CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1212

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31212S1212LS2030LnonsyntCatTa475447530.999796353-6355
ORF1ab/nsp31212S1212LS2030LnonsynTCaCTa475410.0002103496353-6355
ORF1ab/nsp31212S1212PS2030PnonsynTcaCca79479416353-6355
ORF1ab/nsp31212S1212SS2030SsyntcAtcT7103820.5380286353-6355
ORF1ab/nsp31212S1212SS2030SsyntcAtcG7102710.381696353-6355
ORF1ab/nsp31212S1212SS2030SsyntcAtcC710560.07887326353-6355
ORF1ab/nsp31212S1212SS2030SsynTCAAGT71010.001408456353-6355
ORF1ab/nsp31212S1212AS2030AnonsynTcaGca21421416353-6355
ORF1ab/nsp31212S1212delS2030deldelTCA---19119116353-6355
ORF1ab/nsp31212S1212XS2030XnonsyntCatAa29270.9310356353-6355
ORF1ab/nsp31212S1212XS2030XnonsyntCatGa2920.06896556353-6355
ORF1ab/nsp31212S1212TS2030TnonsynTcaAca20170.856353-6355
ORF1ab/nsp31212S1212TS2030TnonsynTcAAcT2030.156353-6355
ORF1ab/nsp31212S1212del1S2030del1deltcAtc-650.8333336353-6355
ORF1ab/nsp31212S1212del1S2030del1deltCAt-N610.1666676353-6355
ORF1ab/nsp31212S1212del2S2030del2deltCAt--430.756353-6355
ORF1ab/nsp31212S1212del2S2030del2delTCA--G410.256353-6355
ORF1ab/nsp31212S1212FS2030FnonsyntCAtTT3316353-6355
ORF1ab/nsp31212S1212IS2030InonsynTCaATa320.6666676353-6355
ORF1ab/nsp31212S1212IS2030InonsynTCAATT310.3333336353-6355
ORF1ab/nsp31212S1212KS2030KnonsynTCaAAa2216353-6355
ORF1ab/nsp31212S1212YS2030YnonsyntCAtAT2216353-6355
ORF1ab/nsp31212S1212NS2030NnonsynTCAAAC210.56353-6355
ORF1ab/nsp31212S1212NS2030NnonsynTCAAAT210.56353-6355
ORF1ab/nsp31212S1212RS2030RnonsynTCaAGa1116353-6355
ORF1ab/nsp31212S1212CS2030CnonsyntCAtGT1116353-6355

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31212S1212LtCatTa47534754All0.000909
ORF1ab/nsp31212S1212LTCaCTa14754All0
ORF1ab/nsp31212S1212PTcaCca794794All0.000152
ORF1ab/nsp31212S1212StcAtcT382710All0.000073
ORF1ab/nsp31212S1212StcAtcG271710All0.000052
ORF1ab/nsp31212S1212StcAtcC56710All0.000011
ORF1ab/nsp31212S1212STCAAGT1710All0
ORF1ab/nsp31212S1212LtCatTa710710B.1.1.70.000636
ORF1ab/nsp31212S1212LtCatTa567567AY.46.40.093272
ORF1ab/nsp31212S1212LtCatTa501501AY.40.00078
ORF1ab/nsp31212S1212PTcaCca442442B.1.1.70.000396
ORF1ab/nsp31212S1212LtCatTa378378AY.440.002301
ORF1ab/nsp31212S1212LtCatTa258258B.1.5270.955556
ORF1ab/nsp31212S1212LtCatTa247247B.1.3510.007342
ORF1ab/nsp31212S1212LtCatTa235235AY.250.001413
ORF1ab/nsp31212S1212ATcaGca214214All0.000041
ORF1ab/nsp31212S1212LtCatTa207207B.1.617.20.000779
ORF1ab/nsp31212S1212ATcaGca198198AY.40.000308
ORF1ab/nsp31212S1212delTCA---191191All0.000037
ORF1ab/nsp31212S1212LtCatTa189189AY.430.000837
ORF1ab/nsp31212S1212StcAtcT161180AY.40.000251
ORF1ab/nsp31212S1212StcAtcG19180AY.40.00003
ORF1ab/nsp31212S1212PTcaCca115115AY.470.003577
ORF1ab/nsp31212S1212LtCatTa114114AY.1030.000708
ORF1ab/nsp31212S1212StcAtcT9393AY.3.10.007929
ORF1ab/nsp31212S1212LtCatTa9191AY.30.000905
ORF1ab/nsp31212S1212StcAtcG7586B.1.1.70.000067
