsp31228P1228LcCacTa128128AY.160.048595
ORF1ab/nsp31228P1228LcCacTa119119AY.140.010474
ORF1ab/nsp31228P1228LcCacTa119119B.1.5950.031054
ORF1ab/nsp31228P1228SCcaTca114114B.1.2580.007586
ORF1ab/nsp31228P1228LcCacTa104104AY.130.016742
ORF1ab/nsp31228P1228LcCacTa104104AY.570.068241
ORF1ab/nsp31228P1228LcCacTa9898AY.400.094503
ORF1ab/nsp31228P1228LcCacTa9595B.1.1770.001251
ORF1ab/nsp31228P1228delCCA---9292All0.000018
ORF1ab/nsp31228P1228LcCacTa8990AY.480.041395
ORF1ab/nsp31228P1228LCCaTTa190AY.480.000465
ORF1ab/nsp31228P1228PccAccT5888B.1.1.70.000052
ORF1ab/nsp31228P1228PccAccG2188B.1.1.70.000019
ORF1ab/nsp31228P1228PccAccC988B.1.1.70.000008
ORF1ab/nsp31228P1228LcCacTa8787B.1.3510.002586
ORF1ab/nsp31228P1228LcCacTa8585AY.700.017723
ORF1ab/nsp31228P1228LcCacTa8383AY.350.019343
ORF1ab/nsp31228P1228LcCacTa8080AY.610.008382
ORF1ab/nsp31228P1228SCcaTca7474B.1.4290.001741
ORF1ab/nsp31228P1228LcCacTa6969C.36.30.039138
ORF1ab/nsp31228P1228LcCacTa6565AY.710.030879
ORF1ab/nsp31228P1228LcCacTa6363AY.650.033582
ORF1ab/nsp31228P1228LcCacTa6363B.1.5250.007129
ORF1ab/nsp31228P1228LcCacTa6262AY.600.058161
ORF1ab/nsp31228P1228SCcaTca6262B.1.5260.001457
ORF1ab/nsp31228P1228SCcaTca6060B.1.2730.779221
ORF1ab/nsp31228P1228TCcaAca5859P.10.000914
ORF1ab/nsp31228P1228TCcAAcT159P.10.000016
ORF1ab/nsp31228P1228LcCacTa5858B.1.351.20.017549
ORF1ab/nsp31228P1228SCcaTca5858P.10.000914
ORF1ab/nsp31228P1228LcCacTa5656B.1.1.280.017429
ORF1ab/nsp31228P1228LcCacTa5555B.1.2580.00366
ORF1ab/nsp31228P1228LcCacTa5354AY.110.07095
ORF1ab/nsp31228P1228LCCaTTa154AY.110.001339
ORF1ab/nsp31228P1228LcCacTa5353B.1.1600.001653
ORF1ab/nsp31228P1228PccAccT4148B.1.20.000361
ORF1ab/nsp31228P1228PccAccG748B.1.20.000062
ORF1ab/nsp31228P1228SCcaTca4444B.1.10.000798
ORF1ab/nsp31228P1228SCcaTca4343B.1.1770.000566
ORF1ab/nsp31228P1228LcCacTa4141B.1.4270.00207
ORF1ab/nsp31228P1228SCcaTca4040AY.260.001132
ORF1ab/nsp31228P1228LcCacTa4040B.1.5260.00094
ORF1ab/nsp31228P1228ICCaATa3939All0.000007
ORF1ab/nsp31228P1228LcCacTa3737AY.490.118211
ORF1ab/nsp31228P1228LcCacTa3737AY.500.029576
ORF1ab/nsp31228P1228SCcaTca3737B.1.1.700.012619
ORF1ab/nsp31228P1228TCcaAca3535AY.640.020833
ORF1ab/nsp31228P1228LcCacTa3434AY.300.013455
ORF1ab/nsp31228P1228LcCacTa3131AY.240.013362
ORF1ab/nsp31228P1228LcCacTa3131B.1.1.5190.001231
ORF1ab/nsp31228P1228LcCacTa3131B.1.2420.584906
ORF1ab/nsp31228P1228LcCacTa3030AY.170.245902
ORF1ab/nsp31228P1228LcCacTa3030B.1.4390.177515
ORF1ab/nsp31228P1228SCcaTca2929B.1.438.10.003111
ORF1ab/nsp31228P1228LcCacTa2828B.1.1700.12069
ORF1ab/nsp31228P1228QcCacAa2727All0.000005
ORF1ab/nsp31228P1228LcCacTa2727AY.90.001825
ORF1ab/nsp31228P1228LcCacTa2727B.1.6090.012943
ORF1ab/nsp31228P1228LcCacTa2525B.1.4290.000588
ORF1ab/nsp31228P1228LcCacTa2525C.370.002902
ORF1ab/nsp31228P1228ACcaGca2323All0.000004
ORF1ab/nsp31228P1228SCcaTca2323B.1.1.5190.000913
ORF1ab/nsp31228P1228SCcaTca2323B.1.1600.000717
ORF1ab/nsp31228P1228LcCacTa2323C.350.017802
ORF1ab/nsp31228P1228del2CCa--a2222All0.000004
ORF1ab/nsp31228P1228LcCacTa2222AY.510.02
ORF1ab/nsp31228P1228LcCacTa2222P.1.70.007024
ORF1ab/nsp31228P1228LcCacTa2121AY.280.039698
ORF1ab/nsp31228P1228LcCacTa2121B.1.360.003064
ORF1ab/nsp31228P1228RcCacGa2020AY.440.000122
ORF1ab/nsp31228P1228del2CCa--a2020AY.46.50.003968
ORF1ab/nsp31228P1228LcCacTa2020AY.9.10.001674
ORF1ab/nsp31228P1228LcCacTa2020B.1.1.980.37037
ORF1ab/nsp31228P1228SCcaTca2020B.1.177.750.020812
ORF1ab/nsp31228P1228LcCacTa2020B.1.6210.00177
ORF1ab/nsp31228P1228LcCacTa1919B.1.1.3180.005733
ORF1ab/nsp31228P1228SCcaTca1919B.1.617.20.000072
ORF1ab/nsp31228P1228SCcaTca1818AY.470.00056
ORF1ab/nsp31228P1228LcCacTa1818B.1.177.190.025751
ORF1ab/nsp31228P1228SCcaTca1818B.1.6210.001593
