CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1217 | G1217R | G2035R | nonsyn | Gga | Aga | 975 | 975 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217E | G2035E | nonsyn | gGa | gAa | 310 | 310 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217del | G2035del | del | GGA | --- | 223 | 223 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217V | G2035V | nonsyn | gGa | gTa | 131 | 131 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217G | G2035G | syn | ggA | ggG | 100 | 79 | 0.79 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217G | G2035G | syn | ggA | ggC | 100 | 11 | 0.11 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217G | G2035G | syn | ggA | ggT | 100 | 10 | 0.1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217A | G2035A | nonsyn | gGa | gCa | 6 | 6 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217X | G2035X | nonsyn | Gga | Tga | 5 | 5 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217del1 | G2035del1 | del | ggA | gg- | 1 | 1 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217del2 | G2035del2 | del | GGa | --a | 1 | 1 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217W | G2035W | nonsyn | GgA | TgG | 1 | 1 | 1 | 6368-6370 |
ORF1ab/nsp3 | 1217 | G1217S | G2035S | nonsyn | GGa | TCa | 1 | 1 | 1 | 6368-6370 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 975 | 975 | All | 0.000186 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 310 | 310 | All | 0.000059 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 223 | 223 | All | 0.000043 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 131 | 131 | All | 0.000025 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 118 | 118 | B.1.1.7 | 0.000106 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 117 | 117 | AY.4 | 0.000182 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 108 | 108 | B.1.620 | 0.102176 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 103 | 103 | B.1.1.7 | 0.000092 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 79 | 100 | All | 0.000015 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 11 | 100 | All | 0.000002 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 10 | 100 | All | 0.000002 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 77 | 77 | AY.43 | 0.000341 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 65 | 65 | B.1.1.222 | 0.01326 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 61 | 61 | P.1 | 0.000961 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 45 | 45 | AY.39.1 | 0.001783 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 45 | 45 | B.1 | 0.000412 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 34 | 34 | B.1.621 | 0.00301 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 28 | 28 | B.1.1.382 | 1 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 21 | 21 | AY.46.5 | 0.004167 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 13 | 13 | B.1.526 | 0.000306 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 11 | 11 | B.1.177.3 | 0.083969 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 10 | 10 | B.1.351.5 | 0.005995 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 7 | 9 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 9 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 1 | 9 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp3 | 1217 | G1217A | gGa | gCa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1217 | G1217X | Gga | Tga | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 5 | 5 | B.1.177.83 | 0.007407 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1217 | G1217A | gGa | gCa | 3 | 3 | A.2.4 | 0.010101 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217X | Gga | Tga | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 2 | 2 | B.1.1.227 | 0.008696 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | B.1.1.98 | 0.037037 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 2 | 2 | B.1.221.4 | 0.008333 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 2 | 2 | C.2 | 0.032258 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp3 | 1217 | G1217A | gGa | gCa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1217 | G1217W | GgA | TgG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1217 | G1217S | GGa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1217 | G1217del2 | GGa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1217 | G1217del1 | ggA | gg- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1217 | G1217W | GgA | TgG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1217 | G1217A | gGa | gCa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1217 | G1217del1 | ggA | gg- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1217 | G1217A | gGa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1217 | G1217X | Gga | Tga | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggT | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1217 | G1217del2 | GGa | --a | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1217 | G1217X | Gga | Tga | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1217 | G1217S | GGa | TCa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1217 | G1217G | ggA | ggC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1217 | G1217E | gGa | gAa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1217 | G1217R | Gga | Aga | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1217 | G1217X | Gga | Tga | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1217 | G1217del | GGA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1217 | G1217V | gGa | gTa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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