CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1217

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31217G1217RG2035RnonsynGgaAga97597516368-6370
ORF1ab/nsp31217G1217EG2035EnonsyngGagAa31031016368-6370
ORF1ab/nsp31217G1217delG2035deldelGGA---22322316368-6370
ORF1ab/nsp31217G1217VG2035VnonsyngGagTa13113116368-6370
ORF1ab/nsp31217G1217GG2035GsynggAggG100790.796368-6370
ORF1ab/nsp31217G1217GG2035GsynggAggC100110.116368-6370
ORF1ab/nsp31217G1217GG2035GsynggAggT100100.16368-6370
ORF1ab/nsp31217G1217AG2035AnonsyngGagCa6616368-6370
ORF1ab/nsp31217G1217XG2035XnonsynGgaTga5516368-6370
ORF1ab/nsp31217G1217del1G2035del1delggAgg-1116368-6370
ORF1ab/nsp31217G1217del2G2035del2delGGa--a1116368-6370
ORF1ab/nsp31217G1217WG2035WnonsynGgATgG1116368-6370
ORF1ab/nsp31217G1217SG2035SnonsynGGaTCa1116368-6370

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31217G1217RGgaAga975975All0.000186
ORF1ab/nsp31217G1217EgGagAa310310All0.000059
ORF1ab/nsp31217G1217delGGA---223223All0.000043
ORF1ab/nsp31217G1217VgGagTa131131All0.000025
ORF1ab/nsp31217G1217RGgaAga118118B.1.1.70.000106
ORF1ab/nsp31217G1217RGgaAga117117AY.40.000182
ORF1ab/nsp31217G1217RGgaAga108108B.1.6200.102176
ORF1ab/nsp31217G1217EgGagAa103103B.1.1.70.000092
ORF1ab/nsp31217G1217GggAggG79100All0.000015
ORF1ab/nsp31217G1217GggAggC11100All0.000002
ORF1ab/nsp31217G1217GggAggT10100All0.000002
ORF1ab/nsp31217G1217RGgaAga7777AY.430.000341
ORF1ab/nsp31217G1217VgGagTa6565B.1.1.2220.01326
ORF1ab/nsp31217G1217RGgaAga6161P.10.000961
ORF1ab/nsp31217G1217RGgaAga4747AY.440.000286
ORF1ab/nsp31217G1217EgGagAa4545AY.39.10.001783
ORF1ab/nsp31217G1217RGgaAga4545B.10.000412
ORF1ab/nsp31217G1217delGGA---3939AY.40.000061
ORF1ab/nsp31217G1217RGgaAga3939B.1.617.20.000147
ORF1ab/nsp31217G1217RGgaAga3434B.1.6210.00301
ORF1ab/nsp31217G1217RGgaAga3232B.1.20.000282
ORF1ab/nsp31217G1217GggAggG3030AY.250.00018
ORF1ab/nsp31217G1217RGgaAga3030AY.250.00018
ORF1ab/nsp31217G1217RGgaAga3030AY.30.000298
ORF1ab/nsp31217G1217RGgaAga2828B.1.1.3821
ORF1ab/nsp31217G1217EgGagAa2626P.10.00041
ORF1ab/nsp31217G1217delGGA---2323B.1.617.20.000087
ORF1ab/nsp31217G1217delGGA---2121AY.46.50.004167
ORF1ab/nsp31217G1217RGgaAga2121B.1.10.000381
ORF1ab/nsp31217G1217EgGagAa2020AY.250.00012
ORF1ab/nsp31217G1217EgGagAa1515B.1.3510.000446
ORF1ab/nsp31217G1217RGgaAga1515B.1.4270.000757
ORF1ab/nsp31217G1217delGGA---1313AY.1000.000598