ORF1ab/nsp31228P1228SCcaTca1818B.1.621.10.009105
ORF1ab/nsp31228P1228PccAccG1717B.1.5960.001481
ORF1ab/nsp31228P1228LcCacTa1717B.1.617.10.002192
ORF1ab/nsp31228P1228SCcaTca1717B.1.6370.001242
ORF1ab/nsp31228P1228LcCacTa1616AY.80.009697
ORF1ab/nsp31228P1228LcCacTa1616B.1.1.1530.017525
ORF1ab/nsp31228P1228delCCA---1616B.1.617.20.00006
ORF1ab/nsp31228P1228SCcaTca1616R.10.00144
ORF1ab/nsp31228P1228LcCacTa1515B.1.362.11
ORF1ab/nsp31228P1228SCcaTca1515P.1.70.004789
ORF1ab/nsp31228P1228SCcaTca1414B.1.3510.000416
ORF1ab/nsp31228P1228SCcaTca1313AH.30.04943
ORF1ab/nsp31228P1228delCCA---1313AY.1000.000598
ORF1ab/nsp31228P1228LcCacTa1313AY.660.013904
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.2140.000721
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.440.031325
ORF1ab/nsp31228P1228LcCacTa1313B.1.1.5260.046099
ORF1ab/nsp31228P1228LcCacTa1313B.1.5170.005551
ORF1ab/nsp31228P1228LcCacTa1212AY.270.000777
ORF1ab/nsp31228P1228ICCaATa1212AY.40.000019
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.2220.002448
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.4450.444444
ORF1ab/nsp31228P1228LcCacTa1212B.1.2210.000852
ORF1ab/nsp31228P1228SCcaTca1212B.1.258.170.001248
ORF1ab/nsp31228P1228LcCacTa1212B.1.6280.004228
ORF1ab/nsp31228P1228LcCacTa1111A.20.00728
ORF1ab/nsp31228P1228LcCacTa1111AY.720.014966
ORF1ab/nsp31228P1228LcCacTa1111B.1.5760.009973
ORF1ab/nsp31228P1228LcCacTa1111P.1.140.000526
ORF1ab/nsp31228P1228LcCacTa1010AY.16.10.004699
ORF1ab/nsp31228P1228delCCA---1010AY.440.000061
ORF1ab/nsp31228P1228SCcaTca1010B.1.1.630.003858
ORF1ab/nsp31228P1228SCcaTca1010B.1.4360.010288
ORF1ab/nsp31228P1228LcCacTa1010B.1.5960.000871
ORF1ab/nsp31228P1228SCcaTca99B.1.1.250.005117
ORF1ab/nsp31228P1228LcCacTa99B.1.1.2840.000967
ORF1ab/nsp31228P1228ACcaGca99B.1.1.70.000008
ORF1ab/nsp31228P1228PccAccT99B.1.4270.000454
ORF1ab/nsp31228P1228ACcaGca99B.1.4280.009184
ORF1ab/nsp31228P1228LcCacTa99B.1.5610.003573
ORF1ab/nsp31228P1228LcCacTa99Q.80.001484
ORF1ab/nsp31228P1228LcCacTa88B.1.1.2220.001632
ORF1ab/nsp31228P1228SCcaTca88B.1.1.3180.002414
ORF1ab/nsp31228P1228delCCA---88B.1.1.70.000007
ORF1ab/nsp31228P1228PccAccG58B.1.1770.000066
ORF1ab/nsp31228P1228PccAccT38B.1.1770.00004
ORF1ab/nsp31228P1228SCcaTca88B.1.3690.002282
ORF1ab/nsp31228P1228SCcaTca88B.1.6230.004292
ORF1ab/nsp31228P1228LcCacTa88B.1.6230.004292
ORF1ab/nsp31228P1228LcCacTa88B.400.002914
ORF1ab/nsp31228P1228PccAccG88P.10.000126
ORF1ab/nsp31228P1228SCcaTca88Q.10.001011
ORF1ab/nsp31228P1228SCcaTca77AY.270.000453
ORF1ab/nsp31228P1228SCcaTca77AY.350.001631
ORF1ab/nsp31228P1228ICCaATa77AY.440.000043
ORF1ab/nsp31228P1228RcCacGa77B.1.1.2650.022082
ORF1ab/nsp31228P1228LcCacTa77B.1.177.40.001477
ORF1ab/nsp31228P1228SCcaTca77B.1.2210.000497
ORF1ab/nsp31228P1228SCcaTca77B.1.2340.000924
ORF1ab/nsp31228P1228LcCacTa77B.1.258.170.000728
ORF1ab/nsp31228P1228LcCacTa77B.1.3490.005004
ORF1ab/nsp31228P1228SCcaTca77B.1.5250.000792
ORF1ab/nsp31228P1228LcCacTa77B.1.6370.000512
ORF1ab/nsp31228P1228LcCacTa66AY.20.002137
ORF1ab/nsp31228P1228SCcaTca66AY.610.000629
ORF1ab/nsp31228P1228LcCacTa66B.1.1.1700.007481
ORF1ab/nsp31228P1228LcCacTa66B.1.1.370.001157
ORF1ab/nsp31228P1228LcCacTa66B.1.1.4320.007595
ORF1ab/nsp31228P1228TCcaAca66B.1.1.70.000005
ORF1ab/nsp31228P1228LcCacTa66B.1.1390.004399
ORF1ab/nsp31228P1228SCcaTca66B.1.177.860.001101
ORF1ab/nsp31228P1228SCcaTca66B.1.2430.000418
ORF1ab/nsp31228P1228SCcaTca66B.1.3110.001647
ORF1ab/nsp31228P1228LcCacTa66B.1.36.80.006
ORF1ab/nsp31228P1228LcCacTa66B.1.3690.001711
ORF1ab/nsp31228P1228LcCacTa66B.1.466.20.002347
ORF1ab/nsp31228P1228SCcaTca66B.1.5960.000523
ORF1ab/nsp31228P1228SCcaTca66C.370.000696
ORF1ab/nsp31228P1228PccAccG66P.1.150.001394