ORF1ab/nsp31212S1212StcAtcT886B.1.1.70.000007
ORF1ab/nsp31212S1212StcAtcC386B.1.1.70.000003
ORF1ab/nsp31212S1212LtCatTa6060B.1.20.000528
ORF1ab/nsp31212S1212LtCatTa5959P.10.000929
ORF1ab/nsp31212S1212StcAtcG5858AY.1190.002048
ORF1ab/nsp31212S1212LtCatTa5252B.1.10.000943
ORF1ab/nsp31212S1212LtCatTa5252B.1.1600.001622
ORF1ab/nsp31212S1212PTcaCca4949AY.250.000295
ORF1ab/nsp31212S1212LtCatTa4848B.10.00044
ORF1ab/nsp31212S1212LtCatTa4747B.1.5260.001105
ORF1ab/nsp31212S1212LtCatTa4646AY.240.019828
ORF1ab/nsp31212S1212LtCatTa4646B.1.6210.004072
ORF1ab/nsp31212S1212delTCA---3030AY.40.000047
ORF1ab/nsp31212S1212XtCatAa2729All0.000005
ORF1ab/nsp31212S1212XtCatGa229All0
ORF1ab/nsp31212S1212StcAtcG2329B.10.000211
ORF1ab/nsp31212S1212StcAtcC529B.10.000046
ORF1ab/nsp31212S1212StcAtcT129B.10.000009
ORF1ab/nsp31212S1212LtCatTa2929B.1.1770.000382
ORF1ab/nsp31212S1212LtCatTa2929B.1.258.170.003015
ORF1ab/nsp31212S1212StcAtcT2626AY.390.000642
ORF1ab/nsp31212S1212PTcaCca2626B.1.6210.002301
ORF1ab/nsp31212S1212LtCatTa2525B.1.2580.001664
ORF1ab/nsp31212S1212LtCatTa2424AY.98.10.001162
ORF1ab/nsp31212S1212StcAtcT2424B.1.1600.000749
ORF1ab/nsp31212S1212StcAtcT2123AY.430.000093
ORF1ab/nsp31212S1212StcAtcG223AY.430.000009
ORF1ab/nsp31212S1212delTCA---2121AY.46.50.004167
ORF1ab/nsp31212S1212TTcaAca1720All0.000003
ORF1ab/nsp31212S1212TTcAAcT320All0.000001
ORF1ab/nsp31212S1212PTcaCca1919B.1.177.210.001453
ORF1ab/nsp31212S1212delTCA---1919B.1.617.20.000072
ORF1ab/nsp31212S1212StcAtcG1219B.1.617.20.000045
ORF1ab/nsp31212S1212StcAtcC719B.1.617.20.000026
ORF1ab/nsp31212S1212PTcaCca1818AY.460.001873
ORF1ab/nsp31212S1212StcAtcG1618B.1.20.000141
ORF1ab/nsp31212S1212StcAtcC118B.1.20.000009
ORF1ab/nsp31212S1212StcAtcT118B.1.20.000009
ORF1ab/nsp31212S1212StcAtcT1717AY.330.001135
ORF1ab/nsp31212S1212LtCatTa1717AY.60.000699
ORF1ab/nsp31212S1212LtCatTa1717B.1.4270.000858
ORF1ab/nsp31212S1212LtCatTa1616AY.830.027586
ORF1ab/nsp31212S1212PTcaCca1616B.10.000147
ORF1ab/nsp31212S1212StcAtcC1315AY.1020.000345
ORF1ab/nsp31212S1212StcAtcT215AY.1020.000053
ORF1ab/nsp31212S1212LtCatTa1515AY.390.000371
ORF1ab/nsp31212S1212StcAtcC1415AY.50.000289
ORF1ab/nsp31212S1212StcAtcG115AY.50.000021
ORF1ab/nsp31212S1212LtCatTa1515B.1.1.3300.9375
ORF1ab/nsp31212S1212LtCatTa1515P.1.150.003485
ORF1ab/nsp31212S1212LtCatTa1414AY.340.001358
ORF1ab/nsp31212S1212LtCatTa1414B.1.4290.000329
ORF1ab/nsp31212S1212PTcaCca1414Q.80.002309
ORF1ab/nsp31212S1212delTCA---1313AY.1000.000598
ORF1ab/nsp31212S1212LtCatTa1313AY.200.000505
ORF1ab/nsp31212S1212LtCatTa1313AY.39.10.000515
ORF1ab/nsp31212S1212LtCatTa1212AY.1180.000752
ORF1ab/nsp31212S1212LtCatTa1212AY.1200.000446
ORF1ab/nsp31212S1212LtCatTa1212AY.460.001249
ORF1ab/nsp31212S1212LtCatTa1212AY.540.001144
ORF1ab/nsp31212S1212LtCatTa1212AY.590.006356
ORF1ab/nsp31212S1212LtCatTa1111AY.230.000767
ORF1ab/nsp31212S1212LtCatTa1111AY.290.000174
ORF1ab/nsp31212S1212LtCatTa1111AY.50.000227