ORF1ab/nsp31217G1217delGGA---1313AY.440.000079
ORF1ab/nsp31217G1217delGGA---1313B.1.1.70.000012
ORF1ab/nsp31217G1217RGgaAga1313B.1.5260.000306
ORF1ab/nsp31217G1217RGgaAga1212AY.1020.000318
ORF1ab/nsp31217G1217RGgaAga1111AY.1030.000068
ORF1ab/nsp31217G1217delGGA---1111B.1.177.30.083969
ORF1ab/nsp31217G1217VgGagTa1010B.10.000092
ORF1ab/nsp31217G1217EgGagAa1010B.1.351.50.005995
ORF1ab/nsp31217G1217GggAggG79AY.1030.000043
ORF1ab/nsp31217G1217GggAggC19AY.1030.000006
ORF1ab/nsp31217G1217GggAggT19AY.1030.000006
ORF1ab/nsp31217G1217RGgaAga88AY.260.000226
ORF1ab/nsp31217G1217VgGagTa88B.1.617.20.00003
ORF1ab/nsp31217G1217VgGagTa77AY.1030.000043
ORF1ab/nsp31217G1217RGgaAga77AY.290.00011
ORF1ab/nsp31217G1217GggAggG77B.1.1.70.000006
ORF1ab/nsp31217G1217EgGagAa77B.1.20.000062
ORF1ab/nsp31217G1217RGgaAga77B.1.2210.000497
ORF1ab/nsp31217G1217AgGagCa66All0.000001
ORF1ab/nsp31217G1217EgGagAa66AY.1030.000037
ORF1ab/nsp31217G1217EgGagAa66AY.40.000009
ORF1ab/nsp31217G1217XGgaTga55All0.000001
ORF1ab/nsp31217G1217VgGagTa55AY.1190.000177
ORF1ab/nsp31217G1217GggAggG55AY.260.000142
ORF1ab/nsp31217G1217EgGagAa55AY.450.000608
ORF1ab/nsp31217G1217delGGA---55B.10.000046
ORF1ab/nsp31217G1217EgGagAa55B.10.000046
ORF1ab/nsp31217G1217delGGA---55B.1.1770.000066
ORF1ab/nsp31217G1217delGGA---55B.1.177.830.007407
ORF1ab/nsp31217G1217EgGagAa55B.1.2580.000333
ORF1ab/nsp31217G1217RGgaAga55B.1.5960.000436
ORF1ab/nsp31217G1217EgGagAa55B.1.6210.000443
ORF1ab/nsp31217G1217RGgaAga55B.1.6280.001762
ORF1ab/nsp31217G1217EgGagAa44AY.30.00004
ORF1ab/nsp31217G1217EgGagAa44AY.330.000267
ORF1ab/nsp31217G1217delGGA---44AY.390.000099
ORF1ab/nsp31217G1217GggAggT34AY.40.000005
ORF1ab/nsp31217G1217GggAggG14AY.40.000002
ORF1ab/nsp31217G1217VgGagTa44AY.50.000083
ORF1ab/nsp31217G1217GggAggG44B.1.1.10.001307
ORF1ab/nsp31217G1217RGgaAga44B.1.1770.000053
ORF1ab/nsp31217G1217GggAggG44B.1.20.000035
ORF1ab/nsp31217G1217VgGagTa44B.1.20.000035
ORF1ab/nsp31217G1217delGGA---44B.1.2340.000528
ORF1ab/nsp31217G1217EgGagAa44B.1.617.20.000015
ORF1ab/nsp31217G1217RGgaAga44C.370.000464
ORF1ab/nsp31217G1217delGGA---44P.10.000063
ORF1ab/nsp31217G1217delGGA---44P.1.140.000191
ORF1ab/nsp31217G1217AgGagCa33A.2.40.010101
ORF1ab/nsp31217G1217VgGagTa33AY.390.000074
ORF1ab/nsp31217G1217RGgaAga33AY.4.20.000065
ORF1ab/nsp31217G1217VgGagTa33AY.440.000018
ORF1ab/nsp31217G1217GggAggG33AY.440.000018