ORF1ab/nsp31228P1228LcCacTa66P.20.00112
ORF1ab/nsp31228P1228LcCacTa55A0.001935
ORF1ab/nsp31228P1228SCcaTca55A.210.01385
ORF1ab/nsp31228P1228LcCacTa55A.270.008278
ORF1ab/nsp31228P1228SCcaTca55AY.590.002648
ORF1ab/nsp31228P1228SCcaTca55AY.90.000338
ORF1ab/nsp31228P1228SCcaTca55B0.000639
ORF1ab/nsp31228P1228PccAccT45B.10.000037
ORF1ab/nsp31228P1228PccAccG15B.10.000009
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1380.030303
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1760.002197
ORF1ab/nsp31228P1228SCcaTca55B.1.1.2140.000277
ORF1ab/nsp31228P1228LcCacTa55B.1.1.250.002843
ORF1ab/nsp31228P1228LcCacTa55B.1.1.330.002104
ORF1ab/nsp31228P1228LcCacTa55B.1.1.3480.003981
ORF1ab/nsp31228P1228SCcaTca55B.1.1.370.000964
ORF1ab/nsp31228P1228SCcaTca55B.1.1280.003177
ORF1ab/nsp31228P1228TCcaAca55B.1.1770.000066
ORF1ab/nsp31228P1228LcCacTa55B.1.177.320.006748
ORF1ab/nsp31228P1228LcCacTa55B.1.2400.001078
ORF1ab/nsp31228P1228SCcaTca55B.1.2760.084746
ORF1ab/nsp31228P1228LcCacTa55B.1.3750.004098
ORF1ab/nsp31228P1228SCcaTca55B.1.4200.052083
ORF1ab/nsp31228P1228LcCacTa55B.1.4740.009506
ORF1ab/nsp31228P1228SCcaTca55B.1.5650.004052
ORF1ab/nsp31228P1228QcCacAa55B.1.5960.000436
ORF1ab/nsp31228P1228LcCacTa55B.1.619.10.003207
ORF1ab/nsp31228P1228LcCacTa55P.1.120.00242
ORF1ab/nsp31228P1228SCcaTca55Q.80.000825
ORF1ab/nsp31228P1228del1ccAcc-44All0.000001
ORF1ab/nsp31228P1228ICCaATa44AY.1030.000025
ORF1ab/nsp31228P1228delCCA---44AY.40.000006
ORF1ab/nsp31228P1228SCcaTca44AY.510.003636
ORF1ab/nsp31228P1228SCcaTca44AY.750.000224
ORF1ab/nsp31228P1228SCcaTca44AY.9.10.000335
ORF1ab/nsp31228P1228SCcaTca44AY.9.20.000147
ORF1ab/nsp31228P1228QcCacAa44B.10.000037
ORF1ab/nsp31228P1228TCcaAca44B.1.10.000073
ORF1ab/nsp31228P1228PccAccG34B.1.10.000054
ORF1ab/nsp31228P1228PccAccC14B.1.10.000018
ORF1ab/nsp31228P1228LcCacTa44B.1.1.1760.001757
ORF1ab/nsp31228P1228LcCacTa44B.1.1.1920.009238
ORF1ab/nsp31228P1228LcCacTa44B.1.1.2200.007435
ORF1ab/nsp31228P1228SCcaTca44B.1.1.280.001245
ORF1ab/nsp31228P1228LcCacTa44B.1.1.3170.001647
ORF1ab/nsp31228P1228SCcaTca44B.1.1.390.002039
ORF1ab/nsp31228P1228LcCacTa44B.1.1.3980.012903
ORF1ab/nsp31228P1228LcCacTa44B.1.1.4340.001394
ORF1ab/nsp31228P1228LcCacTa44B.1.1.480.011494
ORF1ab/nsp31228P1228QcCacAa44B.1.1.70.000004
ORF1ab/nsp31228P1228SCcaTca44B.1.177.120.000607
ORF1ab/nsp31228P1228LcCacTa44B.1.177.730.002265
ORF1ab/nsp31228P1228LcCacTa44B.1.177.870.002911
ORF1ab/nsp31228P1228LcCacTa44B.1.2140.014652
ORF1ab/nsp31228P1228LcCacTa44B.1.2430.000278
ORF1ab/nsp31228P1228TCcaAca44B.1.2580.000266
ORF1ab/nsp31228P1228QcCacAa44B.1.2580.000266
ORF1ab/nsp31228P1228LcCacTa44B.1.2650.005083
ORF1ab/nsp31228P1228LcCacTa44B.1.3110.001098
ORF1ab/nsp31228P1228SCcaTca44B.1.360.000584
ORF1ab/nsp31228P1228LcCacTa44B.1.4000.001716
ORF1ab/nsp31228P1228SCcaTca44B.1.4270.000202
ORF1ab/nsp31228P1228PccAccG44B.1.5250.000453
ORF1ab/nsp31228P1228PccAccT44B.1.5260.000094
ORF1ab/nsp31228P1228SCcaTca44B.1.6090.001918
ORF1ab/nsp31228P1228SCcaTca44B.1.617.30.01194
ORF1ab/nsp31228P1228LcCacTa44P.1.10.001271
ORF1ab/nsp31228P1228LcCacTa44P.1.130.003594
ORF1ab/nsp31228P1228LcCacTa44P.1.150.000929
ORF1ab/nsp31228P1228LcCacTa44P.1.170.000647
ORF1ab/nsp31228P1228PccAccG44P.20.000747
ORF1ab/nsp31228P1228LcCacTa33A.10.000846
ORF1ab/nsp31228P1228SCcaTca33AY.130.000483
ORF1ab/nsp31228P1228SCcaTca33AY.140.000264
ORF1ab/nsp31228P1228LcCacTa33AY.150.006667
ORF1ab/nsp31228P1228ICCaATa33AY.250.000018
ORF1ab/nsp31228P1228SCcaTca33AY.250.000018
ORF1ab/nsp31228P1228RcCacGa33AY.40.000005
ORF1ab/nsp31228P1228SCcaTca33AY.540.000286
ORF1ab/nsp31228P1228SCcaTca33AY.670.001393
ORF1ab/nsp31228P1228PccAccG33AY.700.000626
ORF1ab/nsp31228P1228LcCacTa33AZ.50.010526
ORF1ab/nsp31228P1228delCCA---33B.10.000027
