CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1223 | C1223C | C2041C | syn | tgC | tgT | 2985 | 2985 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223Y | C2041Y | nonsyn | tGc | tAc | 513 | 508 | 0.990253 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223Y | C2041Y | nonsyn | tGC | tAT | 513 | 5 | 0.00974659 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223del | C2041del | del | TGC | --- | 224 | 224 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223S | C2041S | nonsyn | Tgc | Agc | 180 | 167 | 0.927778 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223S | C2041S | nonsyn | tGc | tCc | 180 | 13 | 0.0722222 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223R | C2041R | nonsyn | Tgc | Cgc | 64 | 64 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223F | C2041F | nonsyn | tGc | tTc | 46 | 45 | 0.978261 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223F | C2041F | nonsyn | tGC | tTT | 46 | 1 | 0.0217391 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223G | C2041G | nonsyn | Tgc | Ggc | 33 | 33 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223W | C2041W | nonsyn | tgC | tgG | 3 | 3 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223X | C2041X | nonsyn | tgC | tgA | 3 | 3 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223del1 | C2041del1 | del | Tgc | -gc | 2 | 2 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223N | C2041N | nonsyn | TGc | AAc | 1 | 1 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223del2 | C2041del2 | del | tGC | t-- | 1 | 1 | 1 | 6386-6388 |
ORF1ab/nsp3 | 1223 | C1223L | C2041L | nonsyn | tGC | tTA | 1 | 1 | 1 | 6386-6388 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2985 | 2985 | All | 0.000571 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1426 | 1426 | AY.64 | 0.84881 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 508 | 513 | All | 0.000097 |
ORF1ab/nsp3 | 1223 | C1223Y | tGC | tAT | 5 | 513 | All | 0.000001 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 331 | 331 | B.1.1.7 | 0.000296 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 224 | 224 | All | 0.000043 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 167 | 180 | All | 0.000032 |
ORF1ab/nsp3 | 1223 | C1223S | tGc | tCc | 13 | 180 | All | 0.000002 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 176 | 176 | B.1.177.21 | 0.013459 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 142 | 142 | B.1.2 | 0.00125 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 120 | 120 | B.1.617.2 | 0.000452 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 96 | 96 | AY.4 | 0.000149 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 90 | 90 | B.1.1.363 | 0.538922 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 69 | 69 | AY.3 | 0.000686 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 65 | 65 | AY.43 | 0.000288 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 64 | 64 | All | 0.000012 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 64 | 64 | AY.102 | 0.001697 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 57 | 57 | B.1.1.302 | 0.118257 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 50 | 50 | B.1.2 | 0.00044 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 48 | 48 | B.1.177.42 | 0.042934 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 45 | 46 | All | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223F | tGC | tTT | 1 | 46 | All | 0 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 34 | 34 | B.1 | 0.000311 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 33 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 24 | 24 | B.1.221 | 0.001705 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 22 | 22 | B.1.1.214 | 0.00122 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 21 | 21 | AY.46.5 | 0.004167 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 21 | 21 | B.1.427 | 0.00106 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 18 | 19 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 1223 | C1223Y | tGC | tAT | 1 | 19 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 19 | 19 | B.1.1 | 0.000345 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 18 | 18 | AY.65 | 0.009595 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 12 | 12 | AY.24 | 0.005172 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 9 | 10 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1223 | C1223F | tGC | tTT | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp3 | 1223 | C1223S | tGc | tCc | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 8 | 8 | B.1.177.3 | 0.061069 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 8 | 8 | B.1.258.23 | 0.190476 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | AY.40 | 0.00675 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 6 | 6 | AY.108 | 0.006615 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | AY.94 | 0.002213 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | B.1.1.369 | 0.002231 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | B.1.1.429 | 0.018433 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1223 | C1223S | tGc | tCc | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | B.1.1.75 | 0.042553 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1223 | C1223Y | tGC | tAT | 3 | 4 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 4 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1223 | C1223W | tgC | tgG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1223 | C1223X | tgC | tgA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | B.1.439 | 0.017751 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1223 | C1223del1 | Tgc | -gc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | B.1.1.98 | 0.037037 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 2 | 2 | C.2 | 0.032258 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1223 | C1223W | tgC | tgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 1223 | C1223N | TGc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1223 | C1223L | tGC | tTA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1223 | C1223del2 | tGC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1223 | C1223S | tGc | tCc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1223 | C1223W | tgC | tgG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1223 | C1223del2 | tGC | t-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223L | tGC | tTA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1223 | C1223S | tGc | tCc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1223 | C1223N | TGc | AAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223del1 | Tgc | -gc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223W | tgC | tgG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1223 | C1223X | tgC | tgA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1223 | C1223R | Tgc | Cgc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1223 | C1223X | tgC | tgA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp3 | 1223 | C1223X | tgC | tgA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1223 | C1223G | Tgc | Ggc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1223 | C1223F | tGc | tTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1223 | C1223del1 | Tgc | -gc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1223 | C1223S | Tgc | Agc | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp3 | 1223 | C1223Y | tGc | tAc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | B.6.5 | 0.076923 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1223 | C1223Y | tGC | tAT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1223 | C1223del | TGC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1223 | C1223C | tgC | tgT | 1 | 1 | V.2 | 0.032258 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|