ORF1ab/nsp31217G1217EgGagAa33AY.440.000018
ORF1ab/nsp31217G1217RGgaAga33AY.50.000062
ORF1ab/nsp31217G1217RGgaAga33B.1.1.3060.001315
ORF1ab/nsp31217G1217RGgaAga33B.1.1.5190.000119
ORF1ab/nsp31217G1217RGgaAga33B.1.360.000438
ORF1ab/nsp31217G1217EgGagAa33B.1.4290.000071
ORF1ab/nsp31217G1217delGGA---33B.1.5250.000339
ORF1ab/nsp31217G1217EgGagAa22A.2.50.000998
ORF1ab/nsp31217G1217RGgaAga22AY.1000.000092
ORF1ab/nsp31217G1217VgGagTa22AY.1020.000053
ORF1ab/nsp31217G1217RGgaAga22AY.1100.000225
ORF1ab/nsp31217G1217delGGA---22AY.1200.000074
ORF1ab/nsp31217G1217delGGA---22AY.1210.000271
ORF1ab/nsp31217G1217RGgaAga22AY.230.000139
ORF1ab/nsp31217G1217delGGA---22AY.290.000032
ORF1ab/nsp31217G1217EgGagAa22AY.3.10.000171
ORF1ab/nsp31217G1217RGgaAga22AY.330.000134
ORF1ab/nsp31217G1217EgGagAa22AY.390.000049
ORF1ab/nsp31217G1217GggAggG22AY.390.000049
ORF1ab/nsp31217G1217EgGagAa22AY.430.000009
ORF1ab/nsp31217G1217GggAggG12AY.430.000004
ORF1ab/nsp31217G1217GggAggC12AY.430.000004
ORF1ab/nsp31217G1217RGgaAga22AY.460.000208
ORF1ab/nsp31217G1217GggAggT22AY.46.60.000144
ORF1ab/nsp31217G1217RGgaAga22AY.470.000062
ORF1ab/nsp31217G1217GggAggG22AY.60.000082
ORF1ab/nsp31217G1217RGgaAga22AY.90.000135
ORF1ab/nsp31217G1217GggAggG22B.10.000018
ORF1ab/nsp31217G1217XGgaTga22B.10.000018
ORF1ab/nsp31217G1217delGGA---22B.1.10.000036
ORF1ab/nsp31217G1217VgGagTa22B.1.10.000036
ORF1ab/nsp31217G1217EgGagAa22B.1.1.1570.001826
ORF1ab/nsp31217G1217GggAggC22B.1.1.2270.008696
ORF1ab/nsp31217G1217RGgaAga22B.1.1.280.000622
ORF1ab/nsp31217G1217RGgaAga22B.1.1.330.000842
ORF1ab/nsp31217G1217GggAggG12B.1.1.5190.00004
ORF1ab/nsp31217G1217GggAggC12B.1.1.5190.00004
ORF1ab/nsp31217G1217delGGA---22B.1.1.980.037037
ORF1ab/nsp31217G1217RGgaAga22B.1.1600.000062
ORF1ab/nsp31217G1217RGgaAga22B.1.177.400.010309
ORF1ab/nsp31217G1217RGgaAga22B.1.177.570.000562
ORF1ab/nsp31217G1217delGGA---22B.1.2210.000142
ORF1ab/nsp31217G1217GggAggT22B.1.221.40.008333
ORF1ab/nsp31217G1217RGgaAga22B.1.2580.000133
ORF1ab/nsp31217G1217delGGA---22B.1.2580.000133
ORF1ab/nsp31217G1217RGgaAga22B.1.3510.000059
ORF1ab/nsp31217G1217VgGagTa22B.1.4000.000858
ORF1ab/nsp31217G1217EgGagAa22B.1.5580.009132
ORF1ab/nsp31217G1217GggAggG12B.1.617.20.000004
ORF1ab/nsp31217G1217GggAggT12B.1.617.20.000004
ORF1ab/nsp31217G1217RGgaAga22B.400.000729
ORF1ab/nsp31217G1217delGGA---22C.20.032258