ORF1ab/nsp31228P1228TCcaAca33B.10.000027
ORF1ab/nsp31228P1228delCCA---33B.1.10.000054
ORF1ab/nsp31228P1228LcCacTa33B.1.1.1210.007282
ORF1ab/nsp31228P1228LcCacTa33B.1.1.2910.002227
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3060.001315
ORF1ab/nsp31228P1228LcCacTa33B.1.1.3160.002775
ORF1ab/nsp31228P1228LcCacTa33B.1.1.3260.005282
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3480.002389
ORF1ab/nsp31228P1228LcCacTa33B.1.1.4130.02069
ORF1ab/nsp31228P1228LcCacTa33B.1.1.4480.006098
ORF1ab/nsp31228P1228PccAccG23B.1.1.5190.000079
ORF1ab/nsp31228P1228PccAccT13B.1.1.5190.00004
ORF1ab/nsp31228P1228LcCacTa33B.1.1570.008955
ORF1ab/nsp31228P1228LcCacTa33B.1.160.220.02027
ORF1ab/nsp31228P1228LcCacTa33B.1.177.440.001557
ORF1ab/nsp31228P1228LcCacTa33B.1.177.570.000843
ORF1ab/nsp31228P1228LcCacTa33B.1.177.70.000495
ORF1ab/nsp31228P1228LcCacTa33B.1.177.860.00055
ORF1ab/nsp31228P1228SCcaTca33B.1.177.870.002183
ORF1ab/nsp31228P1228SCcaTca33B.1.1950.015075
ORF1ab/nsp31228P1228LcCacTa33B.1.2080.12
ORF1ab/nsp31228P1228LcCacTa33B.1.214.20.001799
ORF1ab/nsp31228P1228LcCacTa33B.1.3350.030928
ORF1ab/nsp31228P1228LcCacTa33B.1.36.100.014354
ORF1ab/nsp31228P1228LcCacTa33B.1.36.290.001552
ORF1ab/nsp31228P1228SCcaTca33B.1.36.290.001552
ORF1ab/nsp31228P1228LcCacTa33B.1.4040.003906
ORF1ab/nsp31228P1228LcCacTa33B.1.4590.012245
ORF1ab/nsp31228P1228LcCacTa33B.1.5640.001278
ORF1ab/nsp31228P1228PccAccG33B.1.5750.00091
ORF1ab/nsp31228P1228LcCacTa33B.1.6000.017544
ORF1ab/nsp31228P1228LcCacTa33B.1.6040.051724
ORF1ab/nsp31228P1228RcCacGa33B.1.617.20.000011
ORF1ab/nsp31228P1228LcCacTa33B.1.621.10.001517
ORF1ab/nsp31228P1228LcCacTa33B.550.00885
ORF1ab/nsp31228P1228LcCacTa33C.37.10.007853
ORF1ab/nsp31228P1228SCcaTca33D.20.000225
ORF1ab/nsp31228P1228LcCacTa33N.50.0053
ORF1ab/nsp31228P1228LcCacTa33N.60.021277
ORF1ab/nsp31228P1228LcCacTa33R.10.00027
ORF1ab/nsp31228P1228SCcaTca220.111111
ORF1ab/nsp31228P1228LcCacTa220.111111
ORF1ab/nsp31228P1228SCcaTca22A.30.004193
ORF1ab/nsp31228P1228LcCacTa22AU.20.004843
ORF1ab/nsp31228P1228LcCacTa22AU.30.004219
ORF1ab/nsp31228P1228delCCA---22AY.1200.000074
ORF1ab/nsp31228P1228delCCA---22AY.1210.000271
ORF1ab/nsp31228P1228delCCA---22AY.250.000012
ORF1ab/nsp31228P1228ICCaATa22AY.4.20.000043
ORF1ab/nsp31228P1228delCCA---22AY.430.000009
ORF1ab/nsp31228P1228PccAccT12AY.430.000004
ORF1ab/nsp31228P1228PccAccG12AY.430.000004
ORF1ab/nsp31228P1228SCcaTca22AY.440.000012
ORF1ab/nsp31228P1228ACcaGca22AY.440.000012
ORF1ab/nsp31228P1228delCCA---22AY.450.000243
ORF1ab/nsp31228P1228delCCA---22AY.540.000191
ORF1ab/nsp31228P1228SCcaTca22AY.580.001815
ORF1ab/nsp31228P1228PccAccT12AY.610.000105
ORF1ab/nsp31228P1228PccAccG12AY.610.000105
ORF1ab/nsp31228P1228QcCacAa22AY.750.000112
ORF1ab/nsp31228P1228del1ccAcc-22B.10.000018
ORF1ab/nsp31228P1228LcCacTa22B.1.1.10.000653
ORF1ab/nsp31228P1228SCcaTca22B.1.1.1750.153846
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2160.001781
ORF1ab/nsp31228P1228LcCacTa22B.1.1.2650.006309
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2770.001517
ORF1ab/nsp31228P1228LcCacTa22B.1.1.2940.002532
ORF1ab/nsp31228P1228LcCacTa22B.1.1.3060.000877
ORF1ab/nsp31228P1228LcCacTa22B.1.1.3110.000716
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3170.000823
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3690.000892
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3720.001377
ORF1ab/nsp31228P1228LcCacTa22B.1.1.390.001019
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4160.00181
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4320.002532
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4340.000697
ORF1ab/nsp31228P1228SCcaTca22B.1.1.440.004819
