CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1214

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31214D1214DD2032DsyngaCgaT3358335816359-6361
ORF1ab/nsp31214D1214ND2032NnonsynGacAac6386370.9984336359-6361
ORF1ab/nsp31214D1214ND2032NnonsynGaCAaT63810.00156746359-6361
ORF1ab/nsp31214D1214YD2032YnonsynGacTac22722716359-6361
ORF1ab/nsp31214D1214delD2032deldelGAC---22422416359-6361
ORF1ab/nsp31214D1214GD2032GnonsyngAcgGc2192160.9863016359-6361
ORF1ab/nsp31214D1214GD2032GnonsyngACgGA21920.009132426359-6361
ORF1ab/nsp31214D1214GD2032GnonsyngACgGT21910.004566216359-6361
ORF1ab/nsp31214D1214ED2032EnonsyngaCgaA32310.968756359-6361
ORF1ab/nsp31214D1214ED2032EnonsyngaCgaG3210.031256359-6361
ORF1ab/nsp31214D1214AD2032AnonsyngAcgCc272716359-6361
ORF1ab/nsp31214D1214VD2032VnonsyngAcgTc950.5555566359-6361
ORF1ab/nsp31214D1214VD2032VnonsyngACgTA930.3333336359-6361
ORF1ab/nsp31214D1214VD2032VnonsyngACgTT910.1111116359-6361
ORF1ab/nsp31214D1214ID2032InonsynGAcATc730.4285716359-6361
ORF1ab/nsp31214D1214ID2032InonsynGACATA730.4285716359-6361
ORF1ab/nsp31214D1214ID2032InonsynGACATT710.1428576359-6361
ORF1ab/nsp31214D1214HD2032HnonsynGacCac5516359-6361
ORF1ab/nsp31214D1214SD2032SnonsynGAcAGc520.46359-6361
ORF1ab/nsp31214D1214SD2032SnonsynGACAGT520.46359-6361
ORF1ab/nsp31214D1214SD2032SnonsynGACTCT510.26359-6361
ORF1ab/nsp31214D1214KD2032KnonsynGaCAaA4416359-6361
ORF1ab/nsp31214D1214del1D2032del1delgaCga-430.756359-6361
ORF1ab/nsp31214D1214del1D2032del1delGac-ac410.256359-6361
ORF1ab/nsp31214D1214RD2032RnonsynGACAGA320.6666676359-6361
ORF1ab/nsp31214D1214RD2032RnonsynGACAGG310.3333336359-6361
ORF1ab/nsp31214D1214XD2032XnonsynGaCTaA1116359-6361
ORF1ab/nsp31214D1214TD2032TnonsynGAcACc1116359-6361

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31214D1214DgaCgaT33583358All0.000642
ORF1ab/nsp31214D1214NGacAac637638All0.000122
ORF1ab/nsp31214D1214NGaCAaT1638All0
ORF1ab/nsp31214D1214DgaCgaT583583B.1.1.70.000522
ORF1ab/nsp31214D1214DgaCgaT501501AY.40.00078
ORF1ab/nsp31214D1214DgaCgaT376376B.1.4290.008847
ORF1ab/nsp31214D1214DgaCgaT287287B.1.466.20.112285
ORF1ab/nsp31214D1214YGacTac227227All0.000043
ORF1ab/nsp31214D1214delGAC---224224All0.000043
ORF1ab/nsp31214D1214GgAcgGc216219All0.000041
ORF1ab/nsp31214D1214GgACgGA2219All0
ORF1ab/nsp31214D1214GgACgGT1219All0
ORF1ab/nsp31214D1214NGacAac208208B.1.1.70.000186
ORF1ab/nsp31214D1214DgaCgaT159159B.1.617.20.000599
ORF1ab/nsp31214D1214DgaCgaT142142AY.30.001412
ORF1ab/nsp31214D1214GgAcgGc9999B.1.1.3800.970588
ORF1ab/nsp31214D1214DgaCgaT9898B.1.2430.006819
ORF1ab/nsp31214D1214DgaCgaT7373AY.250.000439
ORF1ab/nsp31214D1214DgaCgaT6161P.1.150.014173
ORF1ab/nsp31214D1214DgaCgaT5858AY.440.000353
ORF1ab/nsp31214D1214NGacAac5555B.1.2180.283505
ORF1ab/nsp31214D1214DgaCgaT5151AY.430.000226
ORF1ab/nsp31214D1214NGacAac4646AY.40.000072
ORF1ab/nsp31214D1214DgaCgaT4545AY.1030.000279
ORF1ab/nsp31214D1214DgaCgaT4343B.1.10.00078
ORF1ab/nsp31214D1214DgaCgaT4141AY.330.002738