ORF1ab/nsp31212S1212LtCatTa1111B.1.1.2740.055556
ORF1ab/nsp31212S1212delTCA---1111B.1.177.30.083969
ORF1ab/nsp31212S1212LtCatTa1111B.1.2210.000781
ORF1ab/nsp31212S1212LtCatTa1111B.1.2430.000765
ORF1ab/nsp31212S1212LtCatTa1111B.1.5750.003337
ORF1ab/nsp31212S1212LtCatTa1010AY.210.018975
ORF1ab/nsp31212S1212LtCatTa1010B.1.1.5190.000397
ORF1ab/nsp31212S1212delTCA---1010B.1.1.70.000009
ORF1ab/nsp31212S1212LtCatTa1010B.1.617.10.00129
ORF1ab/nsp31212S1212TTcaAca69AY.250.000036
ORF1ab/nsp31212S1212TTcAAcT39AY.250.000018
ORF1ab/nsp31212S1212PTcaCca99AY.290.000142
ORF1ab/nsp31212S1212LtCatTa99AY.360.001334
ORF1ab/nsp31212S1212PTcaCca99AY.430.00004
ORF1ab/nsp31212S1212StcAtcG59AY.440.00003
ORF1ab/nsp31212S1212StcAtcC49AY.440.000024
ORF1ab/nsp31212S1212LtCatTa99AY.80.005455
ORF1ab/nsp31212S1212ATcaGca99B.1.617.20.000034
ORF1ab/nsp31212S1212StcAtcT48AY.250.000024
ORF1ab/nsp31212S1212StcAtcG38AY.250.000018
ORF1ab/nsp31212S1212STCAAGT18AY.250.000006
ORF1ab/nsp31212S1212LtCatTa88AY.330.000534
ORF1ab/nsp31212S1212LtCatTa88AY.470.000249
ORF1ab/nsp31212S1212LtCatTa88B.1.360.001167
ORF1ab/nsp31212S1212PTcaCca88P.10.000126
ORF1ab/nsp31212S1212LtCatTa77AY.1020.000186
ORF1ab/nsp31212S1212LtCatTa77AY.140.000616
ORF1ab/nsp31212S1212LtCatTa77AY.4.20.000152
ORF1ab/nsp31212S1212LtCatTa77AY.610.000733
ORF1ab/nsp31212S1212LtCatTa77AY.980.000553
ORF1ab/nsp31212S1212LtCatTa77B.1.1.280.002179
ORF1ab/nsp31212S1212LtCatTa77B.1.1.3180.002112
ORF1ab/nsp31212S1212LtCatTa77B.1.160.220.047297
ORF1ab/nsp31212S1212LtCatTa77C.370.000812
ORF1ab/nsp31212S1212del1tcAtc-56All0.000001
ORF1ab/nsp31212S1212del1tCAt-N16All0
ORF1ab/nsp31212S1212LtCatTa66AY.1190.000212
ORF1ab/nsp31212S1212StcAtcG56AY.30.00005
ORF1ab/nsp31212S1212StcAtcT16AY.30.00001
ORF1ab/nsp31212S1212PTcaCca66AY.40.000009
ORF1ab/nsp31212S1212LtCatTa66AY.46.60.000433
ORF1ab/nsp31212S1212LtCatTa66AY.750.000336
ORF1ab/nsp31212S1212TTcaAca66B.1.1.70.000005
ORF1ab/nsp31212S1212LtCatTa66B.1.160.160.005576
ORF1ab/nsp31212S1212LtCatTa66B.1.177.810.001136
ORF1ab/nsp31212S1212LtCatTa66B.1.2360.01232
ORF1ab/nsp31212S1212LtCatTa66B.1.2980.012685
ORF1ab/nsp31212S1212LtCatTa66B.1.5670.02
ORF1ab/nsp31212S1212LtCatTa66P.1.140.000287
ORF1ab/nsp31212S1212PTcaCca55AV.10.025253
ORF1ab/nsp31212S1212LtCatTa55AY.1000.00023
ORF1ab/nsp31212S1212LtCatTa55AY.1170.000423
ORF1ab/nsp31212S1212XtCatAa45AY.250.000024
ORF1ab/nsp31212S1212XtCatGa15AY.250.000006
ORF1ab/nsp31212S1212LtCatTa55AY.500.003997
ORF1ab/nsp31212S1212LtCatTa55AY.730.003327
ORF1ab/nsp31212S1212LtCatTa55AY.99.20.000461
ORF1ab/nsp31212S1212delTCA---55B.10.000046
ORF1ab/nsp31212S1212LtCatTa55B.1.1.390.002548
ORF1ab/nsp31212S1212StcAtcG55B.1.3510.000149
ORF1ab/nsp31212S1212LtCatTa55B.1.4970.001574
ORF1ab/nsp31212S1212LtCatTa55B.1.5960.000436
ORF1ab/nsp31212S1212LtCatTa55D.20.000375
ORF1ab/nsp31212S1212LtCatTa55P.1.60.009728
ORF1ab/nsp31212S1212LtCatTa44A.2.50.001996
ORF1ab/nsp31212S1212LtCatTa44A.280.010582