ORF1ab/nsp31228P1228LcCacTa22B.1.1.4640.002946
ORF1ab/nsp31228P1228LcCacTa22B.1.1.500.001358
ORF1ab/nsp31228P1228LcCacTa22B.1.1.5170.013605
ORF1ab/nsp31228P1228LcCacTa22B.1.1.5230.003125
ORF1ab/nsp31228P1228LcCacTa22B.1.1.630.000772
ORF1ab/nsp31228P1228LcCacTa22B.1.1.720.060606
ORF1ab/nsp31228P1228SCcaTca22B.1.130.004751
ORF1ab/nsp31228P1228LcCacTa22B.1.1430.042553
ORF1ab/nsp31228P1228LcCacTa22B.1.177.170.001642
ORF1ab/nsp31228P1228SCcaTca22B.1.177.560.001335
ORF1ab/nsp31228P1228SCcaTca22B.1.177.730.001133
ORF1ab/nsp31228P1228SCcaTca22B.1.1990.008264
ORF1ab/nsp31228P1228TCcaAca22B.1.20.000018
ORF1ab/nsp31228P1228LcCacTa22B.1.2180.010309
ORF1ab/nsp31228P1228LcCacTa22B.1.2340.000264
ORF1ab/nsp31228P1228LcCacTa22B.1.2390.002442
ORF1ab/nsp31228P1228SCcaTca22B.1.2410.001623
ORF1ab/nsp31228P1228PccAccG22B.1.258.110.000793
ORF1ab/nsp31228P1228PccAccG22B.1.30.005236
ORF1ab/nsp31228P1228LcCacTa22B.1.36.190.018519
ORF1ab/nsp31228P1228LcCacTa22B.1.3670.001585
ORF1ab/nsp31228P1228LcCacTa22B.1.3800.013245
ORF1ab/nsp31228P1228SCcaTca22B.1.3990.003868
ORF1ab/nsp31228P1228LcCacTa22B.1.4130.008511
ORF1ab/nsp31228P1228LcCacTa22B.1.4330.00639
ORF1ab/nsp31228P1228SCcaTca22B.1.5300.014286
ORF1ab/nsp31228P1228LcCacTa22B.1.5490.014388
ORF1ab/nsp31228P1228LcCacTa22B.1.5510.002581
ORF1ab/nsp31228P1228SCcaTca22B.1.5600.009259
ORF1ab/nsp31228P1228LcCacTa22B.1.5600.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.5610.000794
ORF1ab/nsp31228P1228SCcaTca22B.1.5750.000607
ORF1ab/nsp31228P1228SCcaTca22B.1.5820.000981
ORF1ab/nsp31228P1228SCcaTca22B.1.5950.000522
ORF1ab/nsp31228P1228SCcaTca22B.1.5970.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.617.10.000258
ORF1ab/nsp31228P1228LCCaTTa22B.1.6250.004706
ORF1ab/nsp31228P1228LcCacTa22B.1.6290.026667
ORF1ab/nsp31228P1228LcCacTa22B.1.700.04878
ORF1ab/nsp31228P1228LcCacTa22B.1.9.50.011364
ORF1ab/nsp31228P1228LcCacTa22B.40.004415
ORF1ab/nsp31228P1228LcCacTa22C.140.008658
ORF1ab/nsp31228P1228LcCacTa22C.36.3.10.005435
ORF1ab/nsp31228P1228LcCacTa22D.20.00015
ORF1ab/nsp31228P1228SCcaTca22N.50.003534
ORF1ab/nsp31228P1228QcCacAa22P.10.000032
ORF1ab/nsp31228P1228LcCacTa22P.1.20.002312
ORF1ab/nsp31228P1228SCcaTca22P.20.000373
ORF1ab/nsp31228P1228RcCacGa22Q.10.000253
ORF1ab/nsp31228P1228LcCacTa22Q.20.001227
ORF1ab/nsp31228P1228RcCacGa110.055556
ORF1ab/nsp31228P1228LcCacTa11A.150.015873
ORF1ab/nsp31228P1228LcCacTa11A.2.50.000499
ORF1ab/nsp31228P1228LcCacTa11A.2.5.20.001572
ORF1ab/nsp31228P1228SCcaTca11A.230.010526
ORF1ab/nsp31228P1228LcCacTa11A.23.10.000704
ORF1ab/nsp31228P1228LcCacTa11A.50.001923
ORF1ab/nsp31228P1228SCcaTca11AD.20.000219
ORF1ab/nsp31228P1228SCcaTca11AE.80.000489
ORF1ab/nsp31228P1228ECCaGAa11All0
ORF1ab/nsp31228P1228delCCA---11AY.1010.00049
ORF1ab/nsp31228P1228ICCaATa11AY.1020.000027
ORF1ab/nsp31228P1228SCcaTca11AY.1080.001103
ORF1ab/nsp31228P1228PccAccC11AY.140.000088
ORF1ab/nsp31228P1228SCcaTca11AY.160.00038
ORF1ab/nsp31228P1228SCcaTca11AY.16.10.00047
ORF1ab/nsp31228P1228LcCacTa11AY.180.010101
ORF1ab/nsp31228P1228ICCaATa11AY.230.00007
ORF1ab/nsp31228P1228delCCA---11AY.230.00007
ORF1ab/nsp31228P1228PccAccC11AY.260.000028
ORF1ab/nsp31228P1228ICCaATa11AY.290.000016
ORF1ab/nsp31228P1228delCCA---11AY.30.00001
ORF1ab/nsp31228P1228LcCacTa11AY.310.018519
ORF1ab/nsp31228P1228ICCaATa11AY.330.000067
ORF1ab/nsp31228P1228delCCA---11AY.330.000067
ORF1ab/nsp31228P1228ICCaATa11AY.360.000148
ORF1ab/nsp31228P1228delCCA---11AY.390.000025
ORF1ab/nsp31228P1228ICCaATa11AY.39.10.00004
ORF1ab/nsp31228P1228SCcaTca11AY.40.000002
ORF1ab/nsp31228P1228ICCaATa11AY.420.00004
ORF1ab/nsp31228P1228QcCacAa11AY.430.000004
ORF1ab/nsp31228P1228SCcaTca11AY.450.000122
ORF1ab/nsp31228P1228ICCaATa11AY.460.000104
ORF1ab/nsp31228P1228delCCA---11AY.460.000104