ORF1ab/nsp31217G1217RGgaAga22D.20.00015
ORF1ab/nsp31217G1217VgGagTa22W.40.002703
ORF1ab/nsp31217G1217AgGagCa11A.20.000662
ORF1ab/nsp31217G1217WGgATgG11All0
ORF1ab/nsp31217G1217SGGaTCa11All0
ORF1ab/nsp31217G1217del2GGa--a11All0
ORF1ab/nsp31217G1217del1ggAgg-11All0
ORF1ab/nsp31217G1217delGGA---11AY.1010.00049
ORF1ab/nsp31217G1217EgGagAa11AY.1020.000027
ORF1ab/nsp31217G1217delGGA---11AY.1030.000006
ORF1ab/nsp31217G1217VgGagTa11AY.1080.001103
ORF1ab/nsp31217G1217delGGA---11AY.1080.001103
ORF1ab/nsp31217G1217GggAggC11AY.1130.000142
ORF1ab/nsp31217G1217EgGagAa11AY.1130.000142
ORF1ab/nsp31217G1217EgGagAa11AY.1170.000085
ORF1ab/nsp31217G1217RGgaAga11AY.1190.000035
ORF1ab/nsp31217G1217RGgaAga11AY.1200.000037
ORF1ab/nsp31217G1217EgGagAa11AY.140.000088
ORF1ab/nsp31217G1217VgGagTa11AY.200.000039
ORF1ab/nsp31217G1217delGGA---11AY.230.00007
ORF1ab/nsp31217G1217delGGA---11AY.240.000431
ORF1ab/nsp31217G1217EgGagAa11AY.260.000028
ORF1ab/nsp31217G1217GggAggC11AY.290.000016
ORF1ab/nsp31217G1217VgGagTa11AY.30.00001
ORF1ab/nsp31217G1217VgGagTa11AY.330.000067
ORF1ab/nsp31217G1217delGGA---11AY.330.000067
ORF1ab/nsp31217G1217RGgaAga11AY.340.000097
ORF1ab/nsp31217G1217RGgaAga11AY.34.10.00051
ORF1ab/nsp31217G1217RGgaAga11AY.360.000148
ORF1ab/nsp31217G1217RGgaAga11AY.390.000025
ORF1ab/nsp31217G1217WGgATgG11AY.390.000025
ORF1ab/nsp31217G1217GggAggG11AY.39.10.00004
ORF1ab/nsp31217G1217GggAggC11AY.39.20.001541
ORF1ab/nsp31217G1217VgGagTa11AY.40.000002
ORF1ab/nsp31217G1217AgGagCa11AY.40.000002
ORF1ab/nsp31217G1217RGgaAga11AY.4.10.000737
ORF1ab/nsp31217G1217EgGagAa11AY.420.00004
ORF1ab/nsp31217G1217delGGA---11AY.430.000004
ORF1ab/nsp31217G1217VgGagTa11AY.430.000004
ORF1ab/nsp31217G1217delGGA---11AY.450.000122
ORF1ab/nsp31217G1217delGGA---11AY.460.000104
ORF1ab/nsp31217G1217RGgaAga11AY.46.50.000198
ORF1ab/nsp31217G1217RGgaAga11AY.46.60.000072
ORF1ab/nsp31217G1217delGGA---11AY.470.000031
ORF1ab/nsp31217G1217delGGA---11AY.490.003195
ORF1ab/nsp31217G1217delGGA---11AY.50.000021
ORF1ab/nsp31217G1217GggAggG11AY.50.000021
ORF1ab/nsp31217G1217VgGagTa11AY.5.30.000337
ORF1ab/nsp31217G1217EgGagAa11AY.510.000909
ORF1ab/nsp31217G1217EgGagAa11AY.520.000814
ORF1ab/nsp31217G1217RGgaAga11AY.540.000095
ORF1ab/nsp31217G1217RGgaAga11AY.60.000041
ORF1ab/nsp31217G1217delGGA---11AY.660.00107
ORF1ab/nsp31217G1217RGgaAga11AY.680.000274
ORF1ab/nsp31217G1217VgGagTa11AY.730.000665