ORF1ab/nsp31214D1214NGacAac4040B.1.617.20.000151
ORF1ab/nsp31214D1214DgaCgaT3939B.1.20.000343
ORF1ab/nsp31214D1214delGAC---3838AY.40.000059
ORF1ab/nsp31214D1214YGacTac3737B.1.5260.00087
ORF1ab/nsp31214D1214DgaCgaT3636AY.1070.016775
ORF1ab/nsp31214D1214NGacAac3334AY.250.000198
ORF1ab/nsp31214D1214NGaCAaT134AY.250.000006
ORF1ab/nsp31214D1214EgaCgaA3132All0.000006
ORF1ab/nsp31214D1214EgaCgaG132All0
ORF1ab/nsp31214D1214DgaCgaT3232AY.1000.001472
ORF1ab/nsp31214D1214DgaCgaT3232B.1.1.3180.009656
ORF1ab/nsp31214D1214YGacTac3232B.1.1.70.000029
ORF1ab/nsp31214D1214DgaCgaT2929B.10.000266
ORF1ab/nsp31214D1214NGacAac2929B.10.000266
ORF1ab/nsp31214D1214AgAcgCc2727All0.000005
ORF1ab/nsp31214D1214DgaCgaT2727AY.9.20.000992
ORF1ab/nsp31214D1214DgaCgaT2727B.1.2580.001797
ORF1ab/nsp31214D1214GgAcgGc2727P.10.000425
ORF1ab/nsp31214D1214DgaCgaT2424B.1.177.661
ORF1ab/nsp31214D1214delGAC---2424B.1.617.20.00009
ORF1ab/nsp31214D1214DgaCgaT2424P.10.000378
ORF1ab/nsp31214D1214NGacAac2222B.1.1770.00029
ORF1ab/nsp31214D1214YGacTac2121AY.40.000033
ORF1ab/nsp31214D1214delGAC---2121AY.46.50.004167
ORF1ab/nsp31214D1214NGacAac1919AY.260.000538
ORF1ab/nsp31214D1214YGacTac1919B.1.438.10.002038
ORF1ab/nsp31214D1214DgaCgaT1818AY.1020.000477
ORF1ab/nsp31214D1214DgaCgaT1818B.1.1600.000561
ORF1ab/nsp31214D1214DgaCgaT1717AY.3.10.001449
ORF1ab/nsp31214D1214DgaCgaT1717AY.98.10.000823
ORF1ab/nsp31214D1214GgAcgGc1717B.1.1.70.000015
ORF1ab/nsp31214D1214DgaCgaT1616AY.610.001676
ORF1ab/nsp31214D1214NGacAac1515AY.1200.000558
ORF1ab/nsp31214D1214NGacAac1515AY.50.00031
ORF1ab/nsp31214D1214DgaCgaT1414AY.260.000396
ORF1ab/nsp31214D1214delGAC---1414AY.440.000085
ORF1ab/nsp31214D1214delGAC---1313AY.1000.000598
ORF1ab/nsp31214D1214DgaCgaT1313AY.160.004935
ORF1ab/nsp31214D1214GgAcgGc1013AY.250.00006
ORF1ab/nsp31214D1214GgACgGA213AY.250.000012
ORF1ab/nsp31214D1214GgACgGT113AY.250.000006
ORF1ab/nsp31214D1214NGacAac1313AY.390.000321
ORF1ab/nsp31214D1214NGacAac1313AY.440.000079
ORF1ab/nsp31214D1214delGAC---1313B.1.1.70.000012
ORF1ab/nsp31214D1214DgaCgaT1313B.1.5260.000306
ORF1ab/nsp31214D1214DgaCgaT1212Q.30.00174
ORF1ab/nsp31214D1214NGacAac1111AY.1020.000292
ORF1ab/nsp31214D1214NGacAac1111AY.30.000109
ORF1ab/nsp31214D1214DgaCgaT1111AY.390.000272
ORF1ab/nsp31214D1214DgaCgaT1111AY.410.003233
ORF1ab/nsp31214D1214NGacAac1111AY.610.001153
ORF1ab/nsp31214D1214YGacTac1111B.10.000101
ORF1ab/nsp31214D1214DgaCgaT1111B.1.1.4220.5
ORF1ab/nsp31214D1214delGAC---1111B.1.177.30.083969
ORF1ab/nsp31214D1214DgaCgaT1111B.1.177.810.002083
ORF1ab/nsp31214D1214YGacTac1010AY.250.00006
ORF1ab/nsp31214D1214EgaCgaA1010AY.250.00006
ORF1ab/nsp31214D1214DgaCgaT1010AY.780.015408
ORF1ab/nsp31214D1214GgAcgGc1010B.1.617.20.000038
ORF1ab/nsp31214D1214VgAcgTc59All0.000001
ORF1ab/nsp31214D1214VgACgTA39All0.000001
ORF1ab/nsp31214D1214VgACgTT19All0
ORF1ab/nsp31214D1214NGacAac99AY.430.00004
ORF1ab/nsp31214D1214YGacTac99AY.430.00004
ORF1ab/nsp31214D1214NGacAac99B.1.10.000163