ORF1ab/nsp31228P1228delCCA---11AY.46.50.000198
ORF1ab/nsp31228P1228TCcaAca11AY.50.000021
ORF1ab/nsp31228P1228ICCaATa11AY.50.000021
ORF1ab/nsp31228P1228SCcaTca11AY.570.000656
ORF1ab/nsp31228P1228SCcaTca11AY.620.000436
ORF1ab/nsp31228P1228QcCacAa11AY.620.000436
ORF1ab/nsp31228P1228ACcaGca11AY.630.000387
ORF1ab/nsp31228P1228SCcaTca11AY.650.000533
ORF1ab/nsp31228P1228delCCA---11AY.660.00107
ORF1ab/nsp31228P1228SCcaTca11AY.680.000274
ORF1ab/nsp31228P1228SCcaTca11AY.740.000116
ORF1ab/nsp31228P1228delCCA---11AY.740.000116
ORF1ab/nsp31228P1228SCcaTca11AY.75.10.00018
ORF1ab/nsp31228P1228SCcaTca11AY.80.000606
ORF1ab/nsp31228P1228ICCaATa11AY.98.10.000048
ORF1ab/nsp31228P1228delCCA---11AY.990.001049
ORF1ab/nsp31228P1228ACcaGca11B.10.000009
ORF1ab/nsp31228P1228SCcaTca11B.1.1.100.001115
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1010.01
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1010.01
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1480.008772
ORF1ab/nsp31228P1228delCCA---11B.1.1.1530.001095
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1570.000913
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1580.012195
ORF1ab/nsp31228P1228delCCA---11B.1.1.1590.004673
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1610.003534
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1630.007634
ORF1ab/nsp31228P1228LcCacTa11B.1.1.1860.003436
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2040.00304
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2100.005714
ORF1ab/nsp31228P1228delCCA---11B.1.1.2140.000055
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2160.00089
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2170.003636
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2190.005
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2540.011236
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2650.003155
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2690.001353
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2800.003086
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2860.002899
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2970.002237
ORF1ab/nsp31228P1228LcCacTa11B.1.1.2980.000862
ORF1ab/nsp31228P1228delCCA---11B.1.1.3040.002809
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3120.001912
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3160.000925
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3260.001761
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3330.001076
ORF1ab/nsp31228P1228delCCA---11B.1.1.3480.000796
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3510.002793
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3540.004386
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3540.004386
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3690.000446
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3740.002375
ORF1ab/nsp31228P1228LcCacTa11B.1.1.3820.035714
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3970.002252
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4030.025641
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4090.002833
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4130.006897
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4140.142857
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4200.001006
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4290.004608
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4330.001425
ORF1ab/nsp31228P1228PccAccT11B.1.1.4340.000349
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4620.008621
ORF1ab/nsp31228P1228LcCacTa11B.1.1.4670.019231
ORF1ab/nsp31228P1228SCcaTca11B.1.1.500.000679