ORF1ab/nsp31212S1212del2tCAt--34All0.000001
ORF1ab/nsp31212S1212del2TCA--G14All0
ORF1ab/nsp31212S1212LtCatTa44AY.1130.00057
ORF1ab/nsp31212S1212delTCA---44AY.250.000024
ORF1ab/nsp31212S1212delTCA---44AY.390.000099
ORF1ab/nsp31212S1212PTcaCca44AY.420.000161
ORF1ab/nsp31212S1212XtCatAa44AY.430.000018
ORF1ab/nsp31212S1212PTcaCca44AY.60.000165
ORF1ab/nsp31212S1212LtCatTa44AY.690.000747
ORF1ab/nsp31212S1212LtCatTa44AY.9.10.000335
ORF1ab/nsp31212S1212LtCatTa44AY.9.20.000147
ORF1ab/nsp31212S1212LtCatTa44B0.000511
ORF1ab/nsp31212S1212XtCatAa44B.10.000037
ORF1ab/nsp31212S1212StcAtcG24B.1.10.000036
ORF1ab/nsp31212S1212StcAtcT24B.1.10.000036
ORF1ab/nsp31212S1212LtCatTa44B.1.1.1530.004381
ORF1ab/nsp31212S1212LtCatTa44B.1.1.4170.010811
ORF1ab/nsp31212S1212delTCA---44B.1.1770.000053
ORF1ab/nsp31212S1212LtCatTa44B.1.177.280.02963
ORF1ab/nsp31212S1212LtCatTa44B.1.2340.000528
ORF1ab/nsp31212S1212delTCA---44B.1.2340.000528
ORF1ab/nsp31212S1212PTcaCca44B.1.2580.000266
ORF1ab/nsp31212S1212LtCatTa44B.1.3670.00317
ORF1ab/nsp31212S1212LtCatTa44B.1.621.10.002023
ORF1ab/nsp31212S1212FtCAtTT33All0.000001
ORF1ab/nsp31212S1212ITCaATa23All0
ORF1ab/nsp31212S1212ITCAATT13All0
ORF1ab/nsp31212S1212StcAtcG33AY.120.000948
ORF1ab/nsp31212S1212LtCatTa33AY.23.10.001252
ORF1ab/nsp31212S1212ITCaATa23AY.250.000012
ORF1ab/nsp31212S1212ITCAATT13AY.250.000006
ORF1ab/nsp31212S1212PTcaCca33AY.260.000085
ORF1ab/nsp31212S1212LtCatTa33AY.270.000194
ORF1ab/nsp31212S1212LtCatTa33AY.3.10.000256
ORF1ab/nsp31212S1212LtCatTa33AY.410.000882
ORF1ab/nsp31212S1212XtCatAa33AY.420.000121
ORF1ab/nsp31212S1212LtCatTa33AY.420.000121
ORF1ab/nsp31212S1212delTCA---33AY.430.000013
ORF1ab/nsp31212S1212PTcaCca33AY.440.000018
ORF1ab/nsp31212S1212StcAtcT23AY.470.000062
ORF1ab/nsp31212S1212StcAtcG13AY.470.000031
ORF1ab/nsp31212S1212LtCatTa33AY.480.001395
ORF1ab/nsp31212S1212PTcaCca33AY.50.000062
ORF1ab/nsp31212S1212LtCatTa33AY.5.40.00083
ORF1ab/nsp31212S1212PTcaCca33AY.9.20.00011
ORF1ab/nsp31212S1212LtCatTa33AY.930.000819
ORF1ab/nsp31212S1212LtCatTa33B.1.1.2140.000166
ORF1ab/nsp31212S1212LtCatTa33B.1.1.3590.083333
ORF1ab/nsp31212S1212delTCA---33B.1.1.5190.000119
ORF1ab/nsp31212S1212ATcaGca33B.1.1.70.000003
ORF1ab/nsp31212S1212LtCatTa33B.1.177.300.007538
ORF1ab/nsp31212S1212LtCatTa33B.1.177.570.000843
ORF1ab/nsp31212S1212StcAtcG33B.1.177.830.004444
ORF1ab/nsp31212S1212PTcaCca33B.1.20.000026
ORF1ab/nsp31212S1212LtCatTa33B.1.3610.003866
ORF1ab/nsp31212S1212LtCatTa33B.1.5810.028302
ORF1ab/nsp31212S1212StcAtcG33B.1.6090.001438
ORF1ab/nsp31212S1212del2tCAt--33B.1.617.20.000011
ORF1ab/nsp31212S1212PTcaCca33B.110.015385
ORF1ab/nsp31212S1212delTCA---33P.10.000047
ORF1ab/nsp31212S1212StcAtcC23P.10.000032
ORF1ab/nsp31212S1212StcAtcG13P.10.000016
ORF1ab/nsp31212S1212LtCatTa33R.10.00027
ORF1ab/nsp31212S1212LtCatTa22A.30.004193
ORF1ab/nsp31212S1212YtCAtAT22All0
ORF1ab/nsp31212S1212KTCaAAa22All0
ORF1ab/nsp31212S1212NTCAAAC12All0
ORF1ab/nsp31212S1212NTCAAAT12All0