ORF1ab/nsp31214D1214DgaCgaT99B.1.1.10.00294
ORF1ab/nsp31214D1214DgaCgaT99B.1.1.2650.028391
ORF1ab/nsp31214D1214YGacTac99B.1.1.5190.000357
ORF1ab/nsp31214D1214DgaCgaT88AY.1200.000297
ORF1ab/nsp31214D1214YGacTac88AY.1200.000297
ORF1ab/nsp31214D1214DgaCgaT88AY.46.60.000578
ORF1ab/nsp31214D1214DgaCgaT88B.1.177.240.010363
ORF1ab/nsp31214D1214NGacAac88B.1.177.620.009535
ORF1ab/nsp31214D1214DgaCgaT88B.1.5880.007279
ORF1ab/nsp31214D1214DgaCgaT88B.1.6270.016162
ORF1ab/nsp31214D1214IGAcATc37All0.000001
ORF1ab/nsp31214D1214IGACATA37All0.000001
ORF1ab/nsp31214D1214IGACATT17All0
ORF1ab/nsp31214D1214NGacAac77AY.1160.002007
ORF1ab/nsp31214D1214IGACATA37AY.250.000018
ORF1ab/nsp31214D1214VgACgTA37AY.250.000018
ORF1ab/nsp31214D1214IGAcATc37AY.250.000018
ORF1ab/nsp31214D1214VgAcgTc37AY.250.000018
ORF1ab/nsp31214D1214VgACgTT17AY.250.000006
ORF1ab/nsp31214D1214IGACATT17AY.250.000006
ORF1ab/nsp31214D1214AgAcgCc77AY.440.000043
ORF1ab/nsp31214D1214DgaCgaT77AY.50.000145
ORF1ab/nsp31214D1214DgaCgaT77AY.540.000667
ORF1ab/nsp31214D1214NGacAac77AY.9.10.000586
ORF1ab/nsp31214D1214DgaCgaT77B.1.177.110.011885
ORF1ab/nsp31214D1214DgaCgaT77B.1.3510.000208
ORF1ab/nsp31214D1214YGacTac77D.20.000525
ORF1ab/nsp31214D1214DgaCgaT77Q.80.001154
ORF1ab/nsp31214D1214DgaCgaT66AY.200.000233
ORF1ab/nsp31214D1214YGacTac66AY.60.000247
ORF1ab/nsp31214D1214GgAcgGc66B.10.000055
ORF1ab/nsp31214D1214DgaCgaT66B.1.1.4340.002091
ORF1ab/nsp31214D1214DgaCgaT66B.1.1770.000079
ORF1ab/nsp31214D1214DgaCgaT66B.1.177.400.030928
ORF1ab/nsp31214D1214delGAC---66B.1.177.830.008889
ORF1ab/nsp31214D1214DgaCgaT66B.1.36.180.002521
ORF1ab/nsp31214D1214HGacCac55All0.000001
ORF1ab/nsp31214D1214SGACAGT25All0
ORF1ab/nsp31214D1214SGAcAGc25All0
ORF1ab/nsp31214D1214SGACTCT15All0
ORF1ab/nsp31214D1214DgaCgaT55AY.340.000485
ORF1ab/nsp31214D1214DgaCgaT55AY.360.000741
ORF1ab/nsp31214D1214GgAcgGc55AY.40.000008
ORF1ab/nsp31214D1214DgaCgaT55AY.420.000201
ORF1ab/nsp31214D1214DgaCgaT55AY.60.000206
ORF1ab/nsp31214D1214delGAC---55B.10.000046
ORF1ab/nsp31214D1214DgaCgaT55B.1.3690.001426
ORF1ab/nsp31214D1214DgaCgaT55B.1.4690.018051
ORF1ab/nsp31214D1214DgaCgaT55B.1.5960.000436
ORF1ab/nsp31214D1214KGaCAaA44All0.000001
ORF1ab/nsp31214D1214del1gaCga-34All0.000001
ORF1ab/nsp31214D1214del1Gac-ac14All0
ORF1ab/nsp31214D1214DgaCgaT44AY.1180.000251
ORF1ab/nsp31214D1214DgaCgaT44AY.130.000644
ORF1ab/nsp31214D1214KGaCAaA44AY.250.000024
ORF1ab/nsp31214D1214NGacAac44AY.340.000388
ORF1ab/nsp31214D1214delGAC---44AY.390.000099
ORF1ab/nsp31214D1214AgAcgCc44B.1.1.70.000004
ORF1ab/nsp31214D1214DgaCgaT44B.1.110.30.002874
ORF1ab/nsp31214D1214delGAC---44B.1.1770.000053
ORF1ab/nsp31214D1214DgaCgaT44B.1.177.120.000607
ORF1ab/nsp31214D1214delGAC---44B.1.2340.000528
ORF1ab/nsp31214D1214NGacAac44B.1.4040.005208
ORF1ab/nsp31214D1214DgaCgaT44B.1.4270.000202
ORF1ab/nsp31214D1214YGacTac44B.1.617.20.000015
ORF1ab/nsp31214D1214DgaCgaT44B.1.6210.000354
ORF1ab/nsp31214D1214DgaCgaT44C.370.000464