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5070.008696
ORF1ab/nsp31228P1228LcCacTa11B.1.1.5150.02
ORF1ab/nsp31228P1228SCcaTca11B.1.1.520.012195
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5230.001563
ORF1ab/nsp31228P1228SCcaTca11B.1.1.530.013699
ORF1ab/nsp31228P1228LcCacTa11B.1.1.540.003021
ORF1ab/nsp31228P1228SCcaTca11B.1.1.80.003584
ORF1ab/nsp31228P1228LcCacTa11B.1.1.990.02381
ORF1ab/nsp31228P1228LcCacTa11B.1.1110.001175
ORF1ab/nsp31228P1228LcCacTa11B.1.1310.008772
ORF1ab/nsp31228P1228SCcaTca11B.1.1310.008772
ORF1ab/nsp31228P1228LcCacTa11B.1.1420.002899
ORF1ab/nsp31228P1228LcCacTa11B.1.1490.003425
ORF1ab/nsp31228P1228SCcaTca11B.1.1490.003425
ORF1ab/nsp31228P1228SCcaTca11B.1.1570.002985
ORF1ab/nsp31228P1228TCcaAca11B.1.1600.000031
ORF1ab/nsp31228P1228PccAccT11B.1.1600.000031
ORF1ab/nsp31228P1228LcCacTa11B.1.177.120.000152
ORF1ab/nsp31228P1228delCCA---11B.1.177.350.000691
ORF1ab/nsp31228P1228LcCacTa11B.1.177.350.000691
ORF1ab/nsp31228P1228SCcaTca11B.1.177.420.000894
ORF1ab/nsp31228P1228SCcaTca11B.1.177.440.000519
ORF1ab/nsp31228P1228SCcaTca11B.1.177.530.002392
ORF1ab/nsp31228P1228SCcaTca11B.1.177.540.000606
ORF1ab/nsp31228P1228LcCacTa11B.1.177.550.002331
ORF1ab/nsp31228P1228SCcaTca11B.1.177.570.000281
ORF1ab/nsp31228P1228SCcaTca11B.1.177.580.001332
ORF1ab/nsp31228P1228SCcaTca11B.1.177.60.000977
ORF1ab/nsp31228P1228LcCacTa11B.1.177.600.000218
ORF1ab/nsp31228P1228SCcaTca11B.1.177.600.000218
ORF1ab/nsp31228P1228delCCA---11B.1.177.620.001192
ORF1ab/nsp31228P1228LcCacTa11B.1.177.650.000665
ORF1ab/nsp31228P1228QcCacAa11B.1.177.70.000165
ORF1ab/nsp31228P1228LcCacTa11B.1.177.750.001041
ORF1ab/nsp31228P1228LcCacTa11B.1.177.760.002494
ORF1ab/nsp31228P1228SCcaTca11B.1.177.770.000726
ORF1ab/nsp31228P1228TCcaAca11B.1.177.770.000726
ORF1ab/nsp31228P1228PccAccC11B.1.177.80.000752
ORF1ab/nsp31228P1228LcCacTa11B.1.177.820.000477
ORF1ab/nsp31228P1228delCCA---11B.1.177.830.001481
ORF1ab/nsp31228P1228LcCacTa11B.1.177.840.006667
ORF1ab/nsp31228P1228LcCacTa11B.1.1790.003759
ORF1ab/nsp31228P1228LcCacTa11B.1.1940.04
ORF1ab/nsp31228P1228QcCacAa11B.1.20.000009
ORF1ab/nsp31228P1228delCCA---11B.1.20.000009
ORF1ab/nsp31228P1228SCcaTca11B.1.214.20.0006
ORF1ab/nsp31228P1228SCcaTca11B.1.221.30.000833
ORF1ab/nsp31228P1228LcCacTa11B.1.2230.002778
ORF1ab/nsp31228P1228SCcaTca11B.1.230.006061
ORF1ab/nsp31228P1228LcCacTa11B.1.2320.000537
ORF1ab/nsp31228P1228LcCacTa11B.1.2360.002053
ORF1ab/nsp31228P1228SCcaTca11B.1.2390.001221
ORF1ab/nsp31228P1228TCcaAca11B.1.2390.001221
ORF1ab/nsp31228P1228PccAccG11B.1.2400.000216
ORF1ab/nsp31228P1228TCcaAca11B.1.2430.00007
ORF1ab/nsp31228P1228PccAccG11B.1.2430.00007
ORF1ab/nsp31228P1228LcCacTa11B.1.2470.014925
ORF1ab/nsp31228P1228SCcaTca11B.1.258.110.000396
ORF1ab/nsp31228P1228SCcaTca11B.1.258.140.00098
ORF1ab/nsp31228P1228del1ccAcc-11B.1.258.140.00098
ORF1ab/nsp31228P1228LcCacTa11B.1.258.220.002667
ORF1ab/nsp31228P1228LcCacTa11B.1.2600.003344
ORF1ab/nsp31228P1228LcCacTa11B.1.2790.000514
ORF1ab/nsp31228P1228SCcaTca11B.1.2790.000514
ORF1ab/nsp31228P1228PccAccG11B.1.2910.019231
ORF1ab/nsp31228P1228LcCacTa11B.1.3010.005917
ORF1ab/nsp31228P1228QcCacAa11B.1.3110.000275
ORF1ab/nsp31228P1228SCcaTca11B.1.3190.003049
ORF1ab/nsp31228P1228SCcaTca11B.1.3360.002439
ORF1ab/nsp31228P1228LcCacTa11B.1.3400.004292
ORF1ab/nsp31228P1228PccAccG11B.1.3510.00003
ORF1ab/nsp31228P1228SCcaTca11B.1.351.20.000303
ORF1ab/nsp31228P1228SCcaTca11B.1.351.50.0006
ORF1ab/nsp31228P1228LcCacTa11B.1.36.160.001425
ORF1ab/nsp31228P1228LcCacTa11B.1.36.170.000494
ORF1ab/nsp31228P1228SCcaTca11B.1.36.170.000494
ORF1ab/nsp31228P1228LcCacTa11B.1.36.180.00042
ORF1ab/nsp31228P1228SCcaTca11B.1.36.360.000602
ORF1ab/nsp31228P1228LcCacTa11B.1.36.390.002217
ORF1ab/nsp31228P1228LcCacTa11B.1.3660.004878