ORF1ab/nsp31212S1212StcAtcC12AY.1000.000046
ORF1ab/nsp31212S1212StcAtcT12AY.1000.000046
ORF1ab/nsp31212S1212StcAtcG22AY.1180.000125
ORF1ab/nsp31212S1212StcAtcC12AY.140.000088
ORF1ab/nsp31212S1212StcAtcG12AY.140.000088
ORF1ab/nsp31212S1212delTCA---22AY.200.000078
ORF1ab/nsp31212S1212XtCatAa22AY.230.000139
ORF1ab/nsp31212S1212FtCAtTT22AY.250.000012
ORF1ab/nsp31212S1212KTCaAAa22AY.250.000012
ORF1ab/nsp31212S1212YtCAtAT22AY.250.000012
ORF1ab/nsp31212S1212LtCatTa22AY.260.000057
ORF1ab/nsp31212S1212LtCatTa22AY.29.10.000441
ORF1ab/nsp31212S1212LtCatTa22AY.350.000466
ORF1ab/nsp31212S1212StcAtcC12AY.4.20.000022
ORF1ab/nsp31212S1212StcAtcG12AY.4.20.000022
ORF1ab/nsp31212S1212LtCatTa22AY.4.50.000215
ORF1ab/nsp31212S1212delTCA---22AY.440.000012
ORF1ab/nsp31212S1212LtCatTa22AY.450.000243
ORF1ab/nsp31212S1212StcAtcT22AY.46.50.000397
ORF1ab/nsp31212S1212delTCA---22AY.60.000082
ORF1ab/nsp31212S1212PTcaCca22AY.650.001066
ORF1ab/nsp31212S1212StcAtcC12AY.9.20.000037
ORF1ab/nsp31212S1212StcAtcG12AY.9.20.000037
ORF1ab/nsp31212S1212LtCatTa22AY.910.001461
ORF1ab/nsp31212S1212LtCatTa22AY.950.001522
ORF1ab/nsp31212S1212TTcaAca22AY.98.10.000097
ORF1ab/nsp31212S1212delTCA---22B.1.10.000036
ORF1ab/nsp31212S1212LtCatTa22B.1.1.1760.000879
ORF1ab/nsp31212S1212PTcaCca22B.1.1.250.001137
ORF1ab/nsp31212S1212LtCatTa22B.1.1.270.011299
ORF1ab/nsp31212S1212LtCatTa22B.1.1.2980.001724
ORF1ab/nsp31212S1212LtCatTa22B.1.1.3770.002762
ORF1ab/nsp31212S1212LtCatTa22B.1.1.500.001358
ORF1ab/nsp31212S1212StcAtcT22B.1.1.5190.000079
ORF1ab/nsp31212S1212delTCA---22B.1.1.980.037037
ORF1ab/nsp31212S1212StcAtcG12B.1.1770.000013
ORF1ab/nsp31212S1212StcAtcT12B.1.1770.000013
ORF1ab/nsp31212S1212LtCatTa22B.1.177.210.000153
ORF1ab/nsp31212S1212LtCatTa22B.1.177.60.001953
ORF1ab/nsp31212S1212LtCatTa22B.1.177.600.000437
ORF1ab/nsp31212S1212delTCA---22B.1.177.830.002963
ORF1ab/nsp31212S1212LtCatTa22B.1.214.20.001199
ORF1ab/nsp31212S1212delTCA---22B.1.2210.000142
ORF1ab/nsp31212S1212delTCA---22B.1.2580.000133
ORF1ab/nsp31212S1212LtCatTa22B.1.36.80.002
ORF1ab/nsp31212S1212delTCA---22B.1.4290.000047
ORF1ab/nsp31212S1212LtCatTa22B.1.5170.000854
ORF1ab/nsp31212S1212StcAtcT22B.1.5750.000607
ORF1ab/nsp31212S1212LtCatTa22B.1.6090.000959
ORF1ab/nsp31212S1212LtCatTa22B.1.619.10.001283
ORF1ab/nsp31212S1212LtCatTa22B.1.6280.000705
ORF1ab/nsp31212S1212LtCatTa22C.160.002121
ORF1ab/nsp31212S1212delTCA---22C.20.032258
ORF1ab/nsp31212S1212LtCatTa22P.1.170.000324
ORF1ab/nsp31212S1212LtCatTa22P.1.70.000639
ORF1ab/nsp31212S1212LtCatTa22Q.10.000253
ORF1ab/nsp31212S1212PTcaCca22R.10.00018
ORF1ab/nsp31212S1212StcAtcT11A0.000387
ORF1ab/nsp31212S1212XtCatAa11A0.000387
ORF1ab/nsp31212S1212LtCatTa11A.23.10.000704
ORF1ab/nsp31212S1212LtCatTa11A.270.001656
ORF1ab/nsp31212S1212LtCatTa11AD.20.000219
ORF1ab/nsp31212S1212LtCatTa11AE.80.000489
ORF1ab/nsp31212S1212CtCAtGT11All0
ORF1ab/nsp31212S1212RTCaAGa11All0