ORF1ab/nsp31214D1214delGAC---44P.10.000063
ORF1ab/nsp31214D1214delGAC---44P.1.140.000191
ORF1ab/nsp31214D1214RGACAGA23All0
ORF1ab/nsp31214D1214RGACAGG13All0
ORF1ab/nsp31214D1214YGacTac33AY.1020.00008
ORF1ab/nsp31214D1214GgAcgGc33AY.1020.00008
ORF1ab/nsp31214D1214YGacTac33AY.1030.000019
ORF1ab/nsp31214D1214DgaCgaT33AY.1170.000254
ORF1ab/nsp31214D1214DgaCgaT33AY.140.000264
ORF1ab/nsp31214D1214YGacTac33AY.200.000117
ORF1ab/nsp31214D1214DgaCgaT33AY.240.001293
ORF1ab/nsp31214D1214delGAC---33AY.250.000018
ORF1ab/nsp31214D1214SGAcAGc23AY.250.000012
ORF1ab/nsp31214D1214SGACAGT13AY.250.000006
ORF1ab/nsp31214D1214DgaCgaT33AY.290.000047
ORF1ab/nsp31214D1214YGacTac33AY.30.00003
ORF1ab/nsp31214D1214YGacTac33AY.340.000291
ORF1ab/nsp31214D1214EgaCgaA33AY.40.000005
ORF1ab/nsp31214D1214AgAcgCc33AY.40.000005
ORF1ab/nsp31214D1214DgaCgaT33AY.4.20.000065
ORF1ab/nsp31214D1214EgaCgaA33AY.450.000365
ORF1ab/nsp31214D1214DgaCgaT33AY.460.000312
ORF1ab/nsp31214D1214DgaCgaT33AY.640.001786
ORF1ab/nsp31214D1214NGacAac33AY.770.003382
ORF1ab/nsp31214D1214DgaCgaT33B.1.1.2140.000166
ORF1ab/nsp31214D1214DgaCgaT33B.1.1.2220.000612
ORF1ab/nsp31214D1214DgaCgaT33B.1.1.280.000934
ORF1ab/nsp31214D1214NGacAac33B.1.1.5190.000119
ORF1ab/nsp31214D1214DgaCgaT33B.1.1.570.034483
ORF1ab/nsp31214D1214EgaCgaA23B.1.1.70.000002
ORF1ab/nsp31214D1214EgaCgaG13B.1.1.70.000001
ORF1ab/nsp31214D1214YGacTac33B.1.177.160.001993
ORF1ab/nsp31214D1214DgaCgaT33B.1.177.40.000633
ORF1ab/nsp31214D1214DgaCgaT33B.1.177.570.000843
ORF1ab/nsp31214D1214YGacTac33B.1.20.000026
ORF1ab/nsp31214D1214DgaCgaT33B.1.2210.000213
ORF1ab/nsp31214D1214DgaCgaT33B.1.36.290.001552
ORF1ab/nsp31214D1214NGacAac33B.1.4290.000071
ORF1ab/nsp31214D1214DgaCgaT33B.1.4970.000944
ORF1ab/nsp31214D1214DgaCgaT33B.1.5170.001281
ORF1ab/nsp31214D1214DgaCgaT33B.1.6100.010638
ORF1ab/nsp31214D1214EgaCgaA33B.1.617.20.000011
ORF1ab/nsp31214D1214DgaCgaT33C.160.003181
ORF1ab/nsp31214D1214DgaCgaT22A.10.000564
ORF1ab/nsp31214D1214DgaCgaT22A.20.001324
ORF1ab/nsp31214D1214NGacAac22AD.20.000438
ORF1ab/nsp31214D1214NGacAac22AY.1030.000012
ORF1ab/nsp31214D1214DgaCgaT22AY.1090.001479
ORF1ab/nsp31214D1214GgAcgGc22AY.1160.000574
ORF1ab/nsp31214D1214NGacAac22AY.1190.000071
ORF1ab/nsp31214D1214DgaCgaT22AY.120.20.002571
ORF1ab/nsp31214D1214DgaCgaT22AY.1210.000271
ORF1ab/nsp31214D1214delGAC---22AY.1210.000271
ORF1ab/nsp31214D1214delGAC---22AY.230.000139
ORF1ab/nsp31214D1214DgaCgaT22AY.230.000139
ORF1ab/nsp31214D1214RGACAGA22AY.250.000012
ORF1ab/nsp31214D1214delGAC---22AY.290.000032
ORF1ab/nsp31214D1214NGacAac22AY.360.000296
ORF1ab/nsp31214D1214DgaCgaT22AY.39.10.000079
ORF1ab/nsp31214D1214GgAcgGc22AY.440.000012
ORF1ab/nsp31214D1214DgaCgaT22AY.450.000243
ORF1ab/nsp31214D1214DgaCgaT22AY.470.000062
ORF1ab/nsp31214D1214GgAcgGc22AY.510.001818
ORF1ab/nsp31214D1214NGacAac22AY.550.001835
ORF1ab/nsp31214D1214YGacTac22AY.750.000112
ORF1ab/nsp31214D1214DgaCgaT22AY.75.10.000361
ORF1ab/nsp31214D1214DgaCgaT22AY.950.001522