ORF1ab/nsp31217G1217delGGA---11AY.740.000116
ORF1ab/nsp31217G1217EgGagAa11AY.750.000056
ORF1ab/nsp31217G1217RGgaAga11AY.750.000056
ORF1ab/nsp31217G1217RGgaAga11AY.75.10.00018
ORF1ab/nsp31217G1217RGgaAga11AY.870.000833
ORF1ab/nsp31217G1217RGgaAga11AY.880.000884
ORF1ab/nsp31217G1217GggAggG11AY.90.000068
ORF1ab/nsp31217G1217RGgaAga11AY.910.00073
ORF1ab/nsp31217G1217delGGA---11AY.990.001049
ORF1ab/nsp31217G1217EgGagAa11B0.000128
ORF1ab/nsp31217G1217RGgaAga11B0.000128
ORF1ab/nsp31217G1217VgGagTa11B0.000128
ORF1ab/nsp31217G1217del1ggAgg-11B.10.000009
ORF1ab/nsp31217G1217AgGagCa11B.10.000009
ORF1ab/nsp31217G1217EgGagAa11B.1.10.000018
ORF1ab/nsp31217G1217RGgaAga11B.1.1.10.000327
ORF1ab/nsp31217G1217delGGA---11B.1.1.100.001115
ORF1ab/nsp31217G1217RGgaAga11B.1.1.1350.004695
ORF1ab/nsp31217G1217delGGA---11B.1.1.1590.004673
ORF1ab/nsp31217G1217RGgaAga11B.1.1.2050.003717
ORF1ab/nsp31217G1217delGGA---11B.1.1.2140.000055
ORF1ab/nsp31217G1217RGgaAga11B.1.1.2160.00089
ORF1ab/nsp31217G1217delGGA---11B.1.1.2220.000204
ORF1ab/nsp31217G1217GggAggG11B.1.1.280.000311
ORF1ab/nsp31217G1217RGgaAga11B.1.1.2910.000742
ORF1ab/nsp31217G1217RGgaAga11B.1.1.3260.001761
ORF1ab/nsp31217G1217GggAggC11B.1.1.330.000421
ORF1ab/nsp31217G1217VgGagTa11B.1.1.3480.000796
ORF1ab/nsp31217G1217delGGA---11B.1.1.3480.000796
ORF1ab/nsp31217G1217RGgaAga11B.1.1.3690.000446
ORF1ab/nsp31217G1217RGgaAga11B.1.1.370.000193
ORF1ab/nsp31217G1217GggAggC11B.1.1.3890.006061
ORF1ab/nsp31217G1217RGgaAga11B.1.1.390.00051
ORF1ab/nsp31217G1217RGgaAga11B.1.1.4320.001266
ORF1ab/nsp31217G1217RGgaAga11B.1.1.4850.016667
ORF1ab/nsp31217G1217delGGA---11B.1.1.5190.00004
ORF1ab/nsp31217G1217delGGA---11B.1.1.520.012195
ORF1ab/nsp31217G1217delGGA---11B.1.1.5240.020833
ORF1ab/nsp31217G1217VgGagTa11B.1.1.70.000001
ORF1ab/nsp31217G1217XGgaTga11B.1.110.30.000718
ORF1ab/nsp31217G1217VgGagTa11B.1.1110.001175
ORF1ab/nsp31217G1217GggAggT11B.1.1180.006711
ORF1ab/nsp31217G1217RGgaAga11B.1.1280.000635
ORF1ab/nsp31217G1217delGGA---11B.1.1600.000031
ORF1ab/nsp31217G1217RGgaAga11B.1.1690.014925
ORF1ab/nsp31217G1217EgGagAa11B.1.1770.000013
ORF1ab/nsp31217G1217RGgaAga11B.1.177.210.000076
ORF1ab/nsp31217G1217delGGA---11B.1.177.350.000691
ORF1ab/nsp31217G1217delGGA---11B.1.177.450.000381
ORF1ab/nsp31217G1217delGGA---11B.1.177.620.001192
ORF1ab/nsp31217G1217EgGagAa11B.1.177.630.002703