ORF1ab/nsp31212S1212LtCatTa11AY.1010.00049
ORF1ab/nsp31212S1212delTCA---11AY.1010.00049
ORF1ab/nsp31212S1212StcAtcG11AY.1030.000006
ORF1ab/nsp31212S1212delTCA---11AY.1030.000006
ORF1ab/nsp31212S1212PTcaCca11AY.1030.000006
ORF1ab/nsp31212S1212StcAtcG11AY.1060.000335
ORF1ab/nsp31212S1212delTCA---11AY.1080.001103
ORF1ab/nsp31212S1212PTcaCca11AY.1110.000183
ORF1ab/nsp31212S1212LtCatTa11AY.1110.000183
ORF1ab/nsp31212S1212LtCatTa11AY.1140.000231
ORF1ab/nsp31212S1212StcAtcG11AY.1170.000085
ORF1ab/nsp31212S1212PTcaCca11AY.1190.000035
ORF1ab/nsp31212S1212TTcaAca11AY.1200.000037
ORF1ab/nsp31212S1212PTcaCca11AY.1200.000037
ORF1ab/nsp31212S1212LtCatTa11AY.1210.000135
ORF1ab/nsp31212S1212XtCatAa11AY.1210.000135
ORF1ab/nsp31212S1212StcAtcT11AY.160.00038
ORF1ab/nsp31212S1212StcAtcG11AY.200.000039
ORF1ab/nsp31212S1212delTCA---11AY.230.00007
ORF1ab/nsp31212S1212StcAtcG11AY.230.00007
ORF1ab/nsp31212S1212delTCA---11AY.240.000431
ORF1ab/nsp31212S1212RTCaAGa11AY.250.000006
ORF1ab/nsp31212S1212CtCAtGT11AY.250.000006
ORF1ab/nsp31212S1212NTCAAAT11AY.250.000006
ORF1ab/nsp31212S1212StcAtcG11AY.260.000028
ORF1ab/nsp31212S1212StcAtcG11AY.290.000016
ORF1ab/nsp31212S1212PTcaCca11AY.29.10.000221
ORF1ab/nsp31212S1212delTCA---11AY.30.00001
ORF1ab/nsp31212S1212XtCatAa11AY.30.00001
ORF1ab/nsp31212S1212delTCA---11AY.3.10.000085
ORF1ab/nsp31212S1212XtCatAa11AY.330.000067
ORF1ab/nsp31212S1212delTCA---11AY.330.000067
ORF1ab/nsp31212S1212LtCatTa11AY.34.10.00051
ORF1ab/nsp31212S1212PTcaCca11AY.350.000233
ORF1ab/nsp31212S1212StcAtcG11AY.380.000499
ORF1ab/nsp31212S1212PTcaCca11AY.390.000025
ORF1ab/nsp31212S1212StcAtcT11AY.39.10.00004
ORF1ab/nsp31212S1212StcAtcG11AY.4.50.000107
ORF1ab/nsp31212S1212ATcaGca11AY.420.00004
ORF1ab/nsp31212S1212del1tCAt-N11AY.440.000006
ORF1ab/nsp31212S1212StcAtcT11AY.450.000122
ORF1ab/nsp31212S1212delTCA---11AY.460.000104
ORF1ab/nsp31212S1212LtCatTa11AY.46.20.000635
ORF1ab/nsp31212S1212StcAtcG11AY.46.40.000165
ORF1ab/nsp31212S1212del1tcAtc-11AY.46.50.000198
ORF1ab/nsp31212S1212ATcaGca11AY.46.60.000072
ORF1ab/nsp31212S1212delTCA---11AY.470.000031
ORF1ab/nsp31212S1212delTCA---11AY.490.003195
ORF1ab/nsp31212S1212StcAtcG11AY.5.30.000337
ORF1ab/nsp31212S1212XtCatAa11AY.520.000814
ORF1ab/nsp31212S1212LtCatTa11AY.530.000288
ORF1ab/nsp31212S1212ATcaGca11AY.60.000041
ORF1ab/nsp31212S1212PTcaCca11AY.610.000105
ORF1ab/nsp31212S1212StcAtcG11AY.610.000105
ORF1ab/nsp31212S1212delTCA---11AY.630.000387
ORF1ab/nsp31212S1212LtCatTa11AY.640.000595
ORF1ab/nsp31212S1212delTCA---11AY.660.00107
ORF1ab/nsp31212S1212LtCatTa11AY.70.000196
ORF1ab/nsp31212S1212StcAtcG11AY.7.20.000559
ORF1ab/nsp31212S1212LtCatTa11AY.700.000209
ORF1ab/nsp31212S1212LtCatTa11AY.710.000475
ORF1ab/nsp31212S1212StcAtcG11AY.730.000665
ORF1ab/nsp31212S1212delTCA---11AY.740.000116
ORF1ab/nsp31212S1212LtCatTa11AY.75.10.00018
ORF1ab/nsp31212S1212del1tcAtc-11AY.790.001211
ORF1ab/nsp31212S1212StcAtcT11AY.860.00083
ORF1ab/nsp31212S1212LtCatTa11AY.870.000833