ORF1ab/nsp31214D1214DgaCgaT22AY.980.000158
ORF1ab/nsp31214D1214NGacAac22AY.980.000158
ORF1ab/nsp31214D1214EgaCgaA22AZ.20.001642
ORF1ab/nsp31214D1214DgaCgaT22B0.000256
ORF1ab/nsp31214D1214delGAC---22B.1.10.000036
ORF1ab/nsp31214D1214YGacTac22B.1.10.000036
ORF1ab/nsp31214D1214GgAcgGc22B.1.10.000036
ORF1ab/nsp31214D1214DgaCgaT22B.1.1.1530.002191
ORF1ab/nsp31214D1214DgaCgaT22B.1.1.1760.000879
ORF1ab/nsp31214D1214AgAcgCc22B.1.1.2220.000408
ORF1ab/nsp31214D1214NGacAac22B.1.1.250.001137
ORF1ab/nsp31214D1214GgAcgGc22B.1.1.3890.012121
ORF1ab/nsp31214D1214delGAC---22B.1.1.980.037037
ORF1ab/nsp31214D1214GgAcgGc22B.1.1490.006849
ORF1ab/nsp31214D1214DgaCgaT22B.1.177.320.002699
ORF1ab/nsp31214D1214DgaCgaT22B.1.177.550.004662
ORF1ab/nsp31214D1214DgaCgaT22B.1.177.70.00033
ORF1ab/nsp31214D1214NGacAac22B.1.20.000018
ORF1ab/nsp31214D1214delGAC---22B.1.2210.000142
ORF1ab/nsp31214D1214DgaCgaT22B.1.2340.000264
ORF1ab/nsp31214D1214delGAC---22B.1.2580.000133
ORF1ab/nsp31214D1214DgaCgaT22B.1.3750.001639
ORF1ab/nsp31214D1214DgaCgaT22B.1.3960.001411
ORF1ab/nsp31214D1214DgaCgaT22B.1.4360.002058
ORF1ab/nsp31214D1214DgaCgaT22B.1.438.10.000215
ORF1ab/nsp31214D1214DgaCgaT22B.1.5250.000226
ORF1ab/nsp31214D1214delGAC---22B.1.5250.000226
ORF1ab/nsp31214D1214DgaCgaT22B.1.564.10.003155
ORF1ab/nsp31214D1214NGacAac22B.1.5960.000174
ORF1ab/nsp31214D1214GgAcgGc22B.1.6090.000959
ORF1ab/nsp31214D1214AgAcgCc22B.1.617.20.000008
ORF1ab/nsp31214D1214DgaCgaT22B.1.6220.025974
ORF1ab/nsp31214D1214DgaCgaT22C.10.004785
ORF1ab/nsp31214D1214delGAC---22C.20.032258
ORF1ab/nsp31214D1214DgaCgaT22C.36.3.10.005435
ORF1ab/nsp31214D1214DgaCgaT22D.20.00015
ORF1ab/nsp31214D1214AgAcgCc22P.10.000032
ORF1ab/nsp31214D1214NGacAac22P.10.000032
ORF1ab/nsp31214D1214DgaCgaT22P.1.110.020408
ORF1ab/nsp31214D1214DgaCgaT22P.1.140.000096
ORF1ab/nsp31214D1214YGacTac11A0.000387
ORF1ab/nsp31214D1214GgAcgGc11A.10.000282
ORF1ab/nsp31214D1214AgAcgCc11A.2.40.003367
ORF1ab/nsp31214D1214NGacAac11AA.50.016129
ORF1ab/nsp31214D1214DgaCgaT11AD.20.000219
ORF1ab/nsp31214D1214TGAcACc11All0
ORF1ab/nsp31214D1214XGaCTaA11All0
ORF1ab/nsp31214D1214del1gaCga-11AU.10.001266
ORF1ab/nsp31214D1214DgaCgaT11AY.100.00053
ORF1ab/nsp31214D1214delGAC---11AY.1010.00049
ORF1ab/nsp31214D1214HGacCac11AY.1030.000006
ORF1ab/nsp31214D1214delGAC---11AY.1030.000006
ORF1ab/nsp31214D1214DgaCgaT11AY.1060.000335
ORF1ab/nsp31214D1214delGAC---11AY.1080.001103
ORF1ab/nsp31214D1214YGacTac11AY.1130.000142
ORF1ab/nsp31214D1214DgaCgaT11AY.1130.000142
ORF1ab/nsp31214D1214NGacAac11AY.1180.000063
ORF1ab/nsp31214D1214VgAcgTc11AY.1200.000037
ORF1ab/nsp31214D1214del1Gac-ac11AY.120.10.000321
ORF1ab/nsp31214D1214NGacAac11AY.140.000088
ORF1ab/nsp31214D1214DgaCgaT11AY.16.10.00047
ORF1ab/nsp31214D1214YGacTac11AY.230.00007
ORF1ab/nsp31214D1214delGAC---11AY.240.000431
ORF1ab/nsp31214D1214XGaCTaA11AY.250.000006
ORF1ab/nsp31214D1214GgAcgGc11AY.290.000016
ORF1ab/nsp31214D1214DgaCgaT11AY.29.10.000221
ORF1ab/nsp31214D1214GgAcgGc11AY.30.00001
ORF1ab/nsp31214D1214EgaCgaA11AY.30.00001
ORF1ab/nsp31214D1214YGacTac11AY.3.10.000085
ORF1ab/nsp31214D1214NGacAac11AY.330.000067
ORF1ab/nsp31214D1214delGAC---11AY.330.000067
ORF1ab/nsp31214D1214YGacTac11AY.330.000067
ORF1ab/nsp31214D1214DgaCgaT11AY.34.10.00051
ORF1ab/nsp31214D1214YGacTac11AY.390.000025
ORF1ab/nsp31214D1214SGACTCT11AY.390.000025
ORF1ab/nsp31214D1214GgAcgGc11AY.390.000025
ORF1ab/nsp31214D1214NGacAac11AY.39.10.00004
ORF1ab/nsp31214D1214VgAcgTc11AY.40.000002
ORF1ab/nsp31214D1214del1gaCga-11AY.40.000002
ORF1ab/nsp31214D1214HGacCac11AY.40.000002
ORF1ab/nsp31214D1214NGacAac11AY.4.20.000022
ORF1ab/nsp31214D1214YGacTac11AY.4.20.000022
ORF1ab/nsp31214D1214NGacAac11AY.420.00004
ORF1ab/nsp31214D1214EgaCgaA11AY.430.000004
ORF1ab/nsp31214D1214delGAC---11AY.430.000004
ORF1ab/nsp31214D1214delGAC---11AY.450.000122
ORF1ab/nsp31214D1214delGAC---11AY.460.000104
ORF1ab/nsp31214D1214YGacTac11AY.460.000104
ORF1ab/nsp31214D1214GgAcgGc11AY.460.000104
ORF1ab/nsp31214D1214DgaCgaT11AY.46.40.000165
ORF1ab/nsp31214D1214YGacTac11AY.46.60.000072
ORF1ab/nsp31214D1214GgAcgGc11AY.46.60.000072
ORF1ab/nsp31214D1214delGAC---11AY.470.000031
ORF1ab/nsp31214D1214GgAcgGc11AY.470.000031
ORF1ab/nsp31214D1214delGAC---11AY.490.003195
ORF1ab/nsp31214D1214delGAC---11AY.50.000021
ORF1ab/nsp31214D1214DgaCgaT11AY.5.40.000277
ORF1ab/nsp31214D1214YGacTac11AY.540.000095
ORF1ab/nsp31214D1214DgaCgaT11AY.550.000917
ORF1ab/nsp31214D1214DgaCgaT11AY.560.001605
ORF1ab/nsp31214D1214DgaCgaT11AY.590.00053
ORF1ab/nsp31214D1214YGacTac11AY.630.000387
ORF1ab/nsp31214D1214DgaCgaT11AY.650.000533
ORF1ab/nsp31214D1214DgaCgaT11AY.660.00107
ORF1ab/nsp31214D1214delGAC---11AY.660.00107
ORF1ab/nsp31214D1214AgAcgCc11AY.710.000475
ORF1ab/nsp31214D1214delGAC---11AY.740.000116
ORF1ab/nsp31214D1214NGacAac11AY.750.000056
ORF1ab/nsp31214D1214DgaCgaT11AY.750.000056
ORF1ab/nsp31214D1214NGacAac11AY.75.10.00018
ORF1ab/nsp31214D1214RGACAGG11AY.790.001211
ORF1ab/nsp31214D1214DgaCgaT11AY.850.000427
ORF1ab/nsp31214D1214DgaCgaT11AY.890.004902
ORF1ab/nsp31214D1214EgaCgaA11AY.9.20.000037
ORF1ab/nsp31214D1214DgaCgaT11AY.900.000684
ORF1ab/nsp31214D1214YGacTac11AY.920.000287
ORF1ab/nsp31214D1214DgaCgaT11AY.940.000443
ORF1ab/nsp31214D1214NGacAac11AY.950.000761
ORF1ab/nsp31214D1214DgaCgaT11AY.960.002075
ORF1ab/nsp31214D1214delGAC---11AY.990.001049
ORF1ab/nsp31214D1214YGacTac11AY.99.20.000092
ORF1ab/nsp31214D1214AgAcgCc11AY.99.20.000092
ORF1ab/nsp31214D1214GgAcgGc11AZ.20.000821
ORF1ab/nsp31214D1214DgaCgaT11AZ.30.00152
ORF1ab/nsp31214D1214EgaCgaA11B.10.000009
ORF1ab/nsp31214D1214delGAC---11B.1.1.100.001115
ORF1ab/nsp31214D1214delGAC---11B.1.1.1590.004673
ORF1ab/nsp31214D1214GgAcgGc11B.1.1.1720.018182
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.2070.001182
ORF1ab/nsp31214D1214delGAC---11B.1.1.2140.000055
ORF1ab/nsp31214D1214NGacAac11B.1.1.2160.00089
ORF1ab/nsp31214D1214YGacTac11B.1.1.2160.00089
ORF1ab/nsp31214D1214delGAC---11B.1.1.2220.000204