ORF1ab/nsp31217G1217delGGA---11B.1.177.810.000189
ORF1ab/nsp31217G1217del2GGa--a11B.1.177.830.001481
ORF1ab/nsp31217G1217RGgaAga11B.1.177.860.000183
ORF1ab/nsp31217G1217GggAggG11B.1.177.870.000728
ORF1ab/nsp31217G1217delGGA---11B.1.20.000009
ORF1ab/nsp31217G1217RGgaAga11B.1.2100.002132
ORF1ab/nsp31217G1217RGgaAga11B.1.2320.000537
ORF1ab/nsp31217G1217EgGagAa11B.1.2400.000216
ORF1ab/nsp31217G1217VgGagTa11B.1.2430.00007
ORF1ab/nsp31217G1217RGgaAga11B.1.258.110.000396
ORF1ab/nsp31217G1217delGGA---11B.1.258.170.000104
ORF1ab/nsp31217G1217delGGA---11B.1.3510.00003
ORF1ab/nsp31217G1217XGgaTga11B.1.3510.00003
ORF1ab/nsp31217G1217delGGA---11B.1.360.000146
ORF1ab/nsp31217G1217GggAggG11B.1.360.000146
ORF1ab/nsp31217G1217EgGagAa11B.1.36.290.000517
ORF1ab/nsp31217G1217RGgaAga11B.1.36.360.000602
ORF1ab/nsp31217G1217RGgaAga11B.1.3690.000285
ORF1ab/nsp31217G1217delGGA---11B.1.3820.008929
ORF1ab/nsp31217G1217GggAggG11B.1.3890.001002
ORF1ab/nsp31217G1217EgGagAa11B.1.3980.002976
ORF1ab/nsp31217G1217RGgaAga11B.1.4090.000781
ORF1ab/nsp31217G1217EgGagAa11B.1.4270.00005
ORF1ab/nsp31217G1217delGGA---11B.1.428.20.033333
ORF1ab/nsp31217G1217delGGA---11B.1.4290.000024
ORF1ab/nsp31217G1217RGgaAga11B.1.4290.000024
ORF1ab/nsp31217G1217RGgaAga11B.1.4410.009615
ORF1ab/nsp31217G1217EgGagAa11B.1.4530.003236
ORF1ab/nsp31217G1217RGgaAga11B.1.5250.000113
ORF1ab/nsp31217G1217GggAggG11B.1.5260.000024
ORF1ab/nsp31217G1217delGGA---11B.1.5260.000024
ORF1ab/nsp31217G1217delGGA---11B.1.5610.000397
ORF1ab/nsp31217G1217RGgaAga11B.1.5640.000426
ORF1ab/nsp31217G1217RGgaAga11B.1.575.10.002439
ORF1ab/nsp31217G1217RGgaAga11B.1.5820.000491
ORF1ab/nsp31217G1217EgGagAa11B.1.5960.000087
ORF1ab/nsp31217G1217EgGagAa11B.1.6000.005848
ORF1ab/nsp31217G1217RGgaAga11B.1.619.10.000641
ORF1ab/nsp31217G1217RGgaAga11B.1.6290.013333
ORF1ab/nsp31217G1217delGGA---11B.1.6300.005236
ORF1ab/nsp31217G1217RGgaAga11B.1.6370.000073
ORF1ab/nsp31217G1217SGGaTCa11C.350.000774
ORF1ab/nsp31217G1217GggAggG11C.370.000116
ORF1ab/nsp31217G1217GggAggC11D.20.000075
ORF1ab/nsp31217G1217EgGagAa11D.20.000075
ORF1ab/nsp31217G1217RGgaAga11P.1.140.000048
ORF1ab/nsp31217G1217EgGagAa11P.1.150.000232
ORF1ab/nsp31217G1217RGgaAga11P.20.000187
ORF1ab/nsp31217G1217delGGA---11P.20.000187
ORF1ab/nsp31217G1217XGgaTga11Q.40.000455
ORF1ab/nsp31217G1217delGGA---11Q.80.000165
ORF1ab/nsp31217G1217VgGagTa11R.10.00009