ORF1ab/nsp31212S1212LtCatTa11AY.880.000884
ORF1ab/nsp31212S1212LtCatTa11AY.90.000068
ORF1ab/nsp31212S1212StcAtcT11AY.90.000068
ORF1ab/nsp31212S1212PTcaCca11AY.98.10.000048
ORF1ab/nsp31212S1212delTCA---11AY.990.001049
ORF1ab/nsp31212S1212delTCA---11AY.99.20.000092
ORF1ab/nsp31212S1212LtCatTa11AZ.10.000867
ORF1ab/nsp31212S1212LtCatTa11AZ.30.00152
ORF1ab/nsp31212S1212XtCatAa11B0.000128
ORF1ab/nsp31212S1212PTcaCca11B.1.10.000018
ORF1ab/nsp31212S1212delTCA---11B.1.1.100.001115
ORF1ab/nsp31212S1212delTCA---11B.1.1.1590.004673
ORF1ab/nsp31212S1212LtCatTa11B.1.1.1700.001247
ORF1ab/nsp31212S1212LtCatTa11B.1.1.1980.001468
ORF1ab/nsp31212S1212delTCA---11B.1.1.2140.000055
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2160.00089
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2220.000204
ORF1ab/nsp31212S1212delTCA---11B.1.1.2220.000204
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2260.005814
ORF1ab/nsp31212S1212PTcaCca11B.1.1.2980.000862
ORF1ab/nsp31212S1212LtCatTa11B.1.1.300.076923
ORF1ab/nsp31212S1212StcAtcT11B.1.1.3040.002809
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3100.015152
ORF1ab/nsp31212S1212StcAtcG11B.1.1.3150.008475
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3160.000925
ORF1ab/nsp31212S1212StcAtcT11B.1.1.3480.000796
ORF1ab/nsp31212S1212delTCA---11B.1.1.3480.000796
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3560.008547
ORF1ab/nsp31212S1212StcAtcG11B.1.1.370.000193
ORF1ab/nsp31212S1212PTcaCca11B.1.1.3720.000689
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3760.005952
ORF1ab/nsp31212S1212LtCatTa11B.1.1.4090.002833
ORF1ab/nsp31212S1212LtCatTa11B.1.1.4160.000905
ORF1ab/nsp31212S1212LtCatTa11B.1.1.460.004367
ORF1ab/nsp31212S1212delTCA---11B.1.1.5240.020833
ORF1ab/nsp31212S1212XtCatAa11B.1.1.70.000001
ORF1ab/nsp31212S1212del2TCA--G11B.1.1.70.000001
ORF1ab/nsp31212S1212LtCatTa11B.1.1110.001175
ORF1ab/nsp31212S1212LtCatTa11B.1.1260.001276
ORF1ab/nsp31212S1212LtCatTa11B.1.130.002375
ORF1ab/nsp31212S1212del1tcAtc-11B.1.1600.000031
ORF1ab/nsp31212S1212LtCatTa11B.1.160.140.002119
ORF1ab/nsp31212S1212FtCAtTT11B.1.1770.000013
ORF1ab/nsp31212S1212LtCatTa11B.1.177.120.000152
ORF1ab/nsp31212S1212LtCatTa11B.1.177.160.000664
ORF1ab/nsp31212S1212delTCA---11B.1.177.350.000691
ORF1ab/nsp31212S1212LtCatTa11B.1.177.440.000519
ORF1ab/nsp31212S1212delTCA---11B.1.177.450.000381
ORF1ab/nsp31212S1212LtCatTa11B.1.177.510.004566
ORF1ab/nsp31212S1212delTCA---11B.1.177.620.001192
ORF1ab/nsp31212S1212LtCatTa11B.1.177.770.000726
ORF1ab/nsp31212S1212LtCatTa11B.1.177.80.000752
ORF1ab/nsp31212S1212delTCA---11B.1.177.810.000189
ORF1ab/nsp31212S1212NTCAAAC11B.1.177.830.001481
ORF1ab/nsp31212S1212delTCA---11B.1.20.000009
ORF1ab/nsp31212S1212StcAtcG11B.1.2100.002132
ORF1ab/nsp31212S1212ATcaGca11B.1.214.20.0006
ORF1ab/nsp31212S1212StcAtcG11B.1.2210.000071
ORF1ab/nsp31212S1212LtCatTa11B.1.2230.002778
ORF1ab/nsp31212S1212PTcaCca11B.1.2340.000132