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.2770.000759
ORF1ab/nsp31214D1214YGacTac11B.1.1.280.000311
ORF1ab/nsp31214D1214HGacCac11B.1.1.3060.000438
ORF1ab/nsp31214D1214GgAcgGc11B.1.1.3110.000358
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.3120.001912
ORF1ab/nsp31214D1214GgAcgGc11B.1.1.3120.001912
ORF1ab/nsp31214D1214YGacTac11B.1.1.3180.000302
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.330.000421
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.3350.012987
ORF1ab/nsp31214D1214delGAC---11B.1.1.3480.000796
ORF1ab/nsp31214D1214NGacAac11B.1.1.370.000193
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.3980.003226
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4060.006494
ORF1ab/nsp31214D1214YGacTac11B.1.1.4090.002833
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4160.000905
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4290.004608
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4320.001266
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4330.001425
ORF1ab/nsp31214D1214GgAcgGc11B.1.1.4640.001473
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.4870.005587
ORF1ab/nsp31214D1214delGAC---11B.1.1.5190.00004
ORF1ab/nsp31214D1214EgaCgaA11B.1.1.5190.00004
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.5190.00004
ORF1ab/nsp31214D1214delGAC---11B.1.1.520.012195
ORF1ab/nsp31214D1214delGAC---11B.1.1.5240.020833
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp31214D1214del1gaCga-11B.1.1.70.000001
ORF1ab/nsp31214D1214HGacCac11B.1.1.70.000001
ORF1ab/nsp31214D1214DgaCgaT11B.1.1.740.00431
ORF1ab/nsp31214D1214DgaCgaT11B.1.130.002375
ORF1ab/nsp31214D1214delGAC---11B.1.1600.000031
ORF1ab/nsp31214D1214DgaCgaT11B.1.160.260.002421
ORF1ab/nsp31214D1214DgaCgaT11B.1.1660.008475
ORF1ab/nsp31214D1214EgaCgaA11B.1.1770.000013
ORF1ab/nsp31214D1214GgAcgGc11B.1.1770.000013
ORF1ab/nsp31214D1214YGacTac11B.1.1770.000013
ORF1ab/nsp31214D1214SGACAGT11B.1.1770.000013
ORF1ab/nsp31214D1214YGacTac11B.1.177.180.00116
ORF1ab/nsp31214D1214delGAC---11B.1.177.350.000691
ORF1ab/nsp31214D1214NGacAac11B.1.177.420.000894
ORF1ab/nsp31214D1214delGAC---11B.1.177.450.000381
ORF1ab/nsp31214D1214DgaCgaT11B.1.177.530.002392
ORF1ab/nsp31214D1214GgAcgGc11B.1.177.580.001332
ORF1ab/nsp31214D1214YGacTac11B.1.177.600.000218
ORF1ab/nsp31214D1214DgaCgaT11B.1.177.600.000218
ORF1ab/nsp31214D1214delGAC---11B.1.177.620.001192
ORF1ab/nsp31214D1214GgAcgGc11B.1.177.750.001041
ORF1ab/nsp31214D1214delGAC---11B.1.177.810.000189
ORF1ab/nsp31214D1214DgaCgaT11B.1.177.820.000477
ORF1ab/nsp31214D1214DgaCgaT11B.1.1980.071429
ORF1ab/nsp31214D1214GgAcgGc11B.1.20.000009
ORF1ab/nsp31214D1214delGAC---11B.1.20.000009
ORF1ab/nsp31214D1214EgaCgaA11B.1.2210.000071
ORF1ab/nsp31214D1214HGacCac11B.1.2220.001692
ORF1ab/nsp31214D1214DgaCgaT11B.1.2320.000537
ORF1ab/nsp31214D1214GgAcgGc11B.1.2320.000537
ORF1ab/nsp31214D1214DgaCgaT11B.1.2390.001221
ORF1ab/nsp31214D1214NGacAac11B.1.2430.00007
ORF1ab/nsp31214D1214DgaCgaT11B.1.258.140.00098
ORF1ab/nsp31214D1214delGAC---11B.1.258.170.000104
ORF1ab/nsp31214D1214DgaCgaT11B.1.258.170.000104
ORF1ab/nsp31214D1214YGacTac11B.1.2600.003344
ORF1ab/nsp31214D1214DgaCgaT11B.1.3110.000275
ORF1ab/nsp31214D1214DgaCgaT11B.1.3490.000715
ORF1ab/nsp31214D1214DgaCgaT11B.1.3560.001727
ORF1ab/nsp31214D1214delGAC---11B.1.360.000146
ORF1ab/nsp31214D1214YGacTac11B.1.360.000146
ORF1ab/nsp31214D1214DgaCgaT11B.1.360.000146
ORF1ab/nsp31214D1214DgaCgaT11B.1.36.190.009259
ORF1ab/nsp31214D1214GgAcgGc11B.1.36.70.004
ORF1ab/nsp31214D1214delGAC---11B.1.3820.008929
ORF1ab/nsp31214D1214DgaCgaT11B.1.4160.001269
ORF1ab/nsp31214D1214AgAcgCc11B.1.4160.001269
ORF1ab/nsp31214D1214GgAcgGc11B.1.4280.00102
ORF1ab/nsp31214D1214delGAC---11B.1.428.20.033333
ORF1ab/nsp31214D1214AgAcgCc11B.1.4290.000024
ORF1ab/nsp31214D1214delGAC---11B.1.4290.000024
ORF1ab/nsp31214D1214DgaCgaT11B.1.4530.003236
ORF1ab/nsp31214D1214DgaCgaT11B.1.4620.007246
ORF1ab/nsp31214D1214GgAcgGc11B.1.466.20.000391
ORF1ab/nsp31214D1214NGacAac11B.1.4690.00361
ORF1ab/nsp31214D1214DgaCgaT11B.1.4740.001901
ORF1ab/nsp31214D1214NGacAac11B.1.4990.00105
ORF1ab/nsp31214D1214GgAcgGc11B.1.5130.013889
ORF1ab/nsp31214D1214TGAcACc11B.1.5250.000113
ORF1ab/nsp31214D1214NGacAac11B.1.5260.000024
ORF1ab/nsp31214D1214delGAC---11B.1.5260.000024
ORF1ab/nsp31214D1214DgaCgaT11B.1.5300.007143
ORF1ab/nsp31214D1214GgAcgGc11B.1.5330.009615
ORF1ab/nsp31214D1214delGAC---11B.1.5610.000397
ORF1ab/nsp31214D1214GgAcgGc11B.1.5650.00081
ORF1ab/nsp31214D1214DgaCgaT11B.1.5670.003333
ORF1ab/nsp31214D1214DgaCgaT11B.1.5680.001111
ORF1ab/nsp31214D1214YGacTac11B.1.5950.000261
ORF1ab/nsp31214D1214YGacTac11B.1.5960.000087
ORF1ab/nsp31214D1214DgaCgaT11B.1.5970.00463
ORF1ab/nsp31214D1214DgaCgaT11B.1.6200.000946
ORF1ab/nsp31214D1214YGacTac11B.1.6210.000089
ORF1ab/nsp31214D1214DgaCgaT11B.1.621.10.000506
ORF1ab/nsp31214D1214delGAC---11B.1.6300.005236
ORF1ab/nsp31214D1214DgaCgaT11B.1.6350.017544
ORF1ab/nsp31214D1214DgaCgaT11B.1.6370.000073
ORF1ab/nsp31214D1214YGacTac11B.400.000364
ORF1ab/nsp31214D1214DgaCgaT11B.400.000364
ORF1ab/nsp31214D1214DgaCgaT11B.430.014286
ORF1ab/nsp31214D1214YGacTac11B.60.00091
ORF1ab/nsp31214D1214DgaCgaT11B.60.00091
ORF1ab/nsp31214D1214AgAcgCc11B.60.00091
ORF1ab/nsp31214D1214DgaCgaT11B.6.60.000889
ORF1ab/nsp31214D1214YGacTac11C.350.000774
ORF1ab/nsp31214D1214GgAcgGc11C.370.000116
ORF1ab/nsp31214D1214DgaCgaT11N.50.001767
ORF1ab/nsp31214D1214EgaCgaA11P.10.000016
ORF1ab/nsp31214D1214DgaCgaT11P.1.10.000318
ORF1ab/nsp31214D1214DgaCgaT11P.1.100.000269
ORF1ab/nsp31214D1214NGacAac11P.1.140.000048
ORF1ab/nsp31214D1214GgAcgGc11P.1.140.000048
ORF1ab/nsp31214D1214AgAcgCc11P.1.170.000162
ORF1ab/nsp31214D1214DgaCgaT11P.1.70.000319
ORF1ab/nsp31214D1214NGacAac11P.20.000187
ORF1ab/nsp31214D1214delGAC---11P.20.000187
ORF1ab/nsp31214D1214YGacTac11Q.30.000145
ORF1ab/nsp31214D1214delGAC---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.