ORF1ab/nsp31228P1228SCcaTca11B.1.3670.000792
ORF1ab/nsp31228P1228LcCacTa11B.1.3780.006849
ORF1ab/nsp31228P1228SCcaTca11B.1.3890.001002
ORF1ab/nsp31228P1228LcCacTa11B.1.3970.004854
ORF1ab/nsp31228P1228LcCacTa11B.1.3980.002976
ORF1ab/nsp31228P1228LcCacTa11B.1.4050.012346
ORF1ab/nsp31228P1228SCcaTca11B.1.4110.003704
ORF1ab/nsp31228P1228SCcaTca11B.1.4160.001269
ORF1ab/nsp31228P1228TCcaAca11B.1.4270.00005
ORF1ab/nsp31228P1228delCCA---11B.1.428.20.033333
ORF1ab/nsp31228P1228TCcaAca11B.1.4290.000024
ORF1ab/nsp31228P1228PccAccG11B.1.4290.000024
ORF1ab/nsp31228P1228LcCacTa11B.1.4320.011236
ORF1ab/nsp31228P1228LcCacTa11B.1.4360.001029
ORF1ab/nsp31228P1228SCcaTca11B.1.4380.006536
ORF1ab/nsp31228P1228LcCacTa11B.1.438.10.000107
ORF1ab/nsp31228P1228LcCacTa11B.1.4660.023256
ORF1ab/nsp31228P1228SCcaTca11B.1.4660.023256
ORF1ab/nsp31228P1228LcCacTa11B.1.4760.1
ORF1ab/nsp31228P1228LcCacTa11B.1.4800.002488
ORF1ab/nsp31228P1228SCcaTca11B.1.4990.00105
ORF1ab/nsp31228P1228LcCacTa11B.1.5040.03125
ORF1ab/nsp31228P1228LcCacTa11B.1.5090.000866
ORF1ab/nsp31228P1228LcCacTa11B.1.5300.007143
ORF1ab/nsp31228P1228LcCacTa11B.1.5380.008065
ORF1ab/nsp31228P1228SCcaTca11B.1.5450.014493
ORF1ab/nsp31228P1228del1ccAcc-11B.1.5460.003704
ORF1ab/nsp31228P1228LcCacTa11B.1.5500.013699
ORF1ab/nsp31228P1228LcCacTa11B.1.5540.004405
ORF1ab/nsp31228P1228LcCacTa11B.1.5580.004566
ORF1ab/nsp31228P1228LcCacTa11B.1.5650.00081
ORF1ab/nsp31228P1228LcCacTa11B.1.5680.001111
ORF1ab/nsp31228P1228SCcaTca11B.1.5740.002151
ORF1ab/nsp31228P1228LcCacTa11B.1.5750.000303
ORF1ab/nsp31228P1228LcCacTa11B.1.5770.000687
ORF1ab/nsp31228P1228SCcaTca11B.1.5770.000687
ORF1ab/nsp31228P1228LcCacTa11B.1.5800.004065
ORF1ab/nsp31228P1228LcCacTa11B.1.5810.009434
ORF1ab/nsp31228P1228SCcaTca11B.1.5810.009434
ORF1ab/nsp31228P1228LcCacTa11B.1.5900.004545
ORF1ab/nsp31228P1228LcCacTa11B.1.5990.00365
ORF1ab/nsp31228P1228SCcaTca11B.1.6040.017241
ORF1ab/nsp31228P1228LcCacTa11B.1.6120.002653
ORF1ab/nsp31228P1228SCcaTca11B.1.6120.002653
ORF1ab/nsp31228P1228TCcaAca11B.1.617.20.000004
ORF1ab/nsp31228P1228ICCaATa11B.1.617.20.000004
ORF1ab/nsp31228P1228del2CCa--a11B.1.617.20.000004
ORF1ab/nsp31228P1228QcCacAa11B.1.619.10.000641
ORF1ab/nsp31228P1228LcCacTa11B.1.6200.000946
ORF1ab/nsp31228P1228LcCacTa11B.1.6270.00202
ORF1ab/nsp31228P1228PccAccG11B.1.6280.000352
ORF1ab/nsp31228P1228delCCA---11B.1.6300.005236
ORF1ab/nsp31228P1228SCcaTca11B.1.6310.003367
ORF1ab/nsp31228P1228LcCacTa11B.1.6320.006711
ORF1ab/nsp31228P1228LcCacTa11B.1.6340.003425
ORF1ab/nsp31228P1228LcCacTa11B.1.810.021277
ORF1ab/nsp31228P1228LcCacTa11B.370.028571
ORF1ab/nsp31228P1228LcCacTa11B.450.003831
ORF1ab/nsp31228P1228LcCacTa11B.60.00091
ORF1ab/nsp31228P1228SCcaTca11C.10.002392
ORF1ab/nsp31228P1228delCCA---11C.20.016129
ORF1ab/nsp31228P1228del2CCa--a11C.20.016129
ORF1ab/nsp31228P1228SCcaTca11C.2.10.006667
ORF1ab/nsp31228P1228LcCacTa11C.300.001727
ORF1ab/nsp31228P1228SCcaTca11C.310.017857
ORF1ab/nsp31228P1228ECCaGAa11C.350.000774
ORF1ab/nsp31228P1228LcCacTa11C.360.000911
ORF1ab/nsp31228P1228SCcaTca11C.90.030303
ORF1ab/nsp31228P1228PccAccT11D.20.000075
ORF1ab/nsp31228P1228SCcaTca11N.60.007092
ORF1ab/nsp31228P1228delCCA---11P.10.000016
ORF1ab/nsp31228P1228SCcaTca11P.1.120.000484
ORF1ab/nsp31228P1228TCcaAca11P.1.140.000048
ORF1ab/nsp31228P1228ACcaGca11P.1.150.000232
ORF1ab/nsp31228P1228LcCacTa11P.30.001595
ORF1ab/nsp31228P1228LcCacTa11P.70.004367
ORF1ab/nsp31228P1228LcCacTa11Q.10.000126
ORF1ab/nsp31228P1228TCcaAca11Q.10.000126
ORF1ab/nsp31228P1228LcCacTa11Q.30.000145
ORF1ab/nsp31228P1228SCcaTca11Q.40.000455
ORF1ab/nsp31228P1228LcCacTa11Q.70.001111
ORF1ab/nsp31228P1228PccAccG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.