ORF1ab/nsp31212S1212PTcaCca11B.1.2430.00007
ORF1ab/nsp31212S1212delTCA---11B.1.258.170.000104
ORF1ab/nsp31212S1212XtCatAa11B.1.3010.005917
ORF1ab/nsp31212S1212PTcaCca11B.1.3110.000275
ORF1ab/nsp31212S1212LtCatTa11B.1.350.008475
ORF1ab/nsp31212S1212StcAtcG11B.1.351.30.000876
ORF1ab/nsp31212S1212LtCatTa11B.1.3560.001727
ORF1ab/nsp31212S1212delTCA---11B.1.360.000146
ORF1ab/nsp31212S1212LtCatTa11B.1.36.290.000517
ORF1ab/nsp31212S1212PTcaCca11B.1.36.360.000602
ORF1ab/nsp31212S1212LtCatTa11B.1.36.370.002778
ORF1ab/nsp31212S1212PTcaCca11B.1.3710.001122
ORF1ab/nsp31212S1212LtCatTa11B.1.3750.00082
ORF1ab/nsp31212S1212StcAtcG11B.1.3750.00082
ORF1ab/nsp31212S1212delTCA---11B.1.3820.008929
ORF1ab/nsp31212S1212LtCatTa11B.1.4060.006061
ORF1ab/nsp31212S1212StcAtcC11B.1.416.10.001563
ORF1ab/nsp31212S1212StcAtcG11B.1.4270.00005
ORF1ab/nsp31212S1212delTCA---11B.1.428.20.033333
ORF1ab/nsp31212S1212PTcaCca11B.1.4290.000024
ORF1ab/nsp31212S1212StcAtcG11B.1.4290.000024
ORF1ab/nsp31212S1212LtCatTa11B.1.438.20.019231
ORF1ab/nsp31212S1212StcAtcC11B.1.4620.007246
ORF1ab/nsp31212S1212LtCatTa11B.1.466.20.000391
ORF1ab/nsp31212S1212StcAtcG11B.1.5010.007353
ORF1ab/nsp31212S1212StcAtcT11B.1.5240.001406
ORF1ab/nsp31212S1212LtCatTa11B.1.5240.001406
ORF1ab/nsp31212S1212delTCA---11B.1.5250.000113
ORF1ab/nsp31212S1212LtCatTa11B.1.5250.000113
ORF1ab/nsp31212S1212del1tcAtc-11B.1.5250.000113
ORF1ab/nsp31212S1212delTCA---11B.1.5260.000024
ORF1ab/nsp31212S1212StcAtcT11B.1.5410.004425
ORF1ab/nsp31212S1212StcAtcG11B.1.5480.035714
ORF1ab/nsp31212S1212LtCatTa11B.1.5610.000397
ORF1ab/nsp31212S1212del1tcAtc-11B.1.5610.000397
ORF1ab/nsp31212S1212LtCatTa11B.1.564.10.001577
ORF1ab/nsp31212S1212LtCatTa11B.1.5820.000491
ORF1ab/nsp31212S1212LtCatTa11B.1.5870.001898
ORF1ab/nsp31212S1212PTcaCca11B.1.5950.000261
ORF1ab/nsp31212S1212StcAtcC11B.1.6000.005848
ORF1ab/nsp31212S1212TTcaAca11B.1.617.20.000004
ORF1ab/nsp31212S1212XtCatAa11B.1.617.20.000004
ORF1ab/nsp31212S1212LtCatTa11B.1.6180.004032
ORF1ab/nsp31212S1212PTcaCca11B.1.619.10.000641
ORF1ab/nsp31212S1212StcAtcG11B.1.6210.000089
ORF1ab/nsp31212S1212XtCatAa11B.1.6230.000536
ORF1ab/nsp31212S1212TTcaAca11B.1.6280.000352
ORF1ab/nsp31212S1212delTCA---11B.1.6300.005236
ORF1ab/nsp31212S1212LtCatTa11B.350.007812
ORF1ab/nsp31212S1212PTcaCca11B.460.020833
ORF1ab/nsp31212S1212LTCaCTa11C.350.000774
ORF1ab/nsp31212S1212LtCatTa11C.36.30.000567
ORF1ab/nsp31212S1212StcAtcT11C.36.30.000567
ORF1ab/nsp31212S1212XtCatGa11D.20.000075
ORF1ab/nsp31212S1212StcAtcG11D.20.000075
ORF1ab/nsp31212S1212delTCA---11P.1.10.000318
ORF1ab/nsp31212S1212StcAtcG11P.1.100.000269
ORF1ab/nsp31212S1212LtCatTa11P.1.120.000484
ORF1ab/nsp31212S1212PTcaCca11P.1.140.000048
ORF1ab/nsp31212S1212delTCA---11P.20.000187
ORF1ab/nsp31212S1212StcAtcG11P.20.000187
ORF1ab/nsp31212S1212LtCatTa11P.30.001595
ORF1ab/nsp31212S1212delTCA---11Q.80.000165
ORF1ab/nsp31212S1212LtCatTa11U.